Multiple sequence alignment - TraesCS6A01G231600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G231600 chr6A 100.000 4628 0 0 1 4628 437776247 437780874 0.000000e+00 8547.0
1 TraesCS6A01G231600 chr6A 97.103 3590 87 8 376 3950 355525992 355529579 0.000000e+00 6037.0
2 TraesCS6A01G231600 chr6A 96.415 3626 107 11 369 3973 328946145 328949768 0.000000e+00 5954.0
3 TraesCS6A01G231600 chr6A 89.635 521 21 14 467 959 55246015 55246530 2.350000e-177 632.0
4 TraesCS6A01G231600 chr6A 97.297 37 0 1 3936 3971 39572112 39572148 1.390000e-05 62.1
5 TraesCS6A01G231600 chr3A 96.391 3547 101 13 376 3896 528819419 528822964 0.000000e+00 5816.0
6 TraesCS6A01G231600 chr3A 95.613 661 26 1 3971 4628 661428142 661427482 0.000000e+00 1057.0
7 TraesCS6A01G231600 chr3A 85.294 102 13 2 3823 3923 17308262 17308162 2.280000e-18 104.0
8 TraesCS6A01G231600 chr6D 93.569 3623 168 22 376 3951 31240979 31244583 0.000000e+00 5339.0
9 TraesCS6A01G231600 chr6D 94.669 3395 124 19 591 3950 55486462 55483090 0.000000e+00 5214.0
10 TraesCS6A01G231600 chr6D 95.475 663 27 2 3969 4628 21957075 21957737 0.000000e+00 1055.0
11 TraesCS6A01G231600 chr3D 93.403 3623 168 30 376 3951 25770246 25766648 0.000000e+00 5301.0
12 TraesCS6A01G231600 chr3D 94.619 3401 132 22 591 3952 593416404 593419792 0.000000e+00 5219.0
13 TraesCS6A01G231600 chr5D 93.043 3622 167 25 375 3951 46433439 46437020 0.000000e+00 5214.0
14 TraesCS6A01G231600 chr5D 96.073 662 22 3 3971 4628 388582055 388582716 0.000000e+00 1075.0
15 TraesCS6A01G231600 chr5D 90.476 294 17 8 466 756 523435486 523435771 1.220000e-100 377.0
16 TraesCS6A01G231600 chr7B 94.891 3347 122 17 559 3876 105513103 105516429 0.000000e+00 5188.0
17 TraesCS6A01G231600 chr7B 86.607 112 11 4 3823 3932 64995024 64995133 2.260000e-23 121.0
18 TraesCS6A01G231600 chr7B 86.517 89 10 2 3826 3913 658955668 658955755 3.810000e-16 97.1
19 TraesCS6A01G231600 chr1B 92.682 3621 189 20 373 3951 6822736 6826322 0.000000e+00 5149.0
20 TraesCS6A01G231600 chr1A 97.520 2097 45 6 1862 3952 368720470 368718375 0.000000e+00 3578.0
21 TraesCS6A01G231600 chr1A 95.979 373 15 0 1 373 41000612 41000240 1.420000e-169 606.0
22 TraesCS6A01G231600 chr1A 84.459 148 14 7 376 516 354548788 354548933 2.250000e-28 137.0
23 TraesCS6A01G231600 chr1A 84.545 110 16 1 3823 3932 309972751 309972643 1.760000e-19 108.0
24 TraesCS6A01G231600 chr7D 95.613 661 26 2 3971 4628 117045636 117044976 0.000000e+00 1057.0
25 TraesCS6A01G231600 chr7D 95.613 661 26 2 3971 4628 164443287 164442627 0.000000e+00 1057.0
26 TraesCS6A01G231600 chr7D 95.613 661 26 2 3971 4628 462975031 462975691 0.000000e+00 1057.0
27 TraesCS6A01G231600 chr7D 96.247 373 14 0 1 373 463434366 463434738 3.060000e-171 612.0
28 TraesCS6A01G231600 chr7D 95.989 374 14 1 1 373 73072140 73072513 1.420000e-169 606.0
29 TraesCS6A01G231600 chr7D 95.979 373 15 0 1 373 447589100 447588728 1.420000e-169 606.0
30 TraesCS6A01G231600 chr1D 95.613 661 26 2 3971 4628 66498638 66497978 0.000000e+00 1057.0
31 TraesCS6A01G231600 chr1D 95.613 661 26 2 3971 4628 316706466 316705806 0.000000e+00 1057.0
32 TraesCS6A01G231600 chr1D 95.475 663 26 3 3969 4628 315452138 315451477 0.000000e+00 1055.0
33 TraesCS6A01G231600 chr1D 95.979 373 15 0 1 373 364422084 364421712 1.420000e-169 606.0
34 TraesCS6A01G231600 chr4A 88.974 653 37 5 376 993 245314058 245314710 0.000000e+00 774.0
35 TraesCS6A01G231600 chr4A 83.333 156 21 4 361 516 129395864 129396014 6.240000e-29 139.0
36 TraesCS6A01G231600 chr5A 88.208 653 42 5 376 993 488928577 488929229 0.000000e+00 747.0
37 TraesCS6A01G231600 chr5A 85.161 155 18 5 373 524 205474624 205474776 2.230000e-33 154.0
38 TraesCS6A01G231600 chr5A 82.895 152 18 5 376 524 136575856 136575710 3.760000e-26 130.0
39 TraesCS6A01G231600 chr5B 96.247 373 14 0 1 373 60646111 60646483 3.060000e-171 612.0
40 TraesCS6A01G231600 chr5B 87.778 360 30 6 379 724 14676970 14676611 4.310000e-110 409.0
41 TraesCS6A01G231600 chr5B 84.615 143 14 8 376 515 26150699 26150836 8.080000e-28 135.0
42 TraesCS6A01G231600 chr3B 95.979 373 15 0 1 373 814320878 814321250 1.420000e-169 606.0
43 TraesCS6A01G231600 chr3B 84.932 146 13 7 376 514 557826510 557826367 6.240000e-29 139.0
44 TraesCS6A01G231600 chr3B 83.221 149 22 3 372 519 272490098 272490244 2.910000e-27 134.0
45 TraesCS6A01G231600 chr2B 95.979 373 15 0 1 373 14292631 14293003 1.420000e-169 606.0
46 TraesCS6A01G231600 chr2B 95.733 375 16 0 1 375 398797750 398797376 5.120000e-169 604.0
47 TraesCS6A01G231600 chr7A 86.667 435 23 5 376 775 3164655 3165089 2.540000e-122 449.0
48 TraesCS6A01G231600 chr7A 84.459 148 14 7 376 516 615089912 615089767 2.250000e-28 137.0
49 TraesCS6A01G231600 chr7A 100.000 38 0 0 3935 3972 625872546 625872583 2.310000e-08 71.3
50 TraesCS6A01G231600 chr6B 86.928 153 14 4 376 525 693835490 693835341 2.860000e-37 167.0
51 TraesCS6A01G231600 chr4B 87.611 113 12 2 3824 3935 86850433 86850322 3.760000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G231600 chr6A 437776247 437780874 4627 False 8547 8547 100.000 1 4628 1 chr6A.!!$F5 4627
1 TraesCS6A01G231600 chr6A 355525992 355529579 3587 False 6037 6037 97.103 376 3950 1 chr6A.!!$F4 3574
2 TraesCS6A01G231600 chr6A 328946145 328949768 3623 False 5954 5954 96.415 369 3973 1 chr6A.!!$F3 3604
3 TraesCS6A01G231600 chr6A 55246015 55246530 515 False 632 632 89.635 467 959 1 chr6A.!!$F2 492
4 TraesCS6A01G231600 chr3A 528819419 528822964 3545 False 5816 5816 96.391 376 3896 1 chr3A.!!$F1 3520
5 TraesCS6A01G231600 chr3A 661427482 661428142 660 True 1057 1057 95.613 3971 4628 1 chr3A.!!$R2 657
6 TraesCS6A01G231600 chr6D 31240979 31244583 3604 False 5339 5339 93.569 376 3951 1 chr6D.!!$F2 3575
7 TraesCS6A01G231600 chr6D 55483090 55486462 3372 True 5214 5214 94.669 591 3950 1 chr6D.!!$R1 3359
8 TraesCS6A01G231600 chr6D 21957075 21957737 662 False 1055 1055 95.475 3969 4628 1 chr6D.!!$F1 659
9 TraesCS6A01G231600 chr3D 25766648 25770246 3598 True 5301 5301 93.403 376 3951 1 chr3D.!!$R1 3575
10 TraesCS6A01G231600 chr3D 593416404 593419792 3388 False 5219 5219 94.619 591 3952 1 chr3D.!!$F1 3361
11 TraesCS6A01G231600 chr5D 46433439 46437020 3581 False 5214 5214 93.043 375 3951 1 chr5D.!!$F1 3576
