Multiple sequence alignment - TraesCS6A01G233700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G233700 chr6A 100.000 2654 0 0 1 2654 441440619 441443272 0.000000e+00 4902.0
1 TraesCS6A01G233700 chr6A 96.721 488 7 1 698 1185 441443282 441442804 0.000000e+00 804.0
2 TraesCS6A01G233700 chr6A 96.653 478 7 1 2186 2654 441441803 441441326 0.000000e+00 785.0
3 TraesCS6A01G233700 chr6A 97.727 308 7 0 343 650 411771236 411770929 5.030000e-147 531.0
4 TraesCS6A01G233700 chr6A 92.424 330 17 6 28 355 411771414 411771091 5.170000e-127 464.0
5 TraesCS6A01G233700 chr6A 100.000 137 0 0 343 479 441440828 441440964 1.220000e-63 254.0
6 TraesCS6A01G233700 chr6A 100.000 137 0 0 210 346 441440961 441441097 1.220000e-63 254.0
7 TraesCS6A01G233700 chr6A 95.082 61 1 1 648 706 411770911 411770851 7.820000e-16 95.3
8 TraesCS6A01G233700 chr1B 96.757 1511 18 8 699 2187 332586901 332585400 0.000000e+00 2490.0
9 TraesCS6A01G233700 chr1B 93.840 487 11 7 2186 2654 332586407 332586892 0.000000e+00 715.0
10 TraesCS6A01G233700 chr1B 96.154 234 7 2 693 924 332584505 332584738 5.360000e-102 381.0
11 TraesCS6A01G233700 chr1B 97.696 217 5 0 2438 2654 332584738 332584522 8.970000e-100 374.0
12 TraesCS6A01G233700 chr2D 95.219 1255 31 4 932 2182 512687067 512688296 0.000000e+00 1958.0
13 TraesCS6A01G233700 chr2D 91.339 254 13 1 2186 2430 512687320 512687067 3.270000e-89 339.0
14 TraesCS6A01G233700 chr2B 94.737 1254 40 5 932 2182 602763678 602764908 0.000000e+00 1927.0
15 TraesCS6A01G233700 chr2B 92.339 248 16 2 2186 2430 602763925 602763678 1.510000e-92 350.0
16 TraesCS6A01G233700 chr2B 91.964 224 18 0 695 918 359063758 359063981 5.510000e-82 315.0
17 TraesCS6A01G233700 chr2A 93.954 1257 41 14 932 2182 656241144 656242371 0.000000e+00 1868.0
18 TraesCS6A01G233700 chr2A 92.913 254 9 1 2186 2430 656241397 656241144 6.980000e-96 361.0
19 TraesCS6A01G233700 chr6B 97.727 308 7 0 343 650 468735725 468735418 5.030000e-147 531.0
20 TraesCS6A01G233700 chr6B 93.730 319 15 4 39 355 468735895 468735580 8.600000e-130 473.0
21 TraesCS6A01G233700 chr6B 92.982 228 14 2 692 918 664456064 664456290 5.480000e-87 331.0
22 TraesCS6A01G233700 chr6B 93.396 212 13 1 2444 2654 664456290 664456079 1.980000e-81 313.0
23 TraesCS6A01G233700 chr6B 100.000 51 0 0 648 698 468735400 468735350 7.820000e-16 95.3
24 TraesCS6A01G233700 chr6D 97.403 308 8 0 343 650 303060838 303060531 2.340000e-145 525.0
25 TraesCS6A01G233700 chr6D 93.103 319 17 4 39 355 303061008 303060693 1.860000e-126 462.0
26 TraesCS6A01G233700 chr6D 93.443 61 2 1 648 706 303060513 303060453 3.640000e-14 89.8
27 TraesCS6A01G233700 chr5B 93.636 220 14 0 699 918 535467376 535467595 1.970000e-86 329.0
28 TraesCS6A01G233700 chr5B 92.273 220 17 0 699 918 503114644 503114425 1.980000e-81 313.0
29 TraesCS6A01G233700 chr5B 93.365 211 14 0 2444 2654 535467595 535467385 1.980000e-81 313.0
30 TraesCS6A01G233700 chr5B 92.344 209 16 0 2444 2652 477522876 477522668 5.550000e-77 298.0
31 TraesCS6A01G233700 chr5B 91.943 211 17 0 2444 2654 503114425 503114635 2.000000e-76 296.0
32 TraesCS6A01G233700 chr5B 92.019 213 13 3 2444 2654 625119363 625119153 2.000000e-76 296.0
33 TraesCS6A01G233700 chr5B 92.019 213 13 3 2444 2654 628698912 628698702 2.000000e-76 296.0
34 TraesCS6A01G233700 chr3A 92.035 226 16 2 693 918 435356657 435356434 1.530000e-82 316.0
35 TraesCS6A01G233700 chr7B 90.909 231 19 2 688 918 747592884 747592656 2.570000e-80 309.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G233700 chr6A 441440619 441443272 2653 False 1803.333333 4902 100.000000 1 2654 3 chr6A.!!$F1 2653
1 TraesCS6A01G233700 chr6A 441441326 441443282 1956 True 794.500000 804 96.687000 698 2654 2 chr6A.!!$R2 1956
2 TraesCS6A01G233700 chr6A 411770851 411771414 563 True 363.433333 531 95.077667 28 706 3 chr6A.!!$R1 678
3 TraesCS6A01G233700 chr1B 332584522 332586901 2379 True 1432.000000 2490 97.226500 699 2654 2 chr1B.!!$R1 1955
4 TraesCS6A01G233700 chr1B 332584505 332586892 2387 False 548.000000 715 94.997000 693 2654 2 chr1B.!!$F1 1961
5 TraesCS6A01G233700 chr2D 512687067 512688296 1229 False 1958.000000 1958 95.219000 932 2182 1 chr2D.!!$F1 1250
6 TraesCS6A01G233700 chr2B 602763678 602764908 1230 False 1927.000000 1927 94.737000 932 2182 1 chr2B.!!$F2 1250
7 TraesCS6A01G233700 chr2A 656241144 656242371 1227 False 1868.000000 1868 93.954000 932 2182 1 chr2A.!!$F1 1250
8 TraesCS6A01G233700 chr6B 468735350 468735895 545 True 366.433333 531 97.152333 39 698 3 chr6B.!!$R2 659
9 TraesCS6A01G233700 chr6D 303060453 303061008 555 True 358.933333 525 94.649667 39 706 3 chr6D.!!$R1 667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
533 535 0.03659 TGCTCATAACCACTGCTGCA 59.963 50.0 0.88 0.88 0.0 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2102 3357 0.392595 GGTCTCCTAAAGTTGGCCCG 60.393 60.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.954092 CCTCTGCCTCAAAATGTAAGAC 57.046 45.455 0.00 0.00 0.00 3.01
22 23 3.691609 CCTCTGCCTCAAAATGTAAGACC 59.308 47.826 0.00 0.00 0.00 3.85
23 24 4.566488 CCTCTGCCTCAAAATGTAAGACCT 60.566 45.833 0.00 0.00 0.00 3.85
24 25 4.985538 TCTGCCTCAAAATGTAAGACCTT 58.014 39.130 0.00 0.00 0.00 3.50
25 26 5.385198 TCTGCCTCAAAATGTAAGACCTTT 58.615 37.500 0.00 0.00 0.00 3.11
26 27 5.833131 TCTGCCTCAAAATGTAAGACCTTTT 59.167 36.000 0.00 0.00 0.00 2.27
27 28 6.323739 TCTGCCTCAAAATGTAAGACCTTTTT 59.676 34.615 0.00 0.00 0.00 1.94
48 49 6.963083 TTTTACACTATCTAGAGAGAGGGC 57.037 41.667 20.98 0.00 40.27 5.19
49 50 5.648330 TTACACTATCTAGAGAGAGGGCA 57.352 43.478 20.98 0.78 40.27 5.36
51 52 4.406456 ACACTATCTAGAGAGAGGGCATG 58.594 47.826 20.98 9.72 40.27 4.06
67 68 3.244387 GGGCATGGCTAAAAAGGTCAAAA 60.244 43.478 19.78 0.00 0.00 2.44
69 70 4.213270 GGCATGGCTAAAAAGGTCAAAAAC 59.787 41.667 12.86 0.00 0.00 2.43
187 189 1.285667 TGCAATCCATCCACCATCACT 59.714 47.619 0.00 0.00 0.00 3.41
188 190 2.291735 TGCAATCCATCCACCATCACTT 60.292 45.455 0.00 0.00 0.00 3.16
218 220 6.115446 CCAGAGCCTTGATAATGTTCTACAA 58.885 40.000 0.00 0.00 0.00 2.41
268 270 2.978278 AGCATTAAGAGCTGGGCTAGAT 59.022 45.455 0.43 0.00 39.88 1.98
269 271 3.393941 AGCATTAAGAGCTGGGCTAGATT 59.606 43.478 0.43 0.00 39.88 2.40
270 272 3.750652 GCATTAAGAGCTGGGCTAGATTC 59.249 47.826 0.43 0.00 39.88 2.52
271 273 4.744867 GCATTAAGAGCTGGGCTAGATTCA 60.745 45.833 0.43 0.00 39.88 2.57
272 274 4.679373 TTAAGAGCTGGGCTAGATTCAG 57.321 45.455 0.43 0.00 39.88 3.02
276 278 3.393472 CTGGGCTAGATTCAGCACC 57.607 57.895 0.00 7.69 44.78 5.01
277 279 0.835941 CTGGGCTAGATTCAGCACCT 59.164 55.000 0.00 0.00 44.78 4.00
