Multiple sequence alignment - TraesCS6A01G235100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G235100 chr6A 100.000 2523 0 0 864 3386 444675345 444672823 0.000000e+00 4660.0
1 TraesCS6A01G235100 chr6A 100.000 482 0 0 1 482 444676208 444675727 0.000000e+00 891.0
2 TraesCS6A01G235100 chr6D 93.404 2532 107 27 866 3385 307518229 307515746 0.000000e+00 3696.0
3 TraesCS6A01G235100 chr6D 89.249 493 17 12 4 482 307518800 307518330 4.870000e-163 584.0
4 TraesCS6A01G235100 chr6D 83.799 179 27 2 1638 1815 388951404 388951227 5.810000e-38 169.0
5 TraesCS6A01G235100 chr6D 94.286 35 1 1 2764 2798 97559641 97559674 6.000000e-03 52.8
6 TraesCS6A01G235100 chr6B 94.227 2269 84 11 864 3132 474750201 474747980 0.000000e+00 3421.0
7 TraesCS6A01G235100 chr6B 90.682 440 9 4 56 482 474750696 474750276 1.060000e-154 556.0
8 TraesCS6A01G235100 chr6B 94.286 35 1 1 2764 2798 27633303 27633270 6.000000e-03 52.8
9 TraesCS6A01G235100 chr2A 86.391 338 40 5 1534 1868 616992668 616993002 6.900000e-97 364.0
10 TraesCS6A01G235100 chr2B 86.350 337 40 5 1534 1867 555384883 555385216 2.480000e-96 363.0
11 TraesCS6A01G235100 chr2D 85.714 336 42 5 1534 1866 474512336 474512668 1.930000e-92 350.0
12 TraesCS6A01G235100 chr7B 84.153 183 29 0 1640 1822 99089374 99089192 9.650000e-41 178.0
13 TraesCS6A01G235100 chr7B 94.286 35 1 1 2764 2798 145928576 145928543 6.000000e-03 52.8
14 TraesCS6A01G235100 chr7A 83.607 183 30 0 1640 1822 135689646 135689464 4.490000e-39 172.0
15 TraesCS6A01G235100 chr7D 83.060 183 31 0 1640 1822 136204684 136204502 2.090000e-37 167.0
16 TraesCS6A01G235100 chr5B 94.286 35 1 1 2764 2798 504044652 504044685 6.000000e-03 52.8
17 TraesCS6A01G235100 chr4D 94.286 35 1 1 2764 2798 455258045 455258012 6.000000e-03 52.8
18 TraesCS6A01G235100 chr3B 94.286 35 1 1 2764 2798 85094444 85094411 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G235100 chr6A 444672823 444676208 3385 True 2775.5 4660 100.0000 1 3386 2 chr6A.!!$R1 3385
1 TraesCS6A01G235100 chr6D 307515746 307518800 3054 True 2140.0 3696 91.3265 4 3385 2 chr6D.!!$R2 3381
2 TraesCS6A01G235100 chr6B 474747980 474750696 2716 True 1988.5 3421 92.4545 56 3132 2 chr6B.!!$R2 3076

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