12 TraesCS6A01G231600 chr5D 388582055 388582716 661 False 1075 1075 96.073 3971 4628 1 chr5D.!!$F2 657
13 TraesCS6A01G231600 chr7B 105513103 105516429 3326 False 5188 5188 94.891 559 3876 1 chr7B.!!$F2 3317
14 TraesCS6A01G231600 chr1B 6822736 6826322 3586 False 5149 5149 92.682 373 3951 1 chr1B.!!$F1 3578
15 TraesCS6A01G231600 chr1A 368718375 368720470 2095 True 3578 3578 97.520 1862 3952 1 chr1A.!!$R3 2090
16 TraesCS6A01G231600 chr7D 117044976 117045636 660 True 1057 1057 95.613 3971 4628 1 chr7D.!!$R1 657
17 TraesCS6A01G231600 chr7D 164442627 164443287 660 True 1057 1057 95.613 3971 4628 1 chr7D.!!$R2 657
18 TraesCS6A01G231600 chr7D 462975031 462975691 660 False 1057 1057 95.613 3971 4628 1 chr7D.!!$F2 657
19 TraesCS6A01G231600 chr1D 66497978 66498638 660 True 1057 1057 95.613 3971 4628 1 chr1D.!!$R1 657
20 TraesCS6A01G231600 chr1D 316705806 316706466 660 True 1057 1057 95.613 3971 4628 1 chr1D.!!$R3 657
21 TraesCS6A01G231600 chr1D 315451477 315452138 661 True 1055 1055 95.475 3969 4628 1 chr1D.!!$R2 659
22 TraesCS6A01G231600 chr4A 245314058 245314710 652 False 774 774 88.974 376 993 1 chr4A.!!$F2 617
23 TraesCS6A01G231600 chr5A 488928577 488929229 652 False 747 747 88.208 376 993 1 chr5A.!!$F2 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.036577 CAGCAGTAGGAGCAGCTTGT 60.037 55.0 0.00 0.0 34.61 3.16 F
1160 1228 0.100325 CTGCGTTGTTCTGCACCAAA 59.900 50.0 0.00 0.0 35.90 3.28 F
2014 2096 0.253160 TGCCACCCCTATCCTCAAGT 60.253 55.0 0.00 0.0 0.00 3.16 F
2294 2382 0.674895 GGTTCAGTCAGCGCCTCAAT 60.675 55.0 2.29 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1383 1452 0.252881 ATGGGAAGGAGCAGGAGACA 60.253 55.0 0.0 0.0 0.00 3.41 R
2926 3025 0.320771 GTTGTGGACGGACTGCTCAT 60.321 55.0 0.0 0.0 0.00 2.90 R
3310 3410 0.466124 GCTAGGAGCCCACTTTCGAT 59.534 55.0 0.0 0.0 34.48 3.59 R
4094 4219 0.702316 AACGGGTAGGGGCAAATCTT 59.298 50.0 0.0 0.0 0.00 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.392336 ATAGCAGCAGTAGGAGCAGC 59.608 55.000 0.00 0.00 43.76 5.25
20 21 2.583520 GCAGCAGTAGGAGCAGCT 59.416 61.111 0.00 0.00 40.76 4.24
21 22 1.078567 GCAGCAGTAGGAGCAGCTT 60.079 57.895 0.00 0.00 40.76 3.74
22 23 1.367599 GCAGCAGTAGGAGCAGCTTG 61.368 60.000 0.00 0.00 40.76 4.01
23 24 0.036577 CAGCAGTAGGAGCAGCTTGT 60.037 55.000 0.00 0.00 34.61 3.16
24 25 1.205655 CAGCAGTAGGAGCAGCTTGTA 59.794 52.381 0.00 0.00 34.61 2.41
25 26 1.480137 AGCAGTAGGAGCAGCTTGTAG 59.520 52.381 0.00 0.00 32.52 2.74
26 27 1.933247 CAGTAGGAGCAGCTTGTAGC 58.067 55.000 0.00 0.00 42.84 3.58
27 28 1.205655 CAGTAGGAGCAGCTTGTAGCA 59.794 52.381 0.00 0.00 45.56 3.49
28 29 1.902508 AGTAGGAGCAGCTTGTAGCAA 59.097 47.619 0.00 0.00 45.56 3.91
29 30 2.003301 GTAGGAGCAGCTTGTAGCAAC 58.997 52.381 0.00 0.00 45.56 4.17
30 31 0.689623 AGGAGCAGCTTGTAGCAACT 59.310 50.000 0.00 0.00 45.56 3.16
31 32 1.082690 GGAGCAGCTTGTAGCAACTC 58.917 55.000 0.00 10.66 45.56 3.01
32 33 1.609061 GGAGCAGCTTGTAGCAACTCA 60.609 52.381 17.20 0.00 45.56 3.41
33 34 2.354259 GAGCAGCTTGTAGCAACTCAT 58.646 47.619 0.00 0.00 45.56 2.90
34 35 2.351111 GAGCAGCTTGTAGCAACTCATC 59.649 50.000 0.00 0.00 45.56 2.92
35 36 2.079158 GCAGCTTGTAGCAACTCATCA 58.921 47.619 1.09 0.00 45.56 3.07
36 37 2.681848 GCAGCTTGTAGCAACTCATCAT 59.318 45.455 1.09 0.00 45.56 2.45
37 38 3.873361 GCAGCTTGTAGCAACTCATCATA 59.127 43.478 1.09 0.00 45.56 2.15
38 39 4.514441 GCAGCTTGTAGCAACTCATCATAT 59.486 41.667 1.09 0.00 45.56 1.78
39 40 5.698089 GCAGCTTGTAGCAACTCATCATATA 59.302 40.000 1.09 0.00 45.56 0.86
40 41 6.128607 GCAGCTTGTAGCAACTCATCATATAG 60.129 42.308 1.09 0.00 45.56 1.31
41 42 5.931146 AGCTTGTAGCAACTCATCATATAGC 59.069 40.000 1.09 0.00 45.56 2.97
42 43 5.698089 GCTTGTAGCAACTCATCATATAGCA 59.302 40.000 0.00 0.00 41.89 3.49
43 44 6.128607 GCTTGTAGCAACTCATCATATAGCAG 60.129 42.308 0.00 0.00 41.89 4.24
44 45 5.233225 TGTAGCAACTCATCATATAGCAGC 58.767 41.667 0.00 0.00 0.00 5.25
45 46 4.347360 AGCAACTCATCATATAGCAGCA 57.653 40.909 0.00 0.00 0.00 4.41
46 47 4.316645 AGCAACTCATCATATAGCAGCAG 58.683 43.478 0.00 0.00 0.00 4.24
47 48 3.120269 GCAACTCATCATATAGCAGCAGC 60.120 47.826 0.00 0.00 42.56 5.25
48 49 4.062991 CAACTCATCATATAGCAGCAGCA 58.937 43.478 3.17 0.00 45.49 4.41
49 50 3.927854 ACTCATCATATAGCAGCAGCAG 58.072 45.455 3.17 0.00 45.49 4.24
50 51 3.263261 CTCATCATATAGCAGCAGCAGG 58.737 50.000 3.17 0.00 45.49 4.85
51 52 2.901839 TCATCATATAGCAGCAGCAGGA 59.098 45.455 3.17 0.00 45.49 3.86
52 53 3.056035 TCATCATATAGCAGCAGCAGGAG 60.056 47.826 3.17 0.00 45.49 3.69
53 54 1.001746 TCATATAGCAGCAGCAGGAGC 59.998 52.381 3.17 0.00 45.49 4.70
54 55 1.054231 ATATAGCAGCAGCAGGAGCA 58.946 50.000 3.17 0.00 45.49 4.26
55 56 0.391966 TATAGCAGCAGCAGGAGCAG 59.608 55.000 3.17 0.00 45.49 4.24
62 63 2.764944 CAGCAGGAGCAGCTTGTAG 58.235 57.895 0.00 0.00 45.49 2.74
63 64 1.078567 AGCAGGAGCAGCTTGTAGC 60.079 57.895 0.00 0.00 45.49 3.58
64 65 1.376424 GCAGGAGCAGCTTGTAGCA 60.376 57.895 0.00 0.00 45.56 3.49
65 66 0.957395 GCAGGAGCAGCTTGTAGCAA 60.957 55.000 0.00 0.00 45.56 3.91
66 67 0.801251 CAGGAGCAGCTTGTAGCAAC 59.199 55.000 0.00 0.00 45.56 4.17
67 68 0.689623 AGGAGCAGCTTGTAGCAACT 59.310 50.000 0.00 0.00 45.56 3.16
68 69 1.082690 GGAGCAGCTTGTAGCAACTC 58.917 55.000 0.00 10.66 45.56 3.01
69 70 1.609061 GGAGCAGCTTGTAGCAACTCA 60.609 52.381 17.20 0.00 45.56 3.41
70 71 2.354259 GAGCAGCTTGTAGCAACTCAT 58.646 47.619 0.00 0.00 45.56 2.90
71 72 2.351111 GAGCAGCTTGTAGCAACTCATC 59.649 50.000 0.00 0.00 45.56 2.92
72 73 2.079158 GCAGCTTGTAGCAACTCATCA 58.921 47.619 1.09 0.00 45.56 3.07
73 74 2.681848 GCAGCTTGTAGCAACTCATCAT 59.318 45.455 1.09 0.00 45.56 2.45
74 75 3.873361 GCAGCTTGTAGCAACTCATCATA 59.127 43.478 1.09 0.00 45.56 2.15
75 76 4.514441 GCAGCTTGTAGCAACTCATCATAT 59.486 41.667 1.09 0.00 45.56 1.78
76 77 5.698089 GCAGCTTGTAGCAACTCATCATATA 59.302 40.000 1.09 0.00 45.56 0.86
77 78 6.128607 GCAGCTTGTAGCAACTCATCATATAG 60.129 42.308 1.09 0.00 45.56 1.31
78 79 5.931146 AGCTTGTAGCAACTCATCATATAGC 59.069 40.000 1.09 0.00 45.56 2.97
79 80 5.698089 GCTTGTAGCAACTCATCATATAGCA 59.302 40.000 0.00 0.00 41.89 3.49
80 81 6.128607 GCTTGTAGCAACTCATCATATAGCAG 60.129 42.308 0.00 0.00 41.89 4.24
81 82 5.233225 TGTAGCAACTCATCATATAGCAGC 58.767 41.667 0.00 0.00 0.00 5.25
82 83 4.347360 AGCAACTCATCATATAGCAGCA 57.653 40.909 0.00 0.00 0.00 4.41
83 84 4.316645 AGCAACTCATCATATAGCAGCAG 58.683 43.478 0.00 0.00 0.00 4.24