278 280 1.211457 CTGGGCTAGATTCAGCACCTT 59.789 52.381 0.00 0.00 44.78 3.50
279 281 1.065199 TGGGCTAGATTCAGCACCTTG 60.065 52.381 0.00 0.00 44.78 3.61
280 282 1.020437 GGCTAGATTCAGCACCTTGC 58.980 55.000 0.00 0.00 43.67 4.01
289 291 2.740826 GCACCTTGCGCCGAAGTA 60.741 61.111 4.18 0.00 31.71 2.24
290 292 2.106683 GCACCTTGCGCCGAAGTAT 61.107 57.895 4.18 0.00 31.71 2.12
291 293 1.715585 CACCTTGCGCCGAAGTATG 59.284 57.895 4.18 0.00 0.00 2.39
292 294 0.739462 CACCTTGCGCCGAAGTATGA 60.739 55.000 4.18 0.00 0.00 2.15
293 295 0.460284 ACCTTGCGCCGAAGTATGAG 60.460 55.000 4.18 0.00 0.00 2.90
294 296 1.638467 CTTGCGCCGAAGTATGAGC 59.362 57.895 4.18 0.00 0.00 4.26
295 297 1.079474 TTGCGCCGAAGTATGAGCA 60.079 52.632 4.18 0.00 0.00 4.26
296 298 1.083806 TTGCGCCGAAGTATGAGCAG 61.084 55.000 4.18 0.00 35.95 4.24
297 299 2.875786 GCGCCGAAGTATGAGCAGC 61.876 63.158 0.00 0.00 0.00 5.25
298 300 1.227089 CGCCGAAGTATGAGCAGCT 60.227 57.895 0.00 0.00 0.00 4.24
299 301 1.485838 CGCCGAAGTATGAGCAGCTG 61.486 60.000 10.11 10.11 0.00 4.24
300 302 0.460987 GCCGAAGTATGAGCAGCTGT 60.461 55.000 16.64 1.59 0.00 4.40
301 303 1.202417 GCCGAAGTATGAGCAGCTGTA 60.202 52.381 16.64 2.57 0.00 2.74
302 304 2.736978 CCGAAGTATGAGCAGCTGTAG 58.263 52.381 16.64 0.00 0.00 2.74
303 305 2.099921 CCGAAGTATGAGCAGCTGTAGT 59.900 50.000 16.64 0.00 0.00 2.73
304 306 3.111838 CGAAGTATGAGCAGCTGTAGTG 58.888 50.000 16.64 0.00 0.00 2.74
305 307 2.593346 AGTATGAGCAGCTGTAGTGC 57.407 50.000 16.64 0.26 41.54 4.40
310 312 4.919653 GCAGCTGTAGTGCTAGCA 57.080 55.556 14.93 14.93 41.98 3.49
311 313 2.675519 GCAGCTGTAGTGCTAGCAG 58.324 57.895 20.03 7.15 41.98 4.24
312 314 0.108424 GCAGCTGTAGTGCTAGCAGT 60.108 55.000 27.35 27.35 41.98 4.40
313 315 1.919918 CAGCTGTAGTGCTAGCAGTC 58.080 55.000 27.99 18.84 41.98 3.51
314 316 0.820871 AGCTGTAGTGCTAGCAGTCC 59.179 55.000 27.99 17.98 42.10 3.85
315 317 0.820871 GCTGTAGTGCTAGCAGTCCT 59.179 55.000 27.99 18.70 39.67 3.85
316 318 1.470632 GCTGTAGTGCTAGCAGTCCTG 60.471 57.143 27.99 20.71 39.67 3.86
326 328 4.298009 CAGTCCTGCTGCCTCTTG 57.702 61.111 0.00 0.00 38.52 3.02
327 329 2.039405 CAGTCCTGCTGCCTCTTGC 61.039 63.158 0.00 0.00 38.52 4.01
337 339 1.079612 GCCTCTTGCATTGGGTTGC 60.080 57.895 0.00 0.00 43.07 4.17
338 340 1.538687 GCCTCTTGCATTGGGTTGCT 61.539 55.000 0.00 0.00 43.18 3.91
339 341 0.971386 CCTCTTGCATTGGGTTGCTT 59.029 50.000 0.00 0.00 43.18 3.91
340 342 1.067354 CCTCTTGCATTGGGTTGCTTC 60.067 52.381 0.00 0.00 43.18 3.86
341 343 0.968405 TCTTGCATTGGGTTGCTTCC 59.032 50.000 0.00 0.00 43.18 3.46
342 344 0.971386 CTTGCATTGGGTTGCTTCCT 59.029 50.000 0.00 0.00 43.18 3.36
343 345 0.680618 TTGCATTGGGTTGCTTCCTG 59.319 50.000 0.00 0.00 43.18 3.86
344 346 0.469705 TGCATTGGGTTGCTTCCTGT 60.470 50.000 0.00 0.00 43.18 4.00
345 347 0.681175 GCATTGGGTTGCTTCCTGTT 59.319 50.000 0.00 0.00 39.57 3.16
346 348 1.337167 GCATTGGGTTGCTTCCTGTTC 60.337 52.381 0.00 0.00 39.57 3.18
347 349 2.242043 CATTGGGTTGCTTCCTGTTCT 58.758 47.619 0.00 0.00 0.00 3.01
348 350 3.420893 CATTGGGTTGCTTCCTGTTCTA 58.579 45.455 0.00 0.00 0.00 2.10
349 351 2.561478 TGGGTTGCTTCCTGTTCTAC 57.439 50.000 0.00 0.00 0.00 2.59
350 352 1.771854 TGGGTTGCTTCCTGTTCTACA 59.228 47.619 0.00 0.00 0.00 2.74
351 353 2.173782 TGGGTTGCTTCCTGTTCTACAA 59.826 45.455 0.00 0.00 0.00 2.41
352 354 2.552743 GGGTTGCTTCCTGTTCTACAAC 59.447 50.000 0.00 0.00 37.31 3.32
353 355 3.898517 GTTGCTTCCTGTTCTACAACC 57.101 47.619 0.00 0.00 33.10 3.77
354 356 2.552743 GTTGCTTCCTGTTCTACAACCC 59.447 50.000 0.00 0.00 33.10 4.11
355 357 2.054799 TGCTTCCTGTTCTACAACCCT 58.945 47.619 0.00 0.00 0.00 4.34
356 358 2.441750 TGCTTCCTGTTCTACAACCCTT 59.558 45.455 0.00 0.00 0.00 3.95
357 359 2.814336 GCTTCCTGTTCTACAACCCTTG 59.186 50.000 0.00 0.00 0.00 3.61
359 361 4.504340 GCTTCCTGTTCTACAACCCTTGTA 60.504 45.833 0.00 0.00 43.27 2.41
367 369 2.853235 ACAACCCTTGTAGGCTGTAC 57.147 50.000 0.00 0.00 43.27 2.90
368 370 1.001633 ACAACCCTTGTAGGCTGTACG 59.998 52.381 0.00 0.00 43.27 3.67
369 371 1.001633 CAACCCTTGTAGGCTGTACGT 59.998 52.381 0.00 0.00 32.73 3.57
370 372 1.345063 ACCCTTGTAGGCTGTACGTT 58.655 50.000 0.00 0.00 32.73 3.99
371 373 1.695788 ACCCTTGTAGGCTGTACGTTT 59.304 47.619 0.00 0.00 32.73 3.60
372 374 2.105306 ACCCTTGTAGGCTGTACGTTTT 59.895 45.455 0.00 0.00 32.73 2.43
373 375 2.740447 CCCTTGTAGGCTGTACGTTTTC 59.260 50.000 0.00 0.00 32.73 2.29
374 376 2.740447 CCTTGTAGGCTGTACGTTTTCC 59.260 50.000 0.00 0.00 0.00 3.13
375 377 3.395639 CTTGTAGGCTGTACGTTTTCCA 58.604 45.455 0.00 0.00 0.00 3.53
376 378 3.034721 TGTAGGCTGTACGTTTTCCAG 57.965 47.619 0.00 0.00 0.00 3.86
377 379 2.289195 TGTAGGCTGTACGTTTTCCAGG 60.289 50.000 0.00 0.00 0.00 4.45
378 380 1.873863 GGCTGTACGTTTTCCAGGC 59.126 57.895 12.51 12.51 43.23 4.85
379 381 1.583495 GGCTGTACGTTTTCCAGGCC 61.583 60.000 15.27 0.00 43.68 5.19
380 382 0.887387 GCTGTACGTTTTCCAGGCCA 60.887 55.000 5.01 0.00 0.00 5.36
381 383 1.156736 CTGTACGTTTTCCAGGCCAG 58.843 55.000 5.01 0.00 0.00 4.85
382 384 0.887387 TGTACGTTTTCCAGGCCAGC 60.887 55.000 5.01 0.00 0.00 4.85
383 385 0.887387 GTACGTTTTCCAGGCCAGCA 60.887 55.000 5.01 0.00 0.00 4.41
384 386 0.037590 TACGTTTTCCAGGCCAGCAT 59.962 50.000 5.01 0.00 0.00 3.79
385 387 0.827507 ACGTTTTCCAGGCCAGCATT 60.828 50.000 5.01 0.00 0.00 3.56
386 388 1.173043 CGTTTTCCAGGCCAGCATTA 58.827 50.000 5.01 0.00 0.00 1.90
387 389 1.543802 CGTTTTCCAGGCCAGCATTAA 59.456 47.619 5.01 0.00 0.00 1.40
388 390 2.415893 CGTTTTCCAGGCCAGCATTAAG 60.416 50.000 5.01 0.00 0.00 1.85
389 391 2.825532 GTTTTCCAGGCCAGCATTAAGA 59.174 45.455 5.01 0.00 0.00 2.10
390 392 2.425143 TTCCAGGCCAGCATTAAGAG 57.575 50.000 5.01 0.00 0.00 2.85
391 393 0.107017 TCCAGGCCAGCATTAAGAGC 60.107 55.000 5.01 0.00 0.00 4.09
392 394 0.106819 CCAGGCCAGCATTAAGAGCT 60.107 55.000 5.01 0.00 44.62 4.09
399 401 2.926778 AGCATTAAGAGCTGGGCTAG 57.073 50.000 0.00 0.00 39.88 3.42
400 402 2.402564 AGCATTAAGAGCTGGGCTAGA 58.597 47.619 0.43 0.00 39.88 2.43
401 403 2.978278 AGCATTAAGAGCTGGGCTAGAT 59.022 45.455 0.43 0.00 39.88 1.98
402 404 3.393941 AGCATTAAGAGCTGGGCTAGATT 59.606 43.478 0.43 0.00 39.88 2.40
403 405 3.750652 GCATTAAGAGCTGGGCTAGATTC 59.249 47.826 0.43 0.00 39.88 2.52
404 406 4.744867 GCATTAAGAGCTGGGCTAGATTCA 60.745 45.833 0.43 0.00 39.88 2.57
405 407 4.679373 TTAAGAGCTGGGCTAGATTCAG 57.321 45.455 0.43 0.00 39.88 3.02
409 411 3.393472 CTGGGCTAGATTCAGCACC 57.607 57.895 0.00 7.69 44.78 5.01
410 412 0.835941 CTGGGCTAGATTCAGCACCT 59.164 55.000 0.00 0.00 44.78 4.00
411 413 1.211457 CTGGGCTAGATTCAGCACCTT 59.789 52.381 0.00 0.00 44.78 3.50
412 414 1.065199 TGGGCTAGATTCAGCACCTTG 60.065 52.381 0.00 0.00 44.78 3.61
