Multiple sequence alignment - TraesCS6A01G233500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G233500 chr6A 100.000 2400 0 0 1387 3786 441435761 441438160 0.000000e+00 4433
1 TraesCS6A01G233500 chr6A 93.506 2002 86 14 1387 3351 410894859 410892865 0.000000e+00 2937
2 TraesCS6A01G233500 chr6A 100.000 1061 0 0 1 1061 441434375 441435435 0.000000e+00 1960
3 TraesCS6A01G233500 chr6A 95.687 997 26 6 80 1061 410895922 410894928 0.000000e+00 1587
4 TraesCS6A01G233500 chr6B 95.561 2005 46 10 1387 3355 470132144 470134141 0.000000e+00 3169
5 TraesCS6A01G233500 chr6B 97.646 1062 19 4 1 1061 470131019 470132075 0.000000e+00 1818
6 TraesCS6A01G233500 chr6B 97.080 137 3 1 3354 3489 470134556 470134692 2.940000e-56 230
7 TraesCS6A01G233500 chr6D 93.850 2000 81 23 1387 3351 304288011 304290003 0.000000e+00 2974
8 TraesCS6A01G233500 chr6D 95.697 1069 29 8 2 1061 304286882 304287942 0.000000e+00 1703


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G233500 chr6A 441434375 441438160 3785 False 3196.5 4433 100.000000 1 3786 2 chr6A.!!$F1 3785
1 TraesCS6A01G233500 chr6A 410892865 410895922 3057 True 2262.0 2937 94.596500 80 3351 2 chr6A.!!$R1 3271
2 TraesCS6A01G233500 chr6B 470131019 470134692 3673 False 1739.0 3169 96.762333 1 3489 3 chr6B.!!$F1 3488
3 TraesCS6A01G233500 chr6D 304286882 304290003 3121 False 2338.5 2974 94.773500 2 3351 2 chr6D.!!$F1 3349

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
297 304 0.373716 CGATTTAGCGAACCTGTGGC 59.626 55.000 0.00 0.00 0.0 5.01 F
932 945 0.683973 ACAGACTCCTCTTGTGCTGG 59.316 55.000 0.00 0.00 0.0 4.85 F
941 954 2.094286 CCTCTTGTGCTGGAGTACTCTG 60.094 54.545 21.88 15.54 0.0 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2038 2078 1.227102 CCATCGGCCTCCATTTCCA 59.773 57.895 0.00 0.0 0.00 3.53 R
2209 2249 4.023450 CAGTATCAAAATCGCCATGAGCAT 60.023 41.667 0.00 0.0 44.04 3.79 R
2857 2911 4.516323 GGCAATGCCCAATGATTTTAGTT 58.484 39.130 14.47 0.0 44.06 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.542462 TCTTCATAACTAAAATAATCACGGAGG 57.458 33.333 0.00 0.00 0.00 4.30
129 134 7.971722 GGTAAGTCGGCATAAATGTACAAAAAT 59.028 33.333 0.00 0.00 0.00 1.82
271 278 3.059982 CCTTCTGGACGGCACTCA 58.940 61.111 0.00 0.00 34.57 3.41
272 279 1.079543 CCTTCTGGACGGCACTCAG 60.080 63.158 0.00 0.00 34.57 3.35
297 304 0.373716 CGATTTAGCGAACCTGTGGC 59.626 55.000 0.00 0.00 0.00 5.01
932 945 0.683973 ACAGACTCCTCTTGTGCTGG 59.316 55.000 0.00 0.00 0.00 4.85
937 950 2.663826 CTCCTCTTGTGCTGGAGTAC 57.336 55.000 0.00 0.00 41.64 2.73
938 951 2.175202 CTCCTCTTGTGCTGGAGTACT 58.825 52.381 0.00 0.00 41.64 2.73
939 952 2.165437 CTCCTCTTGTGCTGGAGTACTC 59.835 54.545 14.87 14.87 41.64 2.59
940 953 2.175202 CCTCTTGTGCTGGAGTACTCT 58.825 52.381 21.88 0.00 0.00 3.24
941 954 2.094286 CCTCTTGTGCTGGAGTACTCTG 60.094 54.545 21.88 15.54 0.00 3.35
2209 2249 1.672030 ACATGCTTGCAGCGCTGTA 60.672 52.632 35.80 30.79 46.26 2.74
2262 2302 8.022210 GAAGATTTTCAGGGAAAGCATGAGCT 62.022 42.308 0.00 0.00 42.25 4.09
2857 2911 4.350368 TGTTCTGGTGATGCTTGTCTTA 57.650 40.909 0.00 0.00 0.00 2.10
2859 2913 4.515191 TGTTCTGGTGATGCTTGTCTTAAC 59.485 41.667 0.00 0.00 0.00 2.01
2960 3017 8.853077 TGGATGTCTGAATTATTATTAGCAGG 57.147 34.615 0.00 0.00 0.00 4.85
2964 3021 6.936900 TGTCTGAATTATTATTAGCAGGGAGC 59.063 38.462 0.00 0.00 46.19 4.70
2976 3033 2.740055 GGGAGCGTGTGCAGTGAG 60.740 66.667 0.00 0.00 46.23 3.51
3006 3063 1.959042 CTGCAAGTGAGTGAAGTGGT 58.041 50.000 0.00 0.00 0.00 4.16
3008 3065 3.466836 CTGCAAGTGAGTGAAGTGGTTA 58.533 45.455 0.00 0.00 0.00 2.85
3026 3083 5.686753 TGGTTACTTCACCATTAACAGTGT 58.313 37.500 6.60 0.00 42.27 3.55
3036 3093 3.304659 CCATTAACAGTGTCAGTGTTGGC 60.305 47.826 28.69 0.00 41.47 4.52
3053 3110 0.517316 GGCGCTGGTACTTTGTCTTG 59.483 55.000 7.64 0.00 0.00 3.02
3056 3113 2.479837 CGCTGGTACTTTGTCTTGTCA 58.520 47.619 0.00 0.00 0.00 3.58
3064 3121 5.291128 GGTACTTTGTCTTGTCATATCACGG 59.709 44.000 0.00 0.00 0.00 4.94
3066 3123 5.171476 ACTTTGTCTTGTCATATCACGGAG 58.829 41.667 0.00 0.00 0.00 4.63
3130 3189 6.808212 CCTGTGGTAATAAGAAAACTGCATTG 59.192 38.462 0.00 0.00 0.00 2.82
3131 3190 6.155827 TGTGGTAATAAGAAAACTGCATTGC 58.844 36.000 0.46 0.46 0.00 3.56
3166 3225 6.671614 TGTTTTGGAGTTGTGTGTAGTAAG 57.328 37.500 0.00 0.00 0.00 2.34
3192 3251 0.752009 CAGGAATCTGCAGCTGCCAT 60.752 55.000 34.64 23.36 41.18 4.40
3209 3268 1.661617 CCATGTTTGCCAAATCATGCG 59.338 47.619 18.90 12.51 37.09 4.73
3223 3282 2.833794 TCATGCGGCTGTAAATACCTC 58.166 47.619 0.00 0.00 0.00 3.85
3261 3320 6.819649 CCCAAGAAATATTGTCATGCACATTT 59.180 34.615 0.00 0.00 33.90 2.32
3266 3325 7.546667 AGAAATATTGTCATGCACATTTTCCAC 59.453 33.333 0.00 0.00 33.40 4.02
3268 3327 1.952990 TGTCATGCACATTTTCCACGT 59.047 42.857 0.00 0.00 0.00 4.49
3289 3348 0.322975 ACTCTTGTCTTGCGATGGCT 59.677 50.000 0.15 0.00 40.82 4.75
3307 3366 6.634436 CGATGGCTTTGCATAATTAGAAGAAC 59.366 38.462 0.00 0.00 0.00 3.01
3318 3377 8.462016 GCATAATTAGAAGAACAGTGAAATGGT 58.538 33.333 0.00 0.00 0.00 3.55
3331 3390 7.159372 ACAGTGAAATGGTAGTAACTTGGTAG 58.841 38.462 0.00 0.00 0.00 3.18
3352 3411 6.602009 GGTAGTTTGGGTAGTCAGCATTTATT 59.398 38.462 0.00 0.00 0.00 1.40
3378 3854 9.579768 TTTCCATAATAACAAAATTGATGTCGG 57.420 29.630 0.00 0.00 0.00 4.79
3417 3893 7.040473 TCTTGTAATTTAAAAGGTTTGCCGA 57.960 32.000 6.52 0.00 40.50 5.54
3489 3966 7.169140 GCTAGAAATAAGCTGAAGTAGAGAAGC 59.831 40.741 0.00 0.00 37.01 3.86
3490 3967 6.940739 AGAAATAAGCTGAAGTAGAGAAGCA 58.059 36.000 0.00 0.00 38.14 3.91
3491 3968 7.041107 AGAAATAAGCTGAAGTAGAGAAGCAG 58.959 38.462 0.00 0.00 38.14 4.24
3492 3969 3.608316 AAGCTGAAGTAGAGAAGCAGG 57.392 47.619 0.00 0.00 38.14 4.85
3493 3970 1.830477 AGCTGAAGTAGAGAAGCAGGG 59.170 52.381 0.00 0.00 38.14 4.45
3494 3971 1.552792 GCTGAAGTAGAGAAGCAGGGT 59.447 52.381 0.00 0.00 35.69 4.34
3495 3972 2.676463 GCTGAAGTAGAGAAGCAGGGTG 60.676 54.545 0.00 0.00 35.69 4.61
3496 3973 1.902508 TGAAGTAGAGAAGCAGGGTGG 59.097 52.381 0.00 0.00 0.00 4.61
