Multiple sequence alignment - TraesCS6A01G233900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G233900 chr6A 100.000 3442 0 0 1 3442 441495886 441499327 0.000000e+00 6357
1 TraesCS6A01G233900 chr6D 86.840 2538 184 58 3 2485 306133971 306136413 0.000000e+00 2699
2 TraesCS6A01G233900 chr6D 87.218 399 31 6 2894 3288 306136723 306137105 1.470000e-118 436
3 TraesCS6A01G233900 chr6D 92.903 155 10 1 3289 3442 306137161 306137315 1.240000e-54 224
4 TraesCS6A01G233900 chr6B 83.716 1787 152 70 1 1742 473059948 473061640 0.000000e+00 1559
5 TraesCS6A01G233900 chr6B 93.907 755 35 5 1740 2485 473061731 473062483 0.000000e+00 1129
6 TraesCS6A01G233900 chr6B 84.946 279 27 6 2832 3105 473062653 473062921 5.660000e-68 268
7 TraesCS6A01G233900 chr6B 92.222 180 13 1 3110 3288 473067023 473067202 1.590000e-63 254
8 TraesCS6A01G233900 chr5D 91.367 139 10 2 2693 2830 279306597 279306734 4.530000e-44 189
9 TraesCS6A01G233900 chr7D 92.424 132 9 1 2702 2833 24957129 24956999 1.630000e-43 187
10 TraesCS6A01G233900 chr1B 91.852 135 9 2 2702 2836 459326186 459326054 1.630000e-43 187
11 TraesCS6A01G233900 chr1B 95.833 96 2 2 888 982 583974451 583974545 1.650000e-33 154
12 TraesCS6A01G233900 chr7B 92.366 131 9 1 2702 2832 478686199 478686328 5.870000e-43 185
13 TraesCS6A01G233900 chr7B 96.703 91 2 1 892 982 657534424 657534513 2.140000e-32 150
14 TraesCS6A01G233900 chr7B 94.059 101 3 1 887 987 657606597 657606500 2.140000e-32 150
15 TraesCS6A01G233900 chr2D 90.071 141 12 2 2692 2832 451959034 451958896 7.590000e-42 182
16 TraesCS6A01G233900 chr5B 90.071 141 11 3 2702 2840 41762986 41762847 2.730000e-41 180
17 TraesCS6A01G233900 chr5B 91.603 131 10 1 2702 2832 92304127 92304256 2.730000e-41 180
18 TraesCS6A01G233900 chr5B 90.071 141 11 3 2702 2840 551926958 551926819 2.730000e-41 180
19 TraesCS6A01G233900 chr3D 90.909 132 10 2 2699 2830 565073751 565073622 3.530000e-40 176
20 TraesCS6A01G233900 chr3D 95.918 98 2 2 885 982 16496811 16496906 1.280000e-34 158
21 TraesCS6A01G233900 chr3D 95.833 96 2 2 885 979 394196364 394196270 1.650000e-33 154
22 TraesCS6A01G233900 chr7A 95.833 96 3 1 892 987 677846350 677846256 1.650000e-33 154
23 TraesCS6A01G233900 chr3B 94.000 100 2 4 891 990 723273019 723272924 7.700000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G233900 chr6A 441495886 441499327 3441 False 6357.000000 6357 100.000 1 3442 1 chr6A.!!$F1 3441
1 TraesCS6A01G233900 chr6D 306133971 306137315 3344 False 1119.666667 2699 88.987 3 3442 3 chr6D.!!$F1 3439
2 TraesCS6A01G233900 chr6B 473059948 473062921 2973 False 985.333333 1559 87.523 1 3105 3 chr6B.!!$F2 3104

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
816 886 0.462759 GATTCTCAGCTGGAACCCCG 60.463 60.0 15.13 0.0 34.29 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2671 3005 0.028902 ACACGAGCAAAGTTTTCGCC 59.971 50.0 9.13 0.0 37.84 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 93 2.336088 CAAACCGCTGTTGGCAGG 59.664 61.111 0.00 0.00 42.78 4.85
93 98 3.594775 CGCTGTTGGCAGGCACAA 61.595 61.111 0.00 0.00 42.78 3.33
120 138 3.329301 GCTCGCAGCTCGCTGATC 61.329 66.667 22.09 4.91 46.30 2.92
130 148 0.938637 CTCGCTGATCGGATGCAGAC 60.939 60.000 5.48 9.69 39.05 3.51
133 151 1.067084 CTGATCGGATGCAGACGCT 59.933 57.895 7.84 0.00 39.64 5.07
134 152 1.213733 CTGATCGGATGCAGACGCTG 61.214 60.000 7.84 2.92 39.64 5.18
135 153 1.953138 GATCGGATGCAGACGCTGG 60.953 63.158 7.84 0.00 39.64 4.85
136 154 2.635229 GATCGGATGCAGACGCTGGT 62.635 60.000 7.84 0.00 39.64 4.00
257 275 1.870064 ATTCCTCCTTTGCCATTGGG 58.130 50.000 4.53 0.00 37.18 4.12
259 277 1.686800 CCTCCTTTGCCATTGGGGG 60.687 63.158 4.53 0.00 37.04 5.40
308 332 4.662961 CGCACTGTCGTCCCTGCA 62.663 66.667 0.00 0.00 0.00 4.41
310 334 2.357517 CACTGTCGTCCCTGCACC 60.358 66.667 0.00 0.00 0.00 5.01
311 335 3.626924 ACTGTCGTCCCTGCACCC 61.627 66.667 0.00 0.00 0.00 4.61
367 400 1.671379 GGCCAGTTCTCCGGTGAAC 60.671 63.158 32.33 32.33 44.67 3.18
380 413 3.605743 CGGTGAACTCTCCGTACTATC 57.394 52.381 11.19 0.00 45.02 2.08
571 635 2.962786 CGCCACACGTGAAACCGA 60.963 61.111 25.01 0.00 36.87 4.69
572 636 2.935955 GCCACACGTGAAACCGAG 59.064 61.111 25.01 3.34 0.00 4.63
573 637 2.935955 CCACACGTGAAACCGAGC 59.064 61.111 25.01 0.00 0.00 5.03
574 638 1.594293 CCACACGTGAAACCGAGCT 60.594 57.895 25.01 0.00 0.00 4.09
575 639 1.564622 CACACGTGAAACCGAGCTG 59.435 57.895 25.01 2.17 0.00 4.24
576 640 0.874175 CACACGTGAAACCGAGCTGA 60.874 55.000 25.01 0.00 0.00 4.26
577 641 0.597637 ACACGTGAAACCGAGCTGAG 60.598 55.000 25.01 0.00 0.00 3.35
578 642 1.664965 ACGTGAAACCGAGCTGAGC 60.665 57.895 0.00 0.00 0.00 4.26
579 643 2.720758 CGTGAAACCGAGCTGAGCG 61.721 63.158 0.00 0.00 0.00 5.03
580 644 1.664965 GTGAAACCGAGCTGAGCGT 60.665 57.895 0.00 0.00 0.00 5.07
581 645 1.664649 TGAAACCGAGCTGAGCGTG 60.665 57.895 0.00 0.00 0.00 5.34
582 646 3.016474 GAAACCGAGCTGAGCGTGC 62.016 63.158 0.00 0.00 0.00 5.34
583 647 3.521529 AAACCGAGCTGAGCGTGCT 62.522 57.895 0.00 0.00 44.24 4.40
613 677 1.278413 GGACGGGACTAGGCTCTTTTT 59.722 52.381 0.00 0.00 0.00 1.94
674 738 2.902419 CGTGCGGTGTGAATTGCCA 61.902 57.895 0.00 0.00 0.00 4.92
679 743 0.798776 CGGTGTGAATTGCCACTCTC 59.201 55.000 0.00 0.00 37.89 3.20
730 795 5.484173 TGTATGTTGGATTTGCTCGAATC 57.516 39.130 2.00 2.00 35.71 2.52
803 873 5.814764 AGTGAAACATGATGCAGATTCTC 57.185 39.130 0.00 0.00 41.43 2.87
805 875 5.354513 AGTGAAACATGATGCAGATTCTCAG 59.645 40.000 0.00 0.00 41.43 3.35
807 877 3.562343 ACATGATGCAGATTCTCAGCT 57.438 42.857 0.00 0.00 29.62 4.24
808 878 3.206964 ACATGATGCAGATTCTCAGCTG 58.793 45.455 7.63 7.63 35.28 4.24
811 881 2.237893 TGATGCAGATTCTCAGCTGGAA 59.762 45.455 15.13 16.06 36.08 3.53
812 882 2.105006 TGCAGATTCTCAGCTGGAAC 57.895 50.000 15.13 10.51 32.83 3.62
813 883 1.339438 TGCAGATTCTCAGCTGGAACC 60.339 52.381 15.13 7.52 32.83 3.62
814 884 2.016096 GCAGATTCTCAGCTGGAACCC 61.016 57.143 15.13 11.25 32.83 4.11
815 885 0.915364 AGATTCTCAGCTGGAACCCC 59.085 55.000 15.13 9.11 0.00 4.95
816 886 0.462759 GATTCTCAGCTGGAACCCCG 60.463 60.000 15.13 0.00 34.29 5.73
817 887 2.543067 ATTCTCAGCTGGAACCCCGC 62.543 60.000 15.13 0.00 34.29 6.13