413 415 1.020437 GGCTAGATTCAGCACCTTGC 58.980 55.000 0.00 0.00 43.67 4.01
422 424 2.740826 GCACCTTGCGCCGAAGTA 60.741 61.111 4.18 0.00 31.71 2.24
423 425 2.106683 GCACCTTGCGCCGAAGTAT 61.107 57.895 4.18 0.00 31.71 2.12
424 426 1.715585 CACCTTGCGCCGAAGTATG 59.284 57.895 4.18 0.00 0.00 2.39
425 427 0.739462 CACCTTGCGCCGAAGTATGA 60.739 55.000 4.18 0.00 0.00 2.15
426 428 0.460284 ACCTTGCGCCGAAGTATGAG 60.460 55.000 4.18 0.00 0.00 2.90
427 429 1.638467 CTTGCGCCGAAGTATGAGC 59.362 57.895 4.18 0.00 0.00 4.26
428 430 1.079474 TTGCGCCGAAGTATGAGCA 60.079 52.632 4.18 0.00 0.00 4.26
429 431 1.083806 TTGCGCCGAAGTATGAGCAG 61.084 55.000 4.18 0.00 35.95 4.24
430 432 2.875786 GCGCCGAAGTATGAGCAGC 61.876 63.158 0.00 0.00 0.00 5.25
431 433 1.227089 CGCCGAAGTATGAGCAGCT 60.227 57.895 0.00 0.00 0.00 4.24
432 434 1.485838 CGCCGAAGTATGAGCAGCTG 61.486 60.000 10.11 10.11 0.00 4.24
433 435 0.460987 GCCGAAGTATGAGCAGCTGT 60.461 55.000 16.64 1.59 0.00 4.40
434 436 1.202417 GCCGAAGTATGAGCAGCTGTA 60.202 52.381 16.64 2.57 0.00 2.74
435 437 2.736978 CCGAAGTATGAGCAGCTGTAG 58.263 52.381 16.64 0.00 0.00 2.74
436 438 2.099921 CCGAAGTATGAGCAGCTGTAGT 59.900 50.000 16.64 0.00 0.00 2.73
437 439 3.111838 CGAAGTATGAGCAGCTGTAGTG 58.888 50.000 16.64 0.00 0.00 2.74
438 440 2.593346 AGTATGAGCAGCTGTAGTGC 57.407 50.000 16.64 0.26 41.54 4.40
443 445 4.919653 GCAGCTGTAGTGCTAGCA 57.080 55.556 14.93 14.93 41.98 3.49
444 446 2.675519 GCAGCTGTAGTGCTAGCAG 58.324 57.895 20.03 7.15 41.98 4.24
445 447 0.108424 GCAGCTGTAGTGCTAGCAGT 60.108 55.000 27.35 27.35 41.98 4.40
446 448 1.919918 CAGCTGTAGTGCTAGCAGTC 58.080 55.000 27.99 18.84 41.98 3.51
447 449 0.820871 AGCTGTAGTGCTAGCAGTCC 59.179 55.000 27.99 17.98 42.10 3.85
448 450 0.820871 GCTGTAGTGCTAGCAGTCCT 59.179 55.000 27.99 18.70 39.67 3.85
449 451 1.470632 GCTGTAGTGCTAGCAGTCCTG 60.471 57.143 27.99 20.71 39.67 3.86
459 461 4.298009 CAGTCCTGCTGCCTCTTG 57.702 61.111 0.00 0.00 38.52 3.02
460 462 2.039405 CAGTCCTGCTGCCTCTTGC 61.039 63.158 0.00 0.00 38.52 4.01
470 472 1.079612 GCCTCTTGCATTGGGTTGC 60.080 57.895 0.00 0.00 43.07 4.17
471 473 1.538687 GCCTCTTGCATTGGGTTGCT 61.539 55.000 0.00 0.00 43.18 3.91
472 474 0.971386 CCTCTTGCATTGGGTTGCTT 59.029 50.000 0.00 0.00 43.18 3.91
473 475 1.067354 CCTCTTGCATTGGGTTGCTTC 60.067 52.381 0.00 0.00 43.18 3.86
474 476 0.968405 TCTTGCATTGGGTTGCTTCC 59.032 50.000 0.00 0.00 43.18 3.46
475 477 0.971386 CTTGCATTGGGTTGCTTCCT 59.029 50.000 0.00 0.00 43.18 3.36
476 478 0.680618 TTGCATTGGGTTGCTTCCTG 59.319 50.000 0.00 0.00 43.18 3.86
477 479 0.469705 TGCATTGGGTTGCTTCCTGT 60.470 50.000 0.00 0.00 43.18 4.00
478 480 0.681175 GCATTGGGTTGCTTCCTGTT 59.319 50.000 0.00 0.00 39.57 3.16
479 481 1.070601 GCATTGGGTTGCTTCCTGTTT 59.929 47.619 0.00 0.00 39.57 2.83
480 482 2.867647 GCATTGGGTTGCTTCCTGTTTC 60.868 50.000 0.00 0.00 39.57 2.78
481 483 2.452600 TTGGGTTGCTTCCTGTTTCT 57.547 45.000 0.00 0.00 0.00 2.52
482 484 1.981256 TGGGTTGCTTCCTGTTTCTC 58.019 50.000 0.00 0.00 0.00 2.87
483 485 1.214175 TGGGTTGCTTCCTGTTTCTCA 59.786 47.619 0.00 0.00 0.00 3.27
484 486 1.882623 GGGTTGCTTCCTGTTTCTCAG 59.117 52.381 0.00 0.00 43.27 3.35
485 487 1.268079 GGTTGCTTCCTGTTTCTCAGC 59.732 52.381 0.00 0.00 42.38 4.26
486 488 1.268079 GTTGCTTCCTGTTTCTCAGCC 59.732 52.381 0.00 0.00 42.38 4.85
487 489 0.250901 TGCTTCCTGTTTCTCAGCCC 60.251 55.000 0.00 0.00 42.38 5.19
488 490 0.250901 GCTTCCTGTTTCTCAGCCCA 60.251 55.000 0.00 0.00 42.38 5.36
489 491 1.615384 GCTTCCTGTTTCTCAGCCCAT 60.615 52.381 0.00 0.00 42.38 4.00
490 492 2.363683 CTTCCTGTTTCTCAGCCCATC 58.636 52.381 0.00 0.00 42.38 3.51
491 493 1.661463 TCCTGTTTCTCAGCCCATCT 58.339 50.000 0.00 0.00 42.38 2.90
492 494 1.280133 TCCTGTTTCTCAGCCCATCTG 59.720 52.381 0.00 0.00 42.38 2.90
508 510 3.690139 CCATCTGATGGCAATATCTCAGC 59.310 47.826 22.79 0.00 44.70 4.26
509 511 4.324267 CATCTGATGGCAATATCTCAGCA 58.676 43.478 9.82 1.37 36.04 4.41
510 512 4.635699 TCTGATGGCAATATCTCAGCAT 57.364 40.909 9.63 0.00 36.04 3.79
511 513 4.981812 TCTGATGGCAATATCTCAGCATT 58.018 39.130 9.63 0.00 36.04 3.56
512 514 4.760204 TCTGATGGCAATATCTCAGCATTG 59.240 41.667 9.63 0.00 36.04 2.82
513 515 4.466827 TGATGGCAATATCTCAGCATTGT 58.533 39.130 0.00 0.00 35.12 2.71
514 516 4.891168 TGATGGCAATATCTCAGCATTGTT 59.109 37.500 0.00 0.00 35.12 2.83
515 517 4.642445 TGGCAATATCTCAGCATTGTTG 57.358 40.909 0.00 0.00 35.12 3.33
527 529 3.855689 GCATTGTTGCTCATAACCACT 57.144 42.857 0.00 0.00 45.77 4.00
528 530 3.504863 GCATTGTTGCTCATAACCACTG 58.495 45.455 0.00 0.00 45.77 3.66
529 531 3.504863 CATTGTTGCTCATAACCACTGC 58.495 45.455 0.00 0.00 0.00 4.40
530 532 2.566833 TGTTGCTCATAACCACTGCT 57.433 45.000 0.00 0.00 0.00 4.24
531 533 2.153645 TGTTGCTCATAACCACTGCTG 58.846 47.619 0.00 0.00 0.00 4.41
532 534 1.135575 GTTGCTCATAACCACTGCTGC 60.136 52.381 0.00 0.00 0.00 5.25
533 535 0.036590 TGCTCATAACCACTGCTGCA 59.963 50.000 0.88 0.88 0.00 4.41
534 536 1.340308 TGCTCATAACCACTGCTGCAT 60.340 47.619 1.31 0.00 0.00 3.96
535 537 1.332997 GCTCATAACCACTGCTGCATC 59.667 52.381 1.31 0.00 0.00 3.91
536 538 2.635714 CTCATAACCACTGCTGCATCA 58.364 47.619 1.31 0.00 0.00 3.07
537 539 2.612672 CTCATAACCACTGCTGCATCAG 59.387 50.000 15.82 15.82 39.86 2.90
538 540 2.236893 TCATAACCACTGCTGCATCAGA 59.763 45.455 23.65 1.38 37.51 3.27
539 541 2.857186 TAACCACTGCTGCATCAGAA 57.143 45.000 23.65 1.58 37.51 3.02
540 542 2.211250 AACCACTGCTGCATCAGAAT 57.789 45.000 23.65 5.93 37.51 2.40
541 543 2.211250 ACCACTGCTGCATCAGAATT 57.789 45.000 23.65 4.37 37.51 2.17
542 544 2.522185 ACCACTGCTGCATCAGAATTT 58.478 42.857 23.65 0.00 37.51 1.82
543 545 2.230508 ACCACTGCTGCATCAGAATTTG 59.769 45.455 23.65 11.13 37.51 2.32
544 546 2.416836 CCACTGCTGCATCAGAATTTGG 60.417 50.000 23.65 15.97 37.51 3.28
545 547 2.230508 CACTGCTGCATCAGAATTTGGT 59.769 45.455 23.65 0.00 37.51 3.67
546 548 2.895404 ACTGCTGCATCAGAATTTGGTT 59.105 40.909 23.65 0.00 37.51 3.67
547 549 3.057033 ACTGCTGCATCAGAATTTGGTTC 60.057 43.478 23.65 0.00 37.51 3.62
549 551 3.575256 TGCTGCATCAGAATTTGGTTCTT 59.425 39.130 0.00 0.00 44.80 2.52
550 552 4.171754 GCTGCATCAGAATTTGGTTCTTC 58.828 43.478 0.00 0.00 44.80 2.87
551 553 4.741342 CTGCATCAGAATTTGGTTCTTCC 58.259 43.478 0.00 0.00 44.80 3.46
552 554 3.511146 TGCATCAGAATTTGGTTCTTCCC 59.489 43.478 0.00 0.00 44.80 3.97
553 555 3.118992 GCATCAGAATTTGGTTCTTCCCC 60.119 47.826 0.00 0.00 44.80 4.81
554 556 3.893753 TCAGAATTTGGTTCTTCCCCA 57.106 42.857 0.00 0.00 44.80 4.96
555 557 4.191804 TCAGAATTTGGTTCTTCCCCAA 57.808 40.909 0.00 0.00 44.80 4.12
556 558 4.151883 TCAGAATTTGGTTCTTCCCCAAG 58.848 43.478 0.00 0.00 44.80 3.61