3497 3974 1.208293 GAAGTAGAGAAGCAGGGTGGG 59.792 57.143 0.00 0.00 0.00 4.61
3498 3975 0.618968 AGTAGAGAAGCAGGGTGGGG 60.619 60.000 0.00 0.00 0.00 4.96
3499 3976 1.995626 TAGAGAAGCAGGGTGGGGC 60.996 63.158 0.00 0.00 0.00 5.80
3500 3977 2.477190 TAGAGAAGCAGGGTGGGGCT 62.477 60.000 0.00 0.00 43.46 5.19
3501 3978 3.635268 GAGAAGCAGGGTGGGGCTG 62.635 68.421 0.00 0.00 40.93 4.85
3502 3979 3.971702 GAAGCAGGGTGGGGCTGT 61.972 66.667 0.00 0.00 40.93 4.40
3503 3980 3.511610 AAGCAGGGTGGGGCTGTT 61.512 61.111 0.00 0.00 40.93 3.16
3504 3981 3.086764 AAGCAGGGTGGGGCTGTTT 62.087 57.895 0.00 0.00 40.93 2.83
3505 3982 2.524148 GCAGGGTGGGGCTGTTTT 60.524 61.111 0.00 0.00 0.00 2.43
3506 3983 2.140138 GCAGGGTGGGGCTGTTTTT 61.140 57.895 0.00 0.00 0.00 1.94
3507 3984 2.049435 CAGGGTGGGGCTGTTTTTC 58.951 57.895 0.00 0.00 0.00 2.29
3508 3985 0.469892 CAGGGTGGGGCTGTTTTTCT 60.470 55.000 0.00 0.00 0.00 2.52
3509 3986 0.469892 AGGGTGGGGCTGTTTTTCTG 60.470 55.000 0.00 0.00 0.00 3.02
3510 3987 0.469144 GGGTGGGGCTGTTTTTCTGA 60.469 55.000 0.00 0.00 0.00 3.27
3511 3988 1.408969 GGTGGGGCTGTTTTTCTGAA 58.591 50.000 0.00 0.00 0.00 3.02
3512 3989 1.341209 GGTGGGGCTGTTTTTCTGAAG 59.659 52.381 0.00 0.00 0.00 3.02
3513 3990 1.039856 TGGGGCTGTTTTTCTGAAGC 58.960 50.000 0.00 0.00 34.86 3.86
3514 3991 1.332195 GGGGCTGTTTTTCTGAAGCT 58.668 50.000 0.00 0.00 35.93 3.74
3515 3992 1.000171 GGGGCTGTTTTTCTGAAGCTG 60.000 52.381 0.00 0.00 35.93 4.24
3516 3993 1.683385 GGGCTGTTTTTCTGAAGCTGT 59.317 47.619 0.00 0.00 35.93 4.40
3517 3994 2.544486 GGGCTGTTTTTCTGAAGCTGTG 60.544 50.000 0.00 0.00 35.93 3.66
3518 3995 2.358898 GGCTGTTTTTCTGAAGCTGTGA 59.641 45.455 0.00 0.00 35.93 3.58
3519 3996 3.366719 GCTGTTTTTCTGAAGCTGTGAC 58.633 45.455 0.00 0.00 32.82 3.67
3520 3997 3.793465 GCTGTTTTTCTGAAGCTGTGACC 60.793 47.826 0.00 0.00 32.82 4.02
3521 3998 3.620488 TGTTTTTCTGAAGCTGTGACCT 58.380 40.909 0.00 0.00 0.00 3.85
3522 3999 3.378112 TGTTTTTCTGAAGCTGTGACCTG 59.622 43.478 0.00 0.00 0.00 4.00
3523 4000 3.281727 TTTTCTGAAGCTGTGACCTGT 57.718 42.857 0.00 0.00 0.00 4.00
3524 4001 4.415881 TTTTCTGAAGCTGTGACCTGTA 57.584 40.909 0.00 0.00 0.00 2.74
3525 4002 4.623932 TTTCTGAAGCTGTGACCTGTAT 57.376 40.909 0.00 0.00 0.00 2.29
3526 4003 4.623932 TTCTGAAGCTGTGACCTGTATT 57.376 40.909 0.00 0.00 0.00 1.89
3527 4004 3.930336 TCTGAAGCTGTGACCTGTATTG 58.070 45.455 0.00 0.00 0.00 1.90
3528 4005 2.417933 CTGAAGCTGTGACCTGTATTGC 59.582 50.000 0.00 0.00 0.00 3.56
3529 4006 2.038952 TGAAGCTGTGACCTGTATTGCT 59.961 45.455 0.00 0.00 0.00 3.91
3530 4007 2.105006 AGCTGTGACCTGTATTGCTG 57.895 50.000 0.00 0.00 0.00 4.41
3531 4008 0.449388 GCTGTGACCTGTATTGCTGC 59.551 55.000 0.00 0.00 0.00 5.25
3532 4009 1.947678 GCTGTGACCTGTATTGCTGCT 60.948 52.381 0.00 0.00 0.00 4.24
3533 4010 2.005451 CTGTGACCTGTATTGCTGCTC 58.995 52.381 0.00 0.00 0.00 4.26
3534 4011 1.347378 TGTGACCTGTATTGCTGCTCA 59.653 47.619 0.00 0.00 0.00 4.26
3535 4012 2.224499 TGTGACCTGTATTGCTGCTCAA 60.224 45.455 0.00 0.00 39.32 3.02
3536 4013 2.813754 GTGACCTGTATTGCTGCTCAAA 59.186 45.455 0.00 0.00 38.34 2.69
3537 4014 3.076621 TGACCTGTATTGCTGCTCAAAG 58.923 45.455 0.00 0.00 38.34 2.77
3538 4015 3.244526 TGACCTGTATTGCTGCTCAAAGA 60.245 43.478 0.00 0.00 38.34 2.52
3539 4016 3.944015 GACCTGTATTGCTGCTCAAAGAT 59.056 43.478 0.00 0.00 38.34 2.40
3540 4017 5.102953 ACCTGTATTGCTGCTCAAAGATA 57.897 39.130 0.00 0.00 38.34 1.98
3541 4018 5.688807 ACCTGTATTGCTGCTCAAAGATAT 58.311 37.500 0.00 0.00 38.34 1.63
3542 4019 6.830912 ACCTGTATTGCTGCTCAAAGATATA 58.169 36.000 0.00 0.00 38.34 0.86
3543 4020 6.933521 ACCTGTATTGCTGCTCAAAGATATAG 59.066 38.462 0.00 0.00 38.34 1.31
3544 4021 6.933521 CCTGTATTGCTGCTCAAAGATATAGT 59.066 38.462 0.00 0.00 38.34 2.12
3545 4022 8.090831 CCTGTATTGCTGCTCAAAGATATAGTA 58.909 37.037 0.00 0.00 38.34 1.82
3546 4023 9.650539 CTGTATTGCTGCTCAAAGATATAGTAT 57.349 33.333 0.00 0.00 38.34 2.12
3567 4044 8.850007 AGTATATACATCAAGTCGCTCTCTAA 57.150 34.615 15.18 0.00 0.00 2.10
3568 4045 8.723311 AGTATATACATCAAGTCGCTCTCTAAC 58.277 37.037 15.18 0.00 0.00 2.34
3569 4046 7.753309 ATATACATCAAGTCGCTCTCTAACT 57.247 36.000 0.00 0.00 0.00 2.24
3570 4047 4.103365 ACATCAAGTCGCTCTCTAACTG 57.897 45.455 0.00 0.00 0.00 3.16
3571 4048 3.759086 ACATCAAGTCGCTCTCTAACTGA 59.241 43.478 0.00 0.00 0.00 3.41
3572 4049 4.218635 ACATCAAGTCGCTCTCTAACTGAA 59.781 41.667 0.00 0.00 0.00 3.02
3573 4050 4.162096 TCAAGTCGCTCTCTAACTGAAC 57.838 45.455 0.00 0.00 0.00 3.18
3574 4051 3.057456 TCAAGTCGCTCTCTAACTGAACC 60.057 47.826 0.00 0.00 0.00 3.62
3575 4052 2.515854 AGTCGCTCTCTAACTGAACCA 58.484 47.619 0.00 0.00 0.00 3.67
3576 4053 2.891580 AGTCGCTCTCTAACTGAACCAA 59.108 45.455 0.00 0.00 0.00 3.67
3577 4054 2.987821 GTCGCTCTCTAACTGAACCAAC 59.012 50.000 0.00 0.00 0.00 3.77
3578 4055 2.029290 TCGCTCTCTAACTGAACCAACC 60.029 50.000 0.00 0.00 0.00 3.77
3579 4056 2.288825 CGCTCTCTAACTGAACCAACCA 60.289 50.000 0.00 0.00 0.00 3.67
3580 4057 3.067833 GCTCTCTAACTGAACCAACCAC 58.932 50.000 0.00 0.00 0.00 4.16
3581 4058 3.665190 CTCTCTAACTGAACCAACCACC 58.335 50.000 0.00 0.00 0.00 4.61
3582 4059 3.042682 TCTCTAACTGAACCAACCACCA 58.957 45.455 0.00 0.00 0.00 4.17
3583 4060 3.139077 CTCTAACTGAACCAACCACCAC 58.861 50.000 0.00 0.00 0.00 4.16
3584 4061 2.506231 TCTAACTGAACCAACCACCACA 59.494 45.455 0.00 0.00 0.00 4.17
3585 4062 2.452600 AACTGAACCAACCACCACAT 57.547 45.000 0.00 0.00 0.00 3.21
3586 4063 2.452600 ACTGAACCAACCACCACATT 57.547 45.000 0.00 0.00 0.00 2.71
3587 4064 2.031120 ACTGAACCAACCACCACATTG 58.969 47.619 0.00 0.00 0.00 2.82
3588 4065 0.749649 TGAACCAACCACCACATTGC 59.250 50.000 0.00 0.00 0.00 3.56
3589 4066 1.039856 GAACCAACCACCACATTGCT 58.960 50.000 0.00 0.00 0.00 3.91
3590 4067 0.752054 AACCAACCACCACATTGCTG 59.248 50.000 0.00 0.00 0.00 4.41
3591 4068 1.005867 CCAACCACCACATTGCTGC 60.006 57.895 0.00 0.00 0.00 5.25
3592 4069 1.466025 CCAACCACCACATTGCTGCT 61.466 55.000 0.00 0.00 0.00 4.24
