Multiple sequence alignment - TraesCS6A01G235900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G235900 chr6A 100.000 5121 0 0 1 5121 445502687 445507807 0.000000e+00 9457.0
1 TraesCS6A01G235900 chr6A 99.485 583 0 1 4542 5121 94097094 94097676 0.000000e+00 1057.0
2 TraesCS6A01G235900 chr6A 99.483 580 3 0 4542 5121 323250567 323251146 0.000000e+00 1055.0
3 TraesCS6A01G235900 chr6A 76.652 227 52 1 2956 3181 563741157 563740931 1.940000e-24 124.0
4 TraesCS6A01G235900 chr6A 90.323 62 4 2 1821 1882 52181616 52181675 4.250000e-11 80.5
5 TraesCS6A01G235900 chr6B 90.989 1254 107 3 2922 4175 476177355 476176108 0.000000e+00 1685.0
6 TraesCS6A01G235900 chr6B 99.312 581 4 0 4541 5121 93390064 93390644 0.000000e+00 1051.0
7 TraesCS6A01G235900 chr6B 91.024 713 52 8 2218 2924 126875186 126874480 0.000000e+00 952.0
8 TraesCS6A01G235900 chr6B 86.658 757 53 16 794 1540 476192552 476191834 0.000000e+00 795.0
9 TraesCS6A01G235900 chr6B 91.967 361 25 3 4161 4520 476176039 476175682 2.130000e-138 503.0
10 TraesCS6A01G235900 chr6B 92.241 348 21 4 1879 2226 476177692 476177351 5.960000e-134 488.0
11 TraesCS6A01G235900 chr6B 87.702 309 27 7 447 751 476193155 476192854 2.930000e-92 350.0
12 TraesCS6A01G235900 chr6B 93.088 217 14 1 1522 1738 476191817 476191602 2.980000e-82 316.0
13 TraesCS6A01G235900 chr6B 90.351 114 6 5 89 200 476338678 476338568 1.490000e-30 145.0
14 TraesCS6A01G235900 chr6B 87.129 101 11 2 355 453 476202950 476202850 4.190000e-21 113.0
15 TraesCS6A01G235900 chr6B 93.939 66 3 1 1814 1878 95497819 95497884 1.170000e-16 99.0
16 TraesCS6A01G235900 chr6B 95.161 62 2 1 1821 1882 95515595 95515535 4.220000e-16 97.1
17 TraesCS6A01G235900 chr6B 91.379 58 5 0 1821 1878 95558796 95558853 4.250000e-11 80.5
18 TraesCS6A01G235900 chr6D 89.782 1194 73 23 402 1572 308925721 308924554 0.000000e+00 1483.0
19 TraesCS6A01G235900 chr6D 90.062 1137 85 12 3387 4520 308922967 308921856 0.000000e+00 1448.0
20 TraesCS6A01G235900 chr6D 78.333 180 33 6 3029 3205 37835315 37835139 1.510000e-20 111.0
21 TraesCS6A01G235900 chr6D 94.828 58 3 0 1821 1878 41607167 41607110 1.960000e-14 91.6
22 TraesCS6A01G235900 chr6D 91.935 62 4 1 1821 1882 41620304 41620364 9.140000e-13 86.1
23 TraesCS6A01G235900 chr1A 96.296 702 25 1 2224 2924 579157756 579157055 0.000000e+00 1151.0
24 TraesCS6A01G235900 chr3D 93.741 719 36 2 2213 2924 383184122 383184838 0.000000e+00 1070.0
25 TraesCS6A01G235900 chr3D 94.737 95 4 1 260 354 29991117 29991210 4.130000e-31 147.0
26 TraesCS6A01G235900 chr2A 94.085 710 32 2 2222 2924 16375387 16376093 0.000000e+00 1070.0
27 TraesCS6A01G235900 chr2A 99.655 580 2 0 4542 5121 44816861 44816282 0.000000e+00 1061.0
28 TraesCS6A01G235900 chr2A 99.483 580 3 0 4542 5121 480457339 480456760 0.000000e+00 1055.0
29 TraesCS6A01G235900 chr7B 99.828 580 1 0 4542 5121 297776927 297777506 0.000000e+00 1066.0
30 TraesCS6A01G235900 chr7B 96.667 90 3 0 260 349 3117441 3117352 3.190000e-32 150.0
31 TraesCS6A01G235900 chr7B 92.929 99 7 0 256 354 583158166 583158264 1.490000e-30 145.0
32 TraesCS6A01G235900 chr7A 99.655 580 2 0 4542 5121 575933305 575933884 0.000000e+00 1061.0
33 TraesCS6A01G235900 chr7A 99.315 584 1 1 4541 5121 180429574 180430157 0.000000e+00 1053.0
34 TraesCS6A01G235900 chr1B 99.484 581 2 1 4541 5121 328875641 328875062 0.000000e+00 1055.0
35 TraesCS6A01G235900 chr3A 94.234 659 38 0 2222 2880 601369874 601369216 0.000000e+00 1007.0
36 TraesCS6A01G235900 chr2B 91.952 671 42 8 2215 2879 800074467 800073803 0.000000e+00 929.0
37 TraesCS6A01G235900 chr2B 82.353 170 26 2 2530 2699 700210918 700210753 1.490000e-30 145.0
38 TraesCS6A01G235900 chr5A 92.000 650 49 1 2223 2872 23896399 23895753 0.000000e+00 909.0
39 TraesCS6A01G235900 chr5A 93.000 100 4 3 260 356 683962804 683962903 5.340000e-30 143.0
40 TraesCS6A01G235900 chr5A 80.337 178 35 0 3004 3181 709470982 709470805 8.940000e-28 135.0
41 TraesCS6A01G235900 chr5B 90.556 540 51 0 2385 2924 565348081 565348620 0.000000e+00 715.0
42 TraesCS6A01G235900 chr5B 92.769 484 33 2 2221 2704 670077802 670077321 0.000000e+00 699.0
43 TraesCS6A01G235900 chr5B 93.137 102 5 2 260 359 503104155 503104256 1.150000e-31 148.0
44 TraesCS6A01G235900 chr5B 92.233 103 6 2 260 362 699242815 699242915 1.490000e-30 145.0
45 TraesCS6A01G235900 chr2D 88.071 394 41 2 2533 2924 46357059 46356670 3.610000e-126 462.0
46 TraesCS6A01G235900 chr2D 82.609 138 20 2 3029 3165 386589154 386589288 9.010000e-23 119.0
47 TraesCS6A01G235900 chr4D 82.385 369 64 1 2991 3359 297351253 297351620 2.300000e-83 320.0
48 TraesCS6A01G235900 chrUn 96.667 90 3 0 260 349 43167116 43167027 3.190000e-32 150.0
49 TraesCS6A01G235900 chrUn 93.878 98 4 2 260 357 293082190 293082285 4.130000e-31 147.0
50 TraesCS6A01G235900 chr3B 94.681 94 5 0 260 353 787504379 787504472 4.130000e-31 147.0
51 TraesCS6A01G235900 chr5D 96.552 58 2 0 1821 1878 339656553 339656610 4.220000e-16 97.1
52 TraesCS6A01G235900 chr5D 94.915 59 3 0 1821 1879 339655258 339655200 5.460000e-15 93.5
53 TraesCS6A01G235900 chr5D 77.444 133 25 5 3121 3250 493936904 493936774 1.980000e-09 75.0
54 TraesCS6A01G235900 chr7D 94.444 36 1 1 3 37 243339024 243338989 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G235900 chr6A 445502687 445507807 5120 False 9457.0 9457 100.000000 1 5121 1 chr6A.!!$F4 5120
1 TraesCS6A01G235900 chr6A 94097094 94097676 582 False 1057.0 1057 99.485000 4542 5121 1 chr6A.!!$F2 579
2 TraesCS6A01G235900 chr6A 323250567 323251146 579 False 1055.0 1055 99.483000 4542 5121 1 chr6A.!!$F3 579
3 TraesCS6A01G235900 chr6B 93390064 93390644 580 False 1051.0 1051 99.312000 4541 5121 1 chr6B.!!$F1 580
4 TraesCS6A01G235900 chr6B 126874480 126875186 706 True 952.0 952 91.024000 2218 2924 1 chr6B.!!$R2 706
5 TraesCS6A01G235900 chr6B 476175682 476177692 2010 True 892.0 1685 91.732333 1879 4520 3 chr6B.!!$R5 2641
6 TraesCS6A01G235900 chr6B 476191602 476193155 1553 True 487.0 795 89.149333 447 1738 3 chr6B.!!$R6 1291
7 TraesCS6A01G235900 chr6D 308921856 308925721 3865 True 1465.5 1483 89.922000 402 4520 2 chr6D.!!$R3 4118
8 TraesCS6A01G235900 chr1A 579157055 579157756 701 True 1151.0 1151 96.296000 2224 2924 1 chr1A.!!$R1 700
9 TraesCS6A01G235900 chr3D 383184122 383184838 716 False 1070.0 1070 93.741000 2213 2924 1 chr3D.!!$F2 711
10 TraesCS6A01G235900 chr2A 16375387 16376093 706 False 1070.0 1070 94.085000 2222 2924 1 chr2A.!!$F1 702
11 TraesCS6A01G235900 chr2A 44816282 44816861 579 True 1061.0 1061 99.655000 4542 5121 1 chr2A.!!$R1 579
12 TraesCS6A01G235900 chr2A 480456760 480457339 579 True 1055.0 1055 99.483000 4542 5121 1 chr2A.!!$R2 579
13 TraesCS6A01G235900 chr7B 297776927 297777506 579 False 1066.0 1066 99.828000 4542 5121 1 chr7B.!!$F1 579
14 TraesCS6A01G235900 chr7A 575933305 575933884 579 False 1061.0 1061 99.655000 4542 5121 1 chr7A.!!$F2 579
15 TraesCS6A01G235900 chr7A 180429574 180430157 583 False 1053.0 1053 99.315000 4541 5121 1 chr7A.!!$F1 580
16 TraesCS6A01G235900 chr1B 328875062 328875641 579 True 1055.0 1055 99.484000 4541 5121 1 chr1B.!!$R1 580
17 TraesCS6A01G235900 chr3A 601369216 601369874 658 True 1007.0 1007 94.234000 2222 2880 1 chr3A.!!$R1 658
18 TraesCS6A01G235900 chr2B 800073803 800074467 664 True 929.0 929 91.952000 2215 2879 1 chr2B.!!$R2 664
19 TraesCS6A01G235900 chr5A 23895753 23896399 646 True 909.0 909 92.000000 2223 2872 1 chr5A.!!$R1 649
20 TraesCS6A01G235900 chr5B 565348081 565348620 539 False 715.0 715 90.556000 2385 2924 1 chr5B.!!$F2 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
118 119 0.254747 TAACTGGCTGGCCCATGTAC 59.745 55.0 9.28 0.0 44.33 2.90 F
135 136 0.319083 TACCAACGAAGGTGTGCGAT 59.681 50.0 12.64 0.0 43.14 4.58 F
247 248 0.323629 GGACCGTTCCCAGTGAATGA 59.676 55.0 0.00 0.0 41.68 2.57 F
375 376 0.328258 CCTCCCGAGGTGGAATTGTT 59.672 55.0 2.31 0.0 43.61 2.83 F
913 1208 0.335019 GGCCCCATCCCTACAAAAGT 59.665 55.0 0.00 0.0 0.00 2.66 F
1296 1591 0.602106 CGCTCCTCATCGCCATCAAT 60.602 55.0 0.00 0.0 0.00 2.57 F
2491 3896 0.106708 TCACCAAGACGCAGCTCTTT 59.893 50.0 4.81 0.0 0.00 2.52 F
3347 4753 0.039618 TCATTCCAAAGGGTCTGGGC 59.960 55.0 0.00 0.0 34.46 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1868 3263 0.106149 GTATGGAATCGGGTTCGGCT 59.894 55.000 0.0 0.00 37.73 5.52 R
1869 3264 0.179067 TGTATGGAATCGGGTTCGGC 60.179 55.000 0.0 0.00 37.73 5.54 R
1870 3265 2.319136 TTGTATGGAATCGGGTTCGG 57.681 50.000 0.0 0.00 37.73 4.30 R
1871 3266 3.267483 AGTTTGTATGGAATCGGGTTCG 58.733 45.455 0.0 0.00 37.73 3.95 R
2468 3873 1.595382 GCTGCGTCTTGGTGAGTGT 60.595 57.895 0.0 0.00 0.00 3.55 R
3105 4511 0.604578 TTCGCCTAGTGTTTACGGCT 59.395 50.000 0.0 0.00 40.34 5.52 R
3953 5359 0.032540 GGTGCCTGTTTTGCCTTCTG 59.967 55.000 0.0 0.00 0.00 3.02 R