84 85 3.120269 GCAACTCATCATATAGCAGCAGC 60.120 47.826 0.00 0.00 42.56 5.25
85 86 4.062991 CAACTCATCATATAGCAGCAGCA 58.937 43.478 3.17 0.00 45.49 4.41
86 87 3.927854 ACTCATCATATAGCAGCAGCAG 58.072 45.455 3.17 0.00 45.49 4.24
87 88 3.324268 ACTCATCATATAGCAGCAGCAGT 59.676 43.478 3.17 0.00 45.49 4.40
88 89 4.525874 ACTCATCATATAGCAGCAGCAGTA 59.474 41.667 3.17 0.00 45.49 2.74
89 90 5.069501 TCATCATATAGCAGCAGCAGTAG 57.930 43.478 3.17 0.00 45.49 2.57
90 91 3.309961 TCATATAGCAGCAGCAGTAGC 57.690 47.619 3.17 0.00 45.49 3.58
107 108 7.670009 GCAGTAGCTCATAGAAATTCATCAT 57.330 36.000 0.00 0.00 37.91 2.45
108 109 8.768957 GCAGTAGCTCATAGAAATTCATCATA 57.231 34.615 0.00 0.00 37.91 2.15
109 110 9.381033 GCAGTAGCTCATAGAAATTCATCATAT 57.619 33.333 0.00 0.00 37.91 1.78
114 115 9.602568 AGCTCATAGAAATTCATCATATAGCAG 57.397 33.333 0.00 0.00 0.00 4.24
115 116 9.381033 GCTCATAGAAATTCATCATATAGCAGT 57.619 33.333 0.00 0.00 0.00 4.40
120 121 8.774890 AGAAATTCATCATATAGCAGTAGCAG 57.225 34.615 0.00 0.00 45.49 4.24
121 122 6.981762 AATTCATCATATAGCAGTAGCAGC 57.018 37.500 0.00 0.00 45.49 5.25
122 123 5.473066 TTCATCATATAGCAGTAGCAGCA 57.527 39.130 0.00 0.00 45.49 4.41
123 124 5.069501 TCATCATATAGCAGTAGCAGCAG 57.930 43.478 0.00 0.00 45.49 4.24
124 125 3.309961 TCATATAGCAGTAGCAGCAGC 57.690 47.619 0.00 0.00 45.49 5.25
135 136 2.777969 GCAGCAGCTCATAGCAACT 58.222 52.632 0.00 0.00 45.56 3.16
136 137 0.656785 GCAGCAGCTCATAGCAACTC 59.343 55.000 0.00 0.00 45.56 3.01
137 138 2.010544 GCAGCAGCTCATAGCAACTCA 61.011 52.381 0.00 0.00 45.56 3.41
138 139 2.562635 CAGCAGCTCATAGCAACTCAT 58.437 47.619 0.00 0.00 45.56 2.90
139 140 2.544686 CAGCAGCTCATAGCAACTCATC 59.455 50.000 0.00 0.00 45.56 2.92
140 141 2.169978 AGCAGCTCATAGCAACTCATCA 59.830 45.455 1.22 0.00 45.56 3.07
141 142 3.139850 GCAGCTCATAGCAACTCATCAT 58.860 45.455 1.22 0.00 45.56 2.45
142 143 4.040095 AGCAGCTCATAGCAACTCATCATA 59.960 41.667 1.22 0.00 45.56 2.15
143 144 4.936411 GCAGCTCATAGCAACTCATCATAT 59.064 41.667 1.22 0.00 45.56 1.78
144 145 5.411977 GCAGCTCATAGCAACTCATCATATT 59.588 40.000 1.22 0.00 45.56 1.28
145 146 6.620949 GCAGCTCATAGCAACTCATCATATTG 60.621 42.308 1.22 0.00 45.56 1.90
146 147 5.411977 AGCTCATAGCAACTCATCATATTGC 59.588 40.000 1.22 0.00 45.56 3.56
150 151 3.703286 GCAACTCATCATATTGCAGCA 57.297 42.857 0.00 0.00 46.37 4.41
151 152 3.629058 GCAACTCATCATATTGCAGCAG 58.371 45.455 0.00 0.00 46.37 4.24
152 153 3.629058 CAACTCATCATATTGCAGCAGC 58.371 45.455 0.00 0.00 42.57 5.25
167 168 2.402640 GCAGCAGCTCATAGCAATTC 57.597 50.000 0.00 0.00 45.56 2.17
168 169 1.674441 GCAGCAGCTCATAGCAATTCA 59.326 47.619 0.00 0.00 45.56 2.57
169 170 2.293677 GCAGCAGCTCATAGCAATTCAT 59.706 45.455 0.00 0.00 45.56 2.57
170 171 3.609644 GCAGCAGCTCATAGCAATTCATC 60.610 47.826 0.00 0.00 45.56 2.92
171 172 3.564225 CAGCAGCTCATAGCAATTCATCA 59.436 43.478 0.00 0.00 45.56 3.07
172 173 4.216472 CAGCAGCTCATAGCAATTCATCAT 59.784 41.667 0.00 0.00 45.56 2.45
173 174 5.411669 CAGCAGCTCATAGCAATTCATCATA 59.588 40.000 0.00 0.00 45.56 2.15
174 175 6.094186 CAGCAGCTCATAGCAATTCATCATAT 59.906 38.462 0.00 0.00 45.56 1.78
175 176 7.280205 CAGCAGCTCATAGCAATTCATCATATA 59.720 37.037 0.00 0.00 45.56 0.86
176 177 7.496263 AGCAGCTCATAGCAATTCATCATATAG 59.504 37.037 1.22 0.00 45.56 1.31
177 178 7.631822 CAGCTCATAGCAATTCATCATATAGC 58.368 38.462 1.22 0.00 45.56 2.97
178 179 7.280205 CAGCTCATAGCAATTCATCATATAGCA 59.720 37.037 1.22 0.00 45.56 3.49
179 180 7.496263 AGCTCATAGCAATTCATCATATAGCAG 59.504 37.037 1.22 0.00 45.56 4.24
180 181 7.549615 TCATAGCAATTCATCATATAGCAGC 57.450 36.000 0.00 0.00 0.00 5.25
181 182 7.107542 TCATAGCAATTCATCATATAGCAGCA 58.892 34.615 0.00 0.00 0.00 4.41
182 183 5.881777 AGCAATTCATCATATAGCAGCAG 57.118 39.130 0.00 0.00 0.00 4.24
183 184 4.156190 AGCAATTCATCATATAGCAGCAGC 59.844 41.667 0.00 0.00 42.56 5.25
184 185 4.082949 GCAATTCATCATATAGCAGCAGCA 60.083 41.667 3.17 0.00 45.49 4.41
185 186 5.631992 CAATTCATCATATAGCAGCAGCAG 58.368 41.667 3.17 0.00 45.49 4.24
186 187 3.329929 TCATCATATAGCAGCAGCAGG 57.670 47.619 3.17 0.00 45.49 4.85
187 188 2.901839 TCATCATATAGCAGCAGCAGGA 59.098 45.455 3.17 0.00 45.49 3.86
188 189 3.056035 TCATCATATAGCAGCAGCAGGAG 60.056 47.826 3.17 0.00 45.49 3.69
189 190 1.001746 TCATATAGCAGCAGCAGGAGC 59.998 52.381 3.17 0.00 45.49 4.70
190 191 1.054231 ATATAGCAGCAGCAGGAGCA 58.946 50.000 3.17 0.00 45.49 4.26
191 192 0.391966 TATAGCAGCAGCAGGAGCAG 59.608 55.000 3.17 0.00 45.49 4.24
198 199 3.292426 CAGCAGGAGCAGCTCATAG 57.708 57.895 24.09 13.32 45.49 2.23
199 200 0.881159 CAGCAGGAGCAGCTCATAGC 60.881 60.000 24.09 21.55 45.49 2.97
200 201 1.145598 GCAGGAGCAGCTCATAGCA 59.854 57.895 24.09 0.00 45.56 3.49
201 202 0.463295 GCAGGAGCAGCTCATAGCAA 60.463 55.000 24.09 0.00 45.56 3.91
202 203 1.814634 GCAGGAGCAGCTCATAGCAAT 60.815 52.381 24.09 0.00 45.56 3.56
203 204 1.874231 CAGGAGCAGCTCATAGCAATG 59.126 52.381 24.09 6.74 45.56 2.82
204 205 0.592148 GGAGCAGCTCATAGCAATGC 59.408 55.000 24.09 0.00 45.56 3.56
205 206 1.306148 GAGCAGCTCATAGCAATGCA 58.694 50.000 18.17 0.00 45.56 3.96
206 207 1.880675 GAGCAGCTCATAGCAATGCAT 59.119 47.619 18.17 0.00 45.56 3.96
207 208 1.880675 AGCAGCTCATAGCAATGCATC 59.119 47.619 8.35 0.00 45.56 3.91
208 209 1.607148 GCAGCTCATAGCAATGCATCA 59.393 47.619 8.35 0.00 45.56 3.07
209 210 2.229062 GCAGCTCATAGCAATGCATCAT 59.771 45.455 8.35 0.00 45.56 2.45
210 211 3.439129 GCAGCTCATAGCAATGCATCATA 59.561 43.478 8.35 0.00 45.56 2.15
211 212 4.096532 GCAGCTCATAGCAATGCATCATAT 59.903 41.667 8.35 0.00 45.56 1.78
212 213 5.296035 GCAGCTCATAGCAATGCATCATATA 59.704 40.000 8.35 0.00 45.56 0.86
213 214 6.511929 GCAGCTCATAGCAATGCATCATATAG 60.512 42.308 8.35 0.77 45.56 1.31
214 215 5.527951 AGCTCATAGCAATGCATCATATAGC 59.472 40.000 8.35 9.68 45.56 2.97
215 216 5.296035 GCTCATAGCAATGCATCATATAGCA 59.704 40.000 8.35 0.00 42.48 3.49
216 217 6.511929 GCTCATAGCAATGCATCATATAGCAG 60.512 42.308 8.35 0.00 41.96 4.24
217 218 5.296035 TCATAGCAATGCATCATATAGCAGC 59.704 40.000 8.35 0.00 44.94 5.25
218 219 3.418047 AGCAATGCATCATATAGCAGCA 58.582 40.909 8.35 0.00 44.94 4.41
219 220 3.824443 AGCAATGCATCATATAGCAGCAA 59.176 39.130 8.35 0.00 44.94 3.91
220 221 3.918591 GCAATGCATCATATAGCAGCAAC 59.081 43.478 0.00 0.00 44.94 4.17