3593 4070 0.038892 CAACCACCACATTGCTGCTC 60.039 55.000 0.00 0.00 0.00 4.26
3594 4071 0.467844 AACCACCACATTGCTGCTCA 60.468 50.000 0.00 0.00 0.00 4.26
3595 4072 0.467844 ACCACCACATTGCTGCTCAA 60.468 50.000 0.00 0.00 39.32 3.02
3596 4073 0.675083 CCACCACATTGCTGCTCAAA 59.325 50.000 0.00 0.00 38.34 2.69
3597 4074 1.336517 CCACCACATTGCTGCTCAAAG 60.337 52.381 0.00 0.00 38.34 2.77
3598 4075 1.610038 CACCACATTGCTGCTCAAAGA 59.390 47.619 0.00 0.00 38.34 2.52
3599 4076 2.230508 CACCACATTGCTGCTCAAAGAT 59.769 45.455 0.00 0.00 38.34 2.40
3600 4077 3.441222 CACCACATTGCTGCTCAAAGATA 59.559 43.478 0.00 0.00 38.34 1.98
3601 4078 4.097437 CACCACATTGCTGCTCAAAGATAT 59.903 41.667 0.00 0.00 38.34 1.63
3602 4079 5.297527 CACCACATTGCTGCTCAAAGATATA 59.702 40.000 0.00 0.00 38.34 0.86
3603 4080 5.297776 ACCACATTGCTGCTCAAAGATATAC 59.702 40.000 0.00 0.00 38.34 1.47
3604 4081 5.297527 CCACATTGCTGCTCAAAGATATACA 59.702 40.000 0.00 0.00 38.34 2.29
3605 4082 6.016527 CCACATTGCTGCTCAAAGATATACAT 60.017 38.462 0.00 0.00 38.34 2.29
3606 4083 7.173735 CCACATTGCTGCTCAAAGATATACATA 59.826 37.037 0.00 0.00 38.34 2.29
3607 4084 8.013947 CACATTGCTGCTCAAAGATATACATAC 58.986 37.037 0.00 0.00 38.34 2.39
3608 4085 7.716560 ACATTGCTGCTCAAAGATATACATACA 59.283 33.333 0.00 0.00 38.34 2.29
3609 4086 8.727910 CATTGCTGCTCAAAGATATACATACAT 58.272 33.333 0.00 0.00 38.34 2.29
3610 4087 7.895975 TGCTGCTCAAAGATATACATACATC 57.104 36.000 0.00 0.00 0.00 3.06
3611 4088 7.444299 TGCTGCTCAAAGATATACATACATCA 58.556 34.615 0.00 0.00 0.00 3.07
3612 4089 7.933033 TGCTGCTCAAAGATATACATACATCAA 59.067 33.333 0.00 0.00 0.00 2.57
3613 4090 8.441608 GCTGCTCAAAGATATACATACATCAAG 58.558 37.037 0.00 0.00 0.00 3.02
3614 4091 9.486497 CTGCTCAAAGATATACATACATCAAGT 57.514 33.333 0.00 0.00 0.00 3.16
3615 4092 9.481340 TGCTCAAAGATATACATACATCAAGTC 57.519 33.333 0.00 0.00 0.00 3.01
3616 4093 8.642885 GCTCAAAGATATACATACATCAAGTCG 58.357 37.037 0.00 0.00 0.00 4.18
3617 4094 8.520835 TCAAAGATATACATACATCAAGTCGC 57.479 34.615 0.00 0.00 0.00 5.19
3618 4095 8.360390 TCAAAGATATACATACATCAAGTCGCT 58.640 33.333 0.00 0.00 0.00 4.93
3619 4096 8.982685 CAAAGATATACATACATCAAGTCGCTT 58.017 33.333 0.00 0.00 0.00 4.68
3620 4097 8.526218 AAGATATACATACATCAAGTCGCTTG 57.474 34.615 11.78 11.78 42.25 4.01
3621 4098 6.587990 AGATATACATACATCAAGTCGCTTGC 59.412 38.462 12.81 0.00 40.84 4.01
3622 4099 2.698803 ACATACATCAAGTCGCTTGCA 58.301 42.857 12.81 0.00 40.84 4.08
3623 4100 3.073678 ACATACATCAAGTCGCTTGCAA 58.926 40.909 12.81 0.00 40.84 4.08
3624 4101 3.501828 ACATACATCAAGTCGCTTGCAAA 59.498 39.130 12.81 0.07 40.84 3.68
3625 4102 2.405892 ACATCAAGTCGCTTGCAAAC 57.594 45.000 12.81 0.00 40.84 2.93
3626 4103 1.949525 ACATCAAGTCGCTTGCAAACT 59.050 42.857 12.81 0.00 40.84 2.66
3627 4104 2.287188 ACATCAAGTCGCTTGCAAACTG 60.287 45.455 12.81 0.00 40.84 3.16
3628 4105 1.662517 TCAAGTCGCTTGCAAACTGA 58.337 45.000 12.81 0.00 40.84 3.41
3629 4106 2.013400 TCAAGTCGCTTGCAAACTGAA 58.987 42.857 12.81 0.00 40.84 3.02
3630 4107 2.111756 CAAGTCGCTTGCAAACTGAAC 58.888 47.619 0.00 0.00 34.63 3.18
3631 4108 0.663153 AGTCGCTTGCAAACTGAACC 59.337 50.000 0.00 0.00 0.00 3.62
3632 4109 0.380378 GTCGCTTGCAAACTGAACCA 59.620 50.000 0.00 0.00 0.00 3.67
3633 4110 1.098869 TCGCTTGCAAACTGAACCAA 58.901 45.000 0.00 0.00 0.00 3.67
3634 4111 1.199624 CGCTTGCAAACTGAACCAAC 58.800 50.000 0.00 0.00 0.00 3.77
3635 4112 1.199624 GCTTGCAAACTGAACCAACG 58.800 50.000 0.00 0.00 0.00 4.10
3636 4113 1.202245 GCTTGCAAACTGAACCAACGA 60.202 47.619 0.00 0.00 0.00 3.85
3637 4114 2.450160 CTTGCAAACTGAACCAACGAC 58.550 47.619 0.00 0.00 0.00 4.34
3638 4115 0.736053 TGCAAACTGAACCAACGACC 59.264 50.000 0.00 0.00 0.00 4.79
3639 4116 0.736053 GCAAACTGAACCAACGACCA 59.264 50.000 0.00 0.00 0.00 4.02
3640 4117 1.533129 GCAAACTGAACCAACGACCAC 60.533 52.381 0.00 0.00 0.00 4.16
3641 4118 1.740585 CAAACTGAACCAACGACCACA 59.259 47.619 0.00 0.00 0.00 4.17
3642 4119 1.375551 AACTGAACCAACGACCACAC 58.624 50.000 0.00 0.00 0.00 3.82
3643 4120 0.808453 ACTGAACCAACGACCACACG 60.808 55.000 0.00 0.00 39.31 4.49
3644 4121 0.528901 CTGAACCAACGACCACACGA 60.529 55.000 0.00 0.00 37.03 4.35
3645 4122 0.806884 TGAACCAACGACCACACGAC 60.807 55.000 0.00 0.00 37.03 4.34
3646 4123 0.529119 GAACCAACGACCACACGACT 60.529 55.000 0.00 0.00 37.03 4.18
3647 4124 0.108041 AACCAACGACCACACGACTT 60.108 50.000 0.00 0.00 37.03 3.01
3648 4125 0.746063 ACCAACGACCACACGACTTA 59.254 50.000 0.00 0.00 37.03 2.24
3649 4126 1.342174 ACCAACGACCACACGACTTAT 59.658 47.619 0.00 0.00 37.03 1.73
3650 4127 2.224113 ACCAACGACCACACGACTTATT 60.224 45.455 0.00 0.00 37.03 1.40
3651 4128 3.005684 ACCAACGACCACACGACTTATTA 59.994 43.478 0.00 0.00 37.03 0.98
3652 4129 4.178540 CCAACGACCACACGACTTATTAT 58.821 43.478 0.00 0.00 37.03 1.28
3653 4130 4.266976 CCAACGACCACACGACTTATTATC 59.733 45.833 0.00 0.00 37.03 1.75
3654 4131 4.707030 ACGACCACACGACTTATTATCA 57.293 40.909 0.00 0.00 37.03 2.15
3655 4132 5.258456 ACGACCACACGACTTATTATCAT 57.742 39.130 0.00 0.00 37.03 2.45
3656 4133 5.279384 ACGACCACACGACTTATTATCATC 58.721 41.667 0.00 0.00 37.03 2.92
3657 4134 4.378910 CGACCACACGACTTATTATCATCG 59.621 45.833 0.00 0.00 40.39 3.84
3658 4135 5.509716 ACCACACGACTTATTATCATCGA 57.490 39.130 0.00 0.00 37.97 3.59
3659 4136 5.279384 ACCACACGACTTATTATCATCGAC 58.721 41.667 0.00 0.00 37.97 4.20
3660 4137 4.378910 CCACACGACTTATTATCATCGACG 59.621 45.833 0.00 0.00 37.97 5.12
3661 4138 3.973135 ACACGACTTATTATCATCGACGC 59.027 43.478 0.00 0.00 37.97 5.19
3662 4139 3.972502 CACGACTTATTATCATCGACGCA 59.027 43.478 0.00 0.00 37.97 5.24
3663 4140 3.973135 ACGACTTATTATCATCGACGCAC 59.027 43.478 0.00 0.00 37.97 5.34
3664 4141 3.972502 CGACTTATTATCATCGACGCACA 59.027 43.478 0.00 0.00 36.70 4.57
3665 4142 4.143803 CGACTTATTATCATCGACGCACAC 60.144 45.833 0.00 0.00 36.70 3.82
3666 4143 4.678622 ACTTATTATCATCGACGCACACA 58.321 39.130 0.00 0.00 0.00 3.72
3667 4144 4.503007 ACTTATTATCATCGACGCACACAC 59.497 41.667 0.00 0.00 0.00 3.82