4474 5966 0.179006 TGGCTGTGCACATTACACCA 60.179 50.000 22.0 18.78 37.22 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.654793 TTCGAACAATTTTTGAAAACAGGG 57.345 33.333 0.00 0.00 0.00 4.45
24 25 5.967088 TCGAACAATTTTTGAAAACAGGGA 58.033 33.333 0.00 0.00 0.00 4.20
25 26 5.808030 TCGAACAATTTTTGAAAACAGGGAC 59.192 36.000 0.00 0.00 0.00 4.46
26 27 5.578727 CGAACAATTTTTGAAAACAGGGACA 59.421 36.000 0.00 0.00 0.00 4.02
27 28 6.091441 CGAACAATTTTTGAAAACAGGGACAA 59.909 34.615 0.00 0.00 0.00 3.18
28 29 7.201600 CGAACAATTTTTGAAAACAGGGACAAT 60.202 33.333 0.00 0.00 0.00 2.71
29 30 7.936496 ACAATTTTTGAAAACAGGGACAATT 57.064 28.000 0.00 0.00 0.00 2.32
30 31 8.347004 ACAATTTTTGAAAACAGGGACAATTT 57.653 26.923 0.00 0.00 0.00 1.82
31 32 8.801299 ACAATTTTTGAAAACAGGGACAATTTT 58.199 25.926 0.00 0.00 31.79 1.82
32 33 9.636879 CAATTTTTGAAAACAGGGACAATTTTT 57.363 25.926 0.00 0.00 29.78 1.94
33 34 9.636879 AATTTTTGAAAACAGGGACAATTTTTG 57.363 25.926 0.00 0.00 29.78 2.44
34 35 7.986085 TTTTGAAAACAGGGACAATTTTTGA 57.014 28.000 0.00 0.00 29.78 2.69
35 36 7.986085 TTTGAAAACAGGGACAATTTTTGAA 57.014 28.000 0.00 0.00 29.78 2.69
36 37 7.986085 TTGAAAACAGGGACAATTTTTGAAA 57.014 28.000 0.00 0.00 29.78 2.69
37 38 7.608308 TGAAAACAGGGACAATTTTTGAAAG 57.392 32.000 0.00 0.00 29.78 2.62
38 39 6.093357 TGAAAACAGGGACAATTTTTGAAAGC 59.907 34.615 0.00 0.00 29.78 3.51
39 40 4.751767 ACAGGGACAATTTTTGAAAGCA 57.248 36.364 0.00 0.00 0.00 3.91
40 41 4.441792 ACAGGGACAATTTTTGAAAGCAC 58.558 39.130 0.00 0.00 0.00 4.40
41 42 4.081198 ACAGGGACAATTTTTGAAAGCACA 60.081 37.500 0.00 0.00 0.00 4.57
42 43 4.508861 CAGGGACAATTTTTGAAAGCACAG 59.491 41.667 0.00 0.00 0.00 3.66
43 44 4.162131 AGGGACAATTTTTGAAAGCACAGT 59.838 37.500 0.00 0.00 0.00 3.55
44 45 5.362430 AGGGACAATTTTTGAAAGCACAGTA 59.638 36.000 0.00 0.00 0.00 2.74
45 46 6.045955 GGGACAATTTTTGAAAGCACAGTAA 58.954 36.000 0.00 0.00 0.00 2.24
46 47 6.200854 GGGACAATTTTTGAAAGCACAGTAAG 59.799 38.462 0.00 0.00 0.00 2.34
47 48 6.200854 GGACAATTTTTGAAAGCACAGTAAGG 59.799 38.462 0.00 0.00 0.00 2.69
48 49 6.872920 ACAATTTTTGAAAGCACAGTAAGGA 58.127 32.000 0.00 0.00 0.00 3.36
49 50 7.327214 ACAATTTTTGAAAGCACAGTAAGGAA 58.673 30.769 0.00 0.00 0.00 3.36
50 51 7.277760 ACAATTTTTGAAAGCACAGTAAGGAAC 59.722 33.333 0.00 0.00 0.00 3.62
51 52 4.911514 TTTGAAAGCACAGTAAGGAACC 57.088 40.909 0.00 0.00 0.00 3.62
52 53 3.569194 TGAAAGCACAGTAAGGAACCA 57.431 42.857 0.00 0.00 0.00 3.67
53 54 4.098914 TGAAAGCACAGTAAGGAACCAT 57.901 40.909 0.00 0.00 0.00 3.55
54 55 4.072131 TGAAAGCACAGTAAGGAACCATC 58.928 43.478 0.00 0.00 0.00 3.51
55 56 2.789409 AGCACAGTAAGGAACCATCC 57.211 50.000 0.00 0.00 46.98 3.51
72 73 4.708726 CATCCAGATGGTTCTCAAAACC 57.291 45.455 0.00 0.00 40.67 3.27
80 81 4.935352 TGGTTCTCAAAACCAGAAATGG 57.065 40.909 5.56 0.00 44.74 3.16
81 82 4.285863 TGGTTCTCAAAACCAGAAATGGT 58.714 39.130 5.56 0.00 44.74 3.55
82 83 4.340950 TGGTTCTCAAAACCAGAAATGGTC 59.659 41.667 5.56 0.00 44.74 4.02
83 84 4.537015 GTTCTCAAAACCAGAAATGGTCG 58.463 43.478 0.00 0.00 42.20 4.79
84 85 2.552315 TCTCAAAACCAGAAATGGTCGC 59.448 45.455 0.00 0.00 42.20 5.19
85 86 2.293122 CTCAAAACCAGAAATGGTCGCA 59.707 45.455 0.00 0.00 42.20 5.10
86 87 2.034053 TCAAAACCAGAAATGGTCGCAC 59.966 45.455 0.00 0.00 42.20 5.34
87 88 0.591170 AAACCAGAAATGGTCGCACG 59.409 50.000 0.00 0.00 42.20 5.34
88 89 1.234615 AACCAGAAATGGTCGCACGG 61.235 55.000 0.00 0.00 42.20 4.94
89 90 1.375396 CCAGAAATGGTCGCACGGA 60.375 57.895 0.00 0.00 0.00 4.69
90 91 0.953471 CCAGAAATGGTCGCACGGAA 60.953 55.000 0.00 0.00 0.00 4.30
91 92 0.871722 CAGAAATGGTCGCACGGAAA 59.128 50.000 0.00 0.00 0.00 3.13
92 93 1.265635 CAGAAATGGTCGCACGGAAAA 59.734 47.619 0.00 0.00 0.00 2.29
93 94 1.950909 AGAAATGGTCGCACGGAAAAA 59.049 42.857 0.00 0.00 0.00 1.94
111 112 0.969149 AAAAAGCTAACTGGCTGGCC 59.031 50.000 4.43 4.43 42.24 5.36
112 113 0.900182 AAAAGCTAACTGGCTGGCCC 60.900 55.000 9.28 0.00 42.24 5.80
113 114 2.080336 AAAGCTAACTGGCTGGCCCA 62.080 55.000 9.28 0.00 42.24 5.36
114 115 1.867595 AAGCTAACTGGCTGGCCCAT 61.868 55.000 9.28 0.00 44.33 4.00
115 116 2.123428 GCTAACTGGCTGGCCCATG 61.123 63.158 9.28 2.42 44.33 3.66
116 117 1.304282 CTAACTGGCTGGCCCATGT 59.696 57.895 9.28 3.02 44.33 3.21
117 118 0.546122 CTAACTGGCTGGCCCATGTA 59.454 55.000 9.28 0.00 44.33 2.29
118 119 0.254747 TAACTGGCTGGCCCATGTAC 59.745 55.000 9.28 0.00 44.33 2.90
119 120 2.124151 CTGGCTGGCCCATGTACC 60.124 66.667 9.28 0.00 44.33 3.34
120 121 2.938243 TGGCTGGCCCATGTACCA 60.938 61.111 9.28 4.07 39.18 3.25
121 122 2.358619 GGCTGGCCCATGTACCAA 59.641 61.111 0.00 0.00 34.96 3.67
122 123 2.052104 GGCTGGCCCATGTACCAAC 61.052 63.158 0.00 1.48 34.96 3.77
123 124 2.406616 GCTGGCCCATGTACCAACG 61.407 63.158 0.00 0.00 34.96 4.10
124 125 1.298340 CTGGCCCATGTACCAACGA 59.702 57.895 0.00 0.00 34.96 3.85
125 126 0.322098 CTGGCCCATGTACCAACGAA 60.322 55.000 0.00 0.00 34.96 3.85
126 127 0.322098 TGGCCCATGTACCAACGAAG 60.322 55.000 0.00 0.00 31.46 3.79
127 128 1.029947 GGCCCATGTACCAACGAAGG 61.030 60.000 0.00 0.00 0.00 3.46
128 129 0.322187 GCCCATGTACCAACGAAGGT 60.322 55.000 8.48 8.48 45.72 3.50
129 130 1.448985 CCCATGTACCAACGAAGGTG 58.551 55.000 12.64 0.00 43.14 4.00
130 131 1.271163 CCCATGTACCAACGAAGGTGT 60.271 52.381 12.64 0.00 43.14 4.16
131 132 1.804151 CCATGTACCAACGAAGGTGTG 59.196 52.381 12.64 8.90 43.14 3.82
132 133 1.196808 CATGTACCAACGAAGGTGTGC 59.803 52.381 12.64 5.03 43.14 4.57
133 134 0.876777 TGTACCAACGAAGGTGTGCG 60.877 55.000 12.64 0.00 43.14 5.34
134 135 0.598158 GTACCAACGAAGGTGTGCGA 60.598 55.000 12.64 0.00 43.14 5.10
135 136 0.319083 TACCAACGAAGGTGTGCGAT 59.681 50.000 12.64 0.00 43.14 4.58
136 137 0.319083 ACCAACGAAGGTGTGCGATA 59.681 50.000 2.83 0.00 41.30 2.92
137 138 0.719465 CCAACGAAGGTGTGCGATAC 59.281 55.000 0.00 0.00 0.00 2.24
138 139 0.719465 CAACGAAGGTGTGCGATACC 59.281 55.000 0.00 0.00 38.52 2.73
142 143 4.331622 AGGTGTGCGATACCTCGA 57.668 55.556 0.00 0.00 45.19 4.04
143 144 1.807886 AGGTGTGCGATACCTCGAC 59.192 57.895 0.00 0.00 45.19 4.20
144 145 0.963856 AGGTGTGCGATACCTCGACA 60.964 55.000 0.00 0.00 45.19 4.35
145 146 2.494936 AGGTGTGCGATACCTCGACAA 61.495 52.381 0.00 0.00 45.19 3.18
146 147 4.595134 AGGTGTGCGATACCTCGACAAC 62.595 54.545 0.00 3.89 45.19 3.32
172 173 1.967319 CAGTATGCGGCAAATAGGGT 58.033 50.000 6.82 0.00 0.00 4.34
173 174 2.297701 CAGTATGCGGCAAATAGGGTT 58.702 47.619 6.82 0.00 0.00 4.11
174 175 2.687935 CAGTATGCGGCAAATAGGGTTT 59.312 45.455 6.82 0.00 0.00 3.27
175 176 3.130340 CAGTATGCGGCAAATAGGGTTTT 59.870 43.478 6.82 0.00 0.00 2.43
176 177 2.959507 ATGCGGCAAATAGGGTTTTC 57.040 45.000 6.82 0.00 0.00 2.29
177 178 1.917872 TGCGGCAAATAGGGTTTTCT 58.082 45.000 0.00 0.00 0.00 2.52
178 179 3.074675 TGCGGCAAATAGGGTTTTCTA 57.925 42.857 0.00 0.00 0.00 2.10
179 180 3.013921 TGCGGCAAATAGGGTTTTCTAG 58.986 45.455 0.00 0.00 0.00 2.43
180 181 2.357952 GCGGCAAATAGGGTTTTCTAGG 59.642 50.000 0.00 0.00 0.00 3.02
181 182 2.949644 CGGCAAATAGGGTTTTCTAGGG 59.050 50.000 0.00 0.00 0.00 3.53
182 183 3.371166 CGGCAAATAGGGTTTTCTAGGGA 60.371 47.826 0.00 0.00 0.00 4.20
183 184 4.207955 GGCAAATAGGGTTTTCTAGGGAG 58.792 47.826 0.00 0.00 0.00 4.30
184 185 4.207955 GCAAATAGGGTTTTCTAGGGAGG 58.792 47.826 0.00 0.00 0.00 4.30
185 186 4.079958 GCAAATAGGGTTTTCTAGGGAGGA 60.080 45.833 0.00 0.00 0.00 3.71
186 187 5.685728 CAAATAGGGTTTTCTAGGGAGGAG 58.314 45.833 0.00 0.00 0.00 3.69
187 188 4.645968 ATAGGGTTTTCTAGGGAGGAGT 57.354 45.455 0.00 0.00 0.00 3.85
188 189 3.293215 AGGGTTTTCTAGGGAGGAGTT 57.707 47.619 0.00 0.00 0.00 3.01
189 190 3.610260 AGGGTTTTCTAGGGAGGAGTTT 58.390 45.455 0.00 0.00 0.00 2.66
190 191 3.587951 AGGGTTTTCTAGGGAGGAGTTTC 59.412 47.826 0.00 0.00 0.00 2.78
191 192 3.587951 GGGTTTTCTAGGGAGGAGTTTCT 59.412 47.826 0.00 0.00 0.00 2.52
192 193 4.043059 GGGTTTTCTAGGGAGGAGTTTCTT 59.957 45.833 0.00 0.00 0.00 2.52
193 194 5.457778 GGGTTTTCTAGGGAGGAGTTTCTTT 60.458 44.000 0.00 0.00 0.00 2.52
194 195 5.473846 GGTTTTCTAGGGAGGAGTTTCTTTG 59.526 44.000 0.00 0.00 0.00 2.77
195 196 4.910458 TTCTAGGGAGGAGTTTCTTTGG 57.090 45.455 0.00 0.00 0.00 3.28
196 197 4.141990 TCTAGGGAGGAGTTTCTTTGGA 57.858 45.455 0.00 0.00 0.00 3.53
197 198 4.097418 TCTAGGGAGGAGTTTCTTTGGAG 58.903 47.826 0.00 0.00 0.00 3.86
198 199 1.988846 AGGGAGGAGTTTCTTTGGAGG 59.011 52.381 0.00 0.00 0.00 4.30
199 200 1.004862 GGGAGGAGTTTCTTTGGAGGG 59.995 57.143 0.00 0.00 0.00 4.30
200 201 1.985895 GGAGGAGTTTCTTTGGAGGGA 59.014 52.381 0.00 0.00 0.00 4.20
201 202 2.578480 GGAGGAGTTTCTTTGGAGGGAT 59.422 50.000 0.00 0.00 0.00 3.85
202 203 3.010696 GGAGGAGTTTCTTTGGAGGGATT 59.989 47.826 0.00 0.00 0.00 3.01
203 204 4.509302 GGAGGAGTTTCTTTGGAGGGATTT 60.509 45.833 0.00 0.00 0.00 2.17
204 205 4.667573 AGGAGTTTCTTTGGAGGGATTTC 58.332 43.478 0.00 0.00 0.00 2.17
205 206 4.106341 AGGAGTTTCTTTGGAGGGATTTCA 59.894 41.667 0.00 0.00 0.00 2.69
206 207 4.218635 GGAGTTTCTTTGGAGGGATTTCAC 59.781 45.833 0.00 0.00 0.00 3.18
207 208 4.152647 AGTTTCTTTGGAGGGATTTCACC 58.847 43.478 0.00 0.00 0.00 4.02