921 958 0.386476 TCGTACGTGAGTTGCTTGGT 59.614 50.0 16.05 0.0 46.4 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2832 2875 0.60613 AACGTGCATGGCAGATGTGA 60.606 50.0 11.36 0.0 40.08 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 34 4.467198 AACGTCGGAATATTGGAGAAGT 57.533 40.909 0.00 0.00 0.00 3.01
32 35 5.587388 AACGTCGGAATATTGGAGAAGTA 57.413 39.130 0.00 0.00 0.00 2.24
33 36 5.184340 ACGTCGGAATATTGGAGAAGTAG 57.816 43.478 0.00 0.00 0.00 2.57
34 37 4.643784 ACGTCGGAATATTGGAGAAGTAGT 59.356 41.667 0.00 0.00 0.00 2.73
35 38 5.824624 ACGTCGGAATATTGGAGAAGTAGTA 59.175 40.000 0.00 0.00 0.00 1.82
41 44 7.572724 CGGAATATTGGAGAAGTAGTAGTACCG 60.573 44.444 4.02 0.00 0.00 4.02
49 52 5.256474 AGAAGTAGTAGTACCGGCTTAACA 58.744 41.667 0.00 0.00 0.00 2.41
50 53 5.711976 AGAAGTAGTAGTACCGGCTTAACAA 59.288 40.000 0.00 0.00 0.00 2.83
51 54 5.316327 AGTAGTAGTACCGGCTTAACAAC 57.684 43.478 0.00 0.00 0.00 3.32
52 55 5.012893 AGTAGTAGTACCGGCTTAACAACT 58.987 41.667 0.00 0.00 0.00 3.16
53 56 4.184079 AGTAGTACCGGCTTAACAACTG 57.816 45.455 0.00 0.00 0.00 3.16
54 57 2.467566 AGTACCGGCTTAACAACTGG 57.532 50.000 0.00 0.00 38.37 4.00
104 107 1.601759 TCAGCCTGCCAGCAAGAAC 60.602 57.895 0.00 0.00 34.23 3.01
396 412 4.030452 GCCACACAGCGACAAGGC 62.030 66.667 0.00 0.00 34.71 4.35
397 413 2.591429 CCACACAGCGACAAGGCA 60.591 61.111 0.00 0.00 34.64 4.75
398 414 2.186160 CCACACAGCGACAAGGCAA 61.186 57.895 0.00 0.00 34.64 4.52
441 457 2.367202 TGGAACATCCCCGAGCTCC 61.367 63.158 8.47 0.00 35.03 4.70
921 958 0.386476 TCGTACGTGAGTTGCTTGGT 59.614 50.000 16.05 0.00 46.40 3.67
922 959 1.202440 TCGTACGTGAGTTGCTTGGTT 60.202 47.619 16.05 0.00 46.40 3.67
923 960 1.595794 CGTACGTGAGTTGCTTGGTTT 59.404 47.619 7.22 0.00 46.40 3.27
924 961 2.348218 CGTACGTGAGTTGCTTGGTTTC 60.348 50.000 7.22 0.00 46.40 2.78
925 962 0.655733 ACGTGAGTTGCTTGGTTTCG 59.344 50.000 0.00 0.00 46.40 3.46
926 963 0.655733 CGTGAGTTGCTTGGTTTCGT 59.344 50.000 0.00 0.00 0.00 3.85
927 964 1.332904 CGTGAGTTGCTTGGTTTCGTC 60.333 52.381 0.00 0.00 0.00 4.20
928 965 1.940613 GTGAGTTGCTTGGTTTCGTCT 59.059 47.619 0.00 0.00 0.00 4.18
929 966 2.032808 GTGAGTTGCTTGGTTTCGTCTC 60.033 50.000 0.00 0.00 0.00 3.36
930 967 1.192534 GAGTTGCTTGGTTTCGTCTCG 59.807 52.381 0.00 0.00 0.00 4.04
931 968 0.935196 GTTGCTTGGTTTCGTCTCGT 59.065 50.000 0.00 0.00 0.00 4.18