3668 4145 2.355717 TTATCATCGACGCACACACA 57.644 45.000 0.00 0.00 0.00 3.72
3669 4146 1.908065 TATCATCGACGCACACACAG 58.092 50.000 0.00 0.00 0.00 3.66
3670 4147 0.737367 ATCATCGACGCACACACAGG 60.737 55.000 0.00 0.00 0.00 4.00
3671 4148 2.738521 ATCGACGCACACACAGGC 60.739 61.111 0.00 0.00 0.00 4.85
3672 4149 3.513768 ATCGACGCACACACAGGCA 62.514 57.895 0.00 0.00 0.00 4.75
3673 4150 2.987282 ATCGACGCACACACAGGCAA 62.987 55.000 0.00 0.00 0.00 4.52
3674 4151 2.818487 CGACGCACACACAGGCAAA 61.818 57.895 0.00 0.00 0.00 3.68
3675 4152 1.298339 GACGCACACACAGGCAAAC 60.298 57.895 0.00 0.00 0.00 2.93
3676 4153 1.987704 GACGCACACACAGGCAAACA 61.988 55.000 0.00 0.00 0.00 2.83
3677 4154 1.359833 CGCACACACAGGCAAACAT 59.640 52.632 0.00 0.00 0.00 2.71
3678 4155 0.935831 CGCACACACAGGCAAACATG 60.936 55.000 0.00 0.00 0.00 3.21
3679 4156 1.216941 GCACACACAGGCAAACATGC 61.217 55.000 0.00 0.00 0.00 4.06
3680 4157 0.935831 CACACACAGGCAAACATGCG 60.936 55.000 0.00 0.00 35.24 4.73
3681 4158 2.017783 CACACAGGCAAACATGCGC 61.018 57.895 0.00 0.00 35.24 6.09
3682 4159 2.195567 ACACAGGCAAACATGCGCT 61.196 52.632 9.73 0.00 35.24 5.92
3683 4160 0.888736 ACACAGGCAAACATGCGCTA 60.889 50.000 9.73 0.00 35.24 4.26
3684 4161 0.179181 CACAGGCAAACATGCGCTAG 60.179 55.000 9.73 3.08 35.24 3.42
3685 4162 0.606401 ACAGGCAAACATGCGCTAGT 60.606 50.000 9.73 3.85 35.24 2.57
3686 4163 1.338674 ACAGGCAAACATGCGCTAGTA 60.339 47.619 9.73 0.00 35.24 1.82
3687 4164 1.737236 CAGGCAAACATGCGCTAGTAA 59.263 47.619 9.73 0.00 35.24 2.24
3688 4165 2.161410 CAGGCAAACATGCGCTAGTAAA 59.839 45.455 9.73 0.00 35.24 2.01
3689 4166 2.161609 AGGCAAACATGCGCTAGTAAAC 59.838 45.455 9.73 0.05 35.24 2.01
3690 4167 2.161609 GGCAAACATGCGCTAGTAAACT 59.838 45.455 9.73 0.00 35.24 2.66
3691 4168 3.417185 GCAAACATGCGCTAGTAAACTC 58.583 45.455 9.73 0.00 0.00 3.01
3692 4169 3.125316 GCAAACATGCGCTAGTAAACTCT 59.875 43.478 9.73 0.00 0.00 3.24
3693 4170 4.378459 GCAAACATGCGCTAGTAAACTCTT 60.378 41.667 9.73 0.00 0.00 2.85
3694 4171 5.163893 GCAAACATGCGCTAGTAAACTCTTA 60.164 40.000 9.73 0.00 0.00 2.10
3695 4172 6.456988 GCAAACATGCGCTAGTAAACTCTTAT 60.457 38.462 9.73 0.00 0.00 1.73
3696 4173 7.464358 CAAACATGCGCTAGTAAACTCTTATT 58.536 34.615 9.73 0.00 0.00 1.40
3697 4174 8.600625 CAAACATGCGCTAGTAAACTCTTATTA 58.399 33.333 9.73 0.00 0.00 0.98
3698 4175 8.888579 AACATGCGCTAGTAAACTCTTATTAT 57.111 30.769 9.73 0.00 0.00 1.28
3699 4176 8.888579 ACATGCGCTAGTAAACTCTTATTATT 57.111 30.769 9.73 0.00 0.00 1.40
3700 4177 9.976511 ACATGCGCTAGTAAACTCTTATTATTA 57.023 29.630 9.73 0.00 0.00 0.98
3702 4179 9.976511 ATGCGCTAGTAAACTCTTATTATTACA 57.023 29.630 9.73 0.00 32.10 2.41
3703 4180 9.976511 TGCGCTAGTAAACTCTTATTATTACAT 57.023 29.630 9.73 0.00 32.10 2.29
3712 4189 8.539770 AACTCTTATTATTACATGATCTGCCG 57.460 34.615 0.00 0.00 0.00 5.69
3713 4190 7.671302 ACTCTTATTATTACATGATCTGCCGT 58.329 34.615 0.00 0.00 0.00 5.68
3714 4191 7.600375 ACTCTTATTATTACATGATCTGCCGTG 59.400 37.037 0.00 0.00 0.00 4.94
3715 4192 7.441836 TCTTATTATTACATGATCTGCCGTGT 58.558 34.615 0.00 0.00 39.40 4.49
3716 4193 5.929697 ATTATTACATGATCTGCCGTGTG 57.070 39.130 0.00 0.00 36.95 3.82
3717 4194 1.368641 TTACATGATCTGCCGTGTGC 58.631 50.000 0.00 0.00 36.95 4.57
3726 4203 2.280797 GCCGTGTGCAGACCAGAA 60.281 61.111 8.62 0.00 40.77 3.02
3727 4204 2.320587 GCCGTGTGCAGACCAGAAG 61.321 63.158 8.62 0.00 40.77 2.85
3728 4205 1.367471 CCGTGTGCAGACCAGAAGA 59.633 57.895 8.62 0.00 0.00 2.87
3729 4206 0.249868 CCGTGTGCAGACCAGAAGAA 60.250 55.000 8.62 0.00 0.00 2.52
3730 4207 0.861837 CGTGTGCAGACCAGAAGAAC 59.138 55.000 8.62 0.00 0.00 3.01
3731 4208 0.861837 GTGTGCAGACCAGAAGAACG 59.138 55.000 1.72 0.00 0.00 3.95
3732 4209 0.249868 TGTGCAGACCAGAAGAACGG 60.250 55.000 0.00 0.00 0.00 4.44
3733 4210 0.249911 GTGCAGACCAGAAGAACGGT 60.250 55.000 0.00 0.00 38.56 4.83
3734 4211 0.249868 TGCAGACCAGAAGAACGGTG 60.250 55.000 0.00 0.00 34.99 4.94
3735 4212 0.033504 GCAGACCAGAAGAACGGTGA 59.966 55.000 0.00 0.00 34.99 4.02
3736 4213 1.784525 CAGACCAGAAGAACGGTGAC 58.215 55.000 0.00 0.00 34.99 3.67
3737 4214 1.341531 CAGACCAGAAGAACGGTGACT 59.658 52.381 0.00 0.00 34.99 3.41
3738 4215 2.557056 CAGACCAGAAGAACGGTGACTA 59.443 50.000 0.00 0.00 34.99 2.59
3739 4216 2.557490 AGACCAGAAGAACGGTGACTAC 59.443 50.000 0.00 0.00 34.99 2.73
3740 4217 1.617357 ACCAGAAGAACGGTGACTACC 59.383 52.381 0.00 0.00 43.89 3.18
3741 4218 1.893801 CCAGAAGAACGGTGACTACCT 59.106 52.381 0.00 0.00 45.22 3.08
3742 4219 2.352814 CCAGAAGAACGGTGACTACCTG 60.353 54.545 0.00 0.00 45.22 4.00
3743 4220 1.272769 AGAAGAACGGTGACTACCTGC 59.727 52.381 0.00 0.00 45.22 4.85
3744 4221 1.272769 GAAGAACGGTGACTACCTGCT 59.727 52.381 0.00 0.00 45.22 4.24
3745 4222 0.603569 AGAACGGTGACTACCTGCTG 59.396 55.000 0.00 0.00 45.22 4.41
3746 4223 0.389948 GAACGGTGACTACCTGCTGG 60.390 60.000 8.29 8.29 45.22 4.85
3747 4224 0.830444 AACGGTGACTACCTGCTGGA 60.830 55.000 17.64 0.00 45.22 3.86
3748 4225 1.251527 ACGGTGACTACCTGCTGGAG 61.252 60.000 17.64 11.43 45.22 3.86
3749 4226 0.965866 CGGTGACTACCTGCTGGAGA 60.966 60.000 17.64 2.77 45.22 3.71
3750 4227 1.490574 GGTGACTACCTGCTGGAGAT 58.509 55.000 17.64 0.13 43.97 2.75
3751 4228 1.137872 GGTGACTACCTGCTGGAGATG 59.862 57.143 17.64 5.64 43.97 2.90
3752 4229 1.137872 GTGACTACCTGCTGGAGATGG 59.862 57.143 17.64 0.00 37.04 3.51
3753 4230 0.755686 GACTACCTGCTGGAGATGGG 59.244 60.000 17.64 2.32 37.04 4.00
3754 4231 0.339859 ACTACCTGCTGGAGATGGGA 59.660 55.000 17.64 0.00 37.04 4.37
3755 4232 1.061812 ACTACCTGCTGGAGATGGGAT 60.062 52.381 17.64 0.00 37.04 3.85
3756 4233 1.622811 CTACCTGCTGGAGATGGGATC 59.377 57.143 17.64 0.00 37.04 3.36
3757 4234 0.326904 ACCTGCTGGAGATGGGATCA 60.327 55.000 17.64 0.00 37.04 2.92
3758 4235 0.108207 CCTGCTGGAGATGGGATCAC 59.892 60.000 2.92 0.00 34.57 3.06
3759 4236 1.129917 CTGCTGGAGATGGGATCACT 58.870 55.000 0.00 0.00 0.00 3.41
3760 4237 0.835276 TGCTGGAGATGGGATCACTG 59.165 55.000 0.00 0.00 0.00 3.66
3761 4238 0.534652 GCTGGAGATGGGATCACTGC 60.535 60.000 0.00 0.00 0.00 4.40