557 559 4.141041 TCAGAATTTGGTTCTTCCCCAAGA 60.141 41.667 0.00 0.00 44.80 3.02
558 560 4.774200 CAGAATTTGGTTCTTCCCCAAGAT 59.226 41.667 0.00 0.00 44.80 2.40
559 561 4.774200 AGAATTTGGTTCTTCCCCAAGATG 59.226 41.667 0.00 0.00 44.80 2.90
560 562 3.611025 TTTGGTTCTTCCCCAAGATGT 57.389 42.857 0.00 0.00 42.63 3.06
561 563 4.733077 TTTGGTTCTTCCCCAAGATGTA 57.267 40.909 0.00 0.00 42.63 2.29
562 564 3.713826 TGGTTCTTCCCCAAGATGTAC 57.286 47.619 0.00 0.00 38.50 2.90
563 565 3.256704 TGGTTCTTCCCCAAGATGTACT 58.743 45.455 0.00 0.00 38.50 2.73
564 566 3.263425 TGGTTCTTCCCCAAGATGTACTC 59.737 47.826 0.00 0.00 38.50 2.59
565 567 3.519913 GGTTCTTCCCCAAGATGTACTCT 59.480 47.826 0.00 0.00 38.50 3.24
566 568 4.019231 GGTTCTTCCCCAAGATGTACTCTT 60.019 45.833 0.00 0.00 45.34 2.85
567 569 5.189145 GGTTCTTCCCCAAGATGTACTCTTA 59.811 44.000 7.10 0.00 42.48 2.10
568 570 6.296259 GGTTCTTCCCCAAGATGTACTCTTAA 60.296 42.308 7.10 0.30 42.48 1.85
569 571 6.546428 TCTTCCCCAAGATGTACTCTTAAG 57.454 41.667 0.00 0.00 42.48 1.85
570 572 4.755266 TCCCCAAGATGTACTCTTAAGC 57.245 45.455 0.00 0.00 42.48 3.09
571 573 3.454812 TCCCCAAGATGTACTCTTAAGCC 59.545 47.826 0.00 0.00 42.48 4.35
572 574 3.199946 CCCCAAGATGTACTCTTAAGCCA 59.800 47.826 0.00 0.00 42.48 4.75
573 575 4.446371 CCCAAGATGTACTCTTAAGCCAG 58.554 47.826 0.00 0.00 42.48 4.85
574 576 4.162320 CCCAAGATGTACTCTTAAGCCAGA 59.838 45.833 0.00 0.00 42.48 3.86
575 577 5.338381 CCCAAGATGTACTCTTAAGCCAGAA 60.338 44.000 0.00 0.00 42.48 3.02
576 578 6.352516 CCAAGATGTACTCTTAAGCCAGAAT 58.647 40.000 0.00 0.00 42.48 2.40
577 579 6.481644 CCAAGATGTACTCTTAAGCCAGAATC 59.518 42.308 0.00 0.00 42.48 2.52
578 580 7.271511 CAAGATGTACTCTTAAGCCAGAATCT 58.728 38.462 0.00 1.34 42.48 2.40
579 581 6.815089 AGATGTACTCTTAAGCCAGAATCTG 58.185 40.000 2.68 2.68 0.00 2.90
580 582 4.759782 TGTACTCTTAAGCCAGAATCTGC 58.240 43.478 4.40 0.65 0.00 4.26
581 583 3.274095 ACTCTTAAGCCAGAATCTGCC 57.726 47.619 4.40 0.00 0.00 4.85
582 584 2.092699 ACTCTTAAGCCAGAATCTGCCC 60.093 50.000 4.40 0.00 0.00 5.36
583 585 1.212935 TCTTAAGCCAGAATCTGCCCC 59.787 52.381 4.40 0.00 0.00 5.80
584 586 0.258774 TTAAGCCAGAATCTGCCCCC 59.741 55.000 4.40 0.00 0.00 5.40
585 587 0.918799 TAAGCCAGAATCTGCCCCCA 60.919 55.000 4.40 0.00 0.00 4.96
586 588 2.123982 GCCAGAATCTGCCCCCAG 60.124 66.667 4.40 0.00 40.54 4.45
587 589 2.123982 CCAGAATCTGCCCCCAGC 60.124 66.667 4.40 0.00 39.00 4.85
588 590 2.687610 CCAGAATCTGCCCCCAGCT 61.688 63.158 4.40 0.00 44.23 4.24
589 591 1.305623 CAGAATCTGCCCCCAGCTT 59.694 57.895 0.00 0.00 44.23 3.74
590 592 1.035932 CAGAATCTGCCCCCAGCTTG 61.036 60.000 0.00 0.00 44.23 4.01
591 593 1.755783 GAATCTGCCCCCAGCTTGG 60.756 63.158 0.00 0.00 44.23 3.61
592 594 2.215451 GAATCTGCCCCCAGCTTGGA 62.215 60.000 5.14 0.00 40.96 3.53
593 595 1.587522 AATCTGCCCCCAGCTTGGAT 61.588 55.000 5.14 0.00 40.96 3.41
594 596 2.294170 ATCTGCCCCCAGCTTGGATG 62.294 60.000 5.14 0.00 40.96 3.51
595 597 4.764771 TGCCCCCAGCTTGGATGC 62.765 66.667 5.14 8.29 40.96 3.91
597 599 4.064768 CCCCCAGCTTGGATGCCA 62.065 66.667 5.14 0.00 40.96 4.92
598 600 2.037687 CCCCAGCTTGGATGCCAA 59.962 61.111 5.14 0.00 40.96 4.52
599 601 1.610086 CCCCAGCTTGGATGCCAAA 60.610 57.895 5.14 0.00 43.44 3.28
600 602 1.193462 CCCCAGCTTGGATGCCAAAA 61.193 55.000 5.14 0.00 43.44 2.44
601 603 0.037046 CCCAGCTTGGATGCCAAAAC 60.037 55.000 0.00 0.00 43.44 2.43
602 604 0.037046 CCAGCTTGGATGCCAAAACC 60.037 55.000 0.10 0.00 43.44 3.27
603 605 0.388907 CAGCTTGGATGCCAAAACCG 60.389 55.000 0.10 0.00 43.44 4.44
604 606 0.539438 AGCTTGGATGCCAAAACCGA 60.539 50.000 0.10 0.00 43.44 4.69
605 607 0.316841 GCTTGGATGCCAAAACCGAA 59.683 50.000 0.10 0.00 43.44 4.30
606 608 1.669795 GCTTGGATGCCAAAACCGAAG 60.670 52.381 0.10 0.00 43.44 3.79
607 609 0.316841 TTGGATGCCAAAACCGAAGC 59.683 50.000 0.00 0.00 40.92 3.86
608 610 0.539438 TGGATGCCAAAACCGAAGCT 60.539 50.000 0.00 0.00 0.00 3.74
609 611 0.109132 GGATGCCAAAACCGAAGCTG 60.109 55.000 0.00 0.00 0.00 4.24
610 612 0.733909 GATGCCAAAACCGAAGCTGC 60.734 55.000 0.00 0.00 0.00 5.25
611 613 1.462731 ATGCCAAAACCGAAGCTGCA 61.463 50.000 1.02 0.00 0.00 4.41
612 614 1.372128 GCCAAAACCGAAGCTGCAG 60.372 57.895 10.11 10.11 0.00 4.41
613 615 1.372128 CCAAAACCGAAGCTGCAGC 60.372 57.895 31.53 31.53 42.49 5.25
614 616 1.359833 CAAAACCGAAGCTGCAGCA 59.640 52.632 38.24 0.00 45.16 4.41
615 617 0.662374 CAAAACCGAAGCTGCAGCAG 60.662 55.000 38.24 27.25 45.16 4.24
634 636 1.992170 GCTTTTGCAGCTGGATCAAG 58.008 50.000 17.12 17.81 46.27 3.02
635 637 1.542915 GCTTTTGCAGCTGGATCAAGA 59.457 47.619 23.79 11.87 46.27 3.02
636 638 2.165845 GCTTTTGCAGCTGGATCAAGAT 59.834 45.455 23.79 0.00 46.27 2.40
637 639 3.734293 GCTTTTGCAGCTGGATCAAGATC 60.734 47.826 23.79 9.46 46.27 2.75
638 640 2.793288 TTGCAGCTGGATCAAGATCA 57.207 45.000 17.12 0.00 39.54 2.92
639 641 3.292492 TTGCAGCTGGATCAAGATCAT 57.708 42.857 17.12 0.00 39.54 2.45
640 642 4.426736 TTGCAGCTGGATCAAGATCATA 57.573 40.909 17.12 0.00 39.54 2.15
641 643 4.635699 TGCAGCTGGATCAAGATCATAT 57.364 40.909 17.12 0.00 39.54 1.78
642 644 4.981812 TGCAGCTGGATCAAGATCATATT 58.018 39.130 17.12 0.00 39.54 1.28
643 645 5.382616 TGCAGCTGGATCAAGATCATATTT 58.617 37.500 17.12 0.00 39.54 1.40
644 646 5.472478 TGCAGCTGGATCAAGATCATATTTC 59.528 40.000 17.12 0.00 39.54 2.17
645 647 5.706369 GCAGCTGGATCAAGATCATATTTCT 59.294 40.000 17.12 0.00 39.54 2.52
646 648 6.348622 GCAGCTGGATCAAGATCATATTTCTG 60.349 42.308 17.12 9.68 39.54 3.02
647 649 5.706369 AGCTGGATCAAGATCATATTTCTGC 59.294 40.000 11.78 8.36 39.54 4.26
648 650 5.472478 GCTGGATCAAGATCATATTTCTGCA 59.528 40.000 11.78 0.00 39.54 4.41
649 651 6.568081 GCTGGATCAAGATCATATTTCTGCAC 60.568 42.308 11.78 0.00 39.54 4.57
650 652 6.598503 TGGATCAAGATCATATTTCTGCACT 58.401 36.000 11.78 0.00 39.54 4.40
651 653 7.058525 TGGATCAAGATCATATTTCTGCACTT 58.941 34.615 11.78 0.00 39.54 3.16
652 654 7.558807 TGGATCAAGATCATATTTCTGCACTTT 59.441 33.333 11.78 0.00 39.54 2.66
653 655 7.861372 GGATCAAGATCATATTTCTGCACTTTG 59.139 37.037 11.78 0.00 39.54 2.77
654 656 7.692460 TCAAGATCATATTTCTGCACTTTGT 57.308 32.000 0.00 0.00 0.00 2.83
655 657 7.755591 TCAAGATCATATTTCTGCACTTTGTC 58.244 34.615 0.00 0.00 0.00 3.18
656 658 7.391275 TCAAGATCATATTTCTGCACTTTGTCA 59.609 33.333 0.00 0.00 0.00 3.58
657 659 7.876936 AGATCATATTTCTGCACTTTGTCAT 57.123 32.000 0.00 0.00 0.00 3.06
658 660 7.928103 AGATCATATTTCTGCACTTTGTCATC 58.072 34.615 0.00 0.00 0.00 2.92
659 661 7.555195 AGATCATATTTCTGCACTTTGTCATCA 59.445 33.333 0.00 0.00 0.00 3.07
660 662 7.634671 TCATATTTCTGCACTTTGTCATCAT 57.365 32.000 0.00 0.00 0.00 2.45