932 969 1.070776 GTTGCTTGGTTTCGTCTCGTC 60.071 52.381 0.00 0.00 0.00 4.20
933 970 0.387929 TGCTTGGTTTCGTCTCGTCT 59.612 50.000 0.00 0.00 0.00 4.18
934 971 0.784778 GCTTGGTTTCGTCTCGTCTG 59.215 55.000 0.00 0.00 0.00 3.51
935 972 0.784778 CTTGGTTTCGTCTCGTCTGC 59.215 55.000 0.00 0.00 0.00 4.26
936 973 0.937699 TTGGTTTCGTCTCGTCTGCG 60.938 55.000 0.00 0.00 39.92 5.18
937 974 2.087009 GGTTTCGTCTCGTCTGCGG 61.087 63.158 0.00 0.00 38.89 5.69
938 975 2.430244 TTTCGTCTCGTCTGCGGC 60.430 61.111 0.00 0.00 38.89 6.53
939 976 4.753877 TTCGTCTCGTCTGCGGCG 62.754 66.667 0.51 0.51 38.89 6.46
1007 1044 1.812571 GCGAGTTGTTGGAATGGATGT 59.187 47.619 0.00 0.00 0.00 3.06
1020 1057 0.980754 TGGATGTGGCGGATAGTGGT 60.981 55.000 0.00 0.00 0.00 4.16
1024 1061 4.155733 TGGCGGATAGTGGTGGCG 62.156 66.667 0.00 0.00 0.00 5.69
1025 1062 4.910585 GGCGGATAGTGGTGGCGG 62.911 72.222 0.00 0.00 0.00 6.13
1026 1063 4.157120 GCGGATAGTGGTGGCGGT 62.157 66.667 0.00 0.00 0.00 5.68
1027 1064 2.202878 CGGATAGTGGTGGCGGTG 60.203 66.667 0.00 0.00 0.00 4.94
1028 1065 2.987125 GGATAGTGGTGGCGGTGT 59.013 61.111 0.00 0.00 0.00 4.16
1029 1066 1.153429 GGATAGTGGTGGCGGTGTC 60.153 63.158 0.00 0.00 0.00 3.67
1030 1067 1.153429 GATAGTGGTGGCGGTGTCC 60.153 63.158 0.00 0.00 0.00 4.02
1300 1337 3.017314 CGTCGACGCGGCAGATAC 61.017 66.667 26.59 2.82 0.00 2.24
1380 1417 1.270907 ACTCCTCCAGCTTGTACCAG 58.729 55.000 0.00 0.00 0.00 4.00
1383 1420 0.036732 CCTCCAGCTTGTACCAGCAA 59.963 55.000 20.04 5.34 42.84 3.91
1386 1423 1.244019 CCAGCTTGTACCAGCAACCC 61.244 60.000 20.04 0.00 42.84 4.11
1434 1471 1.895707 GCAGCAGCACACACCTTCT 60.896 57.895 0.00 0.00 41.58 2.85
1485 1528 2.255554 CAGCAGCAGCAGCAGTTG 59.744 61.111 12.92 0.00 45.49 3.16
1566 1609 4.021925 GCGGCCCTGAACCTGAGT 62.022 66.667 0.00 0.00 0.00 3.41
1824 1867 1.348036 CTCAACTTCCCCGACCTCTTT 59.652 52.381 0.00 0.00 0.00 2.52
1971 2014 2.554775 CAGCGTGAACAGCAGCAG 59.445 61.111 0.00 0.00 37.01 4.24
1974 2017 3.024784 CGTGAACAGCAGCAGCAA 58.975 55.556 3.17 0.00 45.49 3.91
1999 2042 1.355971 GGACGAGCAAGCGAACATTA 58.644 50.000 0.00 0.00 34.83 1.90
2033 2076 4.834453 CTCCGCAGCAGAGCAGGG 62.834 72.222 0.00 0.00 0.00 4.45
2220 2263 1.878522 CTACGACATGGACAGCGCC 60.879 63.158 2.29 0.00 0.00 6.53
2223 2266 3.127533 GACATGGACAGCGCCCAC 61.128 66.667 2.29 0.00 36.36 4.61