818 888 4.020617 CTCAGCTGGAACCCCGCA 62.021 66.667 15.13 0.00 35.44 5.69
819 889 3.551496 CTCAGCTGGAACCCCGCAA 62.551 63.158 15.13 0.00 35.44 4.85
820 890 2.597217 CAGCTGGAACCCCGCAAA 60.597 61.111 5.57 0.00 35.44 3.68
821 891 2.197324 AGCTGGAACCCCGCAAAA 59.803 55.556 2.44 0.00 35.44 2.44
822 892 1.456705 AGCTGGAACCCCGCAAAAA 60.457 52.632 2.44 0.00 35.44 1.94
855 925 9.905713 TCAGCTGGAACTAAATAAAATCTATGT 57.094 29.630 15.13 0.00 0.00 2.29
856 926 9.941664 CAGCTGGAACTAAATAAAATCTATGTG 57.058 33.333 5.57 0.00 0.00 3.21
858 928 9.937175 GCTGGAACTAAATAAAATCTATGTGAC 57.063 33.333 0.00 0.00 0.00 3.67
871 941 9.684448 AAAATCTATGTGACGACATATAGTCTG 57.316 33.333 23.15 6.83 42.87 3.51
879 949 6.807230 GTGACGACATATAGTCTGAAGTTTGT 59.193 38.462 0.00 0.00 45.32 2.83
883 953 6.020281 CGACATATAGTCTGAAGTTTGTCTGC 60.020 42.308 0.00 0.00 45.32 4.26
890 960 3.248363 TCTGAAGTTTGTCTGCAATCACG 59.752 43.478 0.00 0.00 34.18 4.35
1044 1115 5.505181 TCTAATTGTTCCTCTGCTTTCCT 57.495 39.130 0.00 0.00 0.00 3.36
1109 1180 2.466140 AACACACGACGCCACAACC 61.466 57.895 0.00 0.00 0.00 3.77
1162 1235 7.515643 TCTTTTCTTTGCTTATTACTGCGTAC 58.484 34.615 0.00 0.00 0.00 3.67
1201 1279 2.073816 CGAAGATTTTGTACCGCCAGT 58.926 47.619 0.00 0.00 0.00 4.00
1203 1281 3.680937 CGAAGATTTTGTACCGCCAGTTA 59.319 43.478 0.00 0.00 0.00 2.24
1211 1289 7.690952 TTTTGTACCGCCAGTTAATCTTATT 57.309 32.000 0.00 0.00 0.00 1.40
1212 1290 8.789825 TTTTGTACCGCCAGTTAATCTTATTA 57.210 30.769 0.00 0.00 0.00 0.98
1213 1291 8.967664 TTTGTACCGCCAGTTAATCTTATTAT 57.032 30.769 0.00 0.00 0.00 1.28
1239 1317 7.402361 TCTCCATTACCTAGATATAGGACTCGA 59.598 40.741 20.31 7.42 39.60 4.04
1272 1350 2.768833 AGAACCTTTTCGTTTTCGCC 57.231 45.000 0.00 0.00 43.73 5.54
1309 1387 1.917273 TCCGCTTCGAAAATACTCCG 58.083 50.000 0.00 0.00 0.00 4.63
1311 1389 0.044161 CGCTTCGAAAATACTCCGCG 60.044 55.000 9.27 9.27 0.00 6.46
1339 1417 6.535508 CCTACTAATTTCACTAACAGGAGTGC 59.464 42.308 0.00 0.00 45.44 4.40
1349 1427 5.755375 CACTAACAGGAGTGCGATATTTGAT 59.245 40.000 0.00 0.00 40.42 2.57
1353 1431 4.141620 ACAGGAGTGCGATATTTGATTCCT 60.142 41.667 0.00 0.00 34.27 3.36
1355 1433 4.818546 AGGAGTGCGATATTTGATTCCTTG 59.181 41.667 0.00 0.00 29.85 3.61
1356 1434 4.531332 GAGTGCGATATTTGATTCCTTGC 58.469 43.478 0.00 0.00 0.00 4.01
1361 1439 6.423905 GTGCGATATTTGATTCCTTGCTAGTA 59.576 38.462 0.00 0.00 0.00 1.82
1368 1446 6.677781 TTGATTCCTTGCTAGTATTTTCCG 57.322 37.500 0.00 0.00 0.00 4.30
1369 1447 4.574828 TGATTCCTTGCTAGTATTTTCCGC 59.425 41.667 0.00 0.00 0.00 5.54
1370 1448 2.914059 TCCTTGCTAGTATTTTCCGCC 58.086 47.619 0.00 0.00 0.00 6.13
1371 1449 2.504175 TCCTTGCTAGTATTTTCCGCCT 59.496 45.455 0.00 0.00 0.00 5.52
1372 1450 2.872858 CCTTGCTAGTATTTTCCGCCTC 59.127 50.000 0.00 0.00 0.00 4.70
1373 1451 3.531538 CTTGCTAGTATTTTCCGCCTCA 58.468 45.455 0.00 0.00 0.00 3.86
1374 1452 3.620427 TGCTAGTATTTTCCGCCTCAA 57.380 42.857 0.00 0.00 0.00 3.02
1375 1453 4.150897 TGCTAGTATTTTCCGCCTCAAT 57.849 40.909 0.00 0.00 0.00 2.57
1376 1454 4.127171 TGCTAGTATTTTCCGCCTCAATC 58.873 43.478 0.00 0.00 0.00 2.67
1377 1455 4.141711 TGCTAGTATTTTCCGCCTCAATCT 60.142 41.667 0.00 0.00 0.00 2.40
1378 1456 4.212214 GCTAGTATTTTCCGCCTCAATCTG 59.788 45.833 0.00 0.00 0.00 2.90
1444 1531 7.308782 CCATCTAGGTAACAGATTTTGTGTC 57.691 40.000 0.00 0.00 40.74 3.67
1445 1532 6.036083 CCATCTAGGTAACAGATTTTGTGTCG 59.964 42.308 0.00 0.00 40.74 4.35
1446 1533 5.475719 TCTAGGTAACAGATTTTGTGTCGG 58.524 41.667 0.00 0.00 40.74 4.79
1450 1537 5.181245 AGGTAACAGATTTTGTGTCGGATTG 59.819 40.000 0.00 0.00 40.74 2.67
1451 1538 3.559238 ACAGATTTTGTGTCGGATTGC 57.441 42.857 0.00 0.00 38.99 3.56
1454 1541 4.100529 CAGATTTTGTGTCGGATTGCATC 58.899 43.478 0.00 0.00 0.00 3.91
1502 1595 5.957842 TTGCATCGTCTAGGTTTTGATTT 57.042 34.783 0.00 0.00 0.00 2.17
1503 1596 7.624360 ATTGCATCGTCTAGGTTTTGATTTA 57.376 32.000 0.00 0.00 0.00 1.40
1504 1597 7.624360 TTGCATCGTCTAGGTTTTGATTTAT 57.376 32.000 0.00 0.00 0.00 1.40
1505 1598 7.015226 TGCATCGTCTAGGTTTTGATTTATG 57.985 36.000 0.00 0.00 0.00 1.90
1506 1599 6.597672 TGCATCGTCTAGGTTTTGATTTATGT 59.402 34.615 0.00 0.00 0.00 2.29
1507 1600 7.766738 TGCATCGTCTAGGTTTTGATTTATGTA 59.233 33.333 0.00 0.00 0.00 2.29
1524 1617 9.686683 GATTTATGTATATCTGGGGCTTACAAT 57.313 33.333 0.00 0.00 0.00 2.71
1579 1672 3.923017 AAAAGTTAGCATCAGTGGTGC 57.077 42.857 21.11 21.11 42.81 5.01
1599 1692 2.222819 GCTGTTAGGCTGTTTTCGATCG 60.223 50.000 9.36 9.36 0.00 3.69
1600 1693 3.250744 CTGTTAGGCTGTTTTCGATCGA 58.749 45.455 15.15 15.15 0.00 3.59
1606 1699 2.418628 GGCTGTTTTCGATCGATTCCAA 59.581 45.455 20.18 7.29 0.00 3.53
1633 1726 6.723515 TGGATGGTAATTTTGTCAATCAAGGA 59.276 34.615 0.00 0.00 37.35 3.36
1742 1835 7.330946 GTGTTACAAGAACAGATATGTGCTACA 59.669 37.037 0.17 0.00 0.00 2.74
1743 1836 8.040727 TGTTACAAGAACAGATATGTGCTACAT 58.959 33.333 0.17 6.93 42.35 2.29
1744 1837 6.915544 ACAAGAACAGATATGTGCTACATG 57.084 37.500 0.17 0.00 39.53 3.21
1745 1838 6.643388 ACAAGAACAGATATGTGCTACATGA 58.357 36.000 0.17 0.00 39.53 3.07
1747 1840 8.424133 ACAAGAACAGATATGTGCTACATGATA 58.576 33.333 0.17 0.00 39.53 2.15
1748 1841 8.923683 CAAGAACAGATATGTGCTACATGATAG 58.076 37.037 0.17 0.00 39.53 2.08
1749 1842 8.187913 AGAACAGATATGTGCTACATGATAGT 57.812 34.615 0.00 3.96 39.53 2.12
1750 1843 8.087136 AGAACAGATATGTGCTACATGATAGTG 58.913 37.037 0.00 5.37 39.53 2.74
1751 1844 7.295322 ACAGATATGTGCTACATGATAGTGT 57.705 36.000 0.00 5.82 39.53 3.55
1909 2101 6.707290 TCAGGTAACATGCTATTACACTTGT 58.293 36.000 6.93 0.00 41.41 3.16
1911 2103 7.979537 TCAGGTAACATGCTATTACACTTGTAG 59.020 37.037 6.93 0.00 41.41 2.74
1938 2130 8.412456 TGGTGATTACTTTGCATAACCAATATG 58.588 33.333 0.00 0.00 43.64 1.78
2003 2195 0.669625 GGTTCACGAGGTACCAGTGC 60.670 60.000 26.36 17.27 35.97 4.40
2013 2205 0.734253 GTACCAGTGCTGTGCTCTCG 60.734 60.000 0.00 0.00 29.56 4.04
2058 2250 0.603707 TGCAGTCTTCTTTGGAGGCG 60.604 55.000 0.00 0.00 0.00 5.52
2070 2262 1.139947 GGAGGCGAGTGCACTAGAC 59.860 63.158 28.45 26.28 45.35 2.59
2073 2265 0.457851 AGGCGAGTGCACTAGACATC 59.542 55.000 31.09 12.90 45.35 3.06
2157 2349 7.272515 ACGCATTTTAACATCAAGGTAATTTCG 59.727 33.333 0.00 0.00 0.00 3.46