3762 4239 1.129917 CTGGAGATGGGATCACTGCT 58.870 55.000 0.00 0.00 0.00 4.24
3763 4240 1.489649 CTGGAGATGGGATCACTGCTT 59.510 52.381 0.00 0.00 0.00 3.91
3764 4241 1.918262 TGGAGATGGGATCACTGCTTT 59.082 47.619 0.00 0.00 0.00 3.51
3765 4242 2.309755 TGGAGATGGGATCACTGCTTTT 59.690 45.455 0.00 0.00 0.00 2.27
3766 4243 2.948315 GGAGATGGGATCACTGCTTTTC 59.052 50.000 0.00 0.00 0.00 2.29
3767 4244 2.611292 GAGATGGGATCACTGCTTTTCG 59.389 50.000 0.00 0.00 0.00 3.46
3768 4245 2.237143 AGATGGGATCACTGCTTTTCGA 59.763 45.455 0.00 0.00 0.00 3.71
3769 4246 2.099141 TGGGATCACTGCTTTTCGAG 57.901 50.000 0.00 0.00 0.00 4.04
3770 4247 1.339055 TGGGATCACTGCTTTTCGAGG 60.339 52.381 0.00 0.00 0.00 4.63
3771 4248 1.066143 GGGATCACTGCTTTTCGAGGA 60.066 52.381 0.00 0.00 0.00 3.71
3772 4249 2.420687 GGGATCACTGCTTTTCGAGGAT 60.421 50.000 0.00 0.00 0.00 3.24
3773 4250 2.611292 GGATCACTGCTTTTCGAGGATG 59.389 50.000 0.00 0.00 0.00 3.51
3774 4251 1.442769 TCACTGCTTTTCGAGGATGC 58.557 50.000 0.00 0.00 0.00 3.91
3775 4252 0.095935 CACTGCTTTTCGAGGATGCG 59.904 55.000 0.00 0.00 0.00 4.73
3776 4253 1.021390 ACTGCTTTTCGAGGATGCGG 61.021 55.000 12.85 12.85 36.24 5.69
3777 4254 1.709147 CTGCTTTTCGAGGATGCGGG 61.709 60.000 8.71 1.11 0.00 6.13
3778 4255 2.472909 GCTTTTCGAGGATGCGGGG 61.473 63.158 0.00 0.00 0.00 5.73
3779 4256 1.819632 CTTTTCGAGGATGCGGGGG 60.820 63.158 0.00 0.00 0.00 5.40
3780 4257 2.536997 CTTTTCGAGGATGCGGGGGT 62.537 60.000 0.00 0.00 0.00 4.95
3781 4258 1.266160 TTTTCGAGGATGCGGGGGTA 61.266 55.000 0.00 0.00 0.00 3.69
3782 4259 1.266160 TTTCGAGGATGCGGGGGTAA 61.266 55.000 0.00 0.00 0.00 2.85
3783 4260 1.266160 TTCGAGGATGCGGGGGTAAA 61.266 55.000 0.00 0.00 0.00 2.01
3784 4261 1.222387 CGAGGATGCGGGGGTAAAA 59.778 57.895 0.00 0.00 0.00 1.52
3785 4262 0.814010 CGAGGATGCGGGGGTAAAAG 60.814 60.000 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 134 1.341581 CCGAATTTCTGGCCCCCTTAA 60.342 52.381 0.00 0.00 0.00 1.85
271 278 1.202428 GGTTCGCTAAATCGGAGCTCT 60.202 52.381 14.64 0.00 37.81 4.09
272 279 1.202428 AGGTTCGCTAAATCGGAGCTC 60.202 52.381 4.71 4.71 41.45 4.09
297 304 3.947834 GACAACTTCCTTGGGATGTATGG 59.052 47.826 5.70 2.87 38.82 2.74
906 919 4.199310 CACAAGAGGAGTCTGTTTTGGAA 58.801 43.478 0.00 0.00 31.37 3.53
932 945 0.452585 GGGCGACAGACAGAGTACTC 59.547 60.000 15.41 15.41 0.00 2.59
934 947 0.601558 TTGGGCGACAGACAGAGTAC 59.398 55.000 0.00 0.00 0.00 2.73
936 949 0.468226 TTTTGGGCGACAGACAGAGT 59.532 50.000 0.00 0.00 0.00 3.24
937 950 0.868406 GTTTTGGGCGACAGACAGAG 59.132 55.000 0.00 0.00 0.00 3.35
938 951 0.534203 GGTTTTGGGCGACAGACAGA 60.534 55.000 0.00 0.00 0.00 3.41
939 952 0.535102 AGGTTTTGGGCGACAGACAG 60.535 55.000 0.00 0.00 0.00 3.51
940 953 0.759959 TAGGTTTTGGGCGACAGACA 59.240 50.000 0.00 0.00 0.00 3.41
941 954 1.886886 TTAGGTTTTGGGCGACAGAC 58.113 50.000 0.00 0.00 0.00 3.51
2038 2078 1.227102 CCATCGGCCTCCATTTCCA 59.773 57.895 0.00 0.00 0.00 3.53
2209 2249 4.023450 CAGTATCAAAATCGCCATGAGCAT 60.023 41.667 0.00 0.00 44.04 3.79
2824 2878 6.767902 GCATCACCAGAACAATATCTCCTAAA 59.232 38.462 0.00 0.00 0.00 1.85
2857 2911 4.516323 GGCAATGCCCAATGATTTTAGTT 58.484 39.130 14.47 0.00 44.06 2.24
2888 2943 9.487442 AACCTGGATACACAAAACCATAATAAT 57.513 29.630 0.00 0.00 46.17 1.28
2960 3017 2.024319 GTCTCACTGCACACGCTCC 61.024 63.158 0.00 0.00 39.64 4.70
2964 3021 2.313172 GCTGGTCTCACTGCACACG 61.313 63.158 0.00 0.00 35.65 4.49
3005 3062 6.482308 ACTGACACTGTTAATGGTGAAGTAAC 59.518 38.462 14.71 0.00 39.30 2.50
3006 3063 6.481976 CACTGACACTGTTAATGGTGAAGTAA 59.518 38.462 14.71 0.00 37.22 2.24
3008 3065 4.816385 CACTGACACTGTTAATGGTGAAGT 59.184 41.667 14.71 13.59 37.22 3.01
3021 3078 1.889105 AGCGCCAACACTGACACTG 60.889 57.895 2.29 0.00 0.00 3.66
3022 3079 1.889105 CAGCGCCAACACTGACACT 60.889 57.895 2.29 0.00 35.90 3.55
3023 3080 2.633657 CAGCGCCAACACTGACAC 59.366 61.111 2.29 0.00 35.90 3.67
3024 3081 2.034048 TACCAGCGCCAACACTGACA 62.034 55.000 2.29 0.00 35.90 3.58
3025 3082 1.301401 TACCAGCGCCAACACTGAC 60.301 57.895 2.29 0.00 35.90 3.51
3026 3083 1.301401 GTACCAGCGCCAACACTGA 60.301 57.895 2.29 0.00 35.90 3.41
3036 3093 2.479837 TGACAAGACAAAGTACCAGCG 58.520 47.619 0.00 0.00 0.00 5.18
3053 3110 6.380095 ACTCTTCTTACTCCGTGATATGAC 57.620 41.667 0.00 0.00 0.00 3.06
3056 3113 6.154706 ACCAAACTCTTCTTACTCCGTGATAT 59.845 38.462 0.00 0.00 0.00 1.63
3064 3121 4.452795 GCAGGAACCAAACTCTTCTTACTC 59.547 45.833 0.00 0.00 0.00 2.59
3066 3123 4.390264 AGCAGGAACCAAACTCTTCTTAC 58.610 43.478 0.00 0.00 0.00 2.34
3130 3189 3.084039 TCCAAAACATCAGACCATCTGC 58.916 45.455 0.74 0.00 43.95 4.26
3131 3190 4.330250 ACTCCAAAACATCAGACCATCTG 58.670 43.478 0.00 0.00 45.59 2.90
3137 3196 4.096382 ACACACAACTCCAAAACATCAGAC 59.904 41.667 0.00 0.00 0.00 3.51
3141 3200 5.751243 ACTACACACAACTCCAAAACATC 57.249 39.130 0.00 0.00 0.00 3.06
3166 3225 4.732938 GCAGCTGCAGATTCCTGAAATAAC 60.733 45.833 33.36 0.00 43.02 1.89
3192 3251 3.511182 CCGCATGATTTGGCAAACA 57.489 47.368 16.00 15.07 0.00 2.83
3209 3268 4.054780 TGATCACGAGGTATTTACAGCC 57.945 45.455 0.00 0.00 0.00 4.85
3223 3282 2.099141 TCTTGGGCTCTTTGATCACG 57.901 50.000 0.00 0.00 0.00 4.35
3261 3320 3.128349 GCAAGACAAGAGTTACGTGGAA 58.872 45.455 0.00 0.00 32.54 3.53
3307 3366 7.159372 ACTACCAAGTTACTACCATTTCACTG 58.841 38.462 0.00 0.00 29.00 3.66
3318 3377 6.782000 TGACTACCCAAACTACCAAGTTACTA 59.218 38.462 0.00 0.00 45.37 1.82
3320 3379 5.857268 TGACTACCCAAACTACCAAGTTAC 58.143 41.667 0.00 0.00 45.37 2.50
3331 3390 6.811665 GGAAAATAAATGCTGACTACCCAAAC 59.188 38.462 0.00 0.00 0.00 2.93
3352 3411 9.579768 CCGACATCAATTTTGTTATTATGGAAA 57.420 29.630 0.00 0.00 0.00 3.13
3366 3842 6.877611 ACAAAGTCTAACCGACATCAATTT 57.122 33.333 0.00 0.00 45.32 1.82
3417 3893 6.147821 CCTGTTGTACTCGAATTTCACATTCT 59.852 38.462 0.00 0.00 0.00 2.40
3489 3966 0.469892 AGAAAAACAGCCCCACCCTG 60.470 55.000 0.00 0.00 36.41 4.45
3490 3967 0.469892 CAGAAAAACAGCCCCACCCT 60.470 55.000 0.00 0.00 0.00 4.34