221 222 4.557895 GCAATGCATCATATAGCAGCAACA 60.558 41.667 0.00 0.00 44.94 3.33
222 223 5.154222 CAATGCATCATATAGCAGCAACAG 58.846 41.667 0.00 0.00 44.94 3.16
223 224 4.075963 TGCATCATATAGCAGCAACAGA 57.924 40.909 0.00 0.00 35.51 3.41
224 225 4.453751 TGCATCATATAGCAGCAACAGAA 58.546 39.130 0.00 0.00 35.51 3.02
225 226 4.514066 TGCATCATATAGCAGCAACAGAAG 59.486 41.667 0.00 0.00 35.51 2.85
226 227 4.613167 GCATCATATAGCAGCAACAGAAGC 60.613 45.833 0.00 0.00 0.00 3.86
227 228 4.141233 TCATATAGCAGCAACAGAAGCA 57.859 40.909 0.00 0.00 0.00 3.91
228 229 4.516323 TCATATAGCAGCAACAGAAGCAA 58.484 39.130 0.00 0.00 0.00 3.91
229 230 4.333649 TCATATAGCAGCAACAGAAGCAAC 59.666 41.667 0.00 0.00 0.00 4.17
230 231 2.260844 TAGCAGCAACAGAAGCAACT 57.739 45.000 0.00 0.00 0.00 3.16
231 232 0.950116 AGCAGCAACAGAAGCAACTC 59.050 50.000 0.00 0.00 0.00 3.01
232 233 0.664761 GCAGCAACAGAAGCAACTCA 59.335 50.000 0.00 0.00 0.00 3.41
233 234 1.268899 GCAGCAACAGAAGCAACTCAT 59.731 47.619 0.00 0.00 0.00 2.90
234 235 2.485426 GCAGCAACAGAAGCAACTCATA 59.515 45.455 0.00 0.00 0.00 2.15
235 236 3.425892 GCAGCAACAGAAGCAACTCATAG 60.426 47.826 0.00 0.00 0.00 2.23
236 237 3.999001 CAGCAACAGAAGCAACTCATAGA 59.001 43.478 0.00 0.00 0.00 1.98
237 238 4.453478 CAGCAACAGAAGCAACTCATAGAA 59.547 41.667 0.00 0.00 0.00 2.10
238 239 5.049198 CAGCAACAGAAGCAACTCATAGAAA 60.049 40.000 0.00 0.00 0.00 2.52
239 240 5.709164 AGCAACAGAAGCAACTCATAGAAAT 59.291 36.000 0.00 0.00 0.00 2.17
240 241 6.208204 AGCAACAGAAGCAACTCATAGAAATT 59.792 34.615 0.00 0.00 0.00 1.82
241 242 6.525976 GCAACAGAAGCAACTCATAGAAATTC 59.474 38.462 0.00 0.00 0.00 2.17
242 243 7.587629 CAACAGAAGCAACTCATAGAAATTCA 58.412 34.615 0.00 0.00 0.00 2.57
243 244 7.934855 ACAGAAGCAACTCATAGAAATTCAT 57.065 32.000 0.00 0.00 0.00 2.57
244 245 7.983307 ACAGAAGCAACTCATAGAAATTCATC 58.017 34.615 0.00 0.00 0.00 2.92
245 246 7.124471 CAGAAGCAACTCATAGAAATTCATCG 58.876 38.462 0.00 0.00 0.00 3.84
246 247 6.820656 AGAAGCAACTCATAGAAATTCATCGT 59.179 34.615 0.00 0.00 0.00 3.73
247 248 7.981789 AGAAGCAACTCATAGAAATTCATCGTA 59.018 33.333 0.00 0.00 0.00 3.43
248 249 8.668510 AAGCAACTCATAGAAATTCATCGTAT 57.331 30.769 0.00 0.00 0.00 3.06
249 250 9.764363 AAGCAACTCATAGAAATTCATCGTATA 57.236 29.630 0.00 0.00 0.00 1.47
250 251 9.416794 AGCAACTCATAGAAATTCATCGTATAG 57.583 33.333 0.00 0.00 0.00 1.31
251 252 9.197694 GCAACTCATAGAAATTCATCGTATAGT 57.802 33.333 0.00 0.00 0.00 2.12
253 254 9.698309 AACTCATAGAAATTCATCGTATAGTGG 57.302 33.333 0.00 0.00 0.00 4.00
254 255 9.078990 ACTCATAGAAATTCATCGTATAGTGGA 57.921 33.333 0.00 0.00 0.00 4.02
257 258 9.860898 CATAGAAATTCATCGTATAGTGGATCA 57.139 33.333 0.00 0.00 0.00 2.92
259 260 8.183104 AGAAATTCATCGTATAGTGGATCAGA 57.817 34.615 0.00 0.00 0.00 3.27
260 261 8.642432 AGAAATTCATCGTATAGTGGATCAGAA 58.358 33.333 0.00 0.00 0.00 3.02
261 262 9.429359 GAAATTCATCGTATAGTGGATCAGAAT 57.571 33.333 0.00 0.00 0.00 2.40
262 263 8.768957 AATTCATCGTATAGTGGATCAGAATG 57.231 34.615 0.00 0.00 37.54 2.67
303 304 1.912043 AGGAGATCCTCACCTTGTTGG 59.088 52.381 0.00 0.00 44.77 3.77
304 305 1.909302 GGAGATCCTCACCTTGTTGGA 59.091 52.381 0.00 0.00 39.71 3.53
305 306 2.507471 GGAGATCCTCACCTTGTTGGAT 59.493 50.000 0.00 0.00 41.49 3.41
306 307 3.539604 GAGATCCTCACCTTGTTGGATG 58.460 50.000 0.00 0.00 39.19 3.51
307 308 3.184628 AGATCCTCACCTTGTTGGATGA 58.815 45.455 0.00 0.00 39.19 2.92
308 309 3.199508 AGATCCTCACCTTGTTGGATGAG 59.800 47.826 0.00 0.00 39.19 2.90
309 310 1.003580 TCCTCACCTTGTTGGATGAGC 59.996 52.381 0.00 0.00 39.97 4.26
310 311 1.004044 CCTCACCTTGTTGGATGAGCT 59.996 52.381 0.00 0.00 39.97 4.09
311 312 2.354259 CTCACCTTGTTGGATGAGCTC 58.646 52.381 6.82 6.82 37.26 4.09
312 313 1.699083 TCACCTTGTTGGATGAGCTCA 59.301 47.619 20.79 20.79 39.71 4.26
313 314 2.306805 TCACCTTGTTGGATGAGCTCAT 59.693 45.455 29.09 29.09 39.71 2.90
324 325 2.105006 TGAGCTCATCCTTCAACAGC 57.895 50.000 13.74 0.00 0.00 4.40
325 326 1.348696 TGAGCTCATCCTTCAACAGCA 59.651 47.619 13.74 0.00 32.17 4.41
326 327 1.736681 GAGCTCATCCTTCAACAGCAC 59.263 52.381 9.40 0.00 32.17 4.40
327 328 0.807496 GCTCATCCTTCAACAGCACC 59.193 55.000 0.00 0.00 0.00 5.01
328 329 1.612726 GCTCATCCTTCAACAGCACCT 60.613 52.381 0.00 0.00 0.00 4.00
329 330 2.354259 CTCATCCTTCAACAGCACCTC 58.646 52.381 0.00 0.00 0.00 3.85
330 331 1.699083 TCATCCTTCAACAGCACCTCA 59.301 47.619 0.00 0.00 0.00 3.86
331 332 2.106338 TCATCCTTCAACAGCACCTCAA 59.894 45.455 0.00 0.00 0.00 3.02
332 333 2.260844 TCCTTCAACAGCACCTCAAG 57.739 50.000 0.00 0.00 0.00 3.02
333 334 1.202806 TCCTTCAACAGCACCTCAAGG 60.203 52.381 0.00 0.00 42.17 3.61
334 335 0.595095 CTTCAACAGCACCTCAAGGC 59.405 55.000 0.00 0.00 39.32 4.35
335 336 0.823356 TTCAACAGCACCTCAAGGCC 60.823 55.000 0.00 0.00 39.32 5.19
336 337 1.529010 CAACAGCACCTCAAGGCCA 60.529 57.895 5.01 0.00 39.32 5.36
337 338 0.896940 CAACAGCACCTCAAGGCCAT 60.897 55.000 5.01 0.00 39.32 4.40
338 339 0.896940 AACAGCACCTCAAGGCCATG 60.897 55.000 5.01 2.45 39.32 3.66
339 340 2.050350 CAGCACCTCAAGGCCATGG 61.050 63.158 7.63 7.63 39.32 3.66
340 341 3.455469 GCACCTCAAGGCCATGGC 61.455 66.667 29.47 29.47 39.32 4.40
350 351 2.123982 GCCATGGCCTGGGAAGAG 60.124 66.667 27.24 0.00 46.06 2.85
351 352 2.599597 CCATGGCCTGGGAAGAGG 59.400 66.667 3.32 0.00 41.82 3.69
352 353 2.599597 CATGGCCTGGGAAGAGGG 59.400 66.667 3.32 0.00 33.17 4.30
353 354 2.697644 ATGGCCTGGGAAGAGGGG 60.698 66.667 3.32 0.00 33.17 4.79
354 355 3.287954 ATGGCCTGGGAAGAGGGGA 62.288 63.158 3.32 0.00 33.17 4.81
355 356 3.093172 GGCCTGGGAAGAGGGGAG 61.093 72.222 0.00 0.00 33.17 4.30
356 357 3.093172 GCCTGGGAAGAGGGGAGG 61.093 72.222 0.00 0.00 33.17 4.30
357 358 2.367512 CCTGGGAAGAGGGGAGGG 60.368 72.222 0.00 0.00 0.00 4.30
358 359 2.367512 CTGGGAAGAGGGGAGGGG 60.368 72.222 0.00 0.00 0.00 4.79
359 360 4.038804 TGGGAAGAGGGGAGGGGG 62.039 72.222 0.00 0.00 0.00 5.40
360 361 4.040198 GGGAAGAGGGGAGGGGGT 62.040 72.222 0.00 0.00 0.00 4.95
361 362 2.654204 GGGAAGAGGGGAGGGGGTA 61.654 68.421 0.00 0.00 0.00 3.69
362 363 1.638542 GGAAGAGGGGAGGGGGTAT 59.361 63.158 0.00 0.00 0.00 2.73
363 364 0.872449 GGAAGAGGGGAGGGGGTATA 59.128 60.000 0.00 0.00 0.00 1.47
364 365 1.224905 GGAAGAGGGGAGGGGGTATAA 59.775 57.143 0.00 0.00 0.00 0.98
365 366 2.622210 GAAGAGGGGAGGGGGTATAAG 58.378 57.143 0.00 0.00 0.00 1.73
366 367 0.875311 AGAGGGGAGGGGGTATAAGG 59.125 60.000 0.00 0.00 0.00 2.69