2160 2352 3.757745 AACATCAAGGTAATTTCGCCG 57.242 42.857 0.00 0.00 0.00 6.46
2296 2488 6.708054 AGAGTCGGGATCATGAATGTAATTTC 59.292 38.462 0.00 0.00 36.07 2.17
2299 2491 8.210946 AGTCGGGATCATGAATGTAATTTCTTA 58.789 33.333 0.00 0.00 36.07 2.10
2342 2534 4.397103 TCCAGAATAAGTTGATTGCAGCAG 59.603 41.667 0.00 0.00 0.00 4.24
2343 2535 4.103357 CAGAATAAGTTGATTGCAGCAGC 58.897 43.478 0.00 0.00 42.57 5.25
2369 2561 2.172505 TGTAGCCATGAATCGGATGGTT 59.827 45.455 0.00 0.00 42.25 3.67
2425 2619 3.733443 AAGACATTGTTGCCTTGGTTC 57.267 42.857 0.00 0.00 0.00 3.62
2479 2673 2.014128 CGGCCATGAACTTACGGAAAT 58.986 47.619 2.24 0.00 0.00 2.17
2487 2762 7.677747 GCCATGAACTTACGGAAATTTATCGAA 60.678 37.037 16.88 8.35 0.00 3.71
2510 2785 7.910683 CGAATACAAATTTCTCTTCCTTTAGCC 59.089 37.037 0.00 0.00 0.00 3.93
2511 2786 8.650143 AATACAAATTTCTCTTCCTTTAGCCA 57.350 30.769 0.00 0.00 0.00 4.75
2512 2787 6.332735 ACAAATTTCTCTTCCTTTAGCCAC 57.667 37.500 0.00 0.00 0.00 5.01
2513 2788 5.243954 ACAAATTTCTCTTCCTTTAGCCACC 59.756 40.000 0.00 0.00 0.00 4.61
2515 2790 4.657814 TTTCTCTTCCTTTAGCCACCAT 57.342 40.909 0.00 0.00 0.00 3.55
2516 2791 3.634397 TCTCTTCCTTTAGCCACCATG 57.366 47.619 0.00 0.00 0.00 3.66
2517 2792 2.019984 CTCTTCCTTTAGCCACCATGC 58.980 52.381 0.00 0.00 0.00 4.06
2518 2793 1.635487 TCTTCCTTTAGCCACCATGCT 59.365 47.619 0.00 0.00 45.38 3.79
2531 2806 2.932855 CCATGCTGGTCAGATGAGAT 57.067 50.000 1.65 0.00 31.35 2.75
2532 2807 3.210232 CCATGCTGGTCAGATGAGATT 57.790 47.619 1.65 0.00 31.35 2.40
2533 2808 3.552875 CCATGCTGGTCAGATGAGATTT 58.447 45.455 1.65 0.00 31.35 2.17
2534 2809 3.952323 CCATGCTGGTCAGATGAGATTTT 59.048 43.478 1.65 0.00 31.35 1.82
2535 2810 4.036498 CCATGCTGGTCAGATGAGATTTTC 59.964 45.833 1.65 0.00 31.35 2.29
2536 2811 3.264947 TGCTGGTCAGATGAGATTTTCG 58.735 45.455 1.65 0.00 0.00 3.46
2537 2812 3.055891 TGCTGGTCAGATGAGATTTTCGA 60.056 43.478 1.65 0.00 0.00 3.71
2538 2813 4.125703 GCTGGTCAGATGAGATTTTCGAT 58.874 43.478 1.65 0.00 0.00 3.59
2540 2815 5.176590 GCTGGTCAGATGAGATTTTCGATAC 59.823 44.000 1.65 0.00 0.00 2.24
2541 2816 5.601662 TGGTCAGATGAGATTTTCGATACC 58.398 41.667 0.00 0.00 0.00 2.73
2542 2817 5.128663 TGGTCAGATGAGATTTTCGATACCA 59.871 40.000 0.00 0.00 0.00 3.25
2543 2818 6.183361 TGGTCAGATGAGATTTTCGATACCAT 60.183 38.462 0.00 0.00 0.00 3.55
2546 2821 7.225538 GTCAGATGAGATTTTCGATACCATTGT 59.774 37.037 0.00 0.00 0.00 2.71
2549 2824 9.784531 AGATGAGATTTTCGATACCATTGTATT 57.215 29.630 0.00 0.00 37.80 1.89
2551 2826 8.731275 TGAGATTTTCGATACCATTGTATTGT 57.269 30.769 4.53 0.00 39.14 2.71
2552 2827 8.611757 TGAGATTTTCGATACCATTGTATTGTG 58.388 33.333 4.53 0.00 39.14 3.33
2553 2828 8.731275 AGATTTTCGATACCATTGTATTGTGA 57.269 30.769 4.53 0.00 39.14 3.58
2556 2831 6.656314 TTCGATACCATTGTATTGTGACAC 57.344 37.500 0.00 0.00 39.14 3.67
2557 2832 5.972935 TCGATACCATTGTATTGTGACACT 58.027 37.500 7.20 0.00 39.14 3.55
2572 2847 4.159321 TGTGACACTTTTGGAAGCATTTGA 59.841 37.500 7.20 0.00 36.29 2.69
2575 2850 6.922957 GTGACACTTTTGGAAGCATTTGATAA 59.077 34.615 0.00 0.00 36.29 1.75
2576 2851 7.599998 GTGACACTTTTGGAAGCATTTGATAAT 59.400 33.333 0.00 0.00 36.29 1.28
2577 2852 8.149647 TGACACTTTTGGAAGCATTTGATAATT 58.850 29.630 0.00 0.00 36.29 1.40
2578 2853 9.638239 GACACTTTTGGAAGCATTTGATAATTA 57.362 29.630 0.00 0.00 36.29 1.40
2636 2970 3.965780 GGTGAAGCCTTTGTGTTGG 57.034 52.632 0.00 0.00 0.00 3.77
2637 2971 1.111277 GGTGAAGCCTTTGTGTTGGT 58.889 50.000 0.00 0.00 0.00 3.67
2638 2972 1.202405 GGTGAAGCCTTTGTGTTGGTG 60.202 52.381 0.00 0.00 0.00 4.17
2639 2973 1.748493 GTGAAGCCTTTGTGTTGGTGA 59.252 47.619 0.00 0.00 0.00 4.02
2640 2974 2.165437 GTGAAGCCTTTGTGTTGGTGAA 59.835 45.455 0.00 0.00 0.00 3.18
2641 2975 2.828520 TGAAGCCTTTGTGTTGGTGAAA 59.171 40.909 0.00 0.00 0.00 2.69
2642 2976 3.259374 TGAAGCCTTTGTGTTGGTGAAAA 59.741 39.130 0.00 0.00 0.00 2.29
2643 2977 3.971245 AGCCTTTGTGTTGGTGAAAAA 57.029 38.095 0.00 0.00 0.00 1.94
2644 2978 3.595173 AGCCTTTGTGTTGGTGAAAAAC 58.405 40.909 0.00 0.00 0.00 2.43
2645 2979 2.347150 GCCTTTGTGTTGGTGAAAAACG 59.653 45.455 0.00 0.00 0.00 3.60
2646 2980 2.926838 CCTTTGTGTTGGTGAAAAACGG 59.073 45.455 0.00 0.00 0.00 4.44
2647 2981 2.656560 TTGTGTTGGTGAAAAACGGG 57.343 45.000 0.00 0.00 0.00 5.28
2648 2982 0.818296 TGTGTTGGTGAAAAACGGGG 59.182 50.000 0.00 0.00 0.00 5.73
2649 2983 1.104630 GTGTTGGTGAAAAACGGGGA 58.895 50.000 0.00 0.00 0.00 4.81
2650 2984 1.684450 GTGTTGGTGAAAAACGGGGAT 59.316 47.619 0.00 0.00 0.00 3.85
2651 2985 1.957877 TGTTGGTGAAAAACGGGGATC 59.042 47.619 0.00 0.00 0.00 3.36
2652 2986 1.957877 GTTGGTGAAAAACGGGGATCA 59.042 47.619 0.00 0.00 0.00 2.92
2653 2987 1.904287 TGGTGAAAAACGGGGATCAG 58.096 50.000 0.00 0.00 0.00 2.90
2654 2988 0.526211 GGTGAAAAACGGGGATCAGC 59.474 55.000 0.00 0.00 33.77 4.26
2655 2989 1.243902 GTGAAAAACGGGGATCAGCA 58.756 50.000 0.00 0.00 0.00 4.41
2656 2990 1.068541 GTGAAAAACGGGGATCAGCAC 60.069 52.381 0.00 0.00 0.00 4.40
2657 2991 1.202879 TGAAAAACGGGGATCAGCACT 60.203 47.619 0.00 0.00 0.00 4.40
2658 2992 1.886542 GAAAAACGGGGATCAGCACTT 59.113 47.619 0.00 0.00 0.00 3.16
2659 2993 1.995376 AAAACGGGGATCAGCACTTT 58.005 45.000 0.00 0.00 0.00 2.66
2660 2994 1.995376 AAACGGGGATCAGCACTTTT 58.005 45.000 0.00 0.00 0.00 2.27
2661 2995 1.995376 AACGGGGATCAGCACTTTTT 58.005 45.000 0.00 0.00 0.00 1.94
2686 3020 3.426292 GGATACAGGCGAAAACTTTGCTC 60.426 47.826 0.00 0.00 0.00 4.26
2690 3024 0.028902 GGCGAAAACTTTGCTCGTGT 59.971 50.000 0.00 0.00 35.06 4.49
2702 3036 9.811995 AAACTTTGCTCGTGTATATAAGATGTA 57.188 29.630 0.00 0.00 0.00 2.29
2703 3037 8.798748 ACTTTGCTCGTGTATATAAGATGTAC 57.201 34.615 0.00 0.00 0.00 2.90
2704 3038 8.630917 ACTTTGCTCGTGTATATAAGATGTACT 58.369 33.333 0.00 0.00 0.00 2.73
2705 3039 9.119329 CTTTGCTCGTGTATATAAGATGTACTC 57.881 37.037 0.00 0.00 0.00 2.59
2706 3040 7.142306 TGCTCGTGTATATAAGATGTACTCC 57.858 40.000 0.00 0.00 0.00 3.85
2707 3041 6.150641 TGCTCGTGTATATAAGATGTACTCCC 59.849 42.308 0.00 0.00 0.00 4.30
2708 3042 6.374894 GCTCGTGTATATAAGATGTACTCCCT 59.625 42.308 0.00 0.00 0.00 4.20
2709 3043 7.414319 GCTCGTGTATATAAGATGTACTCCCTC 60.414 44.444 0.00 0.00 0.00 4.30