219 220 4.292977 GGATTTCACCCATCGAACATTC 57.707 45.455 0.00 0.00 0.00 2.67
229 230 1.840061 CGAACATTCGCTCGATCGG 59.160 57.895 16.41 7.26 44.26 4.18
230 231 0.591488 CGAACATTCGCTCGATCGGA 60.591 55.000 16.41 0.00 44.26 4.55
231 232 0.847035 GAACATTCGCTCGATCGGAC 59.153 55.000 16.41 6.75 0.00 4.79
232 233 0.527817 AACATTCGCTCGATCGGACC 60.528 55.000 16.41 2.94 0.00 4.46
233 234 2.011349 CATTCGCTCGATCGGACCG 61.011 63.158 16.41 7.84 0.00 4.79
234 235 2.478890 ATTCGCTCGATCGGACCGT 61.479 57.895 16.41 0.67 0.00 4.83
235 236 2.001361 ATTCGCTCGATCGGACCGTT 62.001 55.000 16.41 5.25 0.00 4.44
236 237 2.588146 TTCGCTCGATCGGACCGTTC 62.588 60.000 16.41 14.28 0.00 3.95
237 238 2.278661 GCTCGATCGGACCGTTCC 60.279 66.667 16.41 3.43 38.77 3.62
238 239 2.412112 CTCGATCGGACCGTTCCC 59.588 66.667 16.41 0.90 38.99 3.97
239 240 2.361483 TCGATCGGACCGTTCCCA 60.361 61.111 16.41 0.50 38.99 4.37
240 241 2.104331 CGATCGGACCGTTCCCAG 59.896 66.667 14.79 0.00 38.99 4.45
241 242 2.707849 CGATCGGACCGTTCCCAGT 61.708 63.158 14.79 0.00 38.99 4.00
242 243 1.153628 GATCGGACCGTTCCCAGTG 60.154 63.158 14.79 0.00 38.99 3.66
243 244 1.601419 GATCGGACCGTTCCCAGTGA 61.601 60.000 14.79 0.00 38.99 3.41
244 245 1.189524 ATCGGACCGTTCCCAGTGAA 61.190 55.000 14.79 0.00 38.99 3.18
245 246 1.189524 TCGGACCGTTCCCAGTGAAT 61.190 55.000 14.79 0.00 38.99 2.57
246 247 1.019278 CGGACCGTTCCCAGTGAATG 61.019 60.000 5.48 0.00 38.99 2.67
247 248 0.323629 GGACCGTTCCCAGTGAATGA 59.676 55.000 0.00 0.00 41.68 2.57
248 249 1.271163 GGACCGTTCCCAGTGAATGAA 60.271 52.381 0.00 0.00 41.68 2.57
249 250 2.618045 GGACCGTTCCCAGTGAATGAAT 60.618 50.000 0.00 0.00 41.68 2.57
250 251 2.678336 GACCGTTCCCAGTGAATGAATC 59.322 50.000 0.00 0.00 41.68 2.52
251 252 1.665679 CCGTTCCCAGTGAATGAATCG 59.334 52.381 0.00 0.00 41.68 3.34
252 253 2.346803 CGTTCCCAGTGAATGAATCGT 58.653 47.619 0.00 0.00 41.68 3.73
253 254 2.742053 CGTTCCCAGTGAATGAATCGTT 59.258 45.455 0.00 0.00 41.68 3.85
254 255 3.181520 CGTTCCCAGTGAATGAATCGTTC 60.182 47.826 8.19 8.19 41.68 3.95
255 256 2.616960 TCCCAGTGAATGAATCGTTCG 58.383 47.619 10.25 0.00 32.58 3.95
256 257 2.028476 TCCCAGTGAATGAATCGTTCGT 60.028 45.455 10.25 0.00 32.58 3.85
257 258 3.193903 TCCCAGTGAATGAATCGTTCGTA 59.806 43.478 10.25 0.00 32.58 3.43
258 259 4.119862 CCCAGTGAATGAATCGTTCGTAT 58.880 43.478 10.25 0.00 32.58 3.06
259 260 4.570772 CCCAGTGAATGAATCGTTCGTATT 59.429 41.667 10.25 0.00 32.58 1.89
260 261 5.492854 CCAGTGAATGAATCGTTCGTATTG 58.507 41.667 10.25 6.07 32.58 1.90
261 262 4.957967 CAGTGAATGAATCGTTCGTATTGC 59.042 41.667 10.25 0.00 32.58 3.56
262 263 4.870426 AGTGAATGAATCGTTCGTATTGCT 59.130 37.500 10.25 0.31 32.58 3.91
263 264 6.019881 CAGTGAATGAATCGTTCGTATTGCTA 60.020 38.462 10.25 0.00 32.58 3.49
264 265 6.701841 AGTGAATGAATCGTTCGTATTGCTAT 59.298 34.615 10.25 0.00 32.58 2.97
265 266 7.224753 AGTGAATGAATCGTTCGTATTGCTATT 59.775 33.333 10.25 0.00 32.58 1.73
266 267 7.850982 GTGAATGAATCGTTCGTATTGCTATTT 59.149 33.333 10.25 0.00 32.58 1.40
267 268 8.394877 TGAATGAATCGTTCGTATTGCTATTTT 58.605 29.630 10.25 0.00 32.58 1.82
268 269 9.221775 GAATGAATCGTTCGTATTGCTATTTTT 57.778 29.630 0.00 0.00 0.00 1.94
287 288 4.974368 TTTTCAGTTTTGTCATGTCGGT 57.026 36.364 0.00 0.00 0.00 4.69
288 289 4.545823 TTTCAGTTTTGTCATGTCGGTC 57.454 40.909 0.00 0.00 0.00 4.79
289 290 2.489971 TCAGTTTTGTCATGTCGGTCC 58.510 47.619 0.00 0.00 0.00 4.46
290 291 2.104111 TCAGTTTTGTCATGTCGGTCCT 59.896 45.455 0.00 0.00 0.00 3.85
291 292 2.878406 CAGTTTTGTCATGTCGGTCCTT 59.122 45.455 0.00 0.00 0.00 3.36
292 293 4.062293 CAGTTTTGTCATGTCGGTCCTTA 58.938 43.478 0.00 0.00 0.00 2.69
293 294 4.695455 CAGTTTTGTCATGTCGGTCCTTAT 59.305 41.667 0.00 0.00 0.00 1.73
294 295 4.695455 AGTTTTGTCATGTCGGTCCTTATG 59.305 41.667 0.00 0.00 0.00 1.90
295 296 3.973206 TTGTCATGTCGGTCCTTATGT 57.027 42.857 0.00 0.00 0.00 2.29
296 297 3.245518 TGTCATGTCGGTCCTTATGTG 57.754 47.619 0.00 0.00 0.00 3.21
297 298 2.829120 TGTCATGTCGGTCCTTATGTGA 59.171 45.455 0.00 0.00 0.00 3.58
298 299 3.450817 TGTCATGTCGGTCCTTATGTGAT 59.549 43.478 0.00 0.00 0.00 3.06
299 300 4.081142 TGTCATGTCGGTCCTTATGTGATT 60.081 41.667 0.00 0.00 0.00 2.57
300 301 4.876107 GTCATGTCGGTCCTTATGTGATTT 59.124 41.667 0.00 0.00 0.00 2.17
301 302 4.875536 TCATGTCGGTCCTTATGTGATTTG 59.124 41.667 0.00 0.00 0.00 2.32
302 303 4.280436 TGTCGGTCCTTATGTGATTTGT 57.720 40.909 0.00 0.00 0.00 2.83
303 304 5.408880 TGTCGGTCCTTATGTGATTTGTA 57.591 39.130 0.00 0.00 0.00 2.41
304 305 5.172934 TGTCGGTCCTTATGTGATTTGTAC 58.827 41.667 0.00 0.00 0.00 2.90
305 306 5.046878 TGTCGGTCCTTATGTGATTTGTACT 60.047 40.000 0.00 0.00 0.00 2.73
306 307 5.873164 GTCGGTCCTTATGTGATTTGTACTT 59.127 40.000 0.00 0.00 0.00 2.24
307 308 6.370718 GTCGGTCCTTATGTGATTTGTACTTT 59.629 38.462 0.00 0.00 0.00 2.66
308 309 7.546667 GTCGGTCCTTATGTGATTTGTACTTTA 59.453 37.037 0.00 0.00 0.00 1.85
309 310 8.095792 TCGGTCCTTATGTGATTTGTACTTTAA 58.904 33.333 0.00 0.00 0.00 1.52
310 311 8.889717 CGGTCCTTATGTGATTTGTACTTTAAT 58.110 33.333 0.00 0.00 0.00 1.40
334 335 9.770097 AATCTTTATGATATGAATGAGACACGT 57.230 29.630 0.00 0.00 34.45 4.49
346 347 8.940768 TGAATGAGACACGTATTATCATGAAA 57.059 30.769 0.00 0.00 31.24 2.69
347 348 9.377312 TGAATGAGACACGTATTATCATGAAAA 57.623 29.630 0.00 0.00 31.24 2.29
350 351 8.996024 TGAGACACGTATTATCATGAAAAAGA 57.004 30.769 0.00 0.00 0.00 2.52
351 352 9.430623 TGAGACACGTATTATCATGAAAAAGAA 57.569 29.630 0.00 0.00 0.00 2.52
354 355 8.895932 ACACGTATTATCATGAAAAAGAAAGC 57.104 30.769 0.00 0.00 0.00 3.51
355 356 8.511321 ACACGTATTATCATGAAAAAGAAAGCA 58.489 29.630 0.00 0.00 0.00 3.91
356 357 8.788813 CACGTATTATCATGAAAAAGAAAGCAC 58.211 33.333 0.00 0.00 0.00 4.40
357 358 7.968405 ACGTATTATCATGAAAAAGAAAGCACC 59.032 33.333 0.00 0.00 0.00 5.01
358 359 8.184192 CGTATTATCATGAAAAAGAAAGCACCT 58.816 33.333 0.00 0.00 0.00 4.00
359 360 9.508567 GTATTATCATGAAAAAGAAAGCACCTC 57.491 33.333 0.00 0.00 0.00 3.85
360 361 4.853924 TCATGAAAAAGAAAGCACCTCC 57.146 40.909 0.00 0.00 0.00 4.30
361 362 3.573967 TCATGAAAAAGAAAGCACCTCCC 59.426 43.478 0.00 0.00 0.00 4.30
362 363 1.953686 TGAAAAAGAAAGCACCTCCCG 59.046 47.619 0.00 0.00 0.00 5.14
363 364 2.227194 GAAAAAGAAAGCACCTCCCGA 58.773 47.619 0.00 0.00 0.00 5.14
364 365 1.897560 AAAAGAAAGCACCTCCCGAG 58.102 50.000 0.00 0.00 0.00 4.63
373 374 4.963878 CCTCCCGAGGTGGAATTG 57.036 61.111 2.31 0.00 43.61 2.32
374 375 1.991230 CCTCCCGAGGTGGAATTGT 59.009 57.895 2.31 0.00 43.61 2.71
375 376 0.328258 CCTCCCGAGGTGGAATTGTT 59.672 55.000 2.31 0.00 43.61 2.83
376 377 1.453155 CTCCCGAGGTGGAATTGTTG 58.547 55.000 0.00 0.00 42.00 3.33
377 378 0.608035 TCCCGAGGTGGAATTGTTGC 60.608 55.000 0.00 0.00 42.00 4.17
378 379 1.595093 CCCGAGGTGGAATTGTTGCC 61.595 60.000 0.00 0.00 42.00 4.52
379 380 0.893270 CCGAGGTGGAATTGTTGCCA 60.893 55.000 0.00 0.00 42.00 4.92
380 381 0.958091 CGAGGTGGAATTGTTGCCAA 59.042 50.000 0.00 0.00 35.63 4.52
381 382 1.335872 CGAGGTGGAATTGTTGCCAAC 60.336 52.381 0.00 0.00 42.27 3.77
385 386 4.535526 GGTGGAATTGTTGCCAACTATT 57.464 40.909 15.44 15.44 38.84 1.73
386 387 4.244862 GGTGGAATTGTTGCCAACTATTG 58.755 43.478 19.40 0.00 38.84 1.90
397 398 3.753294 CCAACTATTGGCGTCCTAGAT 57.247 47.619 0.00 0.00 45.17 1.98
398 399 4.073293 CCAACTATTGGCGTCCTAGATT 57.927 45.455 0.00 0.00 45.17 2.40
399 400 4.451900 CCAACTATTGGCGTCCTAGATTT 58.548 43.478 0.00 0.00 45.17 2.17
400 401 4.273480 CCAACTATTGGCGTCCTAGATTTG 59.727 45.833 0.00 1.07 45.17 2.32
430 431 4.792068 TCATCTTATGGATTTCCCCACAC 58.208 43.478 0.00 0.00 39.34 3.82
500 506 5.440610 AGTAATATGGTCTTTGCCTTGAGG 58.559 41.667 0.00 0.00 38.53 3.86
527 533 1.904287 AAAAGCAGGACCGCACAATA 58.096 45.000 10.28 0.00 0.00 1.90
528 534 2.128771 AAAGCAGGACCGCACAATAT 57.871 45.000 10.28 0.00 0.00 1.28
662 676 5.930135 TCTTTTTCTAGCTTCAGTTGGACT 58.070 37.500 0.00 0.00 0.00 3.85
663 677 6.357367 TCTTTTTCTAGCTTCAGTTGGACTT 58.643 36.000 0.00 0.00 0.00 3.01
702 723 4.783621 TGGTGCTCCATCCGCTGC 62.784 66.667 2.64 0.00 39.03 5.25
712 733 2.117156 ATCCGCTGCCAGTGAATGC 61.117 57.895 6.88 0.00 0.00 3.56
727 748 1.592081 GAATGCTCTGCACGTCATCTC 59.408 52.381 0.00 0.00 43.04 2.75
745 766 1.667724 CTCAACGATGTTCCAGGATGC 59.332 52.381 0.00 0.00 31.97 3.91
769 826 7.150783 CTTCTTCCATCTAAAAAGAAGGGTG 57.849 40.000 13.64 0.00 46.29 4.61
770 827 6.448369 TCTTCCATCTAAAAAGAAGGGTGA 57.552 37.500 0.00 0.00 37.05 4.02
771 828 7.032598 TCTTCCATCTAAAAAGAAGGGTGAT 57.967 36.000 0.00 0.00 37.05 3.06
772 829 7.112779 TCTTCCATCTAAAAAGAAGGGTGATC 58.887 38.462 0.00 0.00 37.05 2.92
773 830 5.755849 TCCATCTAAAAAGAAGGGTGATCC 58.244 41.667 0.00 0.00 0.00 3.36
854 1148 0.379669 GATAAGAGCGTCGGGTCGAA 59.620 55.000 0.00 0.00 45.26 3.71
902 1197 1.598130 CGATTTCTCCGGCCCCATC 60.598 63.158 0.00 0.00 0.00 3.51
904 1199 2.698776 GATTTCTCCGGCCCCATCCC 62.699 65.000 0.00 0.00 0.00 3.85