661 663 8.058667 TCATATTTCTGCACTTTGTCATCATT 57.941 30.769 0.00 0.00 0.00 2.57
662 664 8.525316 TCATATTTCTGCACTTTGTCATCATTT 58.475 29.630 0.00 0.00 0.00 2.32
663 665 9.791820 CATATTTCTGCACTTTGTCATCATTTA 57.208 29.630 0.00 0.00 0.00 1.40
665 667 6.882610 TTCTGCACTTTGTCATCATTTAGT 57.117 33.333 0.00 0.00 0.00 2.24
666 668 7.977789 TTCTGCACTTTGTCATCATTTAGTA 57.022 32.000 0.00 0.00 0.00 1.82
667 669 7.364522 TCTGCACTTTGTCATCATTTAGTAC 57.635 36.000 0.00 0.00 0.00 2.73
668 670 7.161404 TCTGCACTTTGTCATCATTTAGTACT 58.839 34.615 0.00 0.00 0.00 2.73
669 671 7.118245 TCTGCACTTTGTCATCATTTAGTACTG 59.882 37.037 5.39 0.00 0.00 2.74
670 672 6.710295 TGCACTTTGTCATCATTTAGTACTGT 59.290 34.615 5.39 0.00 0.00 3.55
671 673 7.228507 TGCACTTTGTCATCATTTAGTACTGTT 59.771 33.333 5.39 0.00 0.00 3.16
672 674 7.535258 GCACTTTGTCATCATTTAGTACTGTTG 59.465 37.037 5.39 0.41 0.00 3.33
673 675 8.559536 CACTTTGTCATCATTTAGTACTGTTGT 58.440 33.333 5.39 0.00 0.00 3.32
674 676 8.559536 ACTTTGTCATCATTTAGTACTGTTGTG 58.440 33.333 5.39 0.00 0.00 3.33
675 677 8.445275 TTTGTCATCATTTAGTACTGTTGTGT 57.555 30.769 5.39 0.00 0.00 3.72
676 678 7.652300 TGTCATCATTTAGTACTGTTGTGTC 57.348 36.000 5.39 0.00 0.00 3.67
677 679 7.213678 TGTCATCATTTAGTACTGTTGTGTCA 58.786 34.615 5.39 0.00 0.00 3.58
678 680 7.713073 TGTCATCATTTAGTACTGTTGTGTCAA 59.287 33.333 5.39 0.00 0.00 3.18
679 681 8.721478 GTCATCATTTAGTACTGTTGTGTCAAT 58.279 33.333 5.39 0.00 0.00 2.57
680 682 8.720562 TCATCATTTAGTACTGTTGTGTCAATG 58.279 33.333 5.39 2.00 0.00 2.82
681 683 6.898041 TCATTTAGTACTGTTGTGTCAATGC 58.102 36.000 5.39 0.00 0.00 3.56
682 684 5.682943 TTTAGTACTGTTGTGTCAATGCC 57.317 39.130 5.39 0.00 0.00 4.40
683 685 3.207265 AGTACTGTTGTGTCAATGCCA 57.793 42.857 0.00 0.00 0.00 4.92
684 686 3.754965 AGTACTGTTGTGTCAATGCCAT 58.245 40.909 0.00 0.00 0.00 4.40
685 687 3.503363 AGTACTGTTGTGTCAATGCCATG 59.497 43.478 0.00 0.00 0.00 3.66
686 688 2.585330 ACTGTTGTGTCAATGCCATGA 58.415 42.857 0.00 0.00 0.00 3.07
687 689 3.159472 ACTGTTGTGTCAATGCCATGAT 58.841 40.909 0.00 0.00 0.00 2.45
688 690 4.334552 ACTGTTGTGTCAATGCCATGATA 58.665 39.130 0.00 0.00 0.00 2.15
689 691 4.766373 ACTGTTGTGTCAATGCCATGATAA 59.234 37.500 0.00 0.00 0.00 1.75
690 692 5.243507 ACTGTTGTGTCAATGCCATGATAAA 59.756 36.000 0.00 0.00 0.00 1.40
691 693 6.094193 TGTTGTGTCAATGCCATGATAAAA 57.906 33.333 0.00 0.00 0.00 1.52
692 694 6.699366 TGTTGTGTCAATGCCATGATAAAAT 58.301 32.000 0.00 0.00 0.00 1.82
693 695 7.160049 TGTTGTGTCAATGCCATGATAAAATT 58.840 30.769 0.00 0.00 0.00 1.82
694 696 7.331440 TGTTGTGTCAATGCCATGATAAAATTC 59.669 33.333 0.00 0.00 0.00 2.17
695 697 7.172868 TGTGTCAATGCCATGATAAAATTCT 57.827 32.000 0.00 0.00 0.00 2.40
696 698 8.291191 TGTGTCAATGCCATGATAAAATTCTA 57.709 30.769 0.00 0.00 0.00 2.10
783 785 6.016555 ACAAAAGCCAACTATTAAGTCCCAT 58.983 36.000 0.00 0.00 33.75 4.00
862 864 3.233980 TCAGCACAGCCGGTCAGT 61.234 61.111 1.90 0.00 0.00 3.41
1461 2688 3.694394 TTGCCGTTCGCGTTCGAC 61.694 61.111 21.81 13.92 45.43 4.20
1751 2978 1.071128 GCAGCTGGAGATAGGGCAG 59.929 63.158 17.12 0.00 0.00 4.85
1818 3057 8.678199 TCTTTCTTTCTTTCTTTCTTTCTGGTC 58.322 33.333 0.00 0.00 0.00 4.02
2102 3357 1.285950 GCGGTTTCTCTGGTTTGCC 59.714 57.895 0.00 0.00 0.00 4.52
2182 3437 2.393764 GGTAACAACAATGCACTGCAC 58.606 47.619 5.67 0.00 43.04 4.57
2183 3438 2.223688 GGTAACAACAATGCACTGCACA 60.224 45.455 5.67 0.00 43.04 4.57
2184 3439 2.894763 AACAACAATGCACTGCACAT 57.105 40.000 5.67 0.00 43.04 3.21
2563 4519 1.065126 GGCTAGGACCAGATTTGCACT 60.065 52.381 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.691609 GGTCTTACATTTTGAGGCAGAGG 59.308 47.826 0.00 0.00 0.00 3.69
24 25 6.895756 TGCCCTCTCTCTAGATAGTGTAAAAA 59.104 38.462 5.15 0.00 0.00 1.94
25 26 6.432581 TGCCCTCTCTCTAGATAGTGTAAAA 58.567 40.000 5.15 0.00 0.00 1.52
26 27 6.014771 TGCCCTCTCTCTAGATAGTGTAAA 57.985 41.667 5.15 0.00 0.00 2.01
27 28 5.648330 TGCCCTCTCTCTAGATAGTGTAA 57.352 43.478 5.15 0.00 0.00 2.41
28 29 5.515710 CCATGCCCTCTCTCTAGATAGTGTA 60.516 48.000 5.15 0.00 0.00 2.90
29 30 4.406456 CATGCCCTCTCTCTAGATAGTGT 58.594 47.826 5.15 0.00 0.00 3.55
30 31 3.763360 CCATGCCCTCTCTCTAGATAGTG 59.237 52.174 5.15 3.13 0.00 2.74
31 32 3.817567 GCCATGCCCTCTCTCTAGATAGT 60.818 52.174 5.15 0.00 0.00 2.12
32 33 2.760092 GCCATGCCCTCTCTCTAGATAG 59.240 54.545 0.00 0.00 0.00 2.08
36 37 2.300956 TAGCCATGCCCTCTCTCTAG 57.699 55.000 0.00 0.00 0.00 2.43
37 38 2.775490 TTAGCCATGCCCTCTCTCTA 57.225 50.000 0.00 0.00 0.00 2.43
41 42 2.027385 CCTTTTTAGCCATGCCCTCTC 58.973 52.381 0.00 0.00 0.00 3.20
48 49 7.552458 AAAGTTTTTGACCTTTTTAGCCATG 57.448 32.000 0.00 0.00 0.00 3.66
67 68 7.739498 ATGGTATGTACGAGAAACAAAAGTT 57.261 32.000 0.00 0.00 0.00 2.66
69 70 9.702726 CATAATGGTATGTACGAGAAACAAAAG 57.297 33.333 0.00 0.00 33.65 2.27
109 110 1.059264 GTCGTACGCTTTGATCTGTGC 59.941 52.381 11.24 0.00 0.00 4.57
187 189 0.114954 ATCAAGGCTCTGGGGCAAAA 59.885 50.000 3.17 0.00 43.56 2.44
188 190 0.998928 TATCAAGGCTCTGGGGCAAA 59.001 50.000 3.17 0.00 43.56 3.68
227 229 1.583495 GGCCTGGAAAACGTACAGCC 61.583 60.000 0.00 0.00 0.00 4.85
270 272 4.093952 CTTCGGCGCAAGGTGCTG 62.094 66.667 10.83 4.28 45.59 4.41
271 273 2.521958 ATACTTCGGCGCAAGGTGCT 62.522 55.000 10.83 0.00 42.25 4.40
272 274 2.106683 ATACTTCGGCGCAAGGTGC 61.107 57.895 10.83 0.00 40.69 5.01
273 275 0.739462 TCATACTTCGGCGCAAGGTG 60.739 55.000 10.83 9.00 38.28 4.00
274 276 0.460284 CTCATACTTCGGCGCAAGGT 60.460 55.000 10.83 5.82 38.28 3.50
275 277 1.766143 GCTCATACTTCGGCGCAAGG 61.766 60.000 10.83 0.00 38.28 3.61
276 278 1.083806 TGCTCATACTTCGGCGCAAG 61.084 55.000 10.83 7.97 43.44 4.01
277 279 1.079474 TGCTCATACTTCGGCGCAA 60.079 52.632 10.83 0.00 0.00 4.85
278 280 1.519234 CTGCTCATACTTCGGCGCA 60.519 57.895 10.83 0.00 0.00 6.09
279 281 2.875786 GCTGCTCATACTTCGGCGC 61.876 63.158 0.00 0.00 0.00 6.53
280 282 1.227089 AGCTGCTCATACTTCGGCG 60.227 57.895 0.00 0.00 37.20 6.46
281 283 0.460987 ACAGCTGCTCATACTTCGGC 60.461 55.000 15.27 0.00 0.00 5.54
282 284 2.099921 ACTACAGCTGCTCATACTTCGG 59.900 50.000 15.27 0.00 0.00 4.30
283 285 3.111838 CACTACAGCTGCTCATACTTCG 58.888 50.000 15.27 0.00 0.00 3.79
284 286 2.863137 GCACTACAGCTGCTCATACTTC 59.137 50.000 15.27 0.00 0.00 3.01
285 287 2.499289 AGCACTACAGCTGCTCATACTT 59.501 45.455 15.27 0.00 41.27 2.24
286 288 2.106566 AGCACTACAGCTGCTCATACT 58.893 47.619 15.27 1.45 41.27 2.12
287 289 2.593346 AGCACTACAGCTGCTCATAC 57.407 50.000 15.27 0.00 41.27 2.39
288 290 2.035193 GCTAGCACTACAGCTGCTCATA 59.965 50.000 15.27 0.00 46.11 2.15
289 291 1.202510 GCTAGCACTACAGCTGCTCAT 60.203 52.381 15.27 0.00 46.11 2.90
290 292 0.174389 GCTAGCACTACAGCTGCTCA 59.826 55.000 15.27 0.00 46.11 4.26