2710 3044 6.883217 TCGTGTATATAAGATGTACTCCCTCC 59.117 42.308 0.00 0.00 0.00 4.30
2711 3045 6.183360 CGTGTATATAAGATGTACTCCCTCCG 60.183 46.154 0.00 0.00 0.00 4.63
2712 3046 6.658391 GTGTATATAAGATGTACTCCCTCCGT 59.342 42.308 0.00 0.00 0.00 4.69
2713 3047 7.176340 GTGTATATAAGATGTACTCCCTCCGTT 59.824 40.741 0.00 0.00 0.00 4.44
2714 3048 6.837471 ATATAAGATGTACTCCCTCCGTTC 57.163 41.667 0.00 0.00 0.00 3.95
2715 3049 1.777941 AGATGTACTCCCTCCGTTCC 58.222 55.000 0.00 0.00 0.00 3.62
2716 3050 1.006758 AGATGTACTCCCTCCGTTCCA 59.993 52.381 0.00 0.00 0.00 3.53
2717 3051 2.040178 GATGTACTCCCTCCGTTCCAT 58.960 52.381 0.00 0.00 0.00 3.41
2718 3052 2.832643 TGTACTCCCTCCGTTCCATA 57.167 50.000 0.00 0.00 0.00 2.74
2719 3053 3.104519 TGTACTCCCTCCGTTCCATAA 57.895 47.619 0.00 0.00 0.00 1.90
2720 3054 3.649843 TGTACTCCCTCCGTTCCATAAT 58.350 45.455 0.00 0.00 0.00 1.28
2721 3055 4.806892 TGTACTCCCTCCGTTCCATAATA 58.193 43.478 0.00 0.00 0.00 0.98
2722 3056 4.586001 TGTACTCCCTCCGTTCCATAATAC 59.414 45.833 0.00 0.00 0.00 1.89
2723 3057 3.649843 ACTCCCTCCGTTCCATAATACA 58.350 45.455 0.00 0.00 0.00 2.29
2724 3058 4.232091 ACTCCCTCCGTTCCATAATACAT 58.768 43.478 0.00 0.00 0.00 2.29
2725 3059 4.040461 ACTCCCTCCGTTCCATAATACATG 59.960 45.833 0.00 0.00 0.00 3.21
2726 3060 3.074412 CCCTCCGTTCCATAATACATGC 58.926 50.000 0.00 0.00 0.00 4.06
2727 3061 3.074412 CCTCCGTTCCATAATACATGCC 58.926 50.000 0.00 0.00 0.00 4.40
2728 3062 3.244561 CCTCCGTTCCATAATACATGCCT 60.245 47.826 0.00 0.00 0.00 4.75
2729 3063 4.389374 CTCCGTTCCATAATACATGCCTT 58.611 43.478 0.00 0.00 0.00 4.35
2730 3064 4.385825 TCCGTTCCATAATACATGCCTTC 58.614 43.478 0.00 0.00 0.00 3.46
2731 3065 3.186409 CCGTTCCATAATACATGCCTTCG 59.814 47.826 0.00 0.00 0.00 3.79
2732 3066 4.055360 CGTTCCATAATACATGCCTTCGA 58.945 43.478 0.00 0.00 0.00 3.71
2733 3067 4.690748 CGTTCCATAATACATGCCTTCGAT 59.309 41.667 0.00 0.00 0.00 3.59
2734 3068 5.179368 CGTTCCATAATACATGCCTTCGATT 59.821 40.000 0.00 0.00 0.00 3.34
2735 3069 6.293407 CGTTCCATAATACATGCCTTCGATTT 60.293 38.462 0.00 0.00 0.00 2.17
2736 3070 6.558771 TCCATAATACATGCCTTCGATTTG 57.441 37.500 0.00 0.00 0.00 2.32
2737 3071 6.061441 TCCATAATACATGCCTTCGATTTGT 58.939 36.000 0.00 0.00 0.00 2.83
2738 3072 6.204688 TCCATAATACATGCCTTCGATTTGTC 59.795 38.462 0.00 0.00 0.00 3.18
2739 3073 6.017192 CCATAATACATGCCTTCGATTTGTCA 60.017 38.462 0.00 0.00 0.00 3.58
2740 3074 5.895636 AATACATGCCTTCGATTTGTCAA 57.104 34.783 0.00 0.00 0.00 3.18
2741 3075 5.895636 ATACATGCCTTCGATTTGTCAAA 57.104 34.783 0.00 0.00 0.00 2.69
2742 3076 4.582701 ACATGCCTTCGATTTGTCAAAA 57.417 36.364 1.31 0.00 0.00 2.44
2743 3077 5.138125 ACATGCCTTCGATTTGTCAAAAT 57.862 34.783 1.31 0.00 38.74 1.82
2744 3078 6.266168 ACATGCCTTCGATTTGTCAAAATA 57.734 33.333 1.31 0.00 36.10 1.40
2745 3079 6.866480 ACATGCCTTCGATTTGTCAAAATAT 58.134 32.000 1.31 0.00 36.10 1.28
2746 3080 7.995289 ACATGCCTTCGATTTGTCAAAATATA 58.005 30.769 1.31 0.00 36.10 0.86
2747 3081 8.131100 ACATGCCTTCGATTTGTCAAAATATAG 58.869 33.333 1.31 0.00 36.10 1.31
2748 3082 7.857734 TGCCTTCGATTTGTCAAAATATAGA 57.142 32.000 1.31 0.00 36.10 1.98
2749 3083 8.450578 TGCCTTCGATTTGTCAAAATATAGAT 57.549 30.769 1.31 0.00 36.10 1.98
2750 3084 8.344831 TGCCTTCGATTTGTCAAAATATAGATG 58.655 33.333 1.31 1.42 36.10 2.90
2751 3085 8.345565 GCCTTCGATTTGTCAAAATATAGATGT 58.654 33.333 1.31 0.00 36.10 3.06
2822 3156 9.717942 ATGGAAATCAAATATTTTGAAACGGAA 57.282 25.926 6.75 0.00 31.55 4.30
2823 3157 9.202273 TGGAAATCAAATATTTTGAAACGGAAG 57.798 29.630 6.75 0.00 31.55 3.46
2824 3158 8.655970 GGAAATCAAATATTTTGAAACGGAAGG 58.344 33.333 6.75 0.00 31.55 3.46
2825 3159 9.418045 GAAATCAAATATTTTGAAACGGAAGGA 57.582 29.630 6.75 0.00 31.55 3.36
2826 3160 9.771534 AAATCAAATATTTTGAAACGGAAGGAA 57.228 25.926 6.75 0.00 31.55 3.36
2827 3161 8.986477 ATCAAATATTTTGAAACGGAAGGAAG 57.014 30.769 6.75 0.00 31.55 3.46
2828 3162 7.947282 TCAAATATTTTGAAACGGAAGGAAGT 58.053 30.769 0.00 0.00 0.00 3.01
2829 3163 9.069082 TCAAATATTTTGAAACGGAAGGAAGTA 57.931 29.630 0.00 0.00 0.00 2.24
2830 3164 9.124807 CAAATATTTTGAAACGGAAGGAAGTAC 57.875 33.333 0.00 0.00 0.00 2.73
2835 3169 7.804843 TTTGAAACGGAAGGAAGTACAATAA 57.195 32.000 0.00 0.00 0.00 1.40
2838 3172 6.993902 TGAAACGGAAGGAAGTACAATAAGTT 59.006 34.615 0.00 0.00 0.00 2.66
2843 3177 7.333672 ACGGAAGGAAGTACAATAAGTTTCATC 59.666 37.037 0.00 0.00 0.00 2.92
2845 3179 9.010029 GGAAGGAAGTACAATAAGTTTCATCAA 57.990 33.333 0.00 0.00 0.00 2.57
2846 3180 9.827411 GAAGGAAGTACAATAAGTTTCATCAAC 57.173 33.333 0.00 0.00 35.32 3.18
2864 3198 7.223584 TCATCAACCATGAAAGTGAGACTAAA 58.776 34.615 0.00 0.00 38.68 1.85
2865 3199 7.884877 TCATCAACCATGAAAGTGAGACTAAAT 59.115 33.333 0.00 0.00 38.68 1.40
2866 3200 7.439157 TCAACCATGAAAGTGAGACTAAATG 57.561 36.000 0.00 0.00 30.99 2.32
2870 3205 9.739276 AACCATGAAAGTGAGACTAAATGATTA 57.261 29.630 0.00 0.00 0.00 1.75
2905 3240 3.743521 AGTGTATTCTGACTGCAAAGCA 58.256 40.909 0.00 0.00 36.92 3.91
2912 3247 8.955388 TGTATTCTGACTGCAAAGCAAATATAA 58.045 29.630 0.00 0.00 38.41 0.98
2933 3268 5.376854 AATCGAAGCACAATTAGCAAAGT 57.623 34.783 0.00 0.00 0.00 2.66
2934 3269 4.145876 TCGAAGCACAATTAGCAAAGTG 57.854 40.909 5.04 0.00 36.75 3.16
2977 3312 3.006859 TCATGAATTGTCTGTCGTCCAGT 59.993 43.478 0.00 0.00 42.19 4.00
2978 3313 4.219725 TCATGAATTGTCTGTCGTCCAGTA 59.780 41.667 0.00 0.00 42.19 2.74
2994 3329 3.880490 TCCAGTACGCATTTTCTGTGTTT 59.120 39.130 0.00 0.00 46.34 2.83
3006 3341 7.569957 GCATTTTCTGTGTTTGATGGCTTAAAG 60.570 37.037 0.00 0.00 0.00 1.85
3032 3371 7.192232 GCTTAAGCATAATCAAAACTCTGGAG 58.808 38.462 22.59 0.00 41.59 3.86
3059 3398 4.693283 TCGAACTCTCAAGCTCTGAAAAA 58.307 39.130 0.00 0.00 32.17 1.94
3060 3399 5.300752 TCGAACTCTCAAGCTCTGAAAAAT 58.699 37.500 0.00 0.00 32.17 1.82
3062 3401 5.390356 CGAACTCTCAAGCTCTGAAAAATCC 60.390 44.000 0.00 0.00 32.17 3.01
3063 3402 4.331108 ACTCTCAAGCTCTGAAAAATCCC 58.669 43.478 0.00 0.00 32.17 3.85
3072 3411 3.303938 TCTGAAAAATCCCAGTTGGCAA 58.696 40.909 0.00 0.00 0.00 4.52
3075 3414 3.007831 TGAAAAATCCCAGTTGGCAATCC 59.992 43.478 1.92 0.00 0.00 3.01
3105 3444 1.668294 CCTCTCTCTGCCACAACGT 59.332 57.895 0.00 0.00 0.00 3.99