2352 2395 2.131067 CGCTCCCCCTTCTCCTCTC 61.131 68.421 0.00 0.00 0.00 3.20
2393 2436 0.601558 TGGAAGGACTAGACACGCAC 59.398 55.000 0.00 0.00 0.00 5.34
2394 2437 0.108756 GGAAGGACTAGACACGCACC 60.109 60.000 0.00 0.00 0.00 5.01
2420 2463 3.982475 TCTCTGAACATCTCACACACAC 58.018 45.455 0.00 0.00 0.00 3.82
2421 2464 3.384467 TCTCTGAACATCTCACACACACA 59.616 43.478 0.00 0.00 0.00 3.72
2422 2465 4.122046 CTCTGAACATCTCACACACACAA 58.878 43.478 0.00 0.00 0.00 3.33
2423 2466 4.122046 TCTGAACATCTCACACACACAAG 58.878 43.478 0.00 0.00 0.00 3.16
2424 2467 3.872696 TGAACATCTCACACACACAAGT 58.127 40.909 0.00 0.00 0.00 3.16
2425 2468 5.017294 TGAACATCTCACACACACAAGTA 57.983 39.130 0.00 0.00 0.00 2.24
2426 2469 4.808895 TGAACATCTCACACACACAAGTAC 59.191 41.667 0.00 0.00 0.00 2.73
2427 2470 4.400529 ACATCTCACACACACAAGTACA 57.599 40.909 0.00 0.00 0.00 2.90
2514 2557 2.287103 CACATCGCAGGAACATCTCATG 59.713 50.000 0.00 0.00 38.91 3.07
2811 2854 9.624697 TGAATAATTGTGTTTTCTGCAGTATTC 57.375 29.630 14.67 14.65 0.00 1.75
2832 2875 5.708736 TCTTGAACCATATATGTGGGTGT 57.291 39.130 21.23 7.29 39.93 4.16
2848 2891 0.169672 GTGTCACATCTGCCATGCAC 59.830 55.000 0.00 0.00 33.79 4.57
2866 2909 7.015289 CCATGCACGTTATATGTATTGTTAGC 58.985 38.462 0.00 0.00 0.00 3.09
2905 2948 4.470602 TGATAGCTCTTACTCCATCCGAA 58.529 43.478 0.00 0.00 0.00 4.30
2911 2954 4.575885 CTCTTACTCCATCCGAACCAAAA 58.424 43.478 0.00 0.00 0.00 2.44
2912 2955 5.174037 TCTTACTCCATCCGAACCAAAAT 57.826 39.130 0.00 0.00 0.00 1.82
2913 2956 4.941263 TCTTACTCCATCCGAACCAAAATG 59.059 41.667 0.00 0.00 0.00 2.32
2969 3012 6.991485 AGTTTAAGATTGCAACGTTCATTG 57.009 33.333 0.00 0.00 0.00 2.82
2981 3024 1.134818 CGTTCATTGTGGATCGGAGGA 60.135 52.381 0.00 0.00 0.00 3.71
2986 3029 0.911769 TTGTGGATCGGAGGAAGCAT 59.088 50.000 0.00 0.00 0.00 3.79
3010 3053 9.185192 CATTTGTTTTAGTCAATGAAGTCTTCC 57.815 33.333 10.12 0.00 0.00 3.46
3024 3067 6.494842 TGAAGTCTTCCGATTTTGTTTTCAG 58.505 36.000 10.12 0.00 0.00 3.02
3047 3090 6.421801 CAGCTCATCATGTACACGAATATGAA 59.578 38.462 0.00 0.00 33.71 2.57
3110 3153 5.273944 AGTGATTTTGTTTTCAGCTCGTTC 58.726 37.500 0.00 0.00 0.00 3.95
3149 3192 4.521146 AGAGATTAAGTTGCTCATGTGGG 58.479 43.478 0.00 0.00 0.00 4.61
3173 3222 3.063588 GCGTGAGTTTGTTAAGATAGCCC 59.936 47.826 0.00 0.00 0.00 5.19