913 1208 0.335019 GGCCCCATCCCTACAAAAGT 59.665 55.000 0.00 0.00 0.00 2.66
965 1260 1.003718 CCCCTTCCACCTCAACGTC 60.004 63.158 0.00 0.00 0.00 4.34
974 1269 4.487948 TCCACCTCAACGTCGTTTTATAG 58.512 43.478 8.15 3.98 0.00 1.31
987 1282 6.567050 GTCGTTTTATAGTACCATCTCACCA 58.433 40.000 0.00 0.00 0.00 4.17
989 1284 5.462398 CGTTTTATAGTACCATCTCACCAGC 59.538 44.000 0.00 0.00 0.00 4.85
1296 1591 0.602106 CGCTCCTCATCGCCATCAAT 60.602 55.000 0.00 0.00 0.00 2.57
1347 1644 3.780624 GAGGCTCTCTCTCGTCTCT 57.219 57.895 7.40 0.00 39.38 3.10
1374 1671 6.461110 AGCCATTGAATTTCAGGACTATTG 57.539 37.500 8.48 0.00 0.00 1.90
1377 1674 6.038356 CCATTGAATTTCAGGACTATTGCAC 58.962 40.000 0.00 0.00 0.00 4.57
1380 1677 6.500684 TGAATTTCAGGACTATTGCACTTC 57.499 37.500 0.00 0.00 0.00 3.01
1398 1695 4.022242 CACTTCTCTGTTCGTCTTCCCTAA 60.022 45.833 0.00 0.00 0.00 2.69
1415 1712 5.636123 TCCCTAAAAATAAGAACACCTGCA 58.364 37.500 0.00 0.00 0.00 4.41
1512 1810 9.555411 AAGTAGGGGTGAACCATTTAAATTATT 57.445 29.630 0.00 0.00 42.91 1.40
1514 1812 7.806680 AGGGGTGAACCATTTAAATTATTGT 57.193 32.000 0.00 0.00 42.91 2.71
1559 1892 8.633561 AGAAGTTAAAAAGGGAGAATTTGTCAG 58.366 33.333 0.00 0.00 0.00 3.51
1596 1938 7.452562 AGGAGAATTTTGTTATTTGGCATTGT 58.547 30.769 0.00 0.00 0.00 2.71
1700 3092 8.602328 GTTTCACATCATTCTCTTCTATGTCTG 58.398 37.037 0.00 0.00 0.00 3.51
1703 3095 6.762187 CACATCATTCTCTTCTATGTCTGCTT 59.238 38.462 0.00 0.00 0.00 3.91
1763 3158 8.568617 AGGACATAATTAACCTGTTAGGAGAT 57.431 34.615 1.13 0.00 37.67 2.75
1764 3159 8.432805 AGGACATAATTAACCTGTTAGGAGATG 58.567 37.037 1.13 0.00 37.67 2.90
1774 3169 7.784470 ACCTGTTAGGAGATGATATCCTTAC 57.216 40.000 14.55 15.40 45.13 2.34
1811 3206 9.877222 TTTACTAGTGATAGATTCCATACTCCA 57.123 33.333 5.39 0.00 0.00 3.86
1814 3209 9.693739 ACTAGTGATAGATTCCATACTCCATAG 57.306 37.037 0.00 0.00 0.00 2.23
1815 3210 9.693739 CTAGTGATAGATTCCATACTCCATAGT 57.306 37.037 0.00 0.00 39.91 2.12
1816 3211 8.359875 AGTGATAGATTCCATACTCCATAGTG 57.640 38.462 0.00 0.00 36.36 2.74
1817 3212 8.173412 AGTGATAGATTCCATACTCCATAGTGA 58.827 37.037 0.00 0.00 36.36 3.41
1818 3213 8.976353 GTGATAGATTCCATACTCCATAGTGAT 58.024 37.037 0.00 0.00 36.36 3.06
1823 3218 9.420118 AGATTCCATACTCCATAGTGATATCTC 57.580 37.037 3.98 0.00 36.36 2.75
1824 3219 9.420118 GATTCCATACTCCATAGTGATATCTCT 57.580 37.037 11.77 11.77 36.36 3.10
1825 3220 9.781425 ATTCCATACTCCATAGTGATATCTCTT 57.219 33.333 12.28 0.00 36.36 2.85
1831 3226 7.846066 ACTCCATAGTGATATCTCTTATTGGC 58.154 38.462 12.28 0.00 33.57 4.52
1832 3227 7.093112 ACTCCATAGTGATATCTCTTATTGGCC 60.093 40.741 12.28 0.00 33.57 5.36
1833 3228 6.156949 TCCATAGTGATATCTCTTATTGGCCC 59.843 42.308 12.28 0.00 0.00 5.80
1834 3229 6.157645 CCATAGTGATATCTCTTATTGGCCCT 59.842 42.308 12.28 0.00 0.00 5.19
1835 3230 5.495926 AGTGATATCTCTTATTGGCCCTG 57.504 43.478 0.00 0.00 0.00 4.45
1836 3231 4.006319 GTGATATCTCTTATTGGCCCTGC 58.994 47.826 0.00 0.00 0.00 4.85
1837 3232 3.652387 TGATATCTCTTATTGGCCCTGCA 59.348 43.478 0.00 0.00 0.00 4.41
1838 3233 2.355010 ATCTCTTATTGGCCCTGCAC 57.645 50.000 0.00 0.00 0.00 4.57
1839 3234 0.991146 TCTCTTATTGGCCCTGCACA 59.009 50.000 0.00 0.00 0.00 4.57
1840 3235 1.354031 TCTCTTATTGGCCCTGCACAA 59.646 47.619 0.00 0.00 0.00 3.33
1841 3236 2.025037 TCTCTTATTGGCCCTGCACAAT 60.025 45.455 0.00 5.69 40.21 2.71
1842 3237 3.201930 TCTCTTATTGGCCCTGCACAATA 59.798 43.478 0.00 3.95 38.24 1.90
1843 3238 4.141181 TCTCTTATTGGCCCTGCACAATAT 60.141 41.667 0.00 0.00 38.80 1.28
1844 3239 4.545678 TCTTATTGGCCCTGCACAATATT 58.454 39.130 0.00 0.00 38.80 1.28
1845 3240 4.961730 TCTTATTGGCCCTGCACAATATTT 59.038 37.500 0.00 0.00 38.80 1.40
1846 3241 3.825143 ATTGGCCCTGCACAATATTTC 57.175 42.857 0.00 0.00 35.67 2.17
1847 3242 1.484038 TGGCCCTGCACAATATTTCC 58.516 50.000 0.00 0.00 0.00 3.13
1848 3243 1.006998 TGGCCCTGCACAATATTTCCT 59.993 47.619 0.00 0.00 0.00 3.36
1849 3244 2.243478 TGGCCCTGCACAATATTTCCTA 59.757 45.455 0.00 0.00 0.00 2.94
1850 3245 2.623416 GGCCCTGCACAATATTTCCTAC 59.377 50.000 0.00 0.00 0.00 3.18
1851 3246 3.287222 GCCCTGCACAATATTTCCTACA 58.713 45.455 0.00 0.00 0.00 2.74
1852 3247 3.316308 GCCCTGCACAATATTTCCTACAG 59.684 47.826 0.00 0.00 0.00 2.74
1853 3248 3.885297 CCCTGCACAATATTTCCTACAGG 59.115 47.826 10.64 10.64 42.47 4.00
1854 3249 3.885297 CCTGCACAATATTTCCTACAGGG 59.115 47.826 10.07 0.00 39.80 4.45
1855 3250 4.385199 CCTGCACAATATTTCCTACAGGGA 60.385 45.833 10.07 0.00 43.41 4.20
1856 3251 4.780815 TGCACAATATTTCCTACAGGGAG 58.219 43.478 0.00 0.00 46.01 4.30
1857 3252 3.565902 GCACAATATTTCCTACAGGGAGC 59.434 47.826 0.00 0.00 46.01 4.70
1858 3253 4.137543 CACAATATTTCCTACAGGGAGCC 58.862 47.826 0.00 0.00 46.01 4.70
1859 3254 3.138468 ACAATATTTCCTACAGGGAGCCC 59.862 47.826 0.00 0.00 46.01 5.19
1860 3255 1.420430 TATTTCCTACAGGGAGCCCG 58.580 55.000 0.00 0.00 46.01 6.13
1861 3256 1.345715 ATTTCCTACAGGGAGCCCGG 61.346 60.000 4.03 4.03 46.01 5.73
1864 3259 3.854669 CTACAGGGAGCCCGGCAG 61.855 72.222 13.15 0.00 41.95 4.85
1882 3277 2.174319 GCTGAGCCGAACCCGATTC 61.174 63.158 0.00 0.00 38.22 2.52
1928 3323 9.844790 TTTGTCATTTGTAGATAAGATTGCTTG 57.155 29.630 0.00 0.00 35.56 4.01
1947 3342 4.034975 GCTTGATCTCAGATAGTTTGTGCC 59.965 45.833 0.00 0.00 0.00 5.01
1948 3343 4.824479 TGATCTCAGATAGTTTGTGCCA 57.176 40.909 0.00 0.00 0.00 4.92
1957 3353 7.988737 TCAGATAGTTTGTGCCAGATATTTTG 58.011 34.615 0.00 0.00 0.00 2.44
1966 3362 4.736793 GTGCCAGATATTTTGATTCTTGCG 59.263 41.667 0.00 0.00 32.44 4.85
2040 3437 5.643348 TGAAGCTAGAAACATATGGTGTGTG 59.357 40.000 7.80 0.00 41.14 3.82
2120 3517 2.095059 GCATGACAGTCACAAACCCATC 60.095 50.000 5.05 0.00 0.00 3.51
2123 3520 2.365941 TGACAGTCACAAACCCATCGTA 59.634 45.455 0.00 0.00 0.00 3.43
2136 3533 4.887748 ACCCATCGTAGCATTATTCTCAG 58.112 43.478 0.00 0.00 0.00 3.35
2151 3548 0.803768 CTCAGGATCTGCACCGAACG 60.804 60.000 0.00 0.00 0.00 3.95
2152 3549 1.079819 CAGGATCTGCACCGAACGT 60.080 57.895 0.00 0.00 0.00 3.99
2153 3550 1.079819 AGGATCTGCACCGAACGTG 60.080 57.895 0.00 0.00 46.03 4.49
2154 3551 1.374252 GGATCTGCACCGAACGTGT 60.374 57.895 0.00 0.00 44.97 4.49
2155 3552 1.352156 GGATCTGCACCGAACGTGTC 61.352 60.000 0.00 0.00 44.97 3.67
2159 3556 1.151777 CTGCACCGAACGTGTCTGTT 61.152 55.000 0.00 0.00 44.97 3.16
2168 3565 4.492247 CCGAACGTGTCTGTTTTAACGAAA 60.492 41.667 0.57 0.00 39.27 3.46
2172 3569 6.109320 ACGTGTCTGTTTTAACGAAAATCA 57.891 33.333 0.57 0.00 36.92 2.57
2491 3896 0.106708 TCACCAAGACGCAGCTCTTT 59.893 50.000 4.81 0.00 0.00 2.52
2812 4218 2.788640 GCGCCTATACCGGTGGACA 61.789 63.158 19.93 0.00 35.11 4.02
2821 4227 1.046472 ACCGGTGGACAAGAGACACA 61.046 55.000 6.12 0.00 36.87 3.72
2913 4319 3.055021 TGGACGGCCTGTATTCAATACAA 60.055 43.478 9.82 0.00 44.44 2.41
2968 4374 6.932400 TGTTTAGTCGGAAATCAAGAGCTTTA 59.068 34.615 0.00 0.00 0.00 1.85
2975 4381 6.475727 TCGGAAATCAAGAGCTTTACTAATCG 59.524 38.462 0.00 0.00 0.00 3.34
2982 4388 7.548097 TCAAGAGCTTTACTAATCGATTCACT 58.452 34.615 15.25 2.80 0.00 3.41
2984 4390 6.276847 AGAGCTTTACTAATCGATTCACTGG 58.723 40.000 15.25 3.54 0.00 4.00
3055 4461 8.877864 ATTTATCCACAAACAACATCTCCTAA 57.122 30.769 0.00 0.00 0.00 2.69
3067 4473 6.594159 ACAACATCTCCTAAAGGAATTACACG 59.406 38.462 0.00 0.00 44.91 4.49
3072 4478 6.168389 TCTCCTAAAGGAATTACACGGTTTC 58.832 40.000 0.00 0.00 44.91 2.78
3098 4504 5.338365 GCAAAGATGAGCTAGTTCATTTGG 58.662 41.667 24.79 18.04 37.90 3.28
3105 4511 6.605471 TGAGCTAGTTCATTTGGTTCTCTA 57.395 37.500 5.01 0.00 0.00 2.43
3108 4514 4.572795 GCTAGTTCATTTGGTTCTCTAGCC 59.427 45.833 9.29 0.00 41.33 3.93
3113 4519 5.155278 TCATTTGGTTCTCTAGCCGTAAA 57.845 39.130 0.00 0.00 0.00 2.01
3138 4544 6.030228 CACTAGGCGAAATTCCTCAAAATTC 58.970 40.000 0.00 0.00 35.21 2.17
3175 4581 5.877012 TGAATCTCATTCAAAGTGGTAGCTC 59.123 40.000 0.00 0.00 45.57 4.09
3182 4588 2.828520 TCAAAGTGGTAGCTCTCTCCAG 59.171 50.000 0.00 0.00 31.54 3.86
3184 4590 0.686112 AGTGGTAGCTCTCTCCAGGC 60.686 60.000 0.00 0.00 31.54 4.85
3185 4591 0.972983 GTGGTAGCTCTCTCCAGGCA 60.973 60.000 0.00 0.00 31.54 4.75
3189 4595 2.700897 GGTAGCTCTCTCCAGGCAATTA 59.299 50.000 0.00 0.00 0.00 1.40
3193 4599 4.033709 AGCTCTCTCCAGGCAATTAAGTA 58.966 43.478 0.00 0.00 0.00 2.24
3199 4605 5.734720 TCTCCAGGCAATTAAGTACAGAAG 58.265 41.667 0.00 0.00 0.00 2.85
3230 4636 7.049799 ACTTATTAACCACAACTTGTGCATT 57.950 32.000 15.42 13.44 46.51 3.56
3236 4642 2.865551 CCACAACTTGTGCATTGGTTTC 59.134 45.455 15.42 0.00 46.51 2.78
3237 4643 2.865551 CACAACTTGTGCATTGGTTTCC 59.134 45.455 8.97 0.00 41.89 3.13
3239 4645 2.865551 CAACTTGTGCATTGGTTTCCAC 59.134 45.455 0.00 0.00 30.78 4.02
3259 4665 2.305927 ACGATCACTTTCCTCAACCCAT 59.694 45.455 0.00 0.00 0.00 4.00
3285 4691 6.420913 TCATAGGCTAATTGTACTCCTTCC 57.579 41.667 0.00 0.00 0.00 3.46
3296 4702 4.347607 TGTACTCCTTCCCTTACCACTAC 58.652 47.826 0.00 0.00 0.00 2.73
3299 4705 2.168728 CTCCTTCCCTTACCACTACTGC 59.831 54.545 0.00 0.00 0.00 4.40