367 368 0.571745 GAGGGGAGGGGGTATAAGGT 59.428 60.000 0.00 0.00 0.00 3.50
368 369 0.271005 AGGGGAGGGGGTATAAGGTG 59.729 60.000 0.00 0.00 0.00 4.00
369 370 1.424612 GGGGAGGGGGTATAAGGTGC 61.425 65.000 0.00 0.00 0.00 5.01
370 371 1.424612 GGGAGGGGGTATAAGGTGCC 61.425 65.000 0.00 0.00 0.00 5.01
371 372 0.401541 GGAGGGGGTATAAGGTGCCT 60.402 60.000 0.00 0.00 32.37 4.75
372 373 1.519498 GAGGGGGTATAAGGTGCCTT 58.481 55.000 8.65 8.65 39.83 4.35
373 374 1.850998 GAGGGGGTATAAGGTGCCTTT 59.149 52.381 8.93 0.65 37.47 3.11
678 740 0.392863 AGTGCGCCATTGCTATCACA 60.393 50.000 4.18 0.00 34.48 3.58
706 768 0.327000 CCTCCCCTTCCTCCTGACAT 60.327 60.000 0.00 0.00 0.00 3.06
1044 1111 1.064463 AGCCCATGATTGATGAACGGT 60.064 47.619 0.00 0.00 33.31 4.83
1104 1172 2.897762 GCCGGTGGAGGGTGGTTTA 61.898 63.158 1.90 0.00 0.00 2.01
1160 1228 0.100325 CTGCGTTGTTCTGCACCAAA 59.900 50.000 0.00 0.00 35.90 3.28
1229 1298 2.766263 TGGCACTCATCTCGAAAGGTAT 59.234 45.455 0.00 0.00 0.00 2.73
1407 1482 0.911769 CCTGCTCCTTCCCATGTACA 59.088 55.000 0.00 0.00 0.00 2.90
1433 1510 3.783082 TCATCCCAGTCTCTGACTCTCTA 59.217 47.826 0.00 0.00 41.37 2.43
1799 1881 3.667217 GATGGTGCCCAGCCATGGT 62.667 63.158 14.67 0.00 45.87 3.55
2014 2096 0.253160 TGCCACCCCTATCCTCAAGT 60.253 55.000 0.00 0.00 0.00 3.16
2294 2382 0.674895 GGTTCAGTCAGCGCCTCAAT 60.675 55.000 2.29 0.00 0.00 2.57
3036 3135 7.362662 TCTGTTTCCTGATGAATTTTCTTTCG 58.637 34.615 0.00 0.00 31.67 3.46
3125 3224 7.291566 ACTAGTAGTCTATATTCCAGCTGTGT 58.708 38.462 13.81 0.24 0.00 3.72
3131 3230 6.607600 AGTCTATATTCCAGCTGTGTGACTAA 59.392 38.462 13.81 0.00 30.59 2.24
3165 3264 6.656693 ACTTGAACCGATGAGAATTCTTCAAT 59.343 34.615 9.87 4.28 28.41 2.57
3184 3283 4.593206 TCAATCCTACCTATAGCCACTTGG 59.407 45.833 0.00 0.00 38.53 3.61
3199 3298 4.702131 GCCACTTGGACAAATGTCTATCTT 59.298 41.667 12.87 0.00 44.20 2.40
3418 3522 9.984190 ATATATGCTCATATCTAGTTCTGCATG 57.016 33.333 5.71 0.00 39.71 4.06
3879 3996 2.696187 TCTGGTATACTAATGGCGCACA 59.304 45.455 10.83 5.20 0.00 4.57
3952 4074 2.597995 TGGTGCGCCATTAGTAGGA 58.402 52.632 16.89 0.00 40.46 2.94
3953 4075 0.177141 TGGTGCGCCATTAGTAGGAC 59.823 55.000 16.89 0.00 40.46 3.85
4003 4125 3.012518 GCATCAGCCATAGTTGTGAAGT 58.987 45.455 0.00 0.00 33.58 3.01
4094 4219 1.306482 CCAGAGGGAGAAGCCAGGA 60.306 63.158 0.00 0.00 38.95 3.86
4216 4341 4.119363 GCTGCAGGCAGGGGATCA 62.119 66.667 21.63 0.00 43.77 2.92
4277 4402 2.318578 CAATGAATGCTCGCGTGTTTT 58.681 42.857 5.77 1.46 0.00 2.43
4300 4425 4.513406 TTTTACTTGAGGGTCAGGTGTT 57.487 40.909 2.18 0.00 37.28 3.32
4344 4469 7.720957 TGCATTTTGAGTGTAATATAGGCAGAT 59.279 33.333 0.00 0.00 0.00 2.90
4355 4480 8.797438 TGTAATATAGGCAGATAACAGAGTCAG 58.203 37.037 0.00 0.00 0.00 3.51
4378 4503 3.747852 TCACTATTCCCCTTCCCTTCAT 58.252 45.455 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.392336 GCTGCTCCTACTGCTGCTAT 59.608 55.000 0.00 0.00 46.79 2.97
4 5 0.036577 ACAAGCTGCTCCTACTGCTG 60.037 55.000 1.00 0.00 43.15 4.41
6 7 1.933247 CTACAAGCTGCTCCTACTGC 58.067 55.000 1.00 0.00 34.97 4.40
7 8 1.205655 TGCTACAAGCTGCTCCTACTG 59.794 52.381 1.00 0.00 42.97 2.74
8 9 1.561643 TGCTACAAGCTGCTCCTACT 58.438 50.000 1.00 0.00 42.97 2.57
9 10 2.003301 GTTGCTACAAGCTGCTCCTAC 58.997 52.381 1.00 0.00 42.97 3.18
10 11 1.902508 AGTTGCTACAAGCTGCTCCTA 59.097 47.619 1.00 0.00 42.97 2.94
11 12 0.689623 AGTTGCTACAAGCTGCTCCT 59.310 50.000 1.00 0.00 42.97 3.69
12 13 1.082690 GAGTTGCTACAAGCTGCTCC 58.917 55.000 1.00 0.00 42.97 4.70
13 14 1.800805 TGAGTTGCTACAAGCTGCTC 58.199 50.000 1.00 12.82 42.97 4.26
14 15 2.289882 TGATGAGTTGCTACAAGCTGCT 60.290 45.455 0.00 0.00 42.97 4.24
15 16 2.079158 TGATGAGTTGCTACAAGCTGC 58.921 47.619 0.13 0.00 42.97 5.25
16 17 6.128607 GCTATATGATGAGTTGCTACAAGCTG 60.129 42.308 0.13 0.00 42.97 4.24
17 18 5.931146 GCTATATGATGAGTTGCTACAAGCT 59.069 40.000 0.13 0.00 42.97 3.74
18 19 5.698089 TGCTATATGATGAGTTGCTACAAGC 59.302 40.000 0.13 0.00 42.82 4.01
19 20 6.128607 GCTGCTATATGATGAGTTGCTACAAG 60.129 42.308 0.13 0.00 0.00 3.16
20 21 5.698089 GCTGCTATATGATGAGTTGCTACAA 59.302 40.000 0.13 0.00 0.00 2.41
21 22 5.221501 TGCTGCTATATGATGAGTTGCTACA 60.222 40.000 0.00 0.00 0.00 2.74
22 23 5.233225 TGCTGCTATATGATGAGTTGCTAC 58.767 41.667 0.00 0.00 0.00 3.58
23 24 5.473066 TGCTGCTATATGATGAGTTGCTA 57.527 39.130 0.00 0.00 0.00 3.49
24 25 4.316645 CTGCTGCTATATGATGAGTTGCT 58.683 43.478 0.00 0.00 0.00 3.91
25 26 3.120269 GCTGCTGCTATATGATGAGTTGC 60.120 47.826 8.53 0.00 36.03 4.17
26 27 4.062991 TGCTGCTGCTATATGATGAGTTG 58.937 43.478 17.00 0.00 40.48 3.16
27 28 4.316645 CTGCTGCTGCTATATGATGAGTT 58.683 43.478 17.00 0.00 40.48 3.01
28 29 3.306849 CCTGCTGCTGCTATATGATGAGT 60.307 47.826 17.00 0.00 40.48 3.41
29 30 3.056035 TCCTGCTGCTGCTATATGATGAG 60.056 47.826 17.00 2.25 40.48 2.90
30 31 2.901839 TCCTGCTGCTGCTATATGATGA 59.098 45.455 17.00 0.00 40.48 2.92
31 32 3.263261 CTCCTGCTGCTGCTATATGATG 58.737 50.000 17.00 0.00 40.48 3.07
32 33 2.354906 GCTCCTGCTGCTGCTATATGAT 60.355 50.000 17.00 0.00 40.48 2.45
33 34 1.001746 GCTCCTGCTGCTGCTATATGA 59.998 52.381 17.00 5.28 40.48 2.15
34 35 1.270678 TGCTCCTGCTGCTGCTATATG 60.271 52.381 17.00 4.78 40.48 1.78
35 36 1.002201 CTGCTCCTGCTGCTGCTATAT 59.998 52.381 17.00 0.00 40.48 0.86
36 37 0.391966 CTGCTCCTGCTGCTGCTATA 59.608 55.000 17.00 1.07 40.48 1.31
37 38 1.146485 CTGCTCCTGCTGCTGCTAT 59.854 57.895 17.00 0.00 40.48 2.97
38 39 2.582978 CTGCTCCTGCTGCTGCTA 59.417 61.111 17.00 2.62 40.48 3.49
44 45 1.367599 GCTACAAGCTGCTCCTGCTG 61.368 60.000 1.00 0.00 38.59 4.41
45 46 1.078567 GCTACAAGCTGCTCCTGCT 60.079 57.895 1.00 0.00 40.24 4.24
46 47 0.957395 TTGCTACAAGCTGCTCCTGC 60.957 55.000 1.00 6.29 42.97 4.85
47 48 0.801251 GTTGCTACAAGCTGCTCCTG 59.199 55.000 1.00 0.37 42.97 3.86
48 49 0.689623 AGTTGCTACAAGCTGCTCCT 59.310 50.000 1.00 0.00 42.97 3.69
49 50 1.082690 GAGTTGCTACAAGCTGCTCC 58.917 55.000 1.00 0.00 42.97 4.70
50 51 1.800805 TGAGTTGCTACAAGCTGCTC 58.199 50.000 1.00 12.82 42.97 4.26
51 52 2.289882 TGATGAGTTGCTACAAGCTGCT 60.290 45.455 0.00 0.00 42.97 4.24
52 53 2.079158 TGATGAGTTGCTACAAGCTGC 58.921 47.619 0.13 0.00 42.97 5.25
53 54 6.128607 GCTATATGATGAGTTGCTACAAGCTG 60.129 42.308 0.13 0.00 42.97 4.24
54 55 5.931146 GCTATATGATGAGTTGCTACAAGCT 59.069 40.000 0.13 0.00 42.97 3.74