3177 3226 3.869832 GAGTTTGTTAAGATAGCCCGGTC 59.130 47.826 0.00 0.00 0.00 4.79
3196 3245 5.107065 CCGGTCACAAAATAGAGTTTCTCAC 60.107 44.000 0.00 0.00 32.06 3.51
3215 3264 3.691118 TCACTGTCTTGCCAATTATGCTC 59.309 43.478 1.40 0.00 0.00 4.26
3219 3268 1.401552 TCTTGCCAATTATGCTCGCAC 59.598 47.619 0.00 0.00 0.00 5.34
3235 3284 1.298157 GCACAGCTCACAATACCGCA 61.298 55.000 0.00 0.00 0.00 5.69
3243 3292 2.080693 TCACAATACCGCATGTTGGTC 58.919 47.619 14.05 0.00 40.96 4.02
3260 3309 0.535335 GTCACATCGAGGGCCACTTA 59.465 55.000 6.18 0.00 0.00 2.24
3341 3390 2.840102 CCCCCGCACCCAACAAAA 60.840 61.111 0.00 0.00 0.00 2.44
3342 3391 2.435693 CCCCCGCACCCAACAAAAA 61.436 57.895 0.00 0.00 0.00 1.94
3385 3434 6.013379 AGGGTTTCATGATCTTCTCTAACACA 60.013 38.462 0.00 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.741358 CCAATATTCCGACGTTTTTCTTCTTC 59.259 38.462 0.00 0.00 0.00 2.87
1 2 6.428771 TCCAATATTCCGACGTTTTTCTTCTT 59.571 34.615 0.00 0.00 0.00 2.52
2 3 5.935789 TCCAATATTCCGACGTTTTTCTTCT 59.064 36.000 0.00 0.00 0.00 2.85
31 34 4.158394 CCAGTTGTTAAGCCGGTACTACTA 59.842 45.833 1.90 0.00 0.00 1.82
32 35 3.056322 CCAGTTGTTAAGCCGGTACTACT 60.056 47.826 1.90 6.39 0.00 2.57
33 36 3.056607 TCCAGTTGTTAAGCCGGTACTAC 60.057 47.826 1.90 4.15 0.00 2.73
34 37 3.164268 TCCAGTTGTTAAGCCGGTACTA 58.836 45.455 1.90 0.00 0.00 1.82
35 38 1.972795 TCCAGTTGTTAAGCCGGTACT 59.027 47.619 1.90 0.00 0.00 2.73
41 44 2.858745 TCCAGTTCCAGTTGTTAAGCC 58.141 47.619 0.00 0.00 0.00 4.35
49 52 2.224867 CCCATCACTTCCAGTTCCAGTT 60.225 50.000 0.00 0.00 0.00 3.16
50 53 1.352352 CCCATCACTTCCAGTTCCAGT 59.648 52.381 0.00 0.00 0.00 4.00
51 54 1.952367 GCCCATCACTTCCAGTTCCAG 60.952 57.143 0.00 0.00 0.00 3.86
52 55 0.038166 GCCCATCACTTCCAGTTCCA 59.962 55.000 0.00 0.00 0.00 3.53
53 56 0.038166 TGCCCATCACTTCCAGTTCC 59.962 55.000 0.00 0.00 0.00 3.62
54 57 2.134789 ATGCCCATCACTTCCAGTTC 57.865 50.000 0.00 0.00 0.00 3.01
68 71 0.744771 GACCGAGTTGGAGAATGCCC 60.745 60.000 2.42 0.00 42.00 5.36
104 107 1.135315 CTCCACTGCCAAAATCGCG 59.865 57.895 0.00 0.00 0.00 5.87
149 152 2.092429 TCCTTGCACTACAATCCCATCC 60.092 50.000 0.00 0.00 37.72 3.51
247 250 2.281484 GTGCGCTGGAAGGTGGAA 60.281 61.111 9.73 0.00 0.00 3.53
248 251 4.680237 CGTGCGCTGGAAGGTGGA 62.680 66.667 9.73 0.00 0.00 4.02