3491 3968 0.469144 TCAGAAAAACAGCCCCACCC 60.469 55.000 0.00 0.00 0.00 4.61
3492 3969 1.341209 CTTCAGAAAAACAGCCCCACC 59.659 52.381 0.00 0.00 0.00 4.61
3493 3970 1.269778 GCTTCAGAAAAACAGCCCCAC 60.270 52.381 0.00 0.00 0.00 4.61
3494 3971 1.039856 GCTTCAGAAAAACAGCCCCA 58.960 50.000 0.00 0.00 0.00 4.96
3495 3972 1.000171 CAGCTTCAGAAAAACAGCCCC 60.000 52.381 0.00 0.00 32.25 5.80
3496 3973 1.683385 ACAGCTTCAGAAAAACAGCCC 59.317 47.619 0.00 0.00 32.25 5.19
3497 3974 2.358898 TCACAGCTTCAGAAAAACAGCC 59.641 45.455 0.00 0.00 32.25 4.85
3498 3975 3.366719 GTCACAGCTTCAGAAAAACAGC 58.633 45.455 0.00 0.00 0.00 4.40
3499 3976 3.629398 AGGTCACAGCTTCAGAAAAACAG 59.371 43.478 0.00 0.00 0.00 3.16
3500 3977 3.378112 CAGGTCACAGCTTCAGAAAAACA 59.622 43.478 0.00 0.00 0.00 2.83
3501 3978 3.378427 ACAGGTCACAGCTTCAGAAAAAC 59.622 43.478 0.00 0.00 0.00 2.43
3502 3979 3.620488 ACAGGTCACAGCTTCAGAAAAA 58.380 40.909 0.00 0.00 0.00 1.94
3503 3980 3.281727 ACAGGTCACAGCTTCAGAAAA 57.718 42.857 0.00 0.00 0.00 2.29
3504 3981 4.623932 ATACAGGTCACAGCTTCAGAAA 57.376 40.909 0.00 0.00 0.00 2.52
3505 3982 4.318332 CAATACAGGTCACAGCTTCAGAA 58.682 43.478 0.00 0.00 0.00 3.02
3506 3983 3.866066 GCAATACAGGTCACAGCTTCAGA 60.866 47.826 0.00 0.00 0.00 3.27
3507 3984 2.417933 GCAATACAGGTCACAGCTTCAG 59.582 50.000 0.00 0.00 0.00 3.02
3508 3985 2.038952 AGCAATACAGGTCACAGCTTCA 59.961 45.455 0.00 0.00 0.00 3.02
3509 3986 2.417933 CAGCAATACAGGTCACAGCTTC 59.582 50.000 0.00 0.00 0.00 3.86
3510 3987 2.430465 CAGCAATACAGGTCACAGCTT 58.570 47.619 0.00 0.00 0.00 3.74
3511 3988 1.947678 GCAGCAATACAGGTCACAGCT 60.948 52.381 0.00 0.00 0.00 4.24
3512 3989 0.449388 GCAGCAATACAGGTCACAGC 59.551 55.000 0.00 0.00 0.00 4.40
3513 3990 2.005451 GAGCAGCAATACAGGTCACAG 58.995 52.381 0.00 0.00 32.92 3.66
3514 3991 1.347378 TGAGCAGCAATACAGGTCACA 59.653 47.619 0.00 0.00 37.37 3.58
3515 3992 2.099141 TGAGCAGCAATACAGGTCAC 57.901 50.000 0.00 0.00 37.37 3.67
3516 3993 2.857186 TTGAGCAGCAATACAGGTCA 57.143 45.000 0.00 0.00 40.11 4.02
3517 3994 3.338249 TCTTTGAGCAGCAATACAGGTC 58.662 45.455 0.00 0.00 36.15 3.85
3518 3995 3.423539 TCTTTGAGCAGCAATACAGGT 57.576 42.857 0.00 0.00 36.15 4.00
3519 3996 6.933521 ACTATATCTTTGAGCAGCAATACAGG 59.066 38.462 0.00 0.00 36.15 4.00
3520 3997 7.959689 ACTATATCTTTGAGCAGCAATACAG 57.040 36.000 0.00 0.00 36.15 2.74
3541 4018 9.939802 TTAGAGAGCGACTTGATGTATATACTA 57.060 33.333 13.89 1.51 0.00 1.82
3542 4019 8.723311 GTTAGAGAGCGACTTGATGTATATACT 58.277 37.037 13.89 0.00 0.00 2.12
3543 4020 8.723311 AGTTAGAGAGCGACTTGATGTATATAC 58.277 37.037 5.89 5.89 0.00 1.47
3544 4021 8.722394 CAGTTAGAGAGCGACTTGATGTATATA 58.278 37.037 0.00 0.00 0.00 0.86
3545 4022 7.445707 TCAGTTAGAGAGCGACTTGATGTATAT 59.554 37.037 0.00 0.00 0.00 0.86
3546 4023 6.766467 TCAGTTAGAGAGCGACTTGATGTATA 59.234 38.462 0.00 0.00 0.00 1.47
3547 4024 5.590663 TCAGTTAGAGAGCGACTTGATGTAT 59.409 40.000 0.00 0.00 0.00 2.29
3548 4025 4.941873 TCAGTTAGAGAGCGACTTGATGTA 59.058 41.667 0.00 0.00 0.00 2.29
3549 4026 3.759086 TCAGTTAGAGAGCGACTTGATGT 59.241 43.478 0.00 0.00 0.00 3.06
3550 4027 4.362932 TCAGTTAGAGAGCGACTTGATG 57.637 45.455 0.00 0.00 0.00 3.07
3551 4028 4.381079 GGTTCAGTTAGAGAGCGACTTGAT 60.381 45.833 0.00 0.00 0.00 2.57
3552 4029 3.057456 GGTTCAGTTAGAGAGCGACTTGA 60.057 47.826 0.00 0.00 0.00 3.02
3553 4030 3.246619 GGTTCAGTTAGAGAGCGACTTG 58.753 50.000 0.00 0.00 0.00 3.16
3554 4031 2.891580 TGGTTCAGTTAGAGAGCGACTT 59.108 45.455 0.00 0.00 0.00 3.01
3555 4032 2.515854 TGGTTCAGTTAGAGAGCGACT 58.484 47.619 0.00 0.00 0.00 4.18
3556 4033 2.987821 GTTGGTTCAGTTAGAGAGCGAC 59.012 50.000 0.00 0.00 0.00 5.19
3557 4034 2.029290 GGTTGGTTCAGTTAGAGAGCGA 60.029 50.000 0.00 0.00 0.00 4.93
3558 4035 2.288825 TGGTTGGTTCAGTTAGAGAGCG 60.289 50.000 0.00 0.00 0.00 5.03
3559 4036 3.067833 GTGGTTGGTTCAGTTAGAGAGC 58.932 50.000 0.00 0.00 0.00 4.09
3560 4037 3.071023 TGGTGGTTGGTTCAGTTAGAGAG 59.929 47.826 0.00 0.00 0.00 3.20
3561 4038 3.042682 TGGTGGTTGGTTCAGTTAGAGA 58.957 45.455 0.00 0.00 0.00 3.10
3562 4039 3.139077 GTGGTGGTTGGTTCAGTTAGAG 58.861 50.000 0.00 0.00 0.00 2.43
3563 4040 2.506231 TGTGGTGGTTGGTTCAGTTAGA 59.494 45.455 0.00 0.00 0.00 2.10
3564 4041 2.925724 TGTGGTGGTTGGTTCAGTTAG 58.074 47.619 0.00 0.00 0.00 2.34
3565 4042 3.586470 ATGTGGTGGTTGGTTCAGTTA 57.414 42.857 0.00 0.00 0.00 2.24
3566 4043 2.430332 CAATGTGGTGGTTGGTTCAGTT 59.570 45.455 0.00 0.00 0.00 3.16
3567 4044 2.031120 CAATGTGGTGGTTGGTTCAGT 58.969 47.619 0.00 0.00 0.00 3.41
3568 4045 1.269726 GCAATGTGGTGGTTGGTTCAG 60.270 52.381 0.00 0.00 0.00 3.02
3569 4046 0.749649 GCAATGTGGTGGTTGGTTCA 59.250 50.000 0.00 0.00 0.00 3.18
3570 4047 1.039856 AGCAATGTGGTGGTTGGTTC 58.960 50.000 0.00 0.00 32.64 3.62
3571 4048 0.752054 CAGCAATGTGGTGGTTGGTT 59.248 50.000 0.00 0.00 41.77 3.67
3572 4049 1.747325 GCAGCAATGTGGTGGTTGGT 61.747 55.000 9.28 0.00 45.26 3.67
3573 4050 1.005867 GCAGCAATGTGGTGGTTGG 60.006 57.895 9.28 0.00 45.26 3.77
3574 4051 4.659480 GCAGCAATGTGGTGGTTG 57.341 55.556 9.28 0.00 45.26 3.77
3577 4054 0.675083 TTTGAGCAGCAATGTGGTGG 59.325 50.000 9.28 0.00 45.26 4.61
3579 4056 1.985473 TCTTTGAGCAGCAATGTGGT 58.015 45.000 0.00 0.00 36.15 4.16
3580 4057 4.913335 ATATCTTTGAGCAGCAATGTGG 57.087 40.909 0.00 0.00 36.15 4.17
3581 4058 6.367686 TGTATATCTTTGAGCAGCAATGTG 57.632 37.500 0.00 0.00 36.15 3.21
3582 4059 7.716560 TGTATGTATATCTTTGAGCAGCAATGT 59.283 33.333 0.00 0.00 36.15 2.71
3583 4060 8.091385 TGTATGTATATCTTTGAGCAGCAATG 57.909 34.615 0.00 0.00 36.15 2.82
3584 4061 8.859236 ATGTATGTATATCTTTGAGCAGCAAT 57.141 30.769 0.00 0.00 36.15 3.56
3585 4062 7.933033 TGATGTATGTATATCTTTGAGCAGCAA 59.067 33.333 0.00 0.00 33.88 3.91
3586 4063 7.444299 TGATGTATGTATATCTTTGAGCAGCA 58.556 34.615 0.00 0.00 0.00 4.41
3587 4064 7.895975 TGATGTATGTATATCTTTGAGCAGC 57.104 36.000 0.00 0.00 0.00 5.25
3588 4065 9.486497 ACTTGATGTATGTATATCTTTGAGCAG 57.514 33.333 0.00 0.00 0.00 4.24
3589 4066 9.481340 GACTTGATGTATGTATATCTTTGAGCA 57.519 33.333 0.00 0.00 0.00 4.26