291 293 0.174389 TGCTAGCACTACAGCTGCTC 59.826 55.000 14.93 0.00 46.11 4.26
292 294 0.175302 CTGCTAGCACTACAGCTGCT 59.825 55.000 14.93 8.26 46.11 4.24
293 295 0.108424 ACTGCTAGCACTACAGCTGC 60.108 55.000 14.93 0.00 46.11 5.25
294 296 1.470632 GGACTGCTAGCACTACAGCTG 60.471 57.143 14.93 13.48 46.11 4.24
296 298 0.820871 AGGACTGCTAGCACTACAGC 59.179 55.000 14.93 0.43 38.31 4.40
297 299 2.575694 CAGGACTGCTAGCACTACAG 57.424 55.000 14.93 6.32 37.45 2.74
310 312 2.350514 GCAAGAGGCAGCAGGACT 59.649 61.111 0.00 0.00 43.97 3.85
319 321 1.079612 GCAACCCAATGCAAGAGGC 60.080 57.895 0.00 0.00 45.70 4.70
326 328 0.681175 AACAGGAAGCAACCCAATGC 59.319 50.000 0.00 0.00 46.78 3.56
327 329 2.242043 AGAACAGGAAGCAACCCAATG 58.758 47.619 0.00 0.00 0.00 2.82
328 330 2.683211 AGAACAGGAAGCAACCCAAT 57.317 45.000 0.00 0.00 0.00 3.16
329 331 2.173782 TGTAGAACAGGAAGCAACCCAA 59.826 45.455 0.00 0.00 0.00 4.12
330 332 1.771854 TGTAGAACAGGAAGCAACCCA 59.228 47.619 0.00 0.00 0.00 4.51
331 333 2.552743 GTTGTAGAACAGGAAGCAACCC 59.447 50.000 0.00 0.00 32.59 4.11
332 334 2.552743 GGTTGTAGAACAGGAAGCAACC 59.447 50.000 5.00 8.24 45.59 3.77
333 335 2.552743 GGGTTGTAGAACAGGAAGCAAC 59.447 50.000 5.00 0.00 36.47 4.17
334 336 2.441750 AGGGTTGTAGAACAGGAAGCAA 59.558 45.455 5.00 0.00 33.27 3.91
335 337 2.054799 AGGGTTGTAGAACAGGAAGCA 58.945 47.619 5.00 0.00 33.27 3.91
336 338 2.814336 CAAGGGTTGTAGAACAGGAAGC 59.186 50.000 5.00 0.00 33.27 3.86
337 339 4.086706 ACAAGGGTTGTAGAACAGGAAG 57.913 45.455 5.00 0.00 43.27 3.46
347 349 2.231964 CGTACAGCCTACAAGGGTTGTA 59.768 50.000 6.20 6.20 45.25 2.41
348 350 1.001633 CGTACAGCCTACAAGGGTTGT 59.998 52.381 7.98 7.98 45.25 3.32
349 351 1.001633 ACGTACAGCCTACAAGGGTTG 59.998 52.381 0.00 0.00 45.25 3.77
350 352 1.345063 ACGTACAGCCTACAAGGGTT 58.655 50.000 0.00 0.00 45.25 4.11
352 354 2.467566 AAACGTACAGCCTACAAGGG 57.532 50.000 0.00 0.00 35.37 3.95
353 355 2.740447 GGAAAACGTACAGCCTACAAGG 59.260 50.000 0.00 0.00 38.80 3.61
354 356 3.395639 TGGAAAACGTACAGCCTACAAG 58.604 45.455 0.00 0.00 0.00 3.16
355 357 3.395639 CTGGAAAACGTACAGCCTACAA 58.604 45.455 0.00 0.00 0.00 2.41
356 358 2.289195 CCTGGAAAACGTACAGCCTACA 60.289 50.000 0.00 0.00 0.00 2.74
357 359 2.344025 CCTGGAAAACGTACAGCCTAC 58.656 52.381 0.00 0.00 0.00 3.18
358 360 1.338389 GCCTGGAAAACGTACAGCCTA 60.338 52.381 0.00 0.00 0.00 3.93
359 361 0.605589 GCCTGGAAAACGTACAGCCT 60.606 55.000 0.00 0.00 0.00 4.58
360 362 1.583495 GGCCTGGAAAACGTACAGCC 61.583 60.000 0.00 0.00 0.00 4.85
361 363 0.887387 TGGCCTGGAAAACGTACAGC 60.887 55.000 3.32 0.00 0.00 4.40
362 364 1.156736 CTGGCCTGGAAAACGTACAG 58.843 55.000 3.32 0.00 0.00 2.74
363 365 0.887387 GCTGGCCTGGAAAACGTACA 60.887 55.000 12.06 0.00 0.00 2.90
364 366 0.887387 TGCTGGCCTGGAAAACGTAC 60.887 55.000 12.06 0.00 0.00 3.67
365 367 0.037590 ATGCTGGCCTGGAAAACGTA 59.962 50.000 8.15 0.00 0.00 3.57
366 368 0.827507 AATGCTGGCCTGGAAAACGT 60.828 50.000 8.15 0.00 0.00 3.99
367 369 1.173043 TAATGCTGGCCTGGAAAACG 58.827 50.000 8.15 0.00 0.00 3.60
368 370 2.825532 TCTTAATGCTGGCCTGGAAAAC 59.174 45.455 8.15 0.00 0.00 2.43
369 371 3.091545 CTCTTAATGCTGGCCTGGAAAA 58.908 45.455 8.15 5.14 0.00 2.29
370 372 2.726821 CTCTTAATGCTGGCCTGGAAA 58.273 47.619 8.15 0.00 0.00 3.13
371 373 1.683011 GCTCTTAATGCTGGCCTGGAA 60.683 52.381 8.15 0.00 0.00 3.53
372 374 0.107017 GCTCTTAATGCTGGCCTGGA 60.107 55.000 12.06 9.31 0.00 3.86
373 375 0.106819 AGCTCTTAATGCTGGCCTGG 60.107 55.000 12.06 1.66 39.56 4.45
374 376 3.491208 AGCTCTTAATGCTGGCCTG 57.509 52.632 3.32 4.26 39.56 4.85
380 382 2.402564 TCTAGCCCAGCTCTTAATGCT 58.597 47.619 0.00 0.00 40.44 3.79
381 383 2.918712 TCTAGCCCAGCTCTTAATGC 57.081 50.000 0.00 0.00 40.44 3.56
382 384 4.965814 TGAATCTAGCCCAGCTCTTAATG 58.034 43.478 0.00 0.00 40.44 1.90
383 385 4.504689 GCTGAATCTAGCCCAGCTCTTAAT 60.505 45.833 17.71 0.00 46.96 1.40
384 386 3.181461 GCTGAATCTAGCCCAGCTCTTAA 60.181 47.826 17.71 0.00 46.96 1.85
385 387 2.366916 GCTGAATCTAGCCCAGCTCTTA 59.633 50.000 17.71 0.00 46.96 2.10
386 388 1.140652 GCTGAATCTAGCCCAGCTCTT 59.859 52.381 17.71 0.00 46.96 2.85
387 389 0.758123 GCTGAATCTAGCCCAGCTCT 59.242 55.000 17.71 0.00 46.96 4.09
388 390 3.304041 GCTGAATCTAGCCCAGCTC 57.696 57.895 17.71 0.00 46.96 4.09
391 393 0.835941 AGGTGCTGAATCTAGCCCAG 59.164 55.000 0.00 0.00 43.02 4.45
392 394 1.065199 CAAGGTGCTGAATCTAGCCCA 60.065 52.381 0.00 0.00 43.02 5.36
393 395 1.673168 CAAGGTGCTGAATCTAGCCC 58.327 55.000 0.00 0.00 43.02 5.19
394 396 1.020437 GCAAGGTGCTGAATCTAGCC 58.980 55.000 0.00 0.00 43.02 3.93
395 397 0.654683 CGCAAGGTGCTGAATCTAGC 59.345 55.000 0.00 0.00 42.25 3.42
396 398 0.654683 GCGCAAGGTGCTGAATCTAG 59.345 55.000 0.30 0.00 42.25 2.43
397 399 0.744414 GGCGCAAGGTGCTGAATCTA 60.744 55.000 10.83 0.00 42.25 1.98
398 400 2.042831 GGCGCAAGGTGCTGAATCT 61.043 57.895 10.83 0.00 42.25 2.40
399 401 2.486966 GGCGCAAGGTGCTGAATC 59.513 61.111 10.83 0.00 42.25 2.52
400 402 3.434319 CGGCGCAAGGTGCTGAAT 61.434 61.111 10.83 0.00 46.98 2.57
403 405 4.093952 CTTCGGCGCAAGGTGCTG 62.094 66.667 10.83 4.28 45.59 4.41
404 406 2.521958 ATACTTCGGCGCAAGGTGCT 62.522 55.000 10.83 0.00 42.25 4.40
405 407 2.106683 ATACTTCGGCGCAAGGTGC 61.107 57.895 10.83 0.00 40.69 5.01
406 408 0.739462 TCATACTTCGGCGCAAGGTG 60.739 55.000 10.83 9.00 38.28 4.00
407 409 0.460284 CTCATACTTCGGCGCAAGGT 60.460 55.000 10.83 5.82 38.28 3.50
408 410 1.766143 GCTCATACTTCGGCGCAAGG 61.766 60.000 10.83 0.00 38.28 3.61
409 411 1.083806 TGCTCATACTTCGGCGCAAG 61.084 55.000 10.83 7.97 43.44 4.01
410 412 1.079474 TGCTCATACTTCGGCGCAA 60.079 52.632 10.83 0.00 0.00 4.85
411 413 1.519234 CTGCTCATACTTCGGCGCA 60.519 57.895 10.83 0.00 0.00 6.09
412 414 2.875786 GCTGCTCATACTTCGGCGC 61.876 63.158 0.00 0.00 0.00 6.53
413 415 1.227089 AGCTGCTCATACTTCGGCG 60.227 57.895 0.00 0.00 37.20 6.46
414 416 0.460987 ACAGCTGCTCATACTTCGGC 60.461 55.000 15.27 0.00 0.00 5.54
415 417 2.099921 ACTACAGCTGCTCATACTTCGG 59.900 50.000 15.27 0.00 0.00 4.30
416 418 3.111838 CACTACAGCTGCTCATACTTCG 58.888 50.000 15.27 0.00 0.00 3.79
417 419 2.863137 GCACTACAGCTGCTCATACTTC 59.137 50.000 15.27 0.00 0.00 3.01
418 420 2.499289 AGCACTACAGCTGCTCATACTT 59.501 45.455 15.27 0.00 41.27 2.24
419 421 2.106566 AGCACTACAGCTGCTCATACT 58.893 47.619 15.27 1.45 41.27 2.12
420 422 2.593346 AGCACTACAGCTGCTCATAC 57.407 50.000 15.27 0.00 41.27 2.39
421 423 2.035193 GCTAGCACTACAGCTGCTCATA 59.965 50.000 15.27 0.00 46.11 2.15
422 424 1.202510 GCTAGCACTACAGCTGCTCAT 60.203 52.381 15.27 0.00 46.11 2.90
423 425 0.174389 GCTAGCACTACAGCTGCTCA 59.826 55.000 15.27 0.00 46.11 4.26