3309 4715 0.179000 CCACTACTGCCTCCATGACC 59.821 60.000 0.00 0.00 0.00 4.02
3313 4719 2.092753 ACTACTGCCTCCATGACCAATG 60.093 50.000 0.00 0.00 35.89 2.82
3332 4738 3.808466 TGCGCTAGATCTCACTTCATT 57.192 42.857 9.73 0.00 0.00 2.57
3340 4746 4.853007 AGATCTCACTTCATTCCAAAGGG 58.147 43.478 0.00 0.00 0.00 3.95
3341 4747 4.290722 AGATCTCACTTCATTCCAAAGGGT 59.709 41.667 0.00 0.00 34.93 4.34
3345 4751 2.821969 CACTTCATTCCAAAGGGTCTGG 59.178 50.000 0.00 0.00 34.93 3.86
3347 4753 0.039618 TCATTCCAAAGGGTCTGGGC 59.960 55.000 0.00 0.00 34.46 5.36
3366 4772 1.901538 CACGGATGAGAGTGTCTTCG 58.098 55.000 0.00 0.00 33.97 3.79
3369 4775 1.468224 CGGATGAGAGTGTCTTCGTGG 60.468 57.143 0.00 0.00 31.35 4.94
3372 4778 3.192844 GGATGAGAGTGTCTTCGTGGTTA 59.807 47.826 0.00 0.00 31.35 2.85
3384 4790 0.107081 CGTGGTTACCAACACCCAGA 59.893 55.000 5.33 0.00 34.18 3.86
3387 4793 0.604511 GGTTACCAACACCCAGACCG 60.605 60.000 0.00 0.00 0.00 4.79
3391 4797 1.004200 CCAACACCCAGACCGGTAC 60.004 63.158 7.34 0.60 33.67 3.34
3396 4802 0.533951 CACCCAGACCGGTACTAACC 59.466 60.000 7.34 0.00 42.95 2.85
3448 4854 9.965902 ACATATTTATCCATCCTTCATACTTCC 57.034 33.333 0.00 0.00 0.00 3.46
3449 4855 9.102757 CATATTTATCCATCCTTCATACTTCCG 57.897 37.037 0.00 0.00 0.00 4.30
3450 4856 2.910688 TCCATCCTTCATACTTCCGC 57.089 50.000 0.00 0.00 0.00 5.54
3472 4878 3.820467 CCTTCTTTGTGTTGTGCAGGATA 59.180 43.478 0.00 0.00 0.00 2.59
3514 4920 2.432972 GCATTGTTTGCGGGCAGG 60.433 61.111 0.00 0.00 42.54 4.85
3519 4925 2.676471 GTTTGCGGGCAGGGATGT 60.676 61.111 0.00 0.00 0.00 3.06
3566 4972 5.122239 TCATTTGAGCTGAGTGATTTAACCG 59.878 40.000 0.00 0.00 0.00 4.44
3735 5141 1.226128 GAGGCTTCGACGCAAATGC 60.226 57.895 16.33 0.00 37.78 3.56
3767 5173 2.655090 TCATGAGTTGGCACCAGAAA 57.345 45.000 0.00 0.00 0.00 2.52
3872 5278 4.498894 AGCATCCATGAAGATGAAGTGA 57.501 40.909 14.10 0.00 45.43 3.41
3883 5289 2.300152 AGATGAAGTGAAGACGCCAGAA 59.700 45.455 0.00 0.00 0.00 3.02
3897 5303 0.535102 CCAGAAGAAACGCCTGGTGT 60.535 55.000 7.16 7.16 41.81 4.16
3922 5328 2.340210 TAAGGAACACAAGCAGCACA 57.660 45.000 0.00 0.00 0.00 4.57
3923 5329 1.473258 AAGGAACACAAGCAGCACAA 58.527 45.000 0.00 0.00 0.00 3.33
3939 5345 3.764466 AAGCGGTGGAGGAGAGCG 61.764 66.667 0.00 0.00 37.38 5.03
3947 5353 0.539669 TGGAGGAGAGCGTGAAGACA 60.540 55.000 0.00 0.00 0.00 3.41
3953 5359 4.681978 AGCGTGAAGACACCGGGC 62.682 66.667 6.32 0.00 43.34 6.13
3991 5397 1.209128 CGGATGTAGATGTGAACGGC 58.791 55.000 0.00 0.00 0.00 5.68
3993 5399 2.803133 CGGATGTAGATGTGAACGGCAT 60.803 50.000 0.00 0.00 0.00 4.40
4029 5436 2.350863 ACAGGAGGATCAAGGGAAGT 57.649 50.000 0.00 0.00 36.25 3.01
4034 5441 0.622665 AGGATCAAGGGAAGTGCCAG 59.377 55.000 0.00 0.00 38.95 4.85
4091 5498 7.164803 AGATGAAGTGGAGAAACTAAAGGAAG 58.835 38.462 0.00 0.00 0.00 3.46
4139 5546 4.504461 CGTAGAGTTGTGCCTATTGATGAC 59.496 45.833 0.00 0.00 0.00 3.06
4288 5779 9.074576 TCTGCAATGCAATAAATGAGAATCTAT 57.925 29.630 9.92 0.00 38.41 1.98
4376 5867 6.866480 ACTTCTATGCAATATTTGGTTGTGG 58.134 36.000 0.00 0.00 0.00 4.17
4380 5871 3.234353 TGCAATATTTGGTTGTGGTGGA 58.766 40.909 0.00 0.00 0.00 4.02
4450 5942 2.694616 AAAAGGGTAGGCACAACCAT 57.305 45.000 6.11 0.00 43.14 3.55
4486 5978 8.868916 CCAAATTTAACTATTGGTGTAATGTGC 58.131 33.333 0.00 0.00 38.99 4.57
4489 5981 7.511959 TTTAACTATTGGTGTAATGTGCACA 57.488 32.000 24.08 24.08 38.51 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.578727 TGTCCCTGTTTTCAAAAATTGTTCG 59.421 36.000 0.00 0.00 0.00 3.95
3 4 6.976636 TGTCCCTGTTTTCAAAAATTGTTC 57.023 33.333 0.00 0.00 0.00 3.18
5 6 7.936496 AATTGTCCCTGTTTTCAAAAATTGT 57.064 28.000 0.00 0.00 0.00 2.71
6 7 9.636879 AAAAATTGTCCCTGTTTTCAAAAATTG 57.363 25.926 0.00 0.00 0.00 2.32
10 11 7.986085 TCAAAAATTGTCCCTGTTTTCAAAA 57.014 28.000 0.00 0.00 0.00 2.44
11 12 7.986085 TTCAAAAATTGTCCCTGTTTTCAAA 57.014 28.000 0.00 0.00 0.00 2.69
12 13 7.361628 GCTTTCAAAAATTGTCCCTGTTTTCAA 60.362 33.333 0.00 0.00 0.00 2.69
13 14 6.093357 GCTTTCAAAAATTGTCCCTGTTTTCA 59.907 34.615 0.00 0.00 0.00 2.69
14 15 6.093357 TGCTTTCAAAAATTGTCCCTGTTTTC 59.907 34.615 0.00 0.00 0.00 2.29
15 16 5.942826 TGCTTTCAAAAATTGTCCCTGTTTT 59.057 32.000 0.00 0.00 0.00 2.43
16 17 5.353956 GTGCTTTCAAAAATTGTCCCTGTTT 59.646 36.000 0.00 0.00 0.00 2.83
17 18 4.875536 GTGCTTTCAAAAATTGTCCCTGTT 59.124 37.500 0.00 0.00 0.00 3.16
18 19 4.081198 TGTGCTTTCAAAAATTGTCCCTGT 60.081 37.500 0.00 0.00 0.00 4.00
19 20 4.440880 TGTGCTTTCAAAAATTGTCCCTG 58.559 39.130 0.00 0.00 0.00 4.45
20 21 4.162131 ACTGTGCTTTCAAAAATTGTCCCT 59.838 37.500 0.00 0.00 0.00 4.20
21 22 4.441792 ACTGTGCTTTCAAAAATTGTCCC 58.558 39.130 0.00 0.00 0.00 4.46
22 23 6.200854 CCTTACTGTGCTTTCAAAAATTGTCC 59.799 38.462 0.00 0.00 0.00 4.02
23 24 6.978080 TCCTTACTGTGCTTTCAAAAATTGTC 59.022 34.615 0.00 0.00 0.00 3.18
24 25 6.872920 TCCTTACTGTGCTTTCAAAAATTGT 58.127 32.000 0.00 0.00 0.00 2.71
25 26 7.254421 GGTTCCTTACTGTGCTTTCAAAAATTG 60.254 37.037 0.00 0.00 0.00 2.32
26 27 6.761242 GGTTCCTTACTGTGCTTTCAAAAATT 59.239 34.615 0.00 0.00 0.00 1.82
27 28 6.127196 TGGTTCCTTACTGTGCTTTCAAAAAT 60.127 34.615 0.00 0.00 0.00 1.82
28 29 5.186021 TGGTTCCTTACTGTGCTTTCAAAAA 59.814 36.000 0.00 0.00 0.00 1.94
29 30 4.707448 TGGTTCCTTACTGTGCTTTCAAAA 59.293 37.500 0.00 0.00 0.00 2.44
30 31 4.274147 TGGTTCCTTACTGTGCTTTCAAA 58.726 39.130 0.00 0.00 0.00 2.69
31 32 3.892284 TGGTTCCTTACTGTGCTTTCAA 58.108 40.909 0.00 0.00 0.00 2.69
32 33 3.569194 TGGTTCCTTACTGTGCTTTCA 57.431 42.857 0.00 0.00 0.00 2.69
33 34 3.440522 GGATGGTTCCTTACTGTGCTTTC 59.559 47.826 0.00 0.00 39.14 2.62
34 35 3.181434 TGGATGGTTCCTTACTGTGCTTT 60.181 43.478 0.00 0.00 43.07 3.51
35 36 2.375174 TGGATGGTTCCTTACTGTGCTT 59.625 45.455 0.00 0.00 43.07 3.91
36 37 1.985159 TGGATGGTTCCTTACTGTGCT 59.015 47.619 0.00 0.00 43.07 4.40
37 38 2.027192 TCTGGATGGTTCCTTACTGTGC 60.027 50.000 0.00 0.00 43.07 4.57
38 39 3.981071 TCTGGATGGTTCCTTACTGTG 57.019 47.619 0.00 0.00 43.07 3.66
39 40 4.494091 CATCTGGATGGTTCCTTACTGT 57.506 45.455 2.88 0.00 43.07 3.55
51 52 4.081406 TGGTTTTGAGAACCATCTGGATG 58.919 43.478 3.12 3.79 44.74 3.51
52 53 4.387026 TGGTTTTGAGAACCATCTGGAT 57.613 40.909 3.12 0.00 44.74 3.41
53 54 3.874383 TGGTTTTGAGAACCATCTGGA 57.126 42.857 3.12 0.00 44.74 3.86
72 73 0.871722 TTTCCGTGCGACCATTTCTG 59.128 50.000 0.00 0.00 0.00 3.02
73 74 1.600023 TTTTCCGTGCGACCATTTCT 58.400 45.000 0.00 0.00 0.00 2.52
74 75 2.409152 TTTTTCCGTGCGACCATTTC 57.591 45.000 0.00 0.00 0.00 2.17
92 93 0.969149 GGCCAGCCAGTTAGCTTTTT 59.031 50.000 3.12 0.00 42.61 1.94
93 94 0.900182 GGGCCAGCCAGTTAGCTTTT 60.900 55.000 11.50 0.00 42.61 2.27
94 95 1.304464 GGGCCAGCCAGTTAGCTTT 60.304 57.895 11.50 0.00 42.61 3.51
95 96 1.867595 ATGGGCCAGCCAGTTAGCTT 61.868 55.000 13.78 0.00 42.61 3.74
96 97 2.311854 ATGGGCCAGCCAGTTAGCT 61.312 57.895 13.78 0.00 46.45 3.32
97 98 2.123428 CATGGGCCAGCCAGTTAGC 61.123 63.158 13.78 0.00 37.98 3.09
98 99 0.546122 TACATGGGCCAGCCAGTTAG 59.454 55.000 13.78 0.00 37.98 2.34
99 100 0.254747 GTACATGGGCCAGCCAGTTA 59.745 55.000 13.78 0.00 37.98 2.24
100 101 1.000896 GTACATGGGCCAGCCAGTT 60.001 57.895 13.78 0.00 37.98 3.16
101 102 2.677228 GTACATGGGCCAGCCAGT 59.323 61.111 13.78 10.51 37.98 4.00
102 103 2.124151 GGTACATGGGCCAGCCAG 60.124 66.667 13.78 4.35 37.98 4.85
103 104 2.542851 TTGGTACATGGGCCAGCCA 61.543 57.895 13.78 14.58 39.30 4.75
104 105 2.052104 GTTGGTACATGGGCCAGCC 61.052 63.158 13.78 12.03 39.30 4.85
105 106 2.406616 CGTTGGTACATGGGCCAGC 61.407 63.158 13.78 12.40 39.30 4.85
106 107 0.322098 TTCGTTGGTACATGGGCCAG 60.322 55.000 13.78 6.92 39.30 4.85
107 108 0.322098 CTTCGTTGGTACATGGGCCA 60.322 55.000 9.61 9.61 39.30 5.36
108 109 1.029947 CCTTCGTTGGTACATGGGCC 61.030 60.000 0.00 0.00 39.30 5.80
109 110 0.322187 ACCTTCGTTGGTACATGGGC 60.322 55.000 0.00 0.00 39.30 5.36
110 111 1.271163 ACACCTTCGTTGGTACATGGG 60.271 52.381 0.00 0.00 39.30 4.00
111 112 1.804151 CACACCTTCGTTGGTACATGG 59.196 52.381 0.00 0.00 39.30 3.66
112 113 1.196808 GCACACCTTCGTTGGTACATG 59.803 52.381 0.00 0.00 39.30 3.21
113 114 1.519408 GCACACCTTCGTTGGTACAT 58.481 50.000 0.00 0.00 39.30 2.29
114 115 0.876777 CGCACACCTTCGTTGGTACA 60.877 55.000 0.00 0.00 38.45 2.90
115 116 0.598158 TCGCACACCTTCGTTGGTAC 60.598 55.000 2.15 0.00 38.45 3.34
116 117 0.319083 ATCGCACACCTTCGTTGGTA 59.681 50.000 2.15 0.00 38.45 3.25
117 118 0.319083 TATCGCACACCTTCGTTGGT 59.681 50.000 0.00 0.00 41.77 3.67
118 119 0.719465 GTATCGCACACCTTCGTTGG 59.281 55.000 0.00 0.00 0.00 3.77
119 120 0.719465 GGTATCGCACACCTTCGTTG 59.281 55.000 0.00 0.00 32.98 4.10
120 121 0.606604 AGGTATCGCACACCTTCGTT 59.393 50.000 0.00 0.00 44.18 3.85
121 122 0.172803 GAGGTATCGCACACCTTCGT 59.827 55.000 2.67 0.00 46.60 3.85
122 123 0.866061 CGAGGTATCGCACACCTTCG 60.866 60.000 2.67 4.73 46.60 3.79
123 124 0.454600 TCGAGGTATCGCACACCTTC 59.545 55.000 2.67 0.00 46.60 3.46
124 125 0.172803 GTCGAGGTATCGCACACCTT 59.827 55.000 2.67 0.00 46.60 3.50