395 411 1.256895 GAAAACGAAAAAGGCGGTTGC 59.743 47.619 0.00 0.00 38.86 4.17
396 412 2.280445 GTGAAAACGAAAAAGGCGGTTG 59.720 45.455 0.00 0.00 38.86 3.77
397 413 2.532235 GTGAAAACGAAAAAGGCGGTT 58.468 42.857 0.00 0.00 40.92 4.44
398 414 1.202325 GGTGAAAACGAAAAAGGCGGT 60.202 47.619 0.00 0.00 0.00 5.68
441 457 0.310854 GCGGGCGAGATATTTTTGGG 59.689 55.000 0.00 0.00 0.00 4.12
921 958 2.430244 GCCGCAGACGAGACGAAA 60.430 61.111 0.00 0.00 43.93 3.46
922 959 4.753877 CGCCGCAGACGAGACGAA 62.754 66.667 0.00 0.00 43.93 3.85
1007 1044 4.155733 CGCCACCACTATCCGCCA 62.156 66.667 0.00 0.00 0.00 5.69
1674 1717 1.299976 GATCTCCGCCACCCACTTT 59.700 57.895 0.00 0.00 0.00 2.66
1717 1760 2.045926 GAAGGTGCCGAGCCACAT 60.046 61.111 0.00 0.00 37.46 3.21
1923 1966 4.487412 GCTTGCTGCGCATGGGTC 62.487 66.667 12.24 4.58 38.76 4.46
1971 2014 2.430080 CTTGCTCGTCCGTGTGTTGC 62.430 60.000 0.00 0.00 0.00 4.17
1974 2017 2.661866 GCTTGCTCGTCCGTGTGT 60.662 61.111 0.00 0.00 0.00 3.72
2220 2263 1.258445 ACTGGAGTAAGAGGCCGTGG 61.258 60.000 0.00 0.00 0.00 4.94
2223 2266 0.741915 GAGACTGGAGTAAGAGGCCG 59.258 60.000 0.00 0.00 0.00 6.13
2352 2395 1.758906 GAAGGGAGGACGAGGAGGG 60.759 68.421 0.00 0.00 0.00 4.30
2393 2436 2.121948 TGAGATGTTCAGAGATGGGGG 58.878 52.381 0.00 0.00 0.00 5.40
2394 2437 2.502947 TGTGAGATGTTCAGAGATGGGG 59.497 50.000 0.00 0.00 36.21 4.96
2420 2463 3.442977 AGCGTAGGTAGGTTCTGTACTTG 59.557 47.826 0.00 0.00 35.08 3.16
2421 2464 3.442977 CAGCGTAGGTAGGTTCTGTACTT 59.557 47.826 0.00 0.00 35.08 2.24
2422 2465 3.015327 CAGCGTAGGTAGGTTCTGTACT 58.985 50.000 0.00 0.00 35.08 2.73
2423 2466 2.751806 ACAGCGTAGGTAGGTTCTGTAC 59.248 50.000 0.00 0.00 35.08 2.90
2424 2467 2.751259 CACAGCGTAGGTAGGTTCTGTA 59.249 50.000 0.00 0.00 35.08 2.74
2425 2468 1.544691 CACAGCGTAGGTAGGTTCTGT 59.455 52.381 0.00 0.00 35.08 3.41
2426 2469 1.816835 TCACAGCGTAGGTAGGTTCTG 59.183 52.381 0.00 0.00 35.08 3.02
2427 2470 2.093106 CTCACAGCGTAGGTAGGTTCT 58.907 52.381 0.00 0.00 35.08 3.01
2514 2557 6.159988 TCGATCAGAGAGAAAAGAAAAGGTC 58.840 40.000 0.00 0.00 0.00 3.85
2675 2718 0.868406 CAGGAAACAACTGACGAGCC 59.132 55.000 0.00 0.00 38.20 4.70
2680 2723 4.574599 AAAGATGCAGGAAACAACTGAC 57.425 40.909 0.00 0.00 38.20 3.51
2811 2854 5.296780 GTGACACCCACATATATGGTTCAAG 59.703 44.000 16.96 5.03 45.03 3.02