424 426 0.174389 TGCTAGCACTACAGCTGCTC 59.826 55.000 14.93 0.00 46.11 4.26
425 427 0.175302 CTGCTAGCACTACAGCTGCT 59.825 55.000 14.93 8.26 46.11 4.24
426 428 0.108424 ACTGCTAGCACTACAGCTGC 60.108 55.000 14.93 0.00 46.11 5.25
427 429 1.470632 GGACTGCTAGCACTACAGCTG 60.471 57.143 14.93 13.48 46.11 4.24
429 431 0.820871 AGGACTGCTAGCACTACAGC 59.179 55.000 14.93 0.43 38.31 4.40
430 432 2.575694 CAGGACTGCTAGCACTACAG 57.424 55.000 14.93 6.32 37.45 2.74
443 445 2.350514 GCAAGAGGCAGCAGGACT 59.649 61.111 0.00 0.00 43.97 3.85
452 454 1.079612 GCAACCCAATGCAAGAGGC 60.080 57.895 0.00 0.00 45.70 4.70
459 461 0.681175 AACAGGAAGCAACCCAATGC 59.319 50.000 0.00 0.00 46.78 3.56
460 462 2.629617 AGAAACAGGAAGCAACCCAATG 59.370 45.455 0.00 0.00 0.00 2.82
461 463 2.893489 GAGAAACAGGAAGCAACCCAAT 59.107 45.455 0.00 0.00 0.00 3.16
462 464 2.306847 GAGAAACAGGAAGCAACCCAA 58.693 47.619 0.00 0.00 0.00 4.12
463 465 1.214175 TGAGAAACAGGAAGCAACCCA 59.786 47.619 0.00 0.00 0.00 4.51
464 466 1.882623 CTGAGAAACAGGAAGCAACCC 59.117 52.381 0.00 0.00 42.39 4.11
465 467 1.268079 GCTGAGAAACAGGAAGCAACC 59.732 52.381 0.00 0.00 45.82 3.77
466 468 1.268079 GGCTGAGAAACAGGAAGCAAC 59.732 52.381 0.00 0.00 45.82 4.17
467 469 1.609208 GGCTGAGAAACAGGAAGCAA 58.391 50.000 0.00 0.00 45.82 3.91
468 470 0.250901 GGGCTGAGAAACAGGAAGCA 60.251 55.000 0.00 0.00 45.82 3.91
469 471 0.250901 TGGGCTGAGAAACAGGAAGC 60.251 55.000 0.00 0.00 45.82 3.86
470 472 2.026449 AGATGGGCTGAGAAACAGGAAG 60.026 50.000 0.00 0.00 45.82 3.46
471 473 1.988107 AGATGGGCTGAGAAACAGGAA 59.012 47.619 0.00 0.00 45.82 3.36
472 474 1.661463 AGATGGGCTGAGAAACAGGA 58.339 50.000 0.00 0.00 45.82 3.86
487 489 4.324267 TGCTGAGATATTGCCATCAGATG 58.676 43.478 3.04 3.04 41.35 2.90
488 490 4.635699 TGCTGAGATATTGCCATCAGAT 57.364 40.909 5.28 0.00 41.35 2.90
489 491 4.635699 ATGCTGAGATATTGCCATCAGA 57.364 40.909 5.28 0.00 41.35 3.27
490 492 4.519350 ACAATGCTGAGATATTGCCATCAG 59.481 41.667 8.99 0.00 41.68 2.90
491 493 4.466827 ACAATGCTGAGATATTGCCATCA 58.533 39.130 8.99 0.00 37.71 3.07
492 494 5.220381 CAACAATGCTGAGATATTGCCATC 58.780 41.667 8.99 0.00 37.71 3.51
493 495 5.196341 CAACAATGCTGAGATATTGCCAT 57.804 39.130 8.99 0.00 37.71 4.40
494 496 4.642445 CAACAATGCTGAGATATTGCCA 57.358 40.909 8.99 0.00 37.71 4.92
508 510 3.192001 AGCAGTGGTTATGAGCAACAATG 59.808 43.478 0.00 0.00 34.60 2.82
509 511 3.192001 CAGCAGTGGTTATGAGCAACAAT 59.808 43.478 0.00 0.00 34.60 2.71
510 512 2.553602 CAGCAGTGGTTATGAGCAACAA 59.446 45.455 0.00 0.00 34.60 2.83
511 513 2.153645 CAGCAGTGGTTATGAGCAACA 58.846 47.619 0.00 0.00 34.60 3.33
512 514 1.135575 GCAGCAGTGGTTATGAGCAAC 60.136 52.381 0.00 0.00 34.60 4.17
513 515 1.167851 GCAGCAGTGGTTATGAGCAA 58.832 50.000 0.00 0.00 34.60 3.91
514 516 0.036590 TGCAGCAGTGGTTATGAGCA 59.963 50.000 0.00 0.59 0.00 4.26
515 517 1.332997 GATGCAGCAGTGGTTATGAGC 59.667 52.381 0.00 0.00 0.00 4.26
516 518 2.612672 CTGATGCAGCAGTGGTTATGAG 59.387 50.000 23.67 0.00 0.00 2.90
517 519 2.236893 TCTGATGCAGCAGTGGTTATGA 59.763 45.455 29.56 7.02 37.20 2.15
518 520 2.635714 TCTGATGCAGCAGTGGTTATG 58.364 47.619 29.56 4.50 37.20 1.90
519 521 3.354948 TTCTGATGCAGCAGTGGTTAT 57.645 42.857 29.56 0.00 37.20 1.89
520 522 2.857186 TTCTGATGCAGCAGTGGTTA 57.143 45.000 29.56 9.06 37.20 2.85
521 523 2.211250 ATTCTGATGCAGCAGTGGTT 57.789 45.000 29.56 11.59 37.20 3.67
522 524 2.211250 AATTCTGATGCAGCAGTGGT 57.789 45.000 29.56 14.94 37.20 4.16
523 525 2.416836 CCAAATTCTGATGCAGCAGTGG 60.417 50.000 29.56 24.74 37.20 4.00
524 526 2.230508 ACCAAATTCTGATGCAGCAGTG 59.769 45.455 29.56 20.29 37.20 3.66
525 527 2.522185 ACCAAATTCTGATGCAGCAGT 58.478 42.857 29.56 10.63 37.20 4.40
526 528 3.192844 AGAACCAAATTCTGATGCAGCAG 59.807 43.478 25.84 25.84 46.44 4.24
527 529 3.159472 AGAACCAAATTCTGATGCAGCA 58.841 40.909 3.82 3.82 46.44 4.41
528 530 3.863142 AGAACCAAATTCTGATGCAGC 57.137 42.857 0.00 0.00 46.44 5.25
537 539 4.528206 ACATCTTGGGGAAGAACCAAATTC 59.472 41.667 0.00 0.00 46.54 2.17
538 540 4.492646 ACATCTTGGGGAAGAACCAAATT 58.507 39.130 0.00 0.00 46.54 1.82
539 541 4.132122 ACATCTTGGGGAAGAACCAAAT 57.868 40.909 0.00 0.00 46.54 2.32
540 542 3.611025 ACATCTTGGGGAAGAACCAAA 57.389 42.857 0.00 0.00 46.54 3.28
541 543 3.655777 AGTACATCTTGGGGAAGAACCAA 59.344 43.478 0.00 0.00 45.25 3.67
542 544 3.256704 AGTACATCTTGGGGAAGAACCA 58.743 45.455 0.00 0.00 41.20 3.67
543 545 3.519913 AGAGTACATCTTGGGGAAGAACC 59.480 47.826 0.00 0.00 32.99 3.62
544 546 4.828072 AGAGTACATCTTGGGGAAGAAC 57.172 45.455 0.00 0.00 32.99 3.01
554 556 8.114651 GCAGATTCTGGCTTAAGAGTACATCTT 61.115 40.741 15.28 10.91 40.57 2.40
555 557 6.685116 GCAGATTCTGGCTTAAGAGTACATCT 60.685 42.308 15.28 4.11 33.77 2.90
556 558 5.465056 GCAGATTCTGGCTTAAGAGTACATC 59.535 44.000 15.28 1.83 31.21 3.06
557 559 5.363939 GCAGATTCTGGCTTAAGAGTACAT 58.636 41.667 15.28 0.00 31.21 2.29
558 560 4.759782 GCAGATTCTGGCTTAAGAGTACA 58.240 43.478 15.28 0.00 31.21 2.90
570 572 2.123982 GCTGGGGGCAGATTCTGG 60.124 66.667 15.28 0.00 41.35 3.86
571 573 1.035932 CAAGCTGGGGGCAGATTCTG 61.036 60.000 9.40 9.40 44.79 3.02
572 574 1.305623 CAAGCTGGGGGCAGATTCT 59.694 57.895 0.00 0.00 44.79 2.40
573 575 1.755783 CCAAGCTGGGGGCAGATTC 60.756 63.158 0.00 0.00 44.79 2.52
574 576 1.587522 ATCCAAGCTGGGGGCAGATT 61.588 55.000 7.48 0.00 44.79 2.40
575 577 2.011044 ATCCAAGCTGGGGGCAGAT 61.011 57.895 7.48 0.00 44.79 2.90
576 578 2.614969 ATCCAAGCTGGGGGCAGA 60.615 61.111 7.48 0.00 44.79 4.26
577 579 2.441532 CATCCAAGCTGGGGGCAG 60.442 66.667 7.48 0.00 44.79 4.85
578 580 4.764771 GCATCCAAGCTGGGGGCA 62.765 66.667 17.00 0.00 44.79 5.36
580 582 3.605412 TTGGCATCCAAGCTGGGGG 62.605 63.158 7.48 0.84 38.75 5.40
581 583 1.193462 TTTTGGCATCCAAGCTGGGG 61.193 55.000 7.48 2.30 44.84 4.96
582 584 0.037046 GTTTTGGCATCCAAGCTGGG 60.037 55.000 0.00 0.00 44.84 4.45
583 585 0.037046 GGTTTTGGCATCCAAGCTGG 60.037 55.000 0.00 0.00 44.84 4.85
584 586 0.388907 CGGTTTTGGCATCCAAGCTG 60.389 55.000 0.00 0.00 44.84 4.24
585 587 0.539438 TCGGTTTTGGCATCCAAGCT 60.539 50.000 0.00 0.00 44.84 3.74
586 588 0.316841 TTCGGTTTTGGCATCCAAGC 59.683 50.000 0.00 0.00 44.84 4.01
587 589 1.669795 GCTTCGGTTTTGGCATCCAAG 60.670 52.381 0.00 0.87 44.84 3.61
588 590 0.316841 GCTTCGGTTTTGGCATCCAA 59.683 50.000 0.00 0.00 42.29 3.53
589 591 0.539438 AGCTTCGGTTTTGGCATCCA 60.539 50.000 0.00 0.00 0.00 3.41
590 592 0.109132 CAGCTTCGGTTTTGGCATCC 60.109 55.000 0.00 0.00 0.00 3.51
591 593 0.733909 GCAGCTTCGGTTTTGGCATC 60.734 55.000 0.00 0.00 0.00 3.91
592 594 1.290009 GCAGCTTCGGTTTTGGCAT 59.710 52.632 0.00 0.00 0.00 4.40
593 595 2.074230 CTGCAGCTTCGGTTTTGGCA 62.074 55.000 0.00 0.00 0.00 4.92