141 142 2.510615 GCATACTGCGACAAGTTGTC 57.489 50.000 23.53 23.53 43.65 3.18
152 153 0.593128 CCCTATTTGCCGCATACTGC 59.407 55.000 0.00 0.00 40.69 4.40
153 154 1.967319 ACCCTATTTGCCGCATACTG 58.033 50.000 0.00 0.00 0.00 2.74
154 155 2.729028 AACCCTATTTGCCGCATACT 57.271 45.000 0.00 0.00 0.00 2.12
155 156 3.380320 AGAAAACCCTATTTGCCGCATAC 59.620 43.478 0.00 0.00 0.00 2.39
156 157 3.626930 AGAAAACCCTATTTGCCGCATA 58.373 40.909 0.00 0.00 0.00 3.14
157 158 2.456577 AGAAAACCCTATTTGCCGCAT 58.543 42.857 0.00 0.00 0.00 4.73
158 159 1.917872 AGAAAACCCTATTTGCCGCA 58.082 45.000 0.00 0.00 0.00 5.69
159 160 2.357952 CCTAGAAAACCCTATTTGCCGC 59.642 50.000 0.00 0.00 0.00 6.53
160 161 2.949644 CCCTAGAAAACCCTATTTGCCG 59.050 50.000 0.00 0.00 0.00 5.69
161 162 4.207955 CTCCCTAGAAAACCCTATTTGCC 58.792 47.826 0.00 0.00 0.00 4.52
162 163 4.079958 TCCTCCCTAGAAAACCCTATTTGC 60.080 45.833 0.00 0.00 0.00 3.68
163 164 5.191921 ACTCCTCCCTAGAAAACCCTATTTG 59.808 44.000 0.00 0.00 0.00 2.32
164 165 5.360041 ACTCCTCCCTAGAAAACCCTATTT 58.640 41.667 0.00 0.00 0.00 1.40
165 166 4.974194 ACTCCTCCCTAGAAAACCCTATT 58.026 43.478 0.00 0.00 0.00 1.73
166 167 4.645968 ACTCCTCCCTAGAAAACCCTAT 57.354 45.455 0.00 0.00 0.00 2.57
167 168 4.431158 AACTCCTCCCTAGAAAACCCTA 57.569 45.455 0.00 0.00 0.00 3.53
168 169 3.293215 AACTCCTCCCTAGAAAACCCT 57.707 47.619 0.00 0.00 0.00 4.34
169 170 3.587951 AGAAACTCCTCCCTAGAAAACCC 59.412 47.826 0.00 0.00 0.00 4.11
170 171 4.912317 AGAAACTCCTCCCTAGAAAACC 57.088 45.455 0.00 0.00 0.00 3.27
171 172 5.473846 CCAAAGAAACTCCTCCCTAGAAAAC 59.526 44.000 0.00 0.00 0.00 2.43
172 173 5.371472 TCCAAAGAAACTCCTCCCTAGAAAA 59.629 40.000 0.00 0.00 0.00 2.29
173 174 4.911522 TCCAAAGAAACTCCTCCCTAGAAA 59.088 41.667 0.00 0.00 0.00 2.52
174 175 4.499472 TCCAAAGAAACTCCTCCCTAGAA 58.501 43.478 0.00 0.00 0.00 2.10
175 176 4.097418 CTCCAAAGAAACTCCTCCCTAGA 58.903 47.826 0.00 0.00 0.00 2.43
176 177 3.198853 CCTCCAAAGAAACTCCTCCCTAG 59.801 52.174 0.00 0.00 0.00 3.02
177 178 3.182152 CCTCCAAAGAAACTCCTCCCTA 58.818 50.000 0.00 0.00 0.00 3.53
178 179 1.988846 CCTCCAAAGAAACTCCTCCCT 59.011 52.381 0.00 0.00 0.00 4.20
179 180 1.004862 CCCTCCAAAGAAACTCCTCCC 59.995 57.143 0.00 0.00 0.00 4.30
180 181 1.985895 TCCCTCCAAAGAAACTCCTCC 59.014 52.381 0.00 0.00 0.00 4.30
181 182 4.308526 AATCCCTCCAAAGAAACTCCTC 57.691 45.455 0.00 0.00 0.00 3.71
182 183 4.106341 TGAAATCCCTCCAAAGAAACTCCT 59.894 41.667 0.00 0.00 0.00 3.69
183 184 4.218635 GTGAAATCCCTCCAAAGAAACTCC 59.781 45.833 0.00 0.00 0.00 3.85
184 185 4.218635 GGTGAAATCCCTCCAAAGAAACTC 59.781 45.833 0.00 0.00 0.00 3.01
185 186 4.152647 GGTGAAATCCCTCCAAAGAAACT 58.847 43.478 0.00 0.00 0.00 2.66
186 187 3.258372 GGGTGAAATCCCTCCAAAGAAAC 59.742 47.826 0.00 0.00 43.85 2.78
187 188 3.506398 GGGTGAAATCCCTCCAAAGAAA 58.494 45.455 0.00 0.00 43.85 2.52
188 189 3.169512 GGGTGAAATCCCTCCAAAGAA 57.830 47.619 0.00 0.00 43.85 2.52
189 190 2.899303 GGGTGAAATCCCTCCAAAGA 57.101 50.000 0.00 0.00 43.85 2.52
198 199 4.292977 GAATGTTCGATGGGTGAAATCC 57.707 45.455 0.00 0.00 0.00 3.01
212 213 0.847035 GTCCGATCGAGCGAATGTTC 59.153 55.000 26.68 4.16 0.00 3.18
213 214 0.527817 GGTCCGATCGAGCGAATGTT 60.528 55.000 26.68 0.00 0.00 2.71
214 215 1.065928 GGTCCGATCGAGCGAATGT 59.934 57.895 26.68 0.00 0.00 2.71
215 216 3.923614 GGTCCGATCGAGCGAATG 58.076 61.111 26.68 8.19 0.00 2.67
220 221 2.278661 GGAACGGTCCGATCGAGC 60.279 66.667 20.51 11.32 33.05 5.03
221 222 2.337749 CTGGGAACGGTCCGATCGAG 62.338 65.000 20.51 11.18 46.04 4.04
222 223 2.361483 TGGGAACGGTCCGATCGA 60.361 61.111 20.51 2.88 46.04 3.59
223 224 2.104331 CTGGGAACGGTCCGATCG 59.896 66.667 20.51 8.51 46.04 3.69
231 232 1.665679 CGATTCATTCACTGGGAACGG 59.334 52.381 0.00 0.00 38.60 4.44
232 233 2.346803 ACGATTCATTCACTGGGAACG 58.653 47.619 0.00 0.00 38.60 3.95
233 234 3.181520 CGAACGATTCATTCACTGGGAAC 60.182 47.826 0.00 0.00 38.60 3.62
234 235 3.000041 CGAACGATTCATTCACTGGGAA 59.000 45.455 0.00 0.00 40.46 3.97
235 236 2.028476 ACGAACGATTCATTCACTGGGA 60.028 45.455 0.14 0.00 0.00 4.37
236 237 2.346803 ACGAACGATTCATTCACTGGG 58.653 47.619 0.14 0.00 0.00 4.45
237 238 5.492854 CAATACGAACGATTCATTCACTGG 58.507 41.667 0.14 0.00 0.00 4.00
238 239 4.957967 GCAATACGAACGATTCATTCACTG 59.042 41.667 0.14 0.00 0.00 3.66
239 240 4.870426 AGCAATACGAACGATTCATTCACT 59.130 37.500 0.14 0.00 0.00 3.41
240 241 5.143916 AGCAATACGAACGATTCATTCAC 57.856 39.130 0.14 0.00 0.00 3.18
241 242 7.477144 AATAGCAATACGAACGATTCATTCA 57.523 32.000 0.14 0.00 0.00 2.57
242 243 8.767944 AAAATAGCAATACGAACGATTCATTC 57.232 30.769 0.14 0.00 0.00 2.67
265 266 5.317733 ACCGACATGACAAAACTGAAAAA 57.682 34.783 0.00 0.00 0.00 1.94
266 267 4.201970 GGACCGACATGACAAAACTGAAAA 60.202 41.667 0.00 0.00 0.00 2.29
267 268 3.314080 GGACCGACATGACAAAACTGAAA 59.686 43.478 0.00 0.00 0.00 2.69
268 269 2.875933 GGACCGACATGACAAAACTGAA 59.124 45.455 0.00 0.00 0.00 3.02
269 270 2.104111 AGGACCGACATGACAAAACTGA 59.896 45.455 0.00 0.00 0.00 3.41
270 271 2.494059 AGGACCGACATGACAAAACTG 58.506 47.619 0.00 0.00 0.00 3.16
271 272 2.930826 AGGACCGACATGACAAAACT 57.069 45.000 0.00 0.00 0.00 2.66
272 273 4.454504 ACATAAGGACCGACATGACAAAAC 59.545 41.667 0.00 0.00 0.00 2.43
273 274 4.454161 CACATAAGGACCGACATGACAAAA 59.546 41.667 0.00 0.00 0.00 2.44
274 275 4.000325 CACATAAGGACCGACATGACAAA 59.000 43.478 0.00 0.00 0.00 2.83
275 276 3.259625 TCACATAAGGACCGACATGACAA 59.740 43.478 0.00 0.00 0.00 3.18
276 277 2.829120 TCACATAAGGACCGACATGACA 59.171 45.455 0.00 0.00 0.00 3.58
277 278 3.520290 TCACATAAGGACCGACATGAC 57.480 47.619 0.00 0.00 0.00 3.06
278 279 4.753516 AATCACATAAGGACCGACATGA 57.246 40.909 0.00 1.59 0.00 3.07
279 280 4.635765 ACAAATCACATAAGGACCGACATG 59.364 41.667 0.00 0.00 0.00 3.21
280 281 4.843728 ACAAATCACATAAGGACCGACAT 58.156 39.130 0.00 0.00 0.00 3.06
281 282 4.280436 ACAAATCACATAAGGACCGACA 57.720 40.909 0.00 0.00 0.00 4.35
282 283 5.416947 AGTACAAATCACATAAGGACCGAC 58.583 41.667 0.00 0.00 0.00 4.79
283 284 5.670792 AGTACAAATCACATAAGGACCGA 57.329 39.130 0.00 0.00 0.00 4.69
284 285 6.737254 AAAGTACAAATCACATAAGGACCG 57.263 37.500 0.00 0.00 0.00 4.79
308 309 9.770097 ACGTGTCTCATTCATATCATAAAGATT 57.230 29.630 0.00 0.00 38.19 2.40
320 321 9.546428 TTTCATGATAATACGTGTCTCATTCAT 57.454 29.630 0.00 0.00 0.00 2.57
321 322 8.940768 TTTCATGATAATACGTGTCTCATTCA 57.059 30.769 0.00 0.00 0.00 2.57
324 325 9.599866 TCTTTTTCATGATAATACGTGTCTCAT 57.400 29.630 0.00 1.25 0.00 2.90
325 326 8.996024 TCTTTTTCATGATAATACGTGTCTCA 57.004 30.769 0.00 0.00 0.00 3.27
328 329 9.000018 GCTTTCTTTTTCATGATAATACGTGTC 58.000 33.333 0.00 0.00 0.00 3.67
329 330 8.511321 TGCTTTCTTTTTCATGATAATACGTGT 58.489 29.630 0.00 0.00 0.00 4.49
330 331 8.788813 GTGCTTTCTTTTTCATGATAATACGTG 58.211 33.333 0.00 0.00 0.00 4.49
331 332 7.968405 GGTGCTTTCTTTTTCATGATAATACGT 59.032 33.333 0.00 0.00 0.00 3.57
332 333 8.184192 AGGTGCTTTCTTTTTCATGATAATACG 58.816 33.333 0.00 0.00 0.00 3.06
333 334 9.508567 GAGGTGCTTTCTTTTTCATGATAATAC 57.491 33.333 0.00 0.00 0.00 1.89
334 335 8.686334 GGAGGTGCTTTCTTTTTCATGATAATA 58.314 33.333 0.00 0.00 0.00 0.98
335 336 7.364144 GGGAGGTGCTTTCTTTTTCATGATAAT 60.364 37.037 0.00 0.00 0.00 1.28
336 337 6.071391 GGGAGGTGCTTTCTTTTTCATGATAA 60.071 38.462 0.00 0.00 0.00 1.75
337 338 5.418840 GGGAGGTGCTTTCTTTTTCATGATA 59.581 40.000 0.00 0.00 0.00 2.15
338 339 4.221482 GGGAGGTGCTTTCTTTTTCATGAT 59.779 41.667 0.00 0.00 0.00 2.45
339 340 3.573967 GGGAGGTGCTTTCTTTTTCATGA 59.426 43.478 0.00 0.00 0.00 3.07
340 341 3.612479 CGGGAGGTGCTTTCTTTTTCATG 60.612 47.826 0.00 0.00 0.00 3.07
341 342 2.558359 CGGGAGGTGCTTTCTTTTTCAT 59.442 45.455 0.00 0.00 0.00 2.57
342 343 1.953686 CGGGAGGTGCTTTCTTTTTCA 59.046 47.619 0.00 0.00 0.00 2.69
343 344 2.226674 CTCGGGAGGTGCTTTCTTTTTC 59.773 50.000 0.00 0.00 0.00 2.29
344 345 2.230660 CTCGGGAGGTGCTTTCTTTTT 58.769 47.619 0.00 0.00 0.00 1.94
345 346 1.545651 CCTCGGGAGGTGCTTTCTTTT 60.546 52.381 6.56 0.00 43.61 2.27
346 347 0.036875 CCTCGGGAGGTGCTTTCTTT 59.963 55.000 6.56 0.00 43.61 2.52
347 348 1.679898 CCTCGGGAGGTGCTTTCTT 59.320 57.895 6.56 0.00 43.61 2.52
348 349 3.393360 CCTCGGGAGGTGCTTTCT 58.607 61.111 6.56 0.00 43.61 2.52
357 358 1.453155 CAACAATTCCACCTCGGGAG 58.547 55.000 0.00 0.00 38.42 4.30
358 359 0.608035 GCAACAATTCCACCTCGGGA 60.608 55.000 0.00 0.00 34.36 5.14
359 360 1.595093 GGCAACAATTCCACCTCGGG 61.595 60.000 0.00 0.00 34.36 5.14
360 361 1.883021 GGCAACAATTCCACCTCGG 59.117 57.895 0.00 0.00 0.00 4.63
378 379 4.876107 ACAAATCTAGGACGCCAATAGTTG 59.124 41.667 0.00 0.00 0.00 3.16
379 380 5.099042 ACAAATCTAGGACGCCAATAGTT 57.901 39.130 0.00 0.00 0.00 2.24
380 381 4.161565 TGACAAATCTAGGACGCCAATAGT 59.838 41.667 0.00 0.00 0.00 2.12
381 382 4.693283 TGACAAATCTAGGACGCCAATAG 58.307 43.478 0.00 0.00 0.00 1.73
382 383 4.746535 TGACAAATCTAGGACGCCAATA 57.253 40.909 0.00 0.00 0.00 1.90