55 56 5.698089 TGCTATATGATGAGTTGCTACAAGC 59.302 40.000 0.13 0.00 42.82 4.01
56 57 6.128607 GCTGCTATATGATGAGTTGCTACAAG 60.129 42.308 0.13 0.00 0.00 3.16
57 58 5.698089 GCTGCTATATGATGAGTTGCTACAA 59.302 40.000 0.13 0.00 0.00 2.41
58 59 5.221501 TGCTGCTATATGATGAGTTGCTACA 60.222 40.000 0.00 0.00 0.00 2.74
59 60 5.233225 TGCTGCTATATGATGAGTTGCTAC 58.767 41.667 0.00 0.00 0.00 3.58
60 61 5.473066 TGCTGCTATATGATGAGTTGCTA 57.527 39.130 0.00 0.00 0.00 3.49
61 62 4.316645 CTGCTGCTATATGATGAGTTGCT 58.683 43.478 0.00 0.00 0.00 3.91
62 63 3.120269 GCTGCTGCTATATGATGAGTTGC 60.120 47.826 8.53 0.00 36.03 4.17
63 64 4.062991 TGCTGCTGCTATATGATGAGTTG 58.937 43.478 17.00 0.00 40.48 3.16
64 65 4.202336 ACTGCTGCTGCTATATGATGAGTT 60.202 41.667 17.00 0.00 40.48 3.01
65 66 3.324268 ACTGCTGCTGCTATATGATGAGT 59.676 43.478 17.00 5.46 40.48 3.41
66 67 3.927854 ACTGCTGCTGCTATATGATGAG 58.072 45.455 17.00 4.83 40.48 2.90
67 68 4.620097 GCTACTGCTGCTGCTATATGATGA 60.620 45.833 17.00 0.00 40.48 2.92
68 69 3.617706 GCTACTGCTGCTGCTATATGATG 59.382 47.826 17.00 0.93 40.48 3.07
69 70 3.859443 GCTACTGCTGCTGCTATATGAT 58.141 45.455 17.00 0.00 40.48 2.45
70 71 3.309961 GCTACTGCTGCTGCTATATGA 57.690 47.619 17.00 0.00 40.48 2.15
83 84 7.670009 ATGATGAATTTCTATGAGCTACTGC 57.330 36.000 0.00 0.00 40.05 4.40
88 89 9.602568 CTGCTATATGATGAATTTCTATGAGCT 57.397 33.333 0.00 0.00 0.00 4.09
89 90 9.381033 ACTGCTATATGATGAATTTCTATGAGC 57.619 33.333 0.00 0.00 0.00 4.26
94 95 9.866798 CTGCTACTGCTATATGATGAATTTCTA 57.133 33.333 0.00 0.00 40.48 2.10
95 96 7.333921 GCTGCTACTGCTATATGATGAATTTCT 59.666 37.037 0.00 0.00 40.48 2.52
96 97 7.118825 TGCTGCTACTGCTATATGATGAATTTC 59.881 37.037 0.00 0.00 40.48 2.17
97 98 6.938596 TGCTGCTACTGCTATATGATGAATTT 59.061 34.615 0.00 0.00 40.48 1.82
98 99 6.470278 TGCTGCTACTGCTATATGATGAATT 58.530 36.000 0.00 0.00 40.48 2.17
99 100 6.046290 TGCTGCTACTGCTATATGATGAAT 57.954 37.500 0.00 0.00 40.48 2.57
100 101 5.473066 TGCTGCTACTGCTATATGATGAA 57.527 39.130 0.00 0.00 40.48 2.57
101 102 4.620097 GCTGCTGCTACTGCTATATGATGA 60.620 45.833 8.53 0.00 40.48 2.92
102 103 3.617706 GCTGCTGCTACTGCTATATGATG 59.382 47.826 8.53 0.00 40.48 3.07
103 104 3.859443 GCTGCTGCTACTGCTATATGAT 58.141 45.455 8.53 0.00 40.48 2.45
104 105 3.309961 GCTGCTGCTACTGCTATATGA 57.690 47.619 8.53 0.00 40.48 2.15
117 118 0.656785 GAGTTGCTATGAGCTGCTGC 59.343 55.000 7.01 7.62 42.97 5.25
118 119 2.019948 TGAGTTGCTATGAGCTGCTG 57.980 50.000 7.01 0.00 42.97 4.41
119 120 2.169978 TGATGAGTTGCTATGAGCTGCT 59.830 45.455 0.00 0.00 42.97 4.24
120 121 2.558378 TGATGAGTTGCTATGAGCTGC 58.442 47.619 0.00 0.00 42.97 5.25
121 122 6.620949 GCAATATGATGAGTTGCTATGAGCTG 60.621 42.308 0.00 0.00 43.56 4.24
122 123 5.411977 GCAATATGATGAGTTGCTATGAGCT 59.588 40.000 0.00 0.00 43.56 4.09
123 124 5.180680 TGCAATATGATGAGTTGCTATGAGC 59.819 40.000 10.20 0.00 46.22 4.26
124 125 6.620949 GCTGCAATATGATGAGTTGCTATGAG 60.621 42.308 10.20 1.61 46.22 2.90
125 126 5.180680 GCTGCAATATGATGAGTTGCTATGA 59.819 40.000 10.20 0.00 46.22 2.15
126 127 5.048991 TGCTGCAATATGATGAGTTGCTATG 60.049 40.000 0.00 3.15 46.22 2.23
127 128 5.067954 TGCTGCAATATGATGAGTTGCTAT 58.932 37.500 0.00 0.00 46.22 2.97
128 129 4.453751 TGCTGCAATATGATGAGTTGCTA 58.546 39.130 0.00 0.00 46.22 3.49
129 130 3.284617 TGCTGCAATATGATGAGTTGCT 58.715 40.909 0.00 0.00 46.22 3.91
130 131 3.629058 CTGCTGCAATATGATGAGTTGC 58.371 45.455 3.02 2.61 46.24 4.17
131 132 3.629058 GCTGCTGCAATATGATGAGTTG 58.371 45.455 11.11 0.00 39.41 3.16
132 133 3.984508 GCTGCTGCAATATGATGAGTT 57.015 42.857 11.11 0.00 39.41 3.01
148 149 1.674441 TGAATTGCTATGAGCTGCTGC 59.326 47.619 7.01 7.62 42.97 5.25
149 150 3.564225 TGATGAATTGCTATGAGCTGCTG 59.436 43.478 7.01 0.00 42.97 4.41
150 151 3.816994 TGATGAATTGCTATGAGCTGCT 58.183 40.909 0.00 0.00 42.97 4.24
151 152 4.768130 ATGATGAATTGCTATGAGCTGC 57.232 40.909 0.00 0.00 42.97 5.25
152 153 7.280205 TGCTATATGATGAATTGCTATGAGCTG 59.720 37.037 0.00 0.00 42.97 4.24
153 154 7.336396 TGCTATATGATGAATTGCTATGAGCT 58.664 34.615 0.00 0.00 42.97 4.09
154 155 7.549615 TGCTATATGATGAATTGCTATGAGC 57.450 36.000 0.00 0.00 42.82 4.26
155 156 7.280205 TGCTGCTATATGATGAATTGCTATGAG 59.720 37.037 0.00 0.00 0.00 2.90
156 157 7.107542 TGCTGCTATATGATGAATTGCTATGA 58.892 34.615 0.00 0.00 0.00 2.15
157 158 7.316544 TGCTGCTATATGATGAATTGCTATG 57.683 36.000 0.00 0.00 0.00 2.23
158 159 6.038382 GCTGCTGCTATATGATGAATTGCTAT 59.962 38.462 8.53 0.00 36.03 2.97
159 160 5.353400 GCTGCTGCTATATGATGAATTGCTA 59.647 40.000 8.53 0.00 36.03 3.49
160 161 4.156190 GCTGCTGCTATATGATGAATTGCT 59.844 41.667 8.53 0.00 36.03 3.91
161 162 4.082949 TGCTGCTGCTATATGATGAATTGC 60.083 41.667 17.00 0.00 40.48 3.56
162 163 5.392057 CCTGCTGCTGCTATATGATGAATTG 60.392 44.000 17.00 0.00 40.48 2.32
163 164 4.700692 CCTGCTGCTGCTATATGATGAATT 59.299 41.667 17.00 0.00 40.48 2.17
164 165 4.019591 TCCTGCTGCTGCTATATGATGAAT 60.020 41.667 17.00 0.00 40.48 2.57
165 166 3.325716 TCCTGCTGCTGCTATATGATGAA 59.674 43.478 17.00 0.00 40.48 2.57
166 167 2.901839 TCCTGCTGCTGCTATATGATGA 59.098 45.455 17.00 0.00 40.48 2.92
167 168 3.263261 CTCCTGCTGCTGCTATATGATG 58.737 50.000 17.00 0.00 40.48 3.07
168 169 2.354906 GCTCCTGCTGCTGCTATATGAT 60.355 50.000 17.00 0.00 40.48 2.45
169 170 1.001746 GCTCCTGCTGCTGCTATATGA 59.998 52.381 17.00 5.28 40.48 2.15
170 171 1.270678 TGCTCCTGCTGCTGCTATATG 60.271 52.381 17.00 4.78 40.48 1.78
171 172 1.002201 CTGCTCCTGCTGCTGCTATAT 59.998 52.381 17.00 0.00 40.48 0.86
172 173 0.391966 CTGCTCCTGCTGCTGCTATA 59.608 55.000 17.00 1.07 40.48 1.31
173 174 1.146485 CTGCTCCTGCTGCTGCTAT 59.854 57.895 17.00 0.00 40.48 2.97
174 175 2.582978 CTGCTCCTGCTGCTGCTA 59.417 61.111 17.00 2.62 40.48 3.49
180 181 0.881159 GCTATGAGCTGCTCCTGCTG 60.881 60.000 25.61 12.62 38.70 4.41
181 182 1.335882 TGCTATGAGCTGCTCCTGCT 61.336 55.000 25.61 10.99 42.97 4.24
182 183 0.463295 TTGCTATGAGCTGCTCCTGC 60.463 55.000 25.61 23.84 42.97 4.85
183 184 1.874231 CATTGCTATGAGCTGCTCCTG 59.126 52.381 25.61 16.14 42.97 3.86
184 185 1.814634 GCATTGCTATGAGCTGCTCCT 60.815 52.381 25.61 18.76 42.97 3.69
185 186 0.592148 GCATTGCTATGAGCTGCTCC 59.408 55.000 25.61 11.47 42.97 4.70
186 187 1.306148 TGCATTGCTATGAGCTGCTC 58.694 50.000 22.38 22.38 41.34 4.26
187 188 1.880675 GATGCATTGCTATGAGCTGCT 59.119 47.619 12.54 0.00 41.34 4.24