3106 3445 0.034059 CCTCTCTCTGCCACAACGTT 59.966 55.000 0.00 0.00 0.00 3.99
3107 3446 1.272490 CCTCTCTCTGCCACAACGTTA 59.728 52.381 0.00 0.00 0.00 3.18
3108 3447 2.093973 CCTCTCTCTGCCACAACGTTAT 60.094 50.000 0.00 0.00 0.00 1.89
3109 3448 3.182967 CTCTCTCTGCCACAACGTTATC 58.817 50.000 0.00 0.00 0.00 1.75
3110 3449 1.920574 CTCTCTGCCACAACGTTATCG 59.079 52.381 0.00 0.00 43.34 2.92
3114 3453 1.127951 CTGCCACAACGTTATCGGTTC 59.872 52.381 0.00 0.00 41.85 3.62
3122 3461 0.822164 CGTTATCGGTTCAGGAGGGT 59.178 55.000 0.00 0.00 0.00 4.34
3138 3477 3.191182 GGTATGTCCCCAGGCTTTG 57.809 57.895 0.00 0.00 0.00 2.77
3139 3478 1.037579 GGTATGTCCCCAGGCTTTGC 61.038 60.000 0.00 0.00 0.00 3.68
3177 3516 1.135024 CACACAGTGCTTTTGGTTGCT 60.135 47.619 0.00 0.00 0.00 3.91
3179 3518 2.099098 ACACAGTGCTTTTGGTTGCTAC 59.901 45.455 0.00 0.00 0.00 3.58
3180 3519 2.358898 CACAGTGCTTTTGGTTGCTACT 59.641 45.455 0.00 0.00 0.00 2.57
3194 3533 3.423539 TGCTACTTGCTGGAGAAACAT 57.576 42.857 0.00 0.00 43.37 2.71
3199 3538 4.307032 ACTTGCTGGAGAAACATACCAT 57.693 40.909 0.00 0.00 33.08 3.55
3298 3692 0.473755 TCCAAAGGAACTGCTGAGCA 59.526 50.000 7.05 7.05 40.86 4.26
3303 3697 1.889545 AGGAACTGCTGAGCAAGTTC 58.110 50.000 26.83 26.83 41.34 3.01
3346 3740 2.228582 CTGGATTTGTGTCGCATTTGGA 59.771 45.455 0.00 0.00 0.00 3.53
3350 3744 3.998099 TTTGTGTCGCATTTGGATTGA 57.002 38.095 0.00 0.00 0.00 2.57
3389 3784 3.942377 ATTGGCACGCATCAGGGCA 62.942 57.895 0.00 0.00 43.62 5.36
3398 3793 1.137479 CGCATCAGGGCAAAATGGATT 59.863 47.619 0.00 0.00 0.00 3.01
3411 3806 5.702209 GCAAAATGGATTGAAGGATTGTGTT 59.298 36.000 0.00 0.00 31.84 3.32
3417 3812 4.380233 GGATTGAAGGATTGTGTTGCTGAG 60.380 45.833 0.00 0.00 0.00 3.35
3423 3818 4.260170 AGGATTGTGTTGCTGAGAAGATC 58.740 43.478 0.00 0.00 0.00 2.75
3438 3833 5.300034 TGAGAAGATCAAAAACATGTGCACT 59.700 36.000 19.41 0.15 34.02 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 138 3.190849 CACCAGCGTCTGCATCCG 61.191 66.667 0.00 0.00 46.23 4.18
151 169 3.576356 GACGGACGGGCATGCATG 61.576 66.667 22.70 22.70 0.00 4.06
170 188 2.126424 GTGACACGGCGAGAGGAC 60.126 66.667 16.62 1.47 0.00 3.85
171 189 2.596338 TGTGACACGGCGAGAGGA 60.596 61.111 16.62 0.00 0.00 3.71
172 190 2.126307 CTGTGACACGGCGAGAGG 60.126 66.667 16.62 2.12 0.00 3.69
173 191 2.126307 CCTGTGACACGGCGAGAG 60.126 66.667 16.62 5.45 0.00 3.20
257 275 4.860261 CGCGTGGTAGTACCGCCC 62.860 72.222 24.01 15.96 45.71 6.13
259 277 4.781959 TGCGCGTGGTAGTACCGC 62.782 66.667 21.00 21.00 45.04 5.68
367 400 2.807392 GACGGAAGGATAGTACGGAGAG 59.193 54.545 0.00 0.00 0.00 3.20
368 401 2.804572 CGACGGAAGGATAGTACGGAGA 60.805 54.545 0.00 0.00 0.00 3.71
369 402 1.530293 CGACGGAAGGATAGTACGGAG 59.470 57.143 0.00 0.00 0.00 4.63
370 403 1.586422 CGACGGAAGGATAGTACGGA 58.414 55.000 0.00 0.00 0.00 4.69
371 404 0.590195 CCGACGGAAGGATAGTACGG 59.410 60.000 8.64 0.00 0.00 4.02
376 409 0.102481 CACCACCGACGGAAGGATAG 59.898 60.000 28.29 16.98 0.00 2.08
380 413 4.308458 TGCACCACCGACGGAAGG 62.308 66.667 23.38 22.89 0.00 3.46
447 487 1.612462 GGAGAACCAAAAGGTACGGGG 60.612 57.143 0.00 0.00 35.97 5.73
508 548 1.811645 GAGCTGACGGCCTATCTCCC 61.812 65.000 0.00 0.00 43.05 4.30
509 549 1.663173 GAGCTGACGGCCTATCTCC 59.337 63.158 0.00 0.00 43.05 3.71
510 550 1.284408 CGAGCTGACGGCCTATCTC 59.716 63.158 0.00 0.00 43.05 2.75
613 677 0.476771 ACGGCTTTTCAGGGGAGAAA 59.523 50.000 0.00 0.00 35.82 2.52
674 738 7.181125 ACTGGGTCTATAAATTTGACTGAGAGT 59.819 37.037 0.00 0.00 0.00 3.24
679 743 9.319143 CTTCTACTGGGTCTATAAATTTGACTG 57.681 37.037 0.00 0.00 0.00 3.51
803 873 1.743321 TTTTTGCGGGGTTCCAGCTG 61.743 55.000 6.78 6.78 34.97 4.24
805 875 3.133946 TTTTTGCGGGGTTCCAGC 58.866 55.556 2.19 2.19 34.66 4.85
824 894 9.914131 GATTTTATTTAGTTCCAGCTGAGTTTT 57.086 29.630 17.39 0.00 0.00 2.43
825 895 9.301897 AGATTTTATTTAGTTCCAGCTGAGTTT 57.698 29.630 17.39 0.35 0.00 2.66
826 896 8.870075 AGATTTTATTTAGTTCCAGCTGAGTT 57.130 30.769 17.39 0.00 0.00 3.01
829 899 9.905713 ACATAGATTTTATTTAGTTCCAGCTGA 57.094 29.630 17.39 0.00 0.00 4.26
849 919 7.715686 ACTTCAGACTATATGTCGTCACATAGA 59.284 37.037 13.68 3.67 46.52 1.98
869 939 3.248363 TCGTGATTGCAGACAAACTTCAG 59.752 43.478 0.00 0.00 39.77 3.02
870 940 3.202097 TCGTGATTGCAGACAAACTTCA 58.798 40.909 0.00 0.00 39.77 3.02
871 941 3.878086 TCGTGATTGCAGACAAACTTC 57.122 42.857 0.00 0.00 39.77 3.01
879 949 1.741401 CCCGCTTCGTGATTGCAGA 60.741 57.895 0.00 0.00 0.00 4.26
883 953 1.502231 CTATCCCCGCTTCGTGATTG 58.498 55.000 0.00 0.00 0.00 2.67
890 960 0.466124 AACTGAGCTATCCCCGCTTC 59.534 55.000 0.00 0.00 37.96 3.86
1023 1094 5.495640 AGAGGAAAGCAGAGGAACAATTAG 58.504 41.667 0.00 0.00 0.00 1.73
1024 1095 5.505181 AGAGGAAAGCAGAGGAACAATTA 57.495 39.130 0.00 0.00 0.00 1.40
1025 1096 4.379302 AGAGGAAAGCAGAGGAACAATT 57.621 40.909 0.00 0.00 0.00 2.32
1044 1115 1.618447 GGCTTAGGGGTGGGGAAGA 60.618 63.158 0.00 0.00 0.00 2.87
1109 1180 1.719780 GAACTTACGTCGTTGCTGGAG 59.280 52.381 1.78 0.00 0.00 3.86
1131 1202 8.703336 CAGTAATAAGCAAAGAAAAGAAAAGGC 58.297 33.333 0.00 0.00 0.00 4.35
1185 1263 5.813080 AGATTAACTGGCGGTACAAAATC 57.187 39.130 0.00 7.42 0.00 2.17
1212 1290 8.215050 CGAGTCCTATATCTAGGTAATGGAGAT 58.785 40.741 7.40 1.58 44.40 2.75
1213 1291 7.402361 TCGAGTCCTATATCTAGGTAATGGAGA 59.598 40.741 7.40 1.29 44.40 3.71
1224 1302 6.309389 TGCTATGGTCGAGTCCTATATCTA 57.691 41.667 0.00 0.00 0.00 1.98
1226 1304 5.393243 GGTTGCTATGGTCGAGTCCTATATC 60.393 48.000 0.00 0.00 0.00 1.63
1228 1306 3.825014 GGTTGCTATGGTCGAGTCCTATA 59.175 47.826 0.00 0.00 0.00 1.31
1230 1308 2.029623 GGTTGCTATGGTCGAGTCCTA 58.970 52.381 0.00 0.00 0.00 2.94
1231 1309 0.824759 GGTTGCTATGGTCGAGTCCT 59.175 55.000 0.00 0.00 0.00 3.85
1234 1312 2.032620 CTAGGGTTGCTATGGTCGAGT 58.967 52.381 0.00 0.00 0.00 4.18
1235 1313 2.307768 TCTAGGGTTGCTATGGTCGAG 58.692 52.381 0.00 0.00 0.00 4.04
1236 1314 2.429610 GTTCTAGGGTTGCTATGGTCGA 59.570 50.000 0.00 0.00 0.00 4.20
1237 1315 2.483188 GGTTCTAGGGTTGCTATGGTCG 60.483 54.545 0.00 0.00 0.00 4.79
1239 1317 2.846950 AGGTTCTAGGGTTGCTATGGT 58.153 47.619 0.00 0.00 0.00 3.55
1272 1350 0.919981 GATCTGACGAGAAGCTTGCG 59.080 55.000 2.10 10.41 0.00 4.85