3590 4067 8.642885 CGACTTGATGTATGTATATCTTTGAGC 58.357 37.037 0.00 0.00 0.00 4.26
3591 4068 8.642885 GCGACTTGATGTATGTATATCTTTGAG 58.357 37.037 0.00 0.00 0.00 3.02
3592 4069 8.360390 AGCGACTTGATGTATGTATATCTTTGA 58.640 33.333 0.00 0.00 0.00 2.69
3593 4070 8.526218 AGCGACTTGATGTATGTATATCTTTG 57.474 34.615 0.00 0.00 0.00 2.77
3594 4071 8.982685 CAAGCGACTTGATGTATGTATATCTTT 58.017 33.333 12.43 0.00 43.42 2.52
3595 4072 7.116948 GCAAGCGACTTGATGTATGTATATCTT 59.883 37.037 19.38 0.00 43.42 2.40
3596 4073 6.587990 GCAAGCGACTTGATGTATGTATATCT 59.412 38.462 19.38 0.00 43.42 1.98
3597 4074 6.366061 TGCAAGCGACTTGATGTATGTATATC 59.634 38.462 19.38 0.00 43.42 1.63
3598 4075 6.223120 TGCAAGCGACTTGATGTATGTATAT 58.777 36.000 19.38 0.00 43.42 0.86
3599 4076 5.596845 TGCAAGCGACTTGATGTATGTATA 58.403 37.500 19.38 0.00 43.42 1.47
3600 4077 4.441792 TGCAAGCGACTTGATGTATGTAT 58.558 39.130 19.38 0.00 43.42 2.29
3601 4078 3.855858 TGCAAGCGACTTGATGTATGTA 58.144 40.909 19.38 0.00 43.42 2.29
3602 4079 2.698803 TGCAAGCGACTTGATGTATGT 58.301 42.857 19.38 0.00 43.42 2.29
3603 4080 3.745332 TTGCAAGCGACTTGATGTATG 57.255 42.857 19.38 0.00 43.42 2.39
3604 4081 3.753272 AGTTTGCAAGCGACTTGATGTAT 59.247 39.130 19.38 3.63 43.42 2.29
3605 4082 3.058983 CAGTTTGCAAGCGACTTGATGTA 60.059 43.478 19.38 4.01 43.42 2.29
3606 4083 1.949525 AGTTTGCAAGCGACTTGATGT 59.050 42.857 19.38 1.18 43.42 3.06
3607 4084 2.031769 TCAGTTTGCAAGCGACTTGATG 60.032 45.455 19.38 10.89 43.42 3.07
3608 4085 2.221169 TCAGTTTGCAAGCGACTTGAT 58.779 42.857 19.38 1.73 43.42 2.57
3609 4086 1.662517 TCAGTTTGCAAGCGACTTGA 58.337 45.000 19.38 3.41 43.42 3.02
3610 4087 2.111756 GTTCAGTTTGCAAGCGACTTG 58.888 47.619 7.70 13.18 43.57 3.16
3611 4088 1.065551 GGTTCAGTTTGCAAGCGACTT 59.934 47.619 7.70 0.00 0.00 3.01
3612 4089 0.663153 GGTTCAGTTTGCAAGCGACT 59.337 50.000 7.70 1.85 0.00 4.18
3613 4090 0.380378 TGGTTCAGTTTGCAAGCGAC 59.620 50.000 7.70 8.04 0.00 5.19
3614 4091 1.098869 TTGGTTCAGTTTGCAAGCGA 58.901 45.000 7.70 5.78 0.00 4.93
3615 4092 1.199624 GTTGGTTCAGTTTGCAAGCG 58.800 50.000 7.70 3.48 0.00 4.68
3616 4093 1.199624 CGTTGGTTCAGTTTGCAAGC 58.800 50.000 4.95 4.95 0.00 4.01
3617 4094 2.450160 GTCGTTGGTTCAGTTTGCAAG 58.550 47.619 0.00 0.00 0.00 4.01
3618 4095 1.133407 GGTCGTTGGTTCAGTTTGCAA 59.867 47.619 0.00 0.00 0.00 4.08
3619 4096 0.736053 GGTCGTTGGTTCAGTTTGCA 59.264 50.000 0.00 0.00 0.00 4.08
3620 4097 0.736053 TGGTCGTTGGTTCAGTTTGC 59.264 50.000 0.00 0.00 0.00 3.68
3621 4098 1.740585 TGTGGTCGTTGGTTCAGTTTG 59.259 47.619 0.00 0.00 0.00 2.93
3622 4099 1.741145 GTGTGGTCGTTGGTTCAGTTT 59.259 47.619 0.00 0.00 0.00 2.66
3623 4100 1.375551 GTGTGGTCGTTGGTTCAGTT 58.624 50.000 0.00 0.00 0.00 3.16
3624 4101 0.808453 CGTGTGGTCGTTGGTTCAGT 60.808 55.000 0.00 0.00 0.00 3.41
3625 4102 0.528901 TCGTGTGGTCGTTGGTTCAG 60.529 55.000 0.00 0.00 0.00 3.02
3626 4103 0.806884 GTCGTGTGGTCGTTGGTTCA 60.807 55.000 0.00 0.00 0.00 3.18
3627 4104 0.529119 AGTCGTGTGGTCGTTGGTTC 60.529 55.000 0.00 0.00 0.00 3.62
3628 4105 0.108041 AAGTCGTGTGGTCGTTGGTT 60.108 50.000 0.00 0.00 0.00 3.67
3629 4106 0.746063 TAAGTCGTGTGGTCGTTGGT 59.254 50.000 0.00 0.00 0.00 3.67
3630 4107 2.074547 ATAAGTCGTGTGGTCGTTGG 57.925 50.000 0.00 0.00 0.00 3.77
3631 4108 4.860352 TGATAATAAGTCGTGTGGTCGTTG 59.140 41.667 0.00 0.00 0.00 4.10
3632 4109 5.063180 TGATAATAAGTCGTGTGGTCGTT 57.937 39.130 0.00 0.00 0.00 3.85
3633 4110 4.707030 TGATAATAAGTCGTGTGGTCGT 57.293 40.909 0.00 0.00 0.00 4.34
3634 4111 4.378910 CGATGATAATAAGTCGTGTGGTCG 59.621 45.833 0.00 0.00 0.00 4.79
3635 4112 5.398711 GTCGATGATAATAAGTCGTGTGGTC 59.601 44.000 0.00 0.00 35.71 4.02
3636 4113 5.279384 GTCGATGATAATAAGTCGTGTGGT 58.721 41.667 0.00 0.00 35.71 4.16
3637 4114 4.378910 CGTCGATGATAATAAGTCGTGTGG 59.621 45.833 0.00 0.00 35.71 4.17
3638 4115 4.143803 GCGTCGATGATAATAAGTCGTGTG 60.144 45.833 9.31 0.00 35.71 3.82
3639 4116 3.973135 GCGTCGATGATAATAAGTCGTGT 59.027 43.478 9.31 0.00 35.71 4.49
3640 4117 3.972502 TGCGTCGATGATAATAAGTCGTG 59.027 43.478 9.31 0.00 35.71 4.35
3641 4118 3.973135 GTGCGTCGATGATAATAAGTCGT 59.027 43.478 9.31 0.00 35.71 4.34
3642 4119 3.972502 TGTGCGTCGATGATAATAAGTCG 59.027 43.478 9.31 0.00 35.55 4.18
3643 4120 4.738252 TGTGTGCGTCGATGATAATAAGTC 59.262 41.667 9.31 0.00 0.00 3.01
3644 4121 4.503007 GTGTGTGCGTCGATGATAATAAGT 59.497 41.667 9.31 0.00 0.00 2.24
3645 4122 4.502645 TGTGTGTGCGTCGATGATAATAAG 59.497 41.667 9.31 0.00 0.00 1.73
3646 4123 4.425520 TGTGTGTGCGTCGATGATAATAA 58.574 39.130 9.31 0.00 0.00 1.40
3647 4124 4.035278 TGTGTGTGCGTCGATGATAATA 57.965 40.909 9.31 0.00 0.00 0.98
3648 4125 2.860136 CTGTGTGTGCGTCGATGATAAT 59.140 45.455 9.31 0.00 0.00 1.28
3649 4126 2.258755 CTGTGTGTGCGTCGATGATAA 58.741 47.619 9.31 0.00 0.00 1.75
3650 4127 1.469079 CCTGTGTGTGCGTCGATGATA 60.469 52.381 9.31 0.00 0.00 2.15
3651 4128 0.737367 CCTGTGTGTGCGTCGATGAT 60.737 55.000 9.31 0.00 0.00 2.45
3652 4129 1.372872 CCTGTGTGTGCGTCGATGA 60.373 57.895 9.31 0.00 0.00 2.92
3653 4130 3.015293 GCCTGTGTGTGCGTCGATG 62.015 63.158 0.00 0.00 0.00 3.84
3654 4131 2.738521 GCCTGTGTGTGCGTCGAT 60.739 61.111 0.00 0.00 0.00 3.59
3655 4132 3.724914 TTGCCTGTGTGTGCGTCGA 62.725 57.895 0.00 0.00 0.00 4.20
3656 4133 2.818487 TTTGCCTGTGTGTGCGTCG 61.818 57.895 0.00 0.00 0.00 5.12
3657 4134 1.298339 GTTTGCCTGTGTGTGCGTC 60.298 57.895 0.00 0.00 0.00 5.19
3658 4135 1.383456 ATGTTTGCCTGTGTGTGCGT 61.383 50.000 0.00 0.00 0.00 5.24
3659 4136 0.935831 CATGTTTGCCTGTGTGTGCG 60.936 55.000 0.00 0.00 0.00 5.34
3660 4137 1.216941 GCATGTTTGCCTGTGTGTGC 61.217 55.000 0.00 0.00 43.38 4.57
3661 4138 0.935831 CGCATGTTTGCCTGTGTGTG 60.936 55.000 0.00 0.00 46.57 3.82
3662 4139 1.359833 CGCATGTTTGCCTGTGTGT 59.640 52.632 0.00 0.00 46.57 3.72
3663 4140 2.017783 GCGCATGTTTGCCTGTGTG 61.018 57.895 0.30 0.00 46.57 3.82
3664 4141 0.888736 TAGCGCATGTTTGCCTGTGT 60.889 50.000 11.47 0.00 46.57 3.72
3665 4142 0.179181 CTAGCGCATGTTTGCCTGTG 60.179 55.000 11.47 0.00 46.57 3.66