188 189 1.607148 TGATGCATTGCTATGAGCTGC 59.393 47.619 12.54 5.91 42.97 5.25
189 190 5.819825 ATATGATGCATTGCTATGAGCTG 57.180 39.130 12.54 0.00 42.97 4.24
190 191 5.527951 GCTATATGATGCATTGCTATGAGCT 59.472 40.000 12.54 0.00 42.97 4.09
191 192 5.296035 TGCTATATGATGCATTGCTATGAGC 59.704 40.000 12.54 9.32 36.61 4.26
192 193 6.511929 GCTGCTATATGATGCATTGCTATGAG 60.512 42.308 12.54 0.00 38.59 2.90
193 194 5.296035 GCTGCTATATGATGCATTGCTATGA 59.704 40.000 12.54 0.00 38.59 2.15
194 195 5.065988 TGCTGCTATATGATGCATTGCTATG 59.934 40.000 10.49 3.56 38.59 2.23
195 196 5.190677 TGCTGCTATATGATGCATTGCTAT 58.809 37.500 10.49 1.86 38.59 2.97
196 197 4.581868 TGCTGCTATATGATGCATTGCTA 58.418 39.130 10.49 0.00 38.59 3.49
197 198 3.418047 TGCTGCTATATGATGCATTGCT 58.582 40.909 10.49 0.00 38.59 3.91
198 199 3.842732 TGCTGCTATATGATGCATTGC 57.157 42.857 0.00 0.46 38.59 3.56
199 200 5.048991 TCTGTTGCTGCTATATGATGCATTG 60.049 40.000 0.00 0.00 38.59 2.82
200 201 5.067954 TCTGTTGCTGCTATATGATGCATT 58.932 37.500 0.00 0.00 38.59 3.56
201 202 4.648651 TCTGTTGCTGCTATATGATGCAT 58.351 39.130 0.00 0.00 38.59 3.96
202 203 4.075963 TCTGTTGCTGCTATATGATGCA 57.924 40.909 0.00 0.00 37.63 3.96
203 204 4.613167 GCTTCTGTTGCTGCTATATGATGC 60.613 45.833 0.00 4.16 0.00 3.91
204 205 4.514066 TGCTTCTGTTGCTGCTATATGATG 59.486 41.667 0.00 0.00 0.00 3.07
205 206 4.711399 TGCTTCTGTTGCTGCTATATGAT 58.289 39.130 0.00 0.00 0.00 2.45
206 207 4.141233 TGCTTCTGTTGCTGCTATATGA 57.859 40.909 0.00 0.00 0.00 2.15
207 208 4.334759 AGTTGCTTCTGTTGCTGCTATATG 59.665 41.667 0.00 0.00 0.00 1.78
208 209 4.521146 AGTTGCTTCTGTTGCTGCTATAT 58.479 39.130 0.00 0.00 0.00 0.86
209 210 3.935203 GAGTTGCTTCTGTTGCTGCTATA 59.065 43.478 0.00 0.00 0.00 1.31
210 211 2.746362 GAGTTGCTTCTGTTGCTGCTAT 59.254 45.455 0.00 0.00 0.00 2.97
211 212 2.146342 GAGTTGCTTCTGTTGCTGCTA 58.854 47.619 0.00 0.00 0.00 3.49
212 213 0.950116 GAGTTGCTTCTGTTGCTGCT 59.050 50.000 0.00 0.00 0.00 4.24
213 214 0.664761 TGAGTTGCTTCTGTTGCTGC 59.335 50.000 0.00 0.00 0.00 5.25
214 215 3.999001 TCTATGAGTTGCTTCTGTTGCTG 59.001 43.478 0.00 0.00 0.00 4.41
215 216 4.277515 TCTATGAGTTGCTTCTGTTGCT 57.722 40.909 0.00 0.00 0.00 3.91
216 217 5.362556 TTTCTATGAGTTGCTTCTGTTGC 57.637 39.130 0.00 0.00 0.00 4.17
217 218 7.587629 TGAATTTCTATGAGTTGCTTCTGTTG 58.412 34.615 0.00 0.00 0.00 3.33
218 219 7.750229 TGAATTTCTATGAGTTGCTTCTGTT 57.250 32.000 0.00 0.00 0.00 3.16
219 220 7.201591 CGATGAATTTCTATGAGTTGCTTCTGT 60.202 37.037 0.00 0.00 0.00 3.41
220 221 7.124471 CGATGAATTTCTATGAGTTGCTTCTG 58.876 38.462 0.00 0.00 0.00 3.02
221 222 6.820656 ACGATGAATTTCTATGAGTTGCTTCT 59.179 34.615 0.00 0.00 0.00 2.85
222 223 7.009568 ACGATGAATTTCTATGAGTTGCTTC 57.990 36.000 0.00 0.00 0.00 3.86
223 224 6.992063 ACGATGAATTTCTATGAGTTGCTT 57.008 33.333 0.00 0.00 0.00 3.91
224 225 9.416794 CTATACGATGAATTTCTATGAGTTGCT 57.583 33.333 0.00 0.00 0.00 3.91
225 226 9.197694 ACTATACGATGAATTTCTATGAGTTGC 57.802 33.333 0.00 0.00 0.00 4.17
227 228 9.698309 CCACTATACGATGAATTTCTATGAGTT 57.302 33.333 0.00 0.00 0.00 3.01
228 229 9.078990 TCCACTATACGATGAATTTCTATGAGT 57.921 33.333 0.00 0.00 0.00 3.41
231 232 9.860898 TGATCCACTATACGATGAATTTCTATG 57.139 33.333 0.00 0.00 0.00 2.23
233 234 9.297037 TCTGATCCACTATACGATGAATTTCTA 57.703 33.333 0.00 0.00 0.00 2.10
234 235 8.183104 TCTGATCCACTATACGATGAATTTCT 57.817 34.615 0.00 0.00 0.00 2.52
235 236 8.818141 TTCTGATCCACTATACGATGAATTTC 57.182 34.615 0.00 0.00 0.00 2.17
236 237 9.212641 CATTCTGATCCACTATACGATGAATTT 57.787 33.333 0.00 0.00 0.00 1.82
237 238 8.588472 TCATTCTGATCCACTATACGATGAATT 58.412 33.333 0.00 0.00 0.00 2.17
238 239 8.127150 TCATTCTGATCCACTATACGATGAAT 57.873 34.615 0.00 0.00 0.00 2.57
239 240 7.524717 TCATTCTGATCCACTATACGATGAA 57.475 36.000 0.00 0.00 0.00 2.57
240 241 7.524717 TTCATTCTGATCCACTATACGATGA 57.475 36.000 0.00 0.00 0.00 2.92
241 242 8.593492 TTTTCATTCTGATCCACTATACGATG 57.407 34.615 0.00 0.00 0.00 3.84
242 243 9.784531 AATTTTCATTCTGATCCACTATACGAT 57.215 29.630 0.00 0.00 0.00 3.73
243 244 9.613428 AAATTTTCATTCTGATCCACTATACGA 57.387 29.630 0.00 0.00 0.00 3.43
244 245 9.655769 CAAATTTTCATTCTGATCCACTATACG 57.344 33.333 0.00 0.00 0.00 3.06
245 246 9.956720 CCAAATTTTCATTCTGATCCACTATAC 57.043 33.333 0.00 0.00 0.00 1.47
246 247 8.632679 GCCAAATTTTCATTCTGATCCACTATA 58.367 33.333 0.00 0.00 0.00 1.31
247 248 7.124599 TGCCAAATTTTCATTCTGATCCACTAT 59.875 33.333 0.00 0.00 0.00 2.12
248 249 6.436847 TGCCAAATTTTCATTCTGATCCACTA 59.563 34.615 0.00 0.00 0.00 2.74
249 250 5.246656 TGCCAAATTTTCATTCTGATCCACT 59.753 36.000 0.00 0.00 0.00 4.00
250 251 5.481105 TGCCAAATTTTCATTCTGATCCAC 58.519 37.500 0.00 0.00 0.00 4.02
251 252 5.741962 TGCCAAATTTTCATTCTGATCCA 57.258 34.783 0.00 0.00 0.00 3.41
252 253 7.437793 TTTTGCCAAATTTTCATTCTGATCC 57.562 32.000 0.00 0.00 0.00 3.36
285 286 3.198635 TCATCCAACAAGGTGAGGATCTC 59.801 47.826 0.00 0.00 35.06 2.75
286 287 3.184628 TCATCCAACAAGGTGAGGATCT 58.815 45.455 0.00 0.00 35.06 2.75
287 288 3.539604 CTCATCCAACAAGGTGAGGATC 58.460 50.000 0.00 0.00 39.67 3.36
288 289 2.356535 GCTCATCCAACAAGGTGAGGAT 60.357 50.000 4.13 0.00 41.70 3.24
289 290 1.003580 GCTCATCCAACAAGGTGAGGA 59.996 52.381 4.13 0.00 41.70 3.71
290 291 1.004044 AGCTCATCCAACAAGGTGAGG 59.996 52.381 4.13 0.00 41.70 3.86
291 292 2.289882 TGAGCTCATCCAACAAGGTGAG 60.290 50.000 13.74 0.00 43.02 3.51
292 293 1.699083 TGAGCTCATCCAACAAGGTGA 59.301 47.619 13.74 0.00 39.02 4.02
293 294 2.189594 TGAGCTCATCCAACAAGGTG 57.810 50.000 13.74 0.00 39.02 4.00
294 295 2.996631 GATGAGCTCATCCAACAAGGT 58.003 47.619 36.62 11.84 45.24 3.50
304 305 2.026542 TGCTGTTGAAGGATGAGCTCAT 60.027 45.455 29.09 29.09 39.70 2.90
305 306 1.348696 TGCTGTTGAAGGATGAGCTCA 59.651 47.619 20.79 20.79 0.00 4.26
306 307 1.736681 GTGCTGTTGAAGGATGAGCTC 59.263 52.381 6.82 6.82 0.00 4.09
307 308 1.612726 GGTGCTGTTGAAGGATGAGCT 60.613 52.381 0.00 0.00 0.00 4.09
308 309 0.807496 GGTGCTGTTGAAGGATGAGC 59.193 55.000 0.00 0.00 0.00 4.26
309 310 2.289882 TGAGGTGCTGTTGAAGGATGAG 60.290 50.000 0.00 0.00 0.00 2.90
310 311 1.699083 TGAGGTGCTGTTGAAGGATGA 59.301 47.619 0.00 0.00 0.00 2.92
311 312 2.189594 TGAGGTGCTGTTGAAGGATG 57.810 50.000 0.00 0.00 0.00 3.51
312 313 2.553904 CCTTGAGGTGCTGTTGAAGGAT 60.554 50.000 0.00 0.00 33.17 3.24