1309 1387 4.628333 TGTTAGTGAAATTAGTAGGCACGC 59.372 41.667 0.00 0.00 34.82 5.34
1311 1389 6.403878 TCCTGTTAGTGAAATTAGTAGGCAC 58.596 40.000 0.00 0.00 0.00 5.01
1349 1427 3.054655 AGGCGGAAAATACTAGCAAGGAA 60.055 43.478 0.00 0.00 0.00 3.36
1353 1431 3.620427 TGAGGCGGAAAATACTAGCAA 57.380 42.857 0.00 0.00 0.00 3.91
1355 1433 4.212214 CAGATTGAGGCGGAAAATACTAGC 59.788 45.833 0.00 0.00 0.00 3.42
1356 1434 4.212214 GCAGATTGAGGCGGAAAATACTAG 59.788 45.833 0.00 0.00 0.00 2.57
1368 1446 3.267860 CGAGGCGCAGATTGAGGC 61.268 66.667 10.83 0.00 42.72 4.70
1369 1447 2.169789 CACGAGGCGCAGATTGAGG 61.170 63.158 10.83 0.00 0.00 3.86
1370 1448 1.446792 ACACGAGGCGCAGATTGAG 60.447 57.895 10.83 0.00 0.00 3.02
1371 1449 1.737735 CACACGAGGCGCAGATTGA 60.738 57.895 10.83 0.00 0.00 2.57
1372 1450 1.086067 ATCACACGAGGCGCAGATTG 61.086 55.000 10.83 2.92 0.00 2.67
1373 1451 0.807667 GATCACACGAGGCGCAGATT 60.808 55.000 10.83 0.00 0.00 2.40
1374 1452 1.227089 GATCACACGAGGCGCAGAT 60.227 57.895 10.83 0.00 0.00 2.90
1375 1453 2.181777 GATCACACGAGGCGCAGA 59.818 61.111 10.83 0.00 0.00 4.26
1376 1454 2.887568 GGATCACACGAGGCGCAG 60.888 66.667 10.83 1.82 0.00 5.18
1377 1455 2.906182 GATGGATCACACGAGGCGCA 62.906 60.000 10.83 0.00 0.00 6.09
1378 1456 2.202932 ATGGATCACACGAGGCGC 60.203 61.111 0.00 0.00 0.00 6.53
1430 1517 3.317711 TGCAATCCGACACAAAATCTGTT 59.682 39.130 0.00 0.00 35.47 3.16
1431 1518 2.884012 TGCAATCCGACACAAAATCTGT 59.116 40.909 0.00 0.00 39.56 3.41
1432 1519 3.557577 TGCAATCCGACACAAAATCTG 57.442 42.857 0.00 0.00 0.00 2.90
1433 1520 3.758023 TGATGCAATCCGACACAAAATCT 59.242 39.130 0.00 0.00 44.73 2.40
1434 1521 4.095410 TGATGCAATCCGACACAAAATC 57.905 40.909 0.00 0.00 44.73 2.17
1435 1522 4.400251 AGATGATGCAATCCGACACAAAAT 59.600 37.500 0.00 0.00 44.73 1.82
1439 1526 2.696989 AGATGATGCAATCCGACACA 57.303 45.000 0.00 0.00 44.73 3.72
1440 1527 3.062763 CCTAGATGATGCAATCCGACAC 58.937 50.000 0.00 0.00 44.73 3.67
1442 1529 3.393089 ACCTAGATGATGCAATCCGAC 57.607 47.619 0.00 0.00 44.73 4.79
1443 1530 4.422073 AAACCTAGATGATGCAATCCGA 57.578 40.909 0.00 0.00 44.73 4.55
1444 1531 4.576053 TCAAAACCTAGATGATGCAATCCG 59.424 41.667 0.00 0.00 44.73 4.18
1445 1532 6.645790 ATCAAAACCTAGATGATGCAATCC 57.354 37.500 0.00 0.00 44.73 3.01
1446 1533 8.814235 CAAAATCAAAACCTAGATGATGCAATC 58.186 33.333 0.00 0.00 45.83 2.67
1450 1537 7.542025 AGACAAAATCAAAACCTAGATGATGC 58.458 34.615 0.00 0.00 34.21 3.91
1451 1538 8.186821 GGAGACAAAATCAAAACCTAGATGATG 58.813 37.037 0.00 0.00 34.21 3.07
1454 1541 6.371548 TCGGAGACAAAATCAAAACCTAGATG 59.628 38.462 0.00 0.00 0.00 2.90
1502 1595 8.100791 GTGAATTGTAAGCCCCAGATATACATA 58.899 37.037 0.00 0.00 0.00 2.29
1503 1596 6.942576 GTGAATTGTAAGCCCCAGATATACAT 59.057 38.462 0.00 0.00 0.00 2.29
1504 1597 6.296026 GTGAATTGTAAGCCCCAGATATACA 58.704 40.000 0.00 0.00 0.00 2.29
1505 1598 5.408604 CGTGAATTGTAAGCCCCAGATATAC 59.591 44.000 0.00 0.00 0.00 1.47
1506 1599 5.305902 TCGTGAATTGTAAGCCCCAGATATA 59.694 40.000 0.00 0.00 0.00 0.86
1507 1600 4.102524 TCGTGAATTGTAAGCCCCAGATAT 59.897 41.667 0.00 0.00 0.00 1.63
1524 1617 3.985279 CGTGTTTCCTTCTATGTCGTGAA 59.015 43.478 0.00 0.00 0.00 3.18
1579 1672 3.250744 TCGATCGAAAACAGCCTAACAG 58.749 45.455 16.99 0.00 0.00 3.16
1606 1699 8.042515 CCTTGATTGACAAAATTACCATCCAAT 58.957 33.333 0.00 0.00 38.08 3.16
1888 2074 7.011109 CCACTACAAGTGTAATAGCATGTTACC 59.989 40.741 6.33 0.00 44.50 2.85
1909 2101 6.477253 TGGTTATGCAAAGTAATCACCACTA 58.523 36.000 0.00 0.00 27.58 2.74
1911 2103 5.637006 TGGTTATGCAAAGTAATCACCAC 57.363 39.130 0.00 0.00 27.58 4.16
1938 2130 4.517075 AGAGCAACTGCCTAAAAGAAGAAC 59.483 41.667 0.00 0.00 43.38 3.01
2013 2205 1.227205 CCTCATCCGTGCAGCTCTC 60.227 63.158 0.00 0.00 0.00 3.20
2047 2239 1.301716 GTGCACTCGCCTCCAAAGA 60.302 57.895 10.32 0.00 37.32 2.52
2058 2250 3.766676 TCTTCGATGTCTAGTGCACTC 57.233 47.619 25.56 10.11 0.00 3.51
2070 2262 6.480524 TGTTGGTAAGAAACATCTTCGATG 57.519 37.500 2.49 2.49 32.71 3.84
2073 2265 5.088739 GCATGTTGGTAAGAAACATCTTCG 58.911 41.667 0.00 0.00 44.43 3.79
2157 2349 0.889186 TCTGCCCTTCAAACTTCGGC 60.889 55.000 0.00 0.00 40.16 5.54
2160 2352 0.884514 GGCTCTGCCCTTCAAACTTC 59.115 55.000 0.00 0.00 44.06 3.01
2296 2488 8.286800 TGGAACAAACATTAATCGAGTTGTAAG 58.713 33.333 0.00 0.00 31.92 2.34
2299 2491 6.485313 TCTGGAACAAACATTAATCGAGTTGT 59.515 34.615 0.00 0.00 38.70 3.32
2301 2493 7.504924 TTCTGGAACAAACATTAATCGAGTT 57.495 32.000 0.00 0.00 38.70 3.01
2356 2548 6.582677 AACATTGTTTAACCATCCGATTCA 57.417 33.333 0.00 0.00 0.00 2.57
2364 2556 5.816777 GCATGCCATAACATTGTTTAACCAT 59.183 36.000 6.36 3.96 0.00 3.55
2369 2561 9.258826 GAAATATGCATGCCATAACATTGTTTA 57.741 29.630 16.68 0.00 39.71 2.01
2425 2619 6.245115 TGCACATAGAGAAATTCACACTTG 57.755 37.500 0.00 0.00 0.00 3.16
2487 2762 7.122799 GGTGGCTAAAGGAAGAGAAATTTGTAT 59.877 37.037 0.00 0.00 0.00 2.29
2501 2776 3.575506 CAGCATGGTGGCTAAAGGA 57.424 52.632 17.24 0.00 43.68 3.36
2513 2788 4.260661 CGAAAATCTCATCTGACCAGCATG 60.261 45.833 0.00 0.00 0.00 4.06
2515 2790 3.055891 TCGAAAATCTCATCTGACCAGCA 60.056 43.478 0.00 0.00 0.00 4.41
2516 2791 3.525537 TCGAAAATCTCATCTGACCAGC 58.474 45.455 0.00 0.00 0.00 4.85
2517 2792 5.694006 GGTATCGAAAATCTCATCTGACCAG 59.306 44.000 0.00 0.00 0.00 4.00
2518 2793 5.128663 TGGTATCGAAAATCTCATCTGACCA 59.871 40.000 0.00 0.00 0.00 4.02
2521 2796 7.275183 ACAATGGTATCGAAAATCTCATCTGA 58.725 34.615 0.00 0.00 0.00 3.27
2522 2797 7.488187 ACAATGGTATCGAAAATCTCATCTG 57.512 36.000 0.00 0.00 0.00 2.90
2523 2798 9.784531 AATACAATGGTATCGAAAATCTCATCT 57.215 29.630 0.00 0.00 39.28 2.90
2526 2801 8.611757 CACAATACAATGGTATCGAAAATCTCA 58.388 33.333 0.00 0.00 39.28 3.27
2529 2804 8.394877 TGTCACAATACAATGGTATCGAAAATC 58.605 33.333 0.00 0.00 39.28 2.17
2531 2806 7.389330 AGTGTCACAATACAATGGTATCGAAAA 59.611 33.333 5.62 0.00 39.28 2.29
2532 2807 6.876789 AGTGTCACAATACAATGGTATCGAAA 59.123 34.615 5.62 0.00 39.28 3.46
2533 2808 6.403049 AGTGTCACAATACAATGGTATCGAA 58.597 36.000 5.62 0.00 39.28 3.71
2534 2809 5.972935 AGTGTCACAATACAATGGTATCGA 58.027 37.500 5.62 0.00 39.28 3.59
2535 2810 6.662414 AAGTGTCACAATACAATGGTATCG 57.338 37.500 5.62 0.00 39.28 2.92