594 596 1.372128 CTGCAGCTTCGGTTTTGGC 60.372 57.895 0.00 0.00 0.00 4.52
595 597 1.372128 GCTGCAGCTTCGGTTTTGG 60.372 57.895 31.33 0.00 38.21 3.28
596 598 0.662374 CTGCTGCAGCTTCGGTTTTG 60.662 55.000 36.61 12.99 42.66 2.44
597 599 1.656441 CTGCTGCAGCTTCGGTTTT 59.344 52.632 36.61 0.00 42.66 2.43
598 600 3.348236 CTGCTGCAGCTTCGGTTT 58.652 55.556 36.61 0.00 42.66 3.27
616 618 3.442625 TGATCTTGATCCAGCTGCAAAAG 59.557 43.478 8.66 9.04 0.00 2.27
617 619 3.423749 TGATCTTGATCCAGCTGCAAAA 58.576 40.909 8.66 0.00 0.00 2.44
618 620 3.076079 TGATCTTGATCCAGCTGCAAA 57.924 42.857 8.66 0.00 0.00 3.68
619 621 2.793288 TGATCTTGATCCAGCTGCAA 57.207 45.000 8.66 6.64 0.00 4.08
620 622 4.635699 ATATGATCTTGATCCAGCTGCA 57.364 40.909 8.66 0.00 0.00 4.41
621 623 5.706369 AGAAATATGATCTTGATCCAGCTGC 59.294 40.000 8.66 0.00 0.00 5.25
622 624 6.348622 GCAGAAATATGATCTTGATCCAGCTG 60.349 42.308 6.78 6.78 0.00 4.24
623 625 5.706369 GCAGAAATATGATCTTGATCCAGCT 59.294 40.000 7.99 0.00 0.00 4.24
624 626 5.472478 TGCAGAAATATGATCTTGATCCAGC 59.528 40.000 7.99 1.80 0.00 4.85
625 627 6.711194 AGTGCAGAAATATGATCTTGATCCAG 59.289 38.462 7.99 0.00 0.00 3.86
626 628 6.598503 AGTGCAGAAATATGATCTTGATCCA 58.401 36.000 7.99 0.00 0.00 3.41
627 629 7.507733 AAGTGCAGAAATATGATCTTGATCC 57.492 36.000 7.99 0.00 0.00 3.36
628 630 8.404000 ACAAAGTGCAGAAATATGATCTTGATC 58.596 33.333 3.82 3.82 0.00 2.92
629 631 8.289939 ACAAAGTGCAGAAATATGATCTTGAT 57.710 30.769 0.00 0.00 0.00 2.57
630 632 7.391275 TGACAAAGTGCAGAAATATGATCTTGA 59.609 33.333 0.00 0.00 0.00 3.02
631 633 7.532571 TGACAAAGTGCAGAAATATGATCTTG 58.467 34.615 0.00 0.00 0.00 3.02
632 634 7.692460 TGACAAAGTGCAGAAATATGATCTT 57.308 32.000 0.00 0.00 0.00 2.40
633 635 7.555195 TGATGACAAAGTGCAGAAATATGATCT 59.445 33.333 0.00 0.00 0.00 2.75
634 636 7.700505 TGATGACAAAGTGCAGAAATATGATC 58.299 34.615 0.00 0.00 0.00 2.92
635 637 7.634671 TGATGACAAAGTGCAGAAATATGAT 57.365 32.000 0.00 0.00 0.00 2.45
636 638 7.634671 ATGATGACAAAGTGCAGAAATATGA 57.365 32.000 0.00 0.00 0.00 2.15
637 639 8.697846 AAATGATGACAAAGTGCAGAAATATG 57.302 30.769 0.00 0.00 0.00 1.78
639 641 9.013229 ACTAAATGATGACAAAGTGCAGAAATA 57.987 29.630 0.00 0.00 0.00 1.40
640 642 7.889469 ACTAAATGATGACAAAGTGCAGAAAT 58.111 30.769 0.00 0.00 0.00 2.17
641 643 7.275888 ACTAAATGATGACAAAGTGCAGAAA 57.724 32.000 0.00 0.00 0.00 2.52
642 644 6.882610 ACTAAATGATGACAAAGTGCAGAA 57.117 33.333 0.00 0.00 0.00 3.02
643 645 7.118245 CAGTACTAAATGATGACAAAGTGCAGA 59.882 37.037 0.00 0.00 0.00 4.26
644 646 7.095060 ACAGTACTAAATGATGACAAAGTGCAG 60.095 37.037 0.00 0.00 0.00 4.41
645 647 6.710295 ACAGTACTAAATGATGACAAAGTGCA 59.290 34.615 0.00 0.00 0.00 4.57
646 648 7.133891 ACAGTACTAAATGATGACAAAGTGC 57.866 36.000 0.00 0.00 0.00 4.40
647 649 8.559536 ACAACAGTACTAAATGATGACAAAGTG 58.440 33.333 0.00 0.00 0.00 3.16
648 650 8.559536 CACAACAGTACTAAATGATGACAAAGT 58.440 33.333 0.00 0.00 0.00 2.66
649 651 8.559536 ACACAACAGTACTAAATGATGACAAAG 58.440 33.333 0.00 0.00 0.00 2.77
650 652 8.445275 ACACAACAGTACTAAATGATGACAAA 57.555 30.769 0.00 0.00 0.00 2.83
651 653 7.713073 TGACACAACAGTACTAAATGATGACAA 59.287 33.333 0.00 0.00 0.00 3.18
652 654 7.213678 TGACACAACAGTACTAAATGATGACA 58.786 34.615 0.00 1.58 0.00 3.58
653 655 7.652300 TGACACAACAGTACTAAATGATGAC 57.348 36.000 0.00 0.00 0.00 3.06
654 656 8.720562 CATTGACACAACAGTACTAAATGATGA 58.279 33.333 0.00 0.00 0.00 2.92
655 657 7.482743 GCATTGACACAACAGTACTAAATGATG 59.517 37.037 0.00 0.00 0.00 3.07
656 658 7.362056 GGCATTGACACAACAGTACTAAATGAT 60.362 37.037 0.00 0.00 0.00 2.45
657 659 6.072728 GGCATTGACACAACAGTACTAAATGA 60.073 38.462 0.00 0.00 0.00 2.57
658 660 6.086222 GGCATTGACACAACAGTACTAAATG 58.914 40.000 0.00 0.00 0.00 2.32
659 661 5.767665 TGGCATTGACACAACAGTACTAAAT 59.232 36.000 0.00 0.00 0.00 1.40
660 662 5.126779 TGGCATTGACACAACAGTACTAAA 58.873 37.500 0.00 0.00 0.00 1.85
661 663 4.709250 TGGCATTGACACAACAGTACTAA 58.291 39.130 0.00 0.00 0.00 2.24
662 664 4.344359 TGGCATTGACACAACAGTACTA 57.656 40.909 0.00 0.00 0.00 1.82
663 665 3.207265 TGGCATTGACACAACAGTACT 57.793 42.857 0.00 0.00 0.00 2.73
664 666 3.501828 TCATGGCATTGACACAACAGTAC 59.498 43.478 0.00 0.00 0.00 2.73
665 667 3.749226 TCATGGCATTGACACAACAGTA 58.251 40.909 0.00 0.00 0.00 2.74
666 668 2.585330 TCATGGCATTGACACAACAGT 58.415 42.857 0.00 0.00 0.00 3.55
667 669 3.861276 ATCATGGCATTGACACAACAG 57.139 42.857 0.00 0.00 0.00 3.16
668 670 5.718724 TTTATCATGGCATTGACACAACA 57.281 34.783 0.00 0.00 0.00 3.33
669 671 7.546667 AGAATTTTATCATGGCATTGACACAAC 59.453 33.333 0.00 0.00 0.00 3.32
670 672 7.613585 AGAATTTTATCATGGCATTGACACAA 58.386 30.769 0.00 0.00 0.00 3.33
671 673 7.172868 AGAATTTTATCATGGCATTGACACA 57.827 32.000 0.00 0.00 0.00 3.72
672 674 9.188588 CATAGAATTTTATCATGGCATTGACAC 57.811 33.333 0.00 0.00 0.00 3.67
673 675 9.134055 TCATAGAATTTTATCATGGCATTGACA 57.866 29.630 0.00 0.00 0.00 3.58
674 676 9.622004 CTCATAGAATTTTATCATGGCATTGAC 57.378 33.333 0.00 0.00 0.00 3.18
675 677 8.799367 CCTCATAGAATTTTATCATGGCATTGA 58.201 33.333 0.00 0.00 0.00 2.57
676 678 8.582437 ACCTCATAGAATTTTATCATGGCATTG 58.418 33.333 0.00 0.00 0.00 2.82
677 679 8.716674 ACCTCATAGAATTTTATCATGGCATT 57.283 30.769 0.00 0.00 0.00 3.56
678 680 9.812347 TTACCTCATAGAATTTTATCATGGCAT 57.188 29.630 0.00 0.00 0.00 4.40
679 681 9.812347 ATTACCTCATAGAATTTTATCATGGCA 57.188 29.630 0.00 0.00 0.00 4.92
687 689 9.778741 CTGGTGCTATTACCTCATAGAATTTTA 57.221 33.333 0.00 0.00 41.43 1.52
688 690 7.721399 CCTGGTGCTATTACCTCATAGAATTTT 59.279 37.037 0.00 0.00 41.43 1.82
689 691 7.072454 TCCTGGTGCTATTACCTCATAGAATTT 59.928 37.037 0.00 0.00 41.43 1.82
690 692 6.558775 TCCTGGTGCTATTACCTCATAGAATT 59.441 38.462 0.00 0.00 41.43 2.17
691 693 6.084738 TCCTGGTGCTATTACCTCATAGAAT 58.915 40.000 0.00 0.00 41.43 2.40
692 694 5.464069 TCCTGGTGCTATTACCTCATAGAA 58.536 41.667 0.00 0.00 41.43 2.10
693 695 5.074746 TCCTGGTGCTATTACCTCATAGA 57.925 43.478 0.00 0.00 41.43 1.98
694 696 4.835615 ACTCCTGGTGCTATTACCTCATAG 59.164 45.833 0.00 0.00 41.43 2.23
695 697 4.816126 ACTCCTGGTGCTATTACCTCATA 58.184 43.478 0.00 0.00 41.43 2.15
696 698 3.643792 GACTCCTGGTGCTATTACCTCAT 59.356 47.826 0.00 0.00 41.43 2.90
1461 2688 3.479269 GCCGTCGGCTTCAAGTCG 61.479 66.667 28.98 4.61 46.69 4.18
1818 3057 7.638134 CAAGGAACAAGAAGAAGAAGAAGAAG 58.362 38.462 0.00 0.00 0.00 2.85
2102 3357 0.392595 GGTCTCCTAAAGTTGGCCCG 60.393 60.000 0.00 0.00 0.00 6.13
2359 4306 2.870161 CGTCGCGAACTCGTCCAG 60.870 66.667 12.06 0.00 42.22 3.86
2563 4519 0.324738 TCCCACAACTTGCACCCAAA 60.325 50.000 0.00 0.00 0.00 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.