313 314 1.202806 CCTTGAGGTGCTGTTGAAGGA 60.203 52.381 0.00 0.00 33.17 3.36
314 315 1.242076 CCTTGAGGTGCTGTTGAAGG 58.758 55.000 0.00 0.00 0.00 3.46
315 316 0.595095 GCCTTGAGGTGCTGTTGAAG 59.405 55.000 0.00 0.00 37.57 3.02
316 317 0.823356 GGCCTTGAGGTGCTGTTGAA 60.823 55.000 0.00 0.00 37.57 2.69
317 318 1.228245 GGCCTTGAGGTGCTGTTGA 60.228 57.895 0.00 0.00 37.57 3.18
318 319 0.896940 ATGGCCTTGAGGTGCTGTTG 60.897 55.000 3.32 0.00 37.57 3.33
319 320 0.896940 CATGGCCTTGAGGTGCTGTT 60.897 55.000 13.33 0.00 37.57 3.16
320 321 1.303888 CATGGCCTTGAGGTGCTGT 60.304 57.895 13.33 0.00 37.57 4.40
321 322 2.050350 CCATGGCCTTGAGGTGCTG 61.050 63.158 19.85 0.00 37.57 4.41
322 323 2.357836 CCATGGCCTTGAGGTGCT 59.642 61.111 19.85 0.00 37.57 4.40
323 324 3.455469 GCCATGGCCTTGAGGTGC 61.455 66.667 27.24 10.59 37.57 5.01
335 336 2.599597 CCCTCTTCCCAGGCCATG 59.400 66.667 5.01 0.00 31.23 3.66
336 337 2.697644 CCCCTCTTCCCAGGCCAT 60.698 66.667 5.01 0.00 31.23 4.40
337 338 3.950861 CTCCCCTCTTCCCAGGCCA 62.951 68.421 5.01 0.00 31.23 5.36
338 339 3.093172 CTCCCCTCTTCCCAGGCC 61.093 72.222 0.00 0.00 31.23 5.19
339 340 3.093172 CCTCCCCTCTTCCCAGGC 61.093 72.222 0.00 0.00 31.23 4.85
340 341 2.367512 CCCTCCCCTCTTCCCAGG 60.368 72.222 0.00 0.00 0.00 4.45
341 342 2.367512 CCCCTCCCCTCTTCCCAG 60.368 72.222 0.00 0.00 0.00 4.45
342 343 4.038804 CCCCCTCCCCTCTTCCCA 62.039 72.222 0.00 0.00 0.00 4.37
343 344 1.986695 ATACCCCCTCCCCTCTTCCC 61.987 65.000 0.00 0.00 0.00 3.97
344 345 0.872449 TATACCCCCTCCCCTCTTCC 59.128 60.000 0.00 0.00 0.00 3.46
345 346 2.622210 CTTATACCCCCTCCCCTCTTC 58.378 57.143 0.00 0.00 0.00 2.87
346 347 1.225958 CCTTATACCCCCTCCCCTCTT 59.774 57.143 0.00 0.00 0.00 2.85
347 348 0.875311 CCTTATACCCCCTCCCCTCT 59.125 60.000 0.00 0.00 0.00 3.69
348 349 0.571745 ACCTTATACCCCCTCCCCTC 59.428 60.000 0.00 0.00 0.00 4.30
349 350 0.271005 CACCTTATACCCCCTCCCCT 59.729 60.000 0.00 0.00 0.00 4.79
350 351 1.424612 GCACCTTATACCCCCTCCCC 61.425 65.000 0.00 0.00 0.00 4.81
351 352 1.424612 GGCACCTTATACCCCCTCCC 61.425 65.000 0.00 0.00 0.00 4.30
352 353 0.401541 AGGCACCTTATACCCCCTCC 60.402 60.000 0.00 0.00 0.00 4.30
353 354 1.519498 AAGGCACCTTATACCCCCTC 58.481 55.000 0.00 0.00 34.05 4.30
354 355 1.995868 AAAGGCACCTTATACCCCCT 58.004 50.000 1.53 0.00 34.84 4.79
355 356 2.024751 TGAAAAGGCACCTTATACCCCC 60.025 50.000 1.53 0.00 34.84 5.40
356 357 3.021695 GTGAAAAGGCACCTTATACCCC 58.978 50.000 1.53 0.00 34.84 4.95
357 358 3.964411 AGTGAAAAGGCACCTTATACCC 58.036 45.455 1.53 0.00 39.59 3.69
358 359 5.742063 AGTAGTGAAAAGGCACCTTATACC 58.258 41.667 1.53 0.00 39.59 2.73
359 360 6.985059 CCTAGTAGTGAAAAGGCACCTTATAC 59.015 42.308 1.53 2.86 39.59 1.47
360 361 6.899075 TCCTAGTAGTGAAAAGGCACCTTATA 59.101 38.462 1.53 0.00 39.59 0.98
361 362 5.724854 TCCTAGTAGTGAAAAGGCACCTTAT 59.275 40.000 1.53 0.00 39.59 1.73
362 363 5.088730 TCCTAGTAGTGAAAAGGCACCTTA 58.911 41.667 1.53 0.00 39.59 2.69
363 364 3.908103 TCCTAGTAGTGAAAAGGCACCTT 59.092 43.478 0.00 0.00 39.59 3.50
364 365 3.517612 TCCTAGTAGTGAAAAGGCACCT 58.482 45.455 0.00 0.00 39.59 4.00
365 366 3.975168 TCCTAGTAGTGAAAAGGCACC 57.025 47.619 0.00 0.00 39.59 5.01
366 367 6.242508 CTTTTCCTAGTAGTGAAAAGGCAC 57.757 41.667 26.62 0.00 46.99 5.01
371 372 5.578157 AGCCCTTTTCCTAGTAGTGAAAA 57.422 39.130 17.97 17.97 37.94 2.29
372 373 6.886178 ATAGCCCTTTTCCTAGTAGTGAAA 57.114 37.500 8.78 8.78 0.00 2.69
373 374 7.359849 TCTATAGCCCTTTTCCTAGTAGTGAA 58.640 38.462 0.00 0.00 0.00 3.18
457 458 1.632920 TGGACACTAATGATGGGTGCA 59.367 47.619 0.00 0.00 34.70 4.57
574 587 4.998672 AGTTAAAACTAGTAATGGCGCACA 59.001 37.500 10.83 5.20 37.52 4.57
608 621 0.175760 TGGCGCATCTCTTACTGGTC 59.824 55.000 10.83 0.00 0.00 4.02
678 740 0.029577 GGAAGGGGAGGGGAGAGAAT 60.030 60.000 0.00 0.00 0.00 2.40
706 768 2.453054 GAGGGAGGTGGGTGGGTA 59.547 66.667 0.00 0.00 0.00 3.69
995 1062 0.681564 ACGACGAGGATCTGGAAGCT 60.682 55.000 0.00 0.00 0.00 3.74
1104 1172 0.820891 GGCGCATGGATGTGGAGAAT 60.821 55.000 10.83 0.00 38.66 2.40
1181 1250 4.390556 AGCAGGAGGAGGACGGCT 62.391 66.667 0.00 0.00 0.00 5.52
1229 1298 0.326595 TTAATGCGGGAGAGGCACAA 59.673 50.000 0.00 0.00 44.23 3.33
1381 1450 1.216710 GGAAGGAGCAGGAGACACG 59.783 63.158 0.00 0.00 0.00 4.49
1383 1452 0.252881 ATGGGAAGGAGCAGGAGACA 60.253 55.000 0.00 0.00 0.00 3.41
1407 1482 3.448934 AGTCAGAGACTGGGATGAACAT 58.551 45.455 0.00 0.00 41.76 2.71
1433 1510 3.314635 CCGCTACGTAGTTAAGTCTGGAT 59.685 47.826 22.98 0.00 37.78 3.41
1561 1638 6.276847 AGCTAGTGATTTCAATTCTCTACCG 58.723 40.000 0.00 0.00 0.00 4.02
1799 1881 2.927856 TTGGGGCTTCCTCGCTCA 60.928 61.111 0.00 0.00 36.20 4.26
2041 2123 8.616076 GGAAGAATAGAGTAATTGTTGTCCATG 58.384 37.037 0.00 0.00 0.00 3.66
2294 2382 2.433436 TCAGAAGTAGTGCAGACGCTA 58.567 47.619 0.00 0.00 37.86 4.26
2451 2543 6.290294 ACGGAAAATTCAGTTAGGCTACTA 57.710 37.500 0.00 0.00 31.55 1.82
2630 2725 7.014711 GTCAGATTCTATGAGGTTCAGGACATA 59.985 40.741 0.00 0.00 0.00 2.29
2926 3025 0.320771 GTTGTGGACGGACTGCTCAT 60.321 55.000 0.00 0.00 0.00 2.90
3036 3135 3.058450 CAGATCCGATCACATTGAGCTC 58.942 50.000 6.82 6.82 29.10 4.09
3125 3224 4.502604 GGTTCAAGTGGCTACAGTTAGTCA 60.503 45.833 2.02 0.00 38.17 3.41
3131 3230 1.045407 TCGGTTCAAGTGGCTACAGT 58.955 50.000 2.02 0.00 0.00 3.55
3165 3264 3.052414 TGTCCAAGTGGCTATAGGTAGGA 60.052 47.826 1.04 0.00 34.44 2.94
3184 3283 9.920133 TGAGCATATCTAAGATAGACATTTGTC 57.080 33.333 2.41 2.41 45.08 3.18
3310 3410 0.466124 GCTAGGAGCCCACTTTCGAT 59.534 55.000 0.00 0.00 34.48 3.59
3952 4074 4.062991 CGGCAAACACTACTAGGAAAAGT 58.937 43.478 0.00 0.00 0.00 2.66
3953 4075 3.120304 GCGGCAAACACTACTAGGAAAAG 60.120 47.826 0.00 0.00 0.00 2.27
4000 4122 1.913762 ACTACTCCGGCAGGCACTT 60.914 57.895 0.00 0.00 34.60 3.16
4003 4125 4.082523 GCACTACTCCGGCAGGCA 62.083 66.667 0.00 0.00 37.47 4.75
4094 4219 0.702316 AACGGGTAGGGGCAAATCTT 59.298 50.000 0.00 0.00 0.00 2.40
4216 4341 1.728701 TCTCCCCTTTCCCTCTACCTT 59.271 52.381 0.00 0.00 0.00 3.50
4300 4425 2.863346 AACTGCTGACGCCCGTGTA 61.863 57.895 0.00 0.00 34.43 2.90
4344 4469 5.187186 GGGGAATAGTGAACTGACTCTGTTA 59.813 44.000 1.57 0.00 0.00 2.41
4355 4480 3.265995 TGAAGGGAAGGGGAATAGTGAAC 59.734 47.826 0.00 0.00 0.00 3.18
4384 4509 1.000060 TGTTTCGGGTAGAACCTCACG 60.000 52.381 0.00 0.00 38.83 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.