2536 2811 7.754924 CCAAAAGTGTCACAATACAATGGTATC 59.245 37.037 5.62 0.00 39.28 2.24
2537 2812 7.450014 TCCAAAAGTGTCACAATACAATGGTAT 59.550 33.333 5.62 0.00 41.98 2.73
2538 2813 6.773200 TCCAAAAGTGTCACAATACAATGGTA 59.227 34.615 5.62 0.00 0.00 3.25
2540 2815 6.083098 TCCAAAAGTGTCACAATACAATGG 57.917 37.500 5.62 4.07 0.00 3.16
2541 2816 6.144402 GCTTCCAAAAGTGTCACAATACAATG 59.856 38.462 5.62 0.00 34.79 2.82
2542 2817 6.183360 TGCTTCCAAAAGTGTCACAATACAAT 60.183 34.615 5.62 0.00 34.79 2.71
2543 2818 5.126222 TGCTTCCAAAAGTGTCACAATACAA 59.874 36.000 5.62 0.00 34.79 2.41
2546 2821 6.403866 AATGCTTCCAAAAGTGTCACAATA 57.596 33.333 5.62 0.00 34.79 1.90
2549 2824 4.159321 TCAAATGCTTCCAAAAGTGTCACA 59.841 37.500 5.62 0.00 34.79 3.58
2551 2826 4.998671 TCAAATGCTTCCAAAAGTGTCA 57.001 36.364 0.00 0.00 34.79 3.58
2552 2827 8.538409 AATTATCAAATGCTTCCAAAAGTGTC 57.462 30.769 0.00 0.00 34.79 3.67
2619 2953 1.748493 TCACCAACACAAAGGCTTCAC 59.252 47.619 0.00 0.00 0.00 3.18
2628 2962 1.204941 CCCCGTTTTTCACCAACACAA 59.795 47.619 0.00 0.00 0.00 3.33
2629 2963 0.818296 CCCCGTTTTTCACCAACACA 59.182 50.000 0.00 0.00 0.00 3.72
2630 2964 1.104630 TCCCCGTTTTTCACCAACAC 58.895 50.000 0.00 0.00 0.00 3.32
2631 2965 1.957877 GATCCCCGTTTTTCACCAACA 59.042 47.619 0.00 0.00 0.00 3.33
2632 2966 1.957877 TGATCCCCGTTTTTCACCAAC 59.042 47.619 0.00 0.00 0.00 3.77
2633 2967 2.235016 CTGATCCCCGTTTTTCACCAA 58.765 47.619 0.00 0.00 0.00 3.67
2634 2968 1.904287 CTGATCCCCGTTTTTCACCA 58.096 50.000 0.00 0.00 0.00 4.17
2635 2969 0.526211 GCTGATCCCCGTTTTTCACC 59.474 55.000 0.00 0.00 0.00 4.02
2636 2970 1.068541 GTGCTGATCCCCGTTTTTCAC 60.069 52.381 0.00 0.00 0.00 3.18
2637 2971 1.202879 AGTGCTGATCCCCGTTTTTCA 60.203 47.619 0.00 0.00 0.00 2.69
2638 2972 1.534729 AGTGCTGATCCCCGTTTTTC 58.465 50.000 0.00 0.00 0.00 2.29
2639 2973 1.995376 AAGTGCTGATCCCCGTTTTT 58.005 45.000 0.00 0.00 0.00 1.94
2640 2974 1.995376 AAAGTGCTGATCCCCGTTTT 58.005 45.000 0.00 0.00 0.00 2.43
2641 2975 1.995376 AAAAGTGCTGATCCCCGTTT 58.005 45.000 0.00 0.00 0.00 3.60
2642 2976 1.995376 AAAAAGTGCTGATCCCCGTT 58.005 45.000 0.00 0.00 0.00 4.44
2643 2977 3.745723 AAAAAGTGCTGATCCCCGT 57.254 47.368 0.00 0.00 0.00 5.28
2659 2993 5.523438 AAGTTTTCGCCTGTATCCAAAAA 57.477 34.783 0.00 0.00 0.00 1.94
2660 2994 5.285651 CAAAGTTTTCGCCTGTATCCAAAA 58.714 37.500 0.00 0.00 0.00 2.44
2661 2995 4.794655 GCAAAGTTTTCGCCTGTATCCAAA 60.795 41.667 0.00 0.00 0.00 3.28
2662 2996 3.305064 GCAAAGTTTTCGCCTGTATCCAA 60.305 43.478 0.00 0.00 0.00 3.53
2663 2997 2.227865 GCAAAGTTTTCGCCTGTATCCA 59.772 45.455 0.00 0.00 0.00 3.41
2664 2998 2.488153 AGCAAAGTTTTCGCCTGTATCC 59.512 45.455 0.00 0.00 0.00 2.59
2665 2999 3.725010 CGAGCAAAGTTTTCGCCTGTATC 60.725 47.826 0.00 0.00 0.00 2.24
2666 3000 2.159627 CGAGCAAAGTTTTCGCCTGTAT 59.840 45.455 0.00 0.00 0.00 2.29
2667 3001 1.529438 CGAGCAAAGTTTTCGCCTGTA 59.471 47.619 0.00 0.00 0.00 2.74
2668 3002 0.307760 CGAGCAAAGTTTTCGCCTGT 59.692 50.000 0.00 0.00 0.00 4.00
2669 3003 0.307760 ACGAGCAAAGTTTTCGCCTG 59.692 50.000 9.13 0.00 37.84 4.85
2670 3004 0.307760 CACGAGCAAAGTTTTCGCCT 59.692 50.000 9.13 0.00 37.84 5.52
2671 3005 0.028902 ACACGAGCAAAGTTTTCGCC 59.971 50.000 9.13 0.00 37.84 5.54
2672 3006 2.656192 TACACGAGCAAAGTTTTCGC 57.344 45.000 9.13 0.23 37.84 4.70
2673 3007 7.891782 TCTTATATACACGAGCAAAGTTTTCG 58.108 34.615 7.90 7.90 40.02 3.46
2674 3008 9.638300 CATCTTATATACACGAGCAAAGTTTTC 57.362 33.333 0.00 0.00 0.00 2.29
2675 3009 9.162764 ACATCTTATATACACGAGCAAAGTTTT 57.837 29.630 0.00 0.00 0.00 2.43
2676 3010 8.718102 ACATCTTATATACACGAGCAAAGTTT 57.282 30.769 0.00 0.00 0.00 2.66
2677 3011 9.245962 GTACATCTTATATACACGAGCAAAGTT 57.754 33.333 0.00 0.00 0.00 2.66
2678 3012 8.630917 AGTACATCTTATATACACGAGCAAAGT 58.369 33.333 0.00 0.00 0.00 2.66
2679 3013 9.119329 GAGTACATCTTATATACACGAGCAAAG 57.881 37.037 0.00 0.00 0.00 2.77
2680 3014 8.080417 GGAGTACATCTTATATACACGAGCAAA 58.920 37.037 0.00 0.00 0.00 3.68
2681 3015 7.309012 GGGAGTACATCTTATATACACGAGCAA 60.309 40.741 0.00 0.00 0.00 3.91
2682 3016 6.150641 GGGAGTACATCTTATATACACGAGCA 59.849 42.308 0.00 0.00 0.00 4.26
2686 3020 6.183360 CGGAGGGAGTACATCTTATATACACG 60.183 46.154 0.00 0.00 0.00 4.49
2690 3024 6.888632 GGAACGGAGGGAGTACATCTTATATA 59.111 42.308 0.00 0.00 0.00 0.86
2702 3036 3.649843 TGTATTATGGAACGGAGGGAGT 58.350 45.455 0.00 0.00 0.00 3.85
2703 3037 4.569943 CATGTATTATGGAACGGAGGGAG 58.430 47.826 0.00 0.00 0.00 4.30
2704 3038 3.244422 GCATGTATTATGGAACGGAGGGA 60.244 47.826 0.00 0.00 0.00 4.20
2705 3039 3.074412 GCATGTATTATGGAACGGAGGG 58.926 50.000 0.00 0.00 0.00 4.30
2706 3040 3.074412 GGCATGTATTATGGAACGGAGG 58.926 50.000 0.00 0.00 0.00 4.30
2707 3041 4.008074 AGGCATGTATTATGGAACGGAG 57.992 45.455 0.00 0.00 0.00 4.63
2708 3042 4.385825 GAAGGCATGTATTATGGAACGGA 58.614 43.478 0.00 0.00 0.00 4.69
2709 3043 3.186409 CGAAGGCATGTATTATGGAACGG 59.814 47.826 0.00 0.00 0.00 4.44
2710 3044 4.055360 TCGAAGGCATGTATTATGGAACG 58.945 43.478 0.00 0.00 0.00 3.95
2711 3045 6.560253 AATCGAAGGCATGTATTATGGAAC 57.440 37.500 0.00 0.00 0.00 3.62
2712 3046 6.545666 ACAAATCGAAGGCATGTATTATGGAA 59.454 34.615 0.00 0.00 0.00 3.53
2713 3047 6.061441 ACAAATCGAAGGCATGTATTATGGA 58.939 36.000 0.00 0.00 0.00 3.41
2714 3048 6.017192 TGACAAATCGAAGGCATGTATTATGG 60.017 38.462 0.00 0.00 0.00 2.74
2715 3049 6.958255 TGACAAATCGAAGGCATGTATTATG 58.042 36.000 0.00 0.00 0.00 1.90
2716 3050 7.566760 TTGACAAATCGAAGGCATGTATTAT 57.433 32.000 0.00 0.00 0.00 1.28
2717 3051 6.993786 TTGACAAATCGAAGGCATGTATTA 57.006 33.333 0.00 0.00 0.00 0.98
2718 3052 5.895636 TTGACAAATCGAAGGCATGTATT 57.104 34.783 0.00 0.00 0.00 1.89
2719 3053 5.895636 TTTGACAAATCGAAGGCATGTAT 57.104 34.783 0.00 0.00 0.00 2.29
2720 3054 5.697473 TTTTGACAAATCGAAGGCATGTA 57.303 34.783 0.50 0.00 29.55 2.29
2721 3055 4.582701 TTTTGACAAATCGAAGGCATGT 57.417 36.364 0.50 0.00 29.55 3.21
2722 3056 8.344831 TCTATATTTTGACAAATCGAAGGCATG 58.655 33.333 0.50 0.00 34.29 4.06
2723 3057 8.450578 TCTATATTTTGACAAATCGAAGGCAT 57.549 30.769 0.50 0.00 34.29 4.40
2724 3058 7.857734 TCTATATTTTGACAAATCGAAGGCA 57.142 32.000 0.50 0.00 34.29 4.75