383 384 3.627395 TGACAAATCTAGGACGCCAAT 57.373 42.857 0.00 0.00 0.00 3.16
384 385 3.244422 ACTTGACAAATCTAGGACGCCAA 60.244 43.478 0.00 0.00 32.55 4.52
385 386 2.301870 ACTTGACAAATCTAGGACGCCA 59.698 45.455 0.00 0.00 32.55 5.69
386 387 2.973945 ACTTGACAAATCTAGGACGCC 58.026 47.619 0.00 0.00 32.55 5.68
387 388 4.451096 TGAAACTTGACAAATCTAGGACGC 59.549 41.667 0.00 0.00 32.55 5.19
388 389 6.591834 AGATGAAACTTGACAAATCTAGGACG 59.408 38.462 0.00 0.00 32.55 4.79
389 390 7.913674 AGATGAAACTTGACAAATCTAGGAC 57.086 36.000 0.00 0.00 32.55 3.85
393 394 9.958180 TCCATAAGATGAAACTTGACAAATCTA 57.042 29.630 0.82 0.00 0.00 1.98
394 395 8.868522 TCCATAAGATGAAACTTGACAAATCT 57.131 30.769 0.00 0.00 0.00 2.40
397 398 9.912634 GAAATCCATAAGATGAAACTTGACAAA 57.087 29.630 0.00 0.00 34.56 2.83
398 399 8.522830 GGAAATCCATAAGATGAAACTTGACAA 58.477 33.333 0.00 0.00 34.56 3.18
399 400 7.122650 GGGAAATCCATAAGATGAAACTTGACA 59.877 37.037 1.22 0.00 34.56 3.58
400 401 7.416777 GGGGAAATCCATAAGATGAAACTTGAC 60.417 40.741 1.22 0.00 34.56 3.18
436 437 6.597672 TGACATTCCATAGCACGAAACTATTT 59.402 34.615 0.00 0.00 0.00 1.40
527 533 5.728471 ACTGTCTCGATTTGACATCAGAAT 58.272 37.500 6.46 0.00 42.57 2.40
528 534 5.139435 ACTGTCTCGATTTGACATCAGAA 57.861 39.130 6.46 0.00 42.57 3.02
575 581 1.300481 GGAGCTGGAACGAAATAGGC 58.700 55.000 0.00 0.00 0.00 3.93
662 676 3.840666 ACCTGCTCCTGTCATCTTCTAAA 59.159 43.478 0.00 0.00 0.00 1.85
663 677 3.445008 ACCTGCTCCTGTCATCTTCTAA 58.555 45.455 0.00 0.00 0.00 2.10
702 723 0.952497 ACGTGCAGAGCATTCACTGG 60.952 55.000 0.00 0.00 41.91 4.00
712 733 0.987715 CGTTGAGATGACGTGCAGAG 59.012 55.000 0.00 0.00 35.88 3.35
727 748 1.742761 AGCATCCTGGAACATCGTTG 58.257 50.000 0.00 0.00 38.20 4.10
769 826 1.006805 CACGAGCAGGGATCGGATC 60.007 63.158 9.54 9.54 46.07 3.36
770 827 3.133014 CACGAGCAGGGATCGGAT 58.867 61.111 8.78 0.00 46.07 4.18
771 828 3.838271 GCACGAGCAGGGATCGGA 61.838 66.667 8.78 0.00 46.07 4.55
854 1148 1.550327 TGAGAGTTGAGACGGAGCAT 58.450 50.000 0.00 0.00 0.00 3.79
902 1197 2.032030 CGAACTGTGCACTTTTGTAGGG 60.032 50.000 19.41 0.00 0.00 3.53
904 1199 2.639751 GCGAACTGTGCACTTTTGTAG 58.360 47.619 19.41 8.26 0.00 2.74
965 1260 5.462398 GCTGGTGAGATGGTACTATAAAACG 59.538 44.000 0.00 0.00 0.00 3.60
974 1269 1.521681 GGCGCTGGTGAGATGGTAC 60.522 63.158 7.64 0.00 0.00 3.34
1123 1418 2.656651 CGCGAATGAGCCGGAGAG 60.657 66.667 5.05 0.00 0.00 3.20
1296 1591 3.428725 GCGTGACATCATAAATTTGCCCA 60.429 43.478 0.00 0.00 0.00 5.36
1347 1644 9.866655 AATAGTCCTGAAATTCAATGGCTATAA 57.133 29.630 15.25 0.00 0.00 0.98
1374 1671 2.062519 GGAAGACGAACAGAGAAGTGC 58.937 52.381 0.00 0.00 0.00 4.40
1377 1674 4.785511 TTAGGGAAGACGAACAGAGAAG 57.214 45.455 0.00 0.00 0.00 2.85
1380 1677 7.817962 TCTTATTTTTAGGGAAGACGAACAGAG 59.182 37.037 0.00 0.00 0.00 3.35
1398 1695 6.267471 TCAGGAAATGCAGGTGTTCTTATTTT 59.733 34.615 0.00 0.00 0.00 1.82
1451 1748 9.113838 ACGCATATCAAGATTATGAGTTTTTCT 57.886 29.630 0.00 0.00 31.88 2.52
1452 1749 9.374960 GACGCATATCAAGATTATGAGTTTTTC 57.625 33.333 2.43 0.00 35.09 2.29
1453 1750 8.892723 TGACGCATATCAAGATTATGAGTTTTT 58.107 29.630 2.43 0.00 35.09 1.94
1454 1751 8.437360 TGACGCATATCAAGATTATGAGTTTT 57.563 30.769 2.43 0.00 35.09 2.43
1456 1753 7.436933 TCTGACGCATATCAAGATTATGAGTT 58.563 34.615 2.43 0.00 35.09 3.01
1457 1754 6.986250 TCTGACGCATATCAAGATTATGAGT 58.014 36.000 0.66 0.66 37.04 3.41
1458 1755 7.311408 TCTCTGACGCATATCAAGATTATGAG 58.689 38.462 0.00 0.00 31.76 2.90
1459 1756 7.219484 TCTCTGACGCATATCAAGATTATGA 57.781 36.000 0.00 0.00 0.00 2.15
1460 1757 7.880059 TTCTCTGACGCATATCAAGATTATG 57.120 36.000 0.00 0.00 0.00 1.90
1512 1810 5.483811 TCTCGTGGCAATTTACAGATAACA 58.516 37.500 0.00 0.00 0.00 2.41
1514 1812 6.170506 ACTTCTCGTGGCAATTTACAGATAA 58.829 36.000 0.00 0.00 0.00 1.75
1528 1861 4.638304 TCTCCCTTTTTAACTTCTCGTGG 58.362 43.478 0.00 0.00 0.00 4.94
1531 1864 7.649057 ACAAATTCTCCCTTTTTAACTTCTCG 58.351 34.615 0.00 0.00 0.00 4.04
1559 1892 5.221322 ACAAAATTCTCCTTTCAGTTCCAGC 60.221 40.000 0.00 0.00 0.00 4.85
1604 1946 6.322201 GGGAATGTGGCATCCTTATATAATGG 59.678 42.308 5.64 0.75 35.95 3.16
1642 3034 7.736447 ACAGAAACAAGGAGAACTCTTTATG 57.264 36.000 1.86 5.04 30.27 1.90
1663 3055 4.702247 TGATGTGAAACGACGTAAACAG 57.298 40.909 0.00 0.00 42.39 3.16
1700 3092 5.065346 GCCTCAAACTCTATGGAAGTTAAGC 59.935 44.000 0.00 0.00 0.00 3.09
1703 3095 4.464951 TCGCCTCAAACTCTATGGAAGTTA 59.535 41.667 0.00 0.00 0.00 2.24
1751 3146 8.310382 CAAGTAAGGATATCATCTCCTAACAGG 58.690 40.741 4.83 0.00 42.42 4.00
1797 3192 9.420118 GAGATATCACTATGGAGTATGGAATCT 57.580 37.037 5.32 0.00 33.32 2.40
1798 3193 9.420118 AGAGATATCACTATGGAGTATGGAATC 57.580 37.037 5.32 0.00 33.32 2.52
1799 3194 9.781425 AAGAGATATCACTATGGAGTATGGAAT 57.219 33.333 5.32 0.00 33.32 3.01
1805 3200 8.972127 GCCAATAAGAGATATCACTATGGAGTA 58.028 37.037 22.44 6.60 33.32 2.59
1806 3201 7.093112 GGCCAATAAGAGATATCACTATGGAGT 60.093 40.741 22.44 4.99 35.80 3.85
1807 3202 7.271511 GGCCAATAAGAGATATCACTATGGAG 58.728 42.308 22.44 8.45 0.00 3.86
1808 3203 6.156949 GGGCCAATAAGAGATATCACTATGGA 59.843 42.308 22.44 5.57 0.00 3.41
1809 3204 6.157645 AGGGCCAATAAGAGATATCACTATGG 59.842 42.308 6.18 17.66 0.00 2.74
1810 3205 7.046652 CAGGGCCAATAAGAGATATCACTATG 58.953 42.308 6.18 4.84 0.00 2.23
1811 3206 6.352565 GCAGGGCCAATAAGAGATATCACTAT 60.353 42.308 6.18 0.00 0.00 2.12
1812 3207 5.046304 GCAGGGCCAATAAGAGATATCACTA 60.046 44.000 6.18 0.00 0.00 2.74
1813 3208 4.263243 GCAGGGCCAATAAGAGATATCACT 60.263 45.833 6.18 0.42 0.00 3.41
1814 3209 4.006319 GCAGGGCCAATAAGAGATATCAC 58.994 47.826 6.18 0.00 0.00 3.06
1815 3210 3.652387 TGCAGGGCCAATAAGAGATATCA 59.348 43.478 6.18 0.00 0.00 2.15
1816 3211 4.006319 GTGCAGGGCCAATAAGAGATATC 58.994 47.826 6.18 0.00 0.00 1.63
1817 3212 3.395607 TGTGCAGGGCCAATAAGAGATAT 59.604 43.478 6.18 0.00 0.00 1.63
1818 3213 2.777114 TGTGCAGGGCCAATAAGAGATA 59.223 45.455 6.18 0.00 0.00 1.98
1819 3214 1.565759 TGTGCAGGGCCAATAAGAGAT 59.434 47.619 6.18 0.00 0.00 2.75
1820 3215 0.991146 TGTGCAGGGCCAATAAGAGA 59.009 50.000 6.18 0.00 0.00 3.10
1821 3216 1.838112 TTGTGCAGGGCCAATAAGAG 58.162 50.000 6.18 0.00 0.00 2.85
1822 3217 2.530460 ATTGTGCAGGGCCAATAAGA 57.470 45.000 6.18 0.00 31.43 2.10
1823 3218 4.942761 AATATTGTGCAGGGCCAATAAG 57.057 40.909 6.18 0.00 36.29 1.73
1824 3219 4.100808 GGAAATATTGTGCAGGGCCAATAA 59.899 41.667 6.18 0.00 36.29 1.40
1825 3220 3.640967 GGAAATATTGTGCAGGGCCAATA 59.359 43.478 6.18 9.22 36.72 1.90
1826 3221 2.435437 GGAAATATTGTGCAGGGCCAAT 59.565 45.455 6.18 5.69 35.14 3.16
1827 3222 1.830477 GGAAATATTGTGCAGGGCCAA 59.170 47.619 6.18 0.00 0.00 4.52
1828 3223 1.006998 AGGAAATATTGTGCAGGGCCA 59.993 47.619 6.18 0.00 0.00 5.36
1829 3224 1.780503 AGGAAATATTGTGCAGGGCC 58.219 50.000 0.00 0.00 0.00 5.80
1830 3225 3.287222 TGTAGGAAATATTGTGCAGGGC 58.713 45.455 0.00 0.00 0.00 5.19
1831 3226 3.885297 CCTGTAGGAAATATTGTGCAGGG 59.115 47.826 16.17 1.54 38.73 4.45
1832 3227 3.885297 CCCTGTAGGAAATATTGTGCAGG 59.115 47.826 16.67 16.67 41.19 4.85
1833 3228 4.780815 TCCCTGTAGGAAATATTGTGCAG 58.219 43.478 0.00 0.00 43.78 4.41
1834 3229 4.780815 CTCCCTGTAGGAAATATTGTGCA 58.219 43.478 0.00 0.00 46.94 4.57
1835 3230 3.565902 GCTCCCTGTAGGAAATATTGTGC 59.434 47.826 0.00 0.00 46.94 4.57
1836 3231 4.137543 GGCTCCCTGTAGGAAATATTGTG 58.862 47.826 0.00 0.00 46.94 3.33
1837 3232 3.138468 GGGCTCCCTGTAGGAAATATTGT 59.862 47.826 0.00 0.00 46.94 2.71
1838 3233 3.756117 GGGCTCCCTGTAGGAAATATTG 58.244 50.000 0.00 0.00 46.94 1.90
1839 3234 2.372172 CGGGCTCCCTGTAGGAAATATT 59.628 50.000 3.11 0.00 46.94 1.28
1840 3235 1.978580 CGGGCTCCCTGTAGGAAATAT 59.021 52.381 3.11 0.00 46.94 1.28
1841 3236 1.420430 CGGGCTCCCTGTAGGAAATA 58.580 55.000 3.11 0.00 46.94 1.40
1842 3237 1.345715 CCGGGCTCCCTGTAGGAAAT 61.346 60.000 3.11 0.00 46.94 2.17
1843 3238 1.993391 CCGGGCTCCCTGTAGGAAA 60.993 63.158 3.11 0.00 46.94 3.13
1844 3239 2.365105 CCGGGCTCCCTGTAGGAA 60.365 66.667 3.11 0.00 46.94 3.36
1847 3242 3.854669 CTGCCGGGCTCCCTGTAG 61.855 72.222 21.46 2.99 0.00 2.74
1862 3257 2.859273 AATCGGGTTCGGCTCAGCTG 62.859 60.000 7.63 7.63 36.95 4.24
1863 3258 2.579684 GAATCGGGTTCGGCTCAGCT 62.580 60.000 0.00 0.00 36.95 4.24
1864 3259 2.125106 AATCGGGTTCGGCTCAGC 60.125 61.111 0.00 0.00 36.95 4.26
1865 3260 1.521681 GGAATCGGGTTCGGCTCAG 60.522 63.158 0.00 0.00 37.73 3.35
1866 3261 1.622607 ATGGAATCGGGTTCGGCTCA 61.623 55.000 0.00 0.00 37.73 4.26
1867 3262 0.391597 TATGGAATCGGGTTCGGCTC 59.608 55.000 0.00 0.00 37.73 4.70
1868 3263 0.106149 GTATGGAATCGGGTTCGGCT 59.894 55.000 0.00 0.00 37.73 5.52
1869 3264 0.179067 TGTATGGAATCGGGTTCGGC 60.179 55.000 0.00 0.00 37.73 5.54
1870 3265 2.319136 TTGTATGGAATCGGGTTCGG 57.681 50.000 0.00 0.00 37.73 4.30
1871 3266 3.267483 AGTTTGTATGGAATCGGGTTCG 58.733 45.455 0.00 0.00 37.73 3.95
1872 3267 4.258543 TGAGTTTGTATGGAATCGGGTTC 58.741 43.478 0.00 0.00 36.04 3.62