3666 4143 0.606401 ACTAGCGCATGTTTGCCTGT 60.606 50.000 11.47 0.00 46.57 4.00
3667 4144 1.368641 TACTAGCGCATGTTTGCCTG 58.631 50.000 11.47 0.00 46.57 4.85
3668 4145 2.107950 TTACTAGCGCATGTTTGCCT 57.892 45.000 11.47 0.00 46.57 4.75
3669 4146 2.161609 AGTTTACTAGCGCATGTTTGCC 59.838 45.455 11.47 0.00 46.57 4.52
3670 4147 3.125316 AGAGTTTACTAGCGCATGTTTGC 59.875 43.478 11.47 0.00 45.78 3.68
3671 4148 4.928661 AGAGTTTACTAGCGCATGTTTG 57.071 40.909 11.47 0.00 0.00 2.93
3672 4149 7.611213 AATAAGAGTTTACTAGCGCATGTTT 57.389 32.000 11.47 0.47 0.00 2.83
3673 4150 8.888579 ATAATAAGAGTTTACTAGCGCATGTT 57.111 30.769 11.47 0.00 0.00 2.71
3674 4151 8.888579 AATAATAAGAGTTTACTAGCGCATGT 57.111 30.769 11.47 10.59 0.00 3.21
3676 4153 9.976511 TGTAATAATAAGAGTTTACTAGCGCAT 57.023 29.630 11.47 0.00 0.00 4.73
3677 4154 9.976511 ATGTAATAATAAGAGTTTACTAGCGCA 57.023 29.630 11.47 0.00 0.00 6.09
3686 4163 8.993121 CGGCAGATCATGTAATAATAAGAGTTT 58.007 33.333 0.00 0.00 0.00 2.66
3687 4164 8.150945 ACGGCAGATCATGTAATAATAAGAGTT 58.849 33.333 0.00 0.00 0.00 3.01
3688 4165 7.600375 CACGGCAGATCATGTAATAATAAGAGT 59.400 37.037 0.00 0.00 0.00 3.24
3689 4166 7.600375 ACACGGCAGATCATGTAATAATAAGAG 59.400 37.037 0.00 0.00 0.00 2.85
3690 4167 7.384932 CACACGGCAGATCATGTAATAATAAGA 59.615 37.037 0.00 0.00 0.00 2.10
3691 4168 7.513132 CACACGGCAGATCATGTAATAATAAG 58.487 38.462 0.00 0.00 0.00 1.73
3692 4169 6.073276 GCACACGGCAGATCATGTAATAATAA 60.073 38.462 0.00 0.00 43.97 1.40
3693 4170 5.408299 GCACACGGCAGATCATGTAATAATA 59.592 40.000 0.00 0.00 43.97 0.98
3694 4171 4.214119 GCACACGGCAGATCATGTAATAAT 59.786 41.667 0.00 0.00 43.97 1.28
3695 4172 3.559655 GCACACGGCAGATCATGTAATAA 59.440 43.478 0.00 0.00 43.97 1.40
3696 4173 3.130633 GCACACGGCAGATCATGTAATA 58.869 45.455 0.00 0.00 43.97 0.98
3697 4174 1.942657 GCACACGGCAGATCATGTAAT 59.057 47.619 0.00 0.00 43.97 1.89
3698 4175 1.368641 GCACACGGCAGATCATGTAA 58.631 50.000 0.00 0.00 43.97 2.41
3699 4176 3.064079 GCACACGGCAGATCATGTA 57.936 52.632 0.00 0.00 43.97 2.29
3700 4177 3.895025 GCACACGGCAGATCATGT 58.105 55.556 0.00 0.00 43.97 3.21
3709 4186 2.280797 TTCTGGTCTGCACACGGC 60.281 61.111 0.00 0.00 45.13 5.68
3710 4187 0.249868 TTCTTCTGGTCTGCACACGG 60.250 55.000 0.00 0.00 0.00 4.94
3711 4188 0.861837 GTTCTTCTGGTCTGCACACG 59.138 55.000 0.00 0.00 0.00 4.49
3712 4189 0.861837 CGTTCTTCTGGTCTGCACAC 59.138 55.000 0.00 0.00 0.00 3.82
3713 4190 0.249868 CCGTTCTTCTGGTCTGCACA 60.250 55.000 0.00 0.00 0.00 4.57
3714 4191 0.249911 ACCGTTCTTCTGGTCTGCAC 60.250 55.000 0.00 0.00 31.16 4.57
3715 4192 0.249868 CACCGTTCTTCTGGTCTGCA 60.250 55.000 0.00 0.00 35.96 4.41
3716 4193 0.033504 TCACCGTTCTTCTGGTCTGC 59.966 55.000 0.00 0.00 35.96 4.26
3717 4194 1.341531 AGTCACCGTTCTTCTGGTCTG 59.658 52.381 0.00 0.00 35.96 3.51
3718 4195 1.705873 AGTCACCGTTCTTCTGGTCT 58.294 50.000 0.00 0.00 35.96 3.85
3719 4196 2.352519 GGTAGTCACCGTTCTTCTGGTC 60.353 54.545 0.00 0.00 35.96 4.02
3720 4197 1.617357 GGTAGTCACCGTTCTTCTGGT 59.383 52.381 0.00 0.00 39.66 4.00
3721 4198 2.365408 GGTAGTCACCGTTCTTCTGG 57.635 55.000 0.00 0.00 34.36 3.86
3731 4208 1.137872 CATCTCCAGCAGGTAGTCACC 59.862 57.143 0.00 0.00 46.19 4.02
3732 4209 1.137872 CCATCTCCAGCAGGTAGTCAC 59.862 57.143 0.00 0.00 35.89 3.67
3733 4210 1.489481 CCATCTCCAGCAGGTAGTCA 58.511 55.000 0.00 0.00 35.89 3.41
3734 4211 0.755686 CCCATCTCCAGCAGGTAGTC 59.244 60.000 0.00 0.00 35.89 2.59
3735 4212 0.339859 TCCCATCTCCAGCAGGTAGT 59.660 55.000 0.00 0.00 35.89 2.73
3736 4213 1.622811 GATCCCATCTCCAGCAGGTAG 59.377 57.143 0.00 0.00 35.89 3.18
3737 4214 1.062198 TGATCCCATCTCCAGCAGGTA 60.062 52.381 0.00 0.00 35.89 3.08
3738 4215 0.326904 TGATCCCATCTCCAGCAGGT 60.327 55.000 0.00 0.00 35.89 4.00
3739 4216 0.108207 GTGATCCCATCTCCAGCAGG 59.892 60.000 0.00 0.00 0.00 4.85
3740 4217 1.129917 AGTGATCCCATCTCCAGCAG 58.870 55.000 0.00 0.00 0.00 4.24
3741 4218 0.835276 CAGTGATCCCATCTCCAGCA 59.165 55.000 0.00 0.00 0.00 4.41
3742 4219 0.534652 GCAGTGATCCCATCTCCAGC 60.535 60.000 0.00 0.00 0.00 4.85
3743 4220 1.129917 AGCAGTGATCCCATCTCCAG 58.870 55.000 0.00 0.00 0.00 3.86
3744 4221 1.588239 AAGCAGTGATCCCATCTCCA 58.412 50.000 0.00 0.00 0.00 3.86
3745 4222 2.725221 AAAGCAGTGATCCCATCTCC 57.275 50.000 0.00 0.00 0.00 3.71
3746 4223 2.611292 CGAAAAGCAGTGATCCCATCTC 59.389 50.000 0.00 0.00 0.00 2.75
3747 4224 2.237143 TCGAAAAGCAGTGATCCCATCT 59.763 45.455 0.00 0.00 0.00 2.90
3748 4225 2.611292 CTCGAAAAGCAGTGATCCCATC 59.389 50.000 0.00 0.00 0.00 3.51
3749 4226 2.636830 CTCGAAAAGCAGTGATCCCAT 58.363 47.619 0.00 0.00 0.00 4.00
3750 4227 1.339055 CCTCGAAAAGCAGTGATCCCA 60.339 52.381 0.00 0.00 0.00 4.37
3751 4228 1.066143 TCCTCGAAAAGCAGTGATCCC 60.066 52.381 0.00 0.00 0.00 3.85
3752 4229 2.386661 TCCTCGAAAAGCAGTGATCC 57.613 50.000 0.00 0.00 0.00 3.36
3753 4230 2.031437 GCATCCTCGAAAAGCAGTGATC 59.969 50.000 0.00 0.00 0.00 2.92
3754 4231 2.012673 GCATCCTCGAAAAGCAGTGAT 58.987 47.619 0.00 0.00 0.00 3.06
3755 4232 1.442769 GCATCCTCGAAAAGCAGTGA 58.557 50.000 0.00 0.00 0.00 3.41
3756 4233 0.095935 CGCATCCTCGAAAAGCAGTG 59.904 55.000 0.00 0.00 0.00 3.66
3757 4234 1.021390 CCGCATCCTCGAAAAGCAGT 61.021 55.000 0.00 0.00 0.00 4.40
3758 4235 1.709147 CCCGCATCCTCGAAAAGCAG 61.709 60.000 0.00 0.00 0.00 4.24
3759 4236 1.745115 CCCGCATCCTCGAAAAGCA 60.745 57.895 0.00 0.00 0.00 3.91
3760 4237 2.472909 CCCCGCATCCTCGAAAAGC 61.473 63.158 0.00 0.00 0.00 3.51
3761 4238 1.819632 CCCCCGCATCCTCGAAAAG 60.820 63.158 0.00 0.00 0.00 2.27
3762 4239 1.266160 TACCCCCGCATCCTCGAAAA 61.266 55.000 0.00 0.00 0.00 2.29
3763 4240 1.266160 TTACCCCCGCATCCTCGAAA 61.266 55.000 0.00 0.00 0.00 3.46
3764 4241 1.266160 TTTACCCCCGCATCCTCGAA 61.266 55.000 0.00 0.00 0.00 3.71
3765 4242 1.266160 TTTTACCCCCGCATCCTCGA 61.266 55.000 0.00 0.00 0.00 4.04
3766 4243 0.814010 CTTTTACCCCCGCATCCTCG 60.814 60.000 0.00 0.00 0.00 4.63
3767 4244 3.095922 CTTTTACCCCCGCATCCTC 57.904 57.895 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.