2725 3059 8.345565 ACATCTATATTTTGACAAATCGAAGGC 58.654 33.333 0.50 0.00 34.29 4.35
2796 3130 9.717942 TTCCGTTTCAAAATATTTGATTTCCAT 57.282 25.926 0.39 0.00 0.00 3.41
2797 3131 9.202273 CTTCCGTTTCAAAATATTTGATTTCCA 57.798 29.630 0.39 0.00 0.00 3.53
2798 3132 8.655970 CCTTCCGTTTCAAAATATTTGATTTCC 58.344 33.333 0.39 0.00 0.00 3.13
2799 3133 9.418045 TCCTTCCGTTTCAAAATATTTGATTTC 57.582 29.630 0.39 1.08 0.00 2.17
2800 3134 9.771534 TTCCTTCCGTTTCAAAATATTTGATTT 57.228 25.926 0.39 0.00 0.00 2.17
2801 3135 9.423061 CTTCCTTCCGTTTCAAAATATTTGATT 57.577 29.630 0.39 0.00 0.00 2.57
2802 3136 8.585018 ACTTCCTTCCGTTTCAAAATATTTGAT 58.415 29.630 0.39 0.00 0.00 2.57
2803 3137 7.947282 ACTTCCTTCCGTTTCAAAATATTTGA 58.053 30.769 0.39 1.57 0.00 2.69
2804 3138 9.124807 GTACTTCCTTCCGTTTCAAAATATTTG 57.875 33.333 0.39 0.00 0.00 2.32
2805 3139 8.852135 TGTACTTCCTTCCGTTTCAAAATATTT 58.148 29.630 0.00 0.00 0.00 1.40
2806 3140 8.398878 TGTACTTCCTTCCGTTTCAAAATATT 57.601 30.769 0.00 0.00 0.00 1.28
2807 3141 7.989416 TGTACTTCCTTCCGTTTCAAAATAT 57.011 32.000 0.00 0.00 0.00 1.28
2808 3142 7.804843 TTGTACTTCCTTCCGTTTCAAAATA 57.195 32.000 0.00 0.00 0.00 1.40
2809 3143 6.702716 TTGTACTTCCTTCCGTTTCAAAAT 57.297 33.333 0.00 0.00 0.00 1.82
2810 3144 6.702716 ATTGTACTTCCTTCCGTTTCAAAA 57.297 33.333 0.00 0.00 0.00 2.44
2811 3145 7.499895 ACTTATTGTACTTCCTTCCGTTTCAAA 59.500 33.333 0.00 0.00 0.00 2.69
2812 3146 6.993902 ACTTATTGTACTTCCTTCCGTTTCAA 59.006 34.615 0.00 0.00 0.00 2.69
2813 3147 6.527423 ACTTATTGTACTTCCTTCCGTTTCA 58.473 36.000 0.00 0.00 0.00 2.69
2814 3148 7.430992 AACTTATTGTACTTCCTTCCGTTTC 57.569 36.000 0.00 0.00 0.00 2.78
2815 3149 7.499895 TGAAACTTATTGTACTTCCTTCCGTTT 59.500 33.333 0.00 0.00 0.00 3.60
2816 3150 6.993902 TGAAACTTATTGTACTTCCTTCCGTT 59.006 34.615 0.00 0.00 0.00 4.44
2817 3151 6.527423 TGAAACTTATTGTACTTCCTTCCGT 58.473 36.000 0.00 0.00 0.00 4.69
2818 3152 7.333423 TGATGAAACTTATTGTACTTCCTTCCG 59.667 37.037 0.00 0.00 0.00 4.30
2819 3153 8.561738 TGATGAAACTTATTGTACTTCCTTCC 57.438 34.615 0.00 0.00 0.00 3.46
2820 3154 9.827411 GTTGATGAAACTTATTGTACTTCCTTC 57.173 33.333 0.00 0.00 35.75 3.46
2821 3155 8.793592 GGTTGATGAAACTTATTGTACTTCCTT 58.206 33.333 0.00 0.00 38.92 3.36
2822 3156 7.942341 TGGTTGATGAAACTTATTGTACTTCCT 59.058 33.333 0.00 0.00 38.92 3.36
2823 3157 8.106247 TGGTTGATGAAACTTATTGTACTTCC 57.894 34.615 0.00 0.00 38.92 3.46
2824 3158 9.559958 CATGGTTGATGAAACTTATTGTACTTC 57.440 33.333 0.00 0.00 38.92 3.01
2825 3159 9.295825 TCATGGTTGATGAAACTTATTGTACTT 57.704 29.630 0.00 0.00 38.19 2.24
2826 3160 8.862325 TCATGGTTGATGAAACTTATTGTACT 57.138 30.769 0.00 0.00 38.19 2.73
2843 3177 7.439157 TCATTTAGTCTCACTTTCATGGTTG 57.561 36.000 0.00 0.00 0.00 3.77
2845 3179 9.911788 ATAATCATTTAGTCTCACTTTCATGGT 57.088 29.630 0.00 0.00 0.00 3.55
2870 3205 9.099454 GTCAGAATACACTTTCGGAAATAGAAT 57.901 33.333 3.24 0.00 32.79 2.40
2880 3215 4.990543 TTGCAGTCAGAATACACTTTCG 57.009 40.909 0.00 0.00 0.00 3.46
2892 3227 6.718388 TCGATTATATTTGCTTTGCAGTCAG 58.282 36.000 0.00 0.00 40.61 3.51
2912 3247 4.726416 CACTTTGCTAATTGTGCTTCGAT 58.274 39.130 6.78 0.00 0.00 3.59
2933 3268 3.774616 CTGAATAGGCTCAGCTGCA 57.225 52.632 9.47 0.00 36.67 4.41
2953 3288 3.934579 TGGACGACAGACAATTCATGATG 59.065 43.478 0.00 0.00 0.00 3.07
2954 3289 4.206477 TGGACGACAGACAATTCATGAT 57.794 40.909 0.00 0.00 0.00 2.45
2955 3290 3.676291 TGGACGACAGACAATTCATGA 57.324 42.857 0.00 0.00 0.00 3.07
2977 3312 4.793071 CCATCAAACACAGAAAATGCGTA 58.207 39.130 0.00 0.00 0.00 4.42
2978 3313 3.641648 CCATCAAACACAGAAAATGCGT 58.358 40.909 0.00 0.00 0.00 5.24
3006 3341 6.095440 TCCAGAGTTTTGATTATGCTTAAGCC 59.905 38.462 24.30 9.21 41.18 4.35
3021 3360 3.388350 AGTTCGAGTTCCTCCAGAGTTTT 59.612 43.478 0.00 0.00 0.00 2.43
3024 3363 2.164338 GAGTTCGAGTTCCTCCAGAGT 58.836 52.381 0.00 0.00 0.00 3.24
3025 3364 2.422127 GAGAGTTCGAGTTCCTCCAGAG 59.578 54.545 0.00 0.00 0.00 3.35
3032 3371 2.230266 AGAGCTTGAGAGTTCGAGTTCC 59.770 50.000 5.38 0.00 42.83 3.62
3039 3378 5.106357 GGGATTTTTCAGAGCTTGAGAGTTC 60.106 44.000 0.00 0.00 37.07 3.01
3059 3398 0.259938 GAGGGATTGCCAACTGGGAT 59.740 55.000 0.00 0.00 40.01 3.85
3060 3399 0.846427 AGAGGGATTGCCAACTGGGA 60.846 55.000 0.00 0.00 40.01 4.37
3062 3401 1.547372 CAAAGAGGGATTGCCAACTGG 59.453 52.381 0.00 0.00 35.15 4.00
3063 3402 1.547372 CCAAAGAGGGATTGCCAACTG 59.453 52.381 0.00 0.00 35.15 3.16
3072 3411 2.009302 GAGGGGGCCAAAGAGGGAT 61.009 63.158 4.39 0.00 38.09 3.85
3075 3414 1.617839 AGAGAGGGGGCCAAAGAGG 60.618 63.158 4.39 0.00 41.84 3.69
3105 3444 3.640029 GACATACCCTCCTGAACCGATAA 59.360 47.826 0.00 0.00 0.00 1.75
3106 3445 3.228453 GACATACCCTCCTGAACCGATA 58.772 50.000 0.00 0.00 0.00 2.92
3107 3446 2.040178 GACATACCCTCCTGAACCGAT 58.960 52.381 0.00 0.00 0.00 4.18
3108 3447 1.481871 GACATACCCTCCTGAACCGA 58.518 55.000 0.00 0.00 0.00 4.69
3109 3448 0.464452 GGACATACCCTCCTGAACCG 59.536 60.000 0.00 0.00 0.00 4.44
3122 3461 1.306296 GGCAAAGCCTGGGGACATA 59.694 57.895 0.00 0.00 46.69 2.29
3138 3477 2.795110 TTGGTGTTGCAGCCTTGGC 61.795 57.895 2.97 2.97 0.00 4.52
3139 3478 1.067916 GTTGGTGTTGCAGCCTTGG 59.932 57.895 0.00 0.00 0.00 3.61
3177 3516 4.901197 TGGTATGTTTCTCCAGCAAGTA 57.099 40.909 0.00 0.00 0.00 2.24
3179 3518 4.264253 TCATGGTATGTTTCTCCAGCAAG 58.736 43.478 0.00 0.00 34.62 4.01
3180 3519 4.264253 CTCATGGTATGTTTCTCCAGCAA 58.736 43.478 0.00 0.00 34.62 3.91
3194 3533 4.443857 GCATCGCTGCTCATGGTA 57.556 55.556 3.51 0.00 45.32 3.25
3234 3573 2.197283 AGGGCTTTTGAAGAGCAGAG 57.803 50.000 10.00 0.00 41.89 3.35
3263 3602 4.320494 CCTTTGGACATTCAGGAAAAGACG 60.320 45.833 0.00 0.00 0.00 4.18
3264 3603 4.827284 TCCTTTGGACATTCAGGAAAAGAC 59.173 41.667 0.00 0.00 32.19 3.01
3303 3697 6.808212 CCAGTTTCTTTTTACATATGCAGTGG 59.192 38.462 1.58 0.00 0.00 4.00
3389 3784 5.702209 GCAACACAATCCTTCAATCCATTTT 59.298 36.000 0.00 0.00 0.00 1.82
3398 3793 3.490439 TCTCAGCAACACAATCCTTCA 57.510 42.857 0.00 0.00 0.00 3.02
3411 3806 5.765176 CACATGTTTTTGATCTTCTCAGCA 58.235 37.500 0.00 0.00 34.68 4.41
3417 3812 5.522456 TCAGTGCACATGTTTTTGATCTTC 58.478 37.500 21.04 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.