1873 3268 4.295141 TGAGTTTGTATGGAATCGGGTT 57.705 40.909 0.00 0.00 0.00 4.11
1874 3269 3.992943 TGAGTTTGTATGGAATCGGGT 57.007 42.857 0.00 0.00 0.00 5.28
1875 3270 6.935741 TTAATGAGTTTGTATGGAATCGGG 57.064 37.500 0.00 0.00 0.00 5.14
1876 3271 8.840321 AGATTTAATGAGTTTGTATGGAATCGG 58.160 33.333 0.00 0.00 0.00 4.18
1915 3310 9.709495 AACTATCTGAGATCAAGCAATCTTATC 57.291 33.333 0.00 0.00 36.13 1.75
1921 3316 6.183360 GCACAAACTATCTGAGATCAAGCAAT 60.183 38.462 0.00 0.00 0.00 3.56
1928 3323 5.016051 TCTGGCACAAACTATCTGAGATC 57.984 43.478 0.00 0.00 38.70 2.75
1957 3353 6.088824 ACAAATTCATTGACTCGCAAGAATC 58.911 36.000 0.00 0.00 44.14 2.52
1966 3362 5.063180 TGCCATGACAAATTCATTGACTC 57.937 39.130 0.00 0.00 42.87 3.36
2040 3437 4.454847 GCCCACTTAGTTAGACAAGGAAAC 59.545 45.833 0.00 0.00 0.00 2.78
2120 3517 4.624882 GCAGATCCTGAGAATAATGCTACG 59.375 45.833 0.00 0.00 32.44 3.51
2123 3520 4.387598 GTGCAGATCCTGAGAATAATGCT 58.612 43.478 0.00 0.00 32.44 3.79
2136 3533 3.474806 CACGTTCGGTGCAGATCC 58.525 61.111 0.00 0.00 40.33 3.36
2151 3548 6.743627 TGTGTGATTTTCGTTAAAACAGACAC 59.256 34.615 15.60 12.94 39.23 3.67
2152 3549 6.843208 TGTGTGATTTTCGTTAAAACAGACA 58.157 32.000 15.60 15.60 37.44 3.41
2153 3550 7.908193 ATGTGTGATTTTCGTTAAAACAGAC 57.092 32.000 12.42 12.42 37.41 3.51
2154 3551 8.918961 AAATGTGTGATTTTCGTTAAAACAGA 57.081 26.923 0.00 0.00 37.41 3.41
2155 3552 8.802856 TGAAATGTGTGATTTTCGTTAAAACAG 58.197 29.630 0.00 0.00 37.41 3.16
2468 3873 1.595382 GCTGCGTCTTGGTGAGTGT 60.595 57.895 0.00 0.00 0.00 3.55
2565 3970 2.130426 AACGCATGCCAAACCACCA 61.130 52.632 13.15 0.00 0.00 4.17
2812 4218 3.409570 TCGCTAGTACTGTGTGTCTCTT 58.590 45.455 5.39 0.00 0.00 2.85
2821 4227 3.542648 TCAGCAGTATCGCTAGTACTGT 58.457 45.455 16.25 5.24 46.75 3.55
2913 4319 3.042059 ACCGACATCCTTATGGTACCT 57.958 47.619 14.36 1.08 37.43 3.08
2948 4354 5.153950 AGTAAAGCTCTTGATTTCCGACT 57.846 39.130 0.00 0.00 33.52 4.18
2951 4357 6.475727 TCGATTAGTAAAGCTCTTGATTTCCG 59.524 38.462 0.00 0.00 33.52 4.30
2968 4374 8.594881 GATTGTAATCCAGTGAATCGATTAGT 57.405 34.615 11.38 0.00 31.01 2.24
2984 4390 7.519008 CGGCTTGTCTAATGAAGGATTGTAATC 60.519 40.741 0.00 0.00 34.66 1.75
3004 4410 1.949525 CCCATCATTCCTTACGGCTTG 59.050 52.381 0.00 0.00 0.00 4.01
3018 4424 7.235606 TGTTTGTGGATAAATTAAACCCCATCA 59.764 33.333 0.00 0.00 31.96 3.07
3029 4435 7.781324 AGGAGATGTTGTTTGTGGATAAATT 57.219 32.000 0.00 0.00 0.00 1.82
3030 4436 8.877864 TTAGGAGATGTTGTTTGTGGATAAAT 57.122 30.769 0.00 0.00 0.00 1.40
3031 4437 8.698973 TTTAGGAGATGTTGTTTGTGGATAAA 57.301 30.769 0.00 0.00 0.00 1.40
3055 4461 1.461897 CGCGAAACCGTGTAATTCCTT 59.538 47.619 0.00 0.00 33.32 3.36
3067 4473 0.794605 GCTCATCTTTGCGCGAAACC 60.795 55.000 12.10 0.00 0.00 3.27
3072 4478 1.002366 AACTAGCTCATCTTTGCGCG 58.998 50.000 0.00 0.00 38.61 6.86
3098 4504 4.670347 CCTAGTGTTTACGGCTAGAGAAC 58.330 47.826 0.00 0.00 35.48 3.01
3105 4511 0.604578 TTCGCCTAGTGTTTACGGCT 59.395 50.000 0.00 0.00 40.34 5.52
3108 4514 3.930848 AGGAATTTCGCCTAGTGTTTACG 59.069 43.478 0.00 0.00 32.92 3.18
3113 4519 3.695830 TTGAGGAATTTCGCCTAGTGT 57.304 42.857 0.00 0.00 35.44 3.55
3138 4544 1.399791 GAGATTCAAGAGCTTTGCGGG 59.600 52.381 0.00 0.00 0.00 6.13
3172 4578 3.274095 ACTTAATTGCCTGGAGAGAGC 57.726 47.619 0.00 0.00 0.00 4.09
3175 4581 5.344743 TCTGTACTTAATTGCCTGGAGAG 57.655 43.478 0.00 0.00 0.00 3.20
3182 4588 9.384764 AGTAGAATTCTTCTGTACTTAATTGCC 57.615 33.333 14.36 0.00 40.94 4.52
3230 4636 2.105821 AGGAAAGTGATCGTGGAAACCA 59.894 45.455 0.00 0.00 0.00 3.67
3236 4642 2.076863 GGTTGAGGAAAGTGATCGTGG 58.923 52.381 0.00 0.00 0.00 4.94
3237 4643 2.076863 GGGTTGAGGAAAGTGATCGTG 58.923 52.381 0.00 0.00 0.00 4.35
3239 4645 2.472695 TGGGTTGAGGAAAGTGATCG 57.527 50.000 0.00 0.00 0.00 3.69
3259 4665 7.256332 GGAAGGAGTACAATTAGCCTATGATCA 60.256 40.741 0.00 0.00 0.00 2.92
3285 4691 1.568504 TGGAGGCAGTAGTGGTAAGG 58.431 55.000 0.00 0.00 0.00 2.69
3296 4702 1.721664 CGCATTGGTCATGGAGGCAG 61.722 60.000 0.00 0.00 32.81 4.85
3299 4705 0.179048 TAGCGCATTGGTCATGGAGG 60.179 55.000 11.47 0.00 32.81 4.30
3309 4715 3.451526 TGAAGTGAGATCTAGCGCATTG 58.548 45.455 11.47 0.00 0.00 2.82
3313 4719 3.056304 GGAATGAAGTGAGATCTAGCGC 58.944 50.000 0.00 0.00 0.00 5.92
3332 4738 2.843545 GTGCCCAGACCCTTTGGA 59.156 61.111 0.00 0.00 37.96 3.53
3340 4746 1.142748 CTCTCATCCGTGCCCAGAC 59.857 63.158 0.00 0.00 0.00 3.51
3341 4747 1.305297 ACTCTCATCCGTGCCCAGA 60.305 57.895 0.00 0.00 0.00 3.86
3345 4751 0.247736 AAGACACTCTCATCCGTGCC 59.752 55.000 0.00 0.00 34.58 5.01
3347 4753 1.200252 ACGAAGACACTCTCATCCGTG 59.800 52.381 0.00 0.00 37.18 4.94
3366 4772 1.601166 GTCTGGGTGTTGGTAACCAC 58.399 55.000 0.00 0.00 39.65 4.16
3369 4775 0.604511 CCGGTCTGGGTGTTGGTAAC 60.605 60.000 0.00 0.00 0.00 2.50
3372 4778 1.459921 TACCGGTCTGGGTGTTGGT 60.460 57.895 12.40 0.00 44.64 3.67
3448 4854 0.100325 TGCACAACACAAAGAAGGCG 59.900 50.000 0.00 0.00 0.00 5.52
3449 4855 1.536709 CCTGCACAACACAAAGAAGGC 60.537 52.381 0.00 0.00 0.00 4.35
3450 4856 2.023673 TCCTGCACAACACAAAGAAGG 58.976 47.619 0.00 0.00 0.00 3.46
3472 4878 0.846693 GGCCACCAGGTCCATAGAAT 59.153 55.000 0.00 0.00 37.19 2.40
3511 4917 3.480470 CAATGCCCTACTTACATCCCTG 58.520 50.000 0.00 0.00 0.00 4.45
3514 4920 2.230660 GCCAATGCCCTACTTACATCC 58.769 52.381 0.00 0.00 0.00 3.51
3519 4925 3.730215 TCTTTGCCAATGCCCTACTTA 57.270 42.857 0.00 0.00 36.33 2.24
3566 4972 1.439679 CCTAAGCCTGAAACGTCACC 58.560 55.000 0.00 0.00 0.00 4.02
3735 5141 6.094464 TGCCAACTCATGATTTCTCTGTATTG 59.906 38.462 0.00 0.00 0.00 1.90
3767 5173 8.359642 TGCAGTTGTATTTTCAGCTCTATTTTT 58.640 29.630 0.00 0.00 0.00 1.94
3783 5189 4.937620 CACTTACATGACCTGCAGTTGTAT 59.062 41.667 13.81 0.00 0.00 2.29
3872 5278 1.228657 GGCGTTTCTTCTGGCGTCTT 61.229 55.000 0.00 0.00 0.00 3.01
3883 5289 3.418684 AAATCTACACCAGGCGTTTCT 57.581 42.857 0.00 0.00 0.00 2.52
3897 5303 5.181245 GTGCTGCTTGTGTTCCTTAAATCTA 59.819 40.000 0.00 0.00 0.00 1.98
3922 5328 3.764466 CGCTCTCCTCCACCGCTT 61.764 66.667 0.00 0.00 0.00 4.68
3927 5333 0.109039 GTCTTCACGCTCTCCTCCAC 60.109 60.000 0.00 0.00 0.00 4.02
3939 5345 0.951040 CTTCTGCCCGGTGTCTTCAC 60.951 60.000 0.00 0.00 43.19 3.18
3947 5353 2.197324 TTTTGCCTTCTGCCCGGT 59.803 55.556 0.00 0.00 40.16 5.28
3953 5359 0.032540 GGTGCCTGTTTTGCCTTCTG 59.967 55.000 0.00 0.00 0.00 3.02
3991 5397 3.659786 TGTACCTTCACGGTTTCTGATG 58.340 45.455 0.00 0.00 46.37 3.07
3993 5399 2.036733 CCTGTACCTTCACGGTTTCTGA 59.963 50.000 0.00 0.00 46.37 3.27
4010 5417 1.912043 CACTTCCCTTGATCCTCCTGT 59.088 52.381 0.00 0.00 0.00 4.00
4034 5441 4.555348 TTGTATTGTTCGAACCAACACC 57.445 40.909 24.78 8.94 35.97 4.16
4044 5451 6.841119 TCTTGATGGATGTTTGTATTGTTCG 58.159 36.000 0.00 0.00 0.00 3.95
4091 5498 6.128336 GCATACTTCACCTCAATATCTGATGC 60.128 42.308 0.00 0.00 32.14 3.91
4139 5546 0.458543 AGGCACAACTCTACGCATCG 60.459 55.000 0.00 0.00 0.00 3.84
4288 5779 6.714810 AGTAATGCTCTCATGGTTTAACACAA 59.285 34.615 0.00 0.00 32.23 3.33
4411 5903 7.012421 CCCTTTTAGTAGTTGATATGGTTCAGC 59.988 40.741 0.00 0.00 0.00 4.26
4474 5966 0.179006 TGGCTGTGCACATTACACCA 60.179 50.000 22.00 18.78 37.22 4.17
4482 5974 5.296531 CACAATACTTATATGGCTGTGCACA 59.703 40.000 20.37 20.37 0.00 4.57
4483 5975 5.296780 ACACAATACTTATATGGCTGTGCAC 59.703 40.000 10.75 10.75 33.23 4.57
4486 5978 7.065683 TGTTCACACAATACTTATATGGCTGTG 59.934 37.037 11.89 11.89 34.93 3.66
4489 5981 7.553881 GTGTTCACACAATACTTATATGGCT 57.446 36.000 5.16 0.00 45.75 4.75
4522 6014 6.017440 CACGACACATCCTCCTTTTCTAAAAA 60.017 38.462 0.00 0.00 0.00 1.94
4523 6015 5.468746 CACGACACATCCTCCTTTTCTAAAA 59.531 40.000 0.00 0.00 0.00 1.52
4524 6016 4.994852 CACGACACATCCTCCTTTTCTAAA 59.005 41.667 0.00 0.00 0.00 1.85
4525 6017 4.562757 CCACGACACATCCTCCTTTTCTAA 60.563 45.833 0.00 0.00 0.00 2.10
4526 6018 3.056107 CCACGACACATCCTCCTTTTCTA 60.056 47.826 0.00 0.00 0.00 2.10
4527 6019 2.289694 CCACGACACATCCTCCTTTTCT 60.290 50.000 0.00 0.00 0.00 2.52
4528 6020 2.076863 CCACGACACATCCTCCTTTTC 58.923 52.381 0.00 0.00 0.00 2.29
4529 6021 1.420138 ACCACGACACATCCTCCTTTT 59.580 47.619 0.00 0.00 0.00 2.27
4530 6022 1.056660 ACCACGACACATCCTCCTTT 58.943 50.000 0.00 0.00 0.00 3.11
4531 6023 1.002087 GAACCACGACACATCCTCCTT 59.998 52.381 0.00 0.00 0.00 3.36
4532 6024 0.608640 GAACCACGACACATCCTCCT 59.391 55.000 0.00 0.00 0.00 3.69
4533 6025 0.608640 AGAACCACGACACATCCTCC 59.391 55.000 0.00 0.00 0.00 4.30
4534 6026 3.512680 CTTAGAACCACGACACATCCTC 58.487 50.000 0.00 0.00 0.00 3.71
4535 6027 2.353803 GCTTAGAACCACGACACATCCT 60.354 50.000 0.00 0.00 0.00 3.24
4536 6028 2.000447 GCTTAGAACCACGACACATCC 59.000 52.381 0.00 0.00 0.00 3.51
4537 6029 2.000447 GGCTTAGAACCACGACACATC 59.000 52.381 0.00 0.00 0.00 3.06
4538 6030 1.623811 AGGCTTAGAACCACGACACAT 59.376 47.619 0.00 0.00 0.00 3.21
4539 6031 1.045407 AGGCTTAGAACCACGACACA 58.955 50.000 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.