2832 2875 0.606130 AACGTGCATGGCAGATGTGA 60.606 50.000 11.36 0.00 40.08 3.58
2889 2932 3.887621 TTGGTTCGGATGGAGTAAGAG 57.112 47.619 0.00 0.00 0.00 2.85
2905 2948 2.341846 ACCGTGACACTCATTTTGGT 57.658 45.000 3.68 0.00 0.00 3.67
2911 2954 3.541632 AGTTCAAAACCGTGACACTCAT 58.458 40.909 3.68 0.00 0.00 2.90
2912 2955 2.980568 AGTTCAAAACCGTGACACTCA 58.019 42.857 3.68 0.00 0.00 3.41
2913 2956 5.473796 TTTAGTTCAAAACCGTGACACTC 57.526 39.130 3.68 0.00 0.00 3.51
2950 2993 4.517075 TCCACAATGAACGTTGCAATCTTA 59.483 37.500 5.00 0.00 32.32 2.10
2953 2996 3.281341 TCCACAATGAACGTTGCAATC 57.719 42.857 5.00 0.00 32.32 2.67
2959 3002 2.346803 CTCCGATCCACAATGAACGTT 58.653 47.619 0.00 0.00 0.00 3.99
2963 3006 2.680805 GCTTCCTCCGATCCACAATGAA 60.681 50.000 0.00 0.00 0.00 2.57
2969 3012 1.672881 CAAATGCTTCCTCCGATCCAC 59.327 52.381 0.00 0.00 0.00 4.02
2981 3024 8.416329 AGACTTCATTGACTAAAACAAATGCTT 58.584 29.630 0.00 0.00 0.00 3.91
2986 3029 7.281324 TCGGAAGACTTCATTGACTAAAACAAA 59.719 33.333 16.85 0.00 33.31 2.83
3010 3053 5.860182 ACATGATGAGCTGAAAACAAAATCG 59.140 36.000 0.00 0.00 0.00 3.34
3024 3067 6.200854 TGTTCATATTCGTGTACATGATGAGC 59.799 38.462 18.26 18.87 0.00 4.26
3047 3090 8.820831 TCTCTTCATCTAAAAATCTTCTCCTGT 58.179 33.333 0.00 0.00 0.00 4.00
3086 3129 6.037720 TGAACGAGCTGAAAACAAAATCACTA 59.962 34.615 0.00 0.00 0.00 2.74
3103 3146 1.512926 ACAAGTGACCATGAACGAGC 58.487 50.000 0.00 0.00 0.00 5.03
3110 3153 6.808008 AATCTCTTGTAACAAGTGACCATG 57.192 37.500 0.00 0.00 0.00 3.66
3149 3192 4.033014 GGCTATCTTAACAAACTCACGCTC 59.967 45.833 0.00 0.00 0.00 5.03
3173 3222 5.696724 AGTGAGAAACTCTATTTTGTGACCG 59.303 40.000 0.00 0.00 31.64 4.79
3177 3226 7.721286 AGACAGTGAGAAACTCTATTTTGTG 57.279 36.000 0.00 0.00 36.83 3.33
3196 3245 2.540361 GCGAGCATAATTGGCAAGACAG 60.540 50.000 5.96 0.00 0.00 3.51
3215 3264 1.709760 CGGTATTGTGAGCTGTGCG 59.290 57.895 0.00 0.00 0.00 5.34
3219 3268 1.372582 ACATGCGGTATTGTGAGCTG 58.627 50.000 0.00 0.00 0.00 4.24
3225 3274 1.810151 GTGACCAACATGCGGTATTGT 59.190 47.619 7.37 0.00 36.69 2.71
3243 3292 2.332063 AATAAGTGGCCCTCGATGTG 57.668 50.000 0.00 0.00 0.00 3.21
3343 3392 6.157123 TGAAACCCTAAGTTCCCATTGTTTTT 59.843 34.615 0.00 0.00 37.88 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.