Multiple sequence alignment - TraesCS6A01G231400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G231400 chr6A 100.000 8809 0 0 1 8809 436858857 436867665 0.000000e+00 16268.0
1 TraesCS6A01G231400 chr6A 96.154 52 2 0 8758 8809 169489115 169489064 1.580000e-12 86.1
2 TraesCS6A01G231400 chr6D 96.301 4920 93 19 3864 8759 288557046 288552192 0.000000e+00 7995.0
3 TraesCS6A01G231400 chr6D 96.091 3377 112 11 507 3880 288560437 288557078 0.000000e+00 5487.0
4 TraesCS6A01G231400 chr6D 95.446 505 20 3 8 512 262979126 262979627 0.000000e+00 802.0
5 TraesCS6A01G231400 chr6D 80.556 180 24 8 1207 1386 288559910 288559742 2.580000e-25 128.0
6 TraesCS6A01G231400 chr6B 94.634 4398 124 39 4400 8759 449042093 449037770 0.000000e+00 6711.0
7 TraesCS6A01G231400 chr6B 95.675 3376 125 13 510 3880 449045972 449042613 0.000000e+00 5406.0
8 TraesCS6A01G231400 chr6B 94.416 591 21 2 3864 4454 449042581 449042003 0.000000e+00 898.0
9 TraesCS6A01G231400 chr2D 95.644 505 20 2 8 512 476394152 476394654 0.000000e+00 809.0
10 TraesCS6A01G231400 chr2D 95.266 507 23 1 1 507 476427345 476427850 0.000000e+00 802.0
11 TraesCS6A01G231400 chr2D 95.446 505 18 5 8 512 634508426 634508925 0.000000e+00 800.0
12 TraesCS6A01G231400 chr2D 94.737 513 23 4 1 512 477854349 477853840 0.000000e+00 795.0
13 TraesCS6A01G231400 chr5D 95.644 505 18 3 8 512 97359084 97359584 0.000000e+00 808.0
14 TraesCS6A01G231400 chr5D 94.231 52 3 0 8758 8809 72874112 72874061 7.330000e-11 80.5
15 TraesCS6A01G231400 chr4D 95.800 500 20 1 8 507 484366690 484367188 0.000000e+00 806.0
16 TraesCS6A01G231400 chr7D 95.455 506 19 4 8 511 585082781 585082278 0.000000e+00 804.0
17 TraesCS6A01G231400 chr3A 95.088 509 24 1 1 508 566049442 566048934 0.000000e+00 800.0
18 TraesCS6A01G231400 chr3A 91.379 58 5 0 8752 8809 645147760 645147817 7.330000e-11 80.5
19 TraesCS6A01G231400 chr3D 83.784 111 15 2 522 630 161718714 161718605 1.560000e-17 102.0
20 TraesCS6A01G231400 chr4A 96.154 52 2 0 8758 8809 99034898 99034847 1.580000e-12 86.1
21 TraesCS6A01G231400 chr4A 96.154 52 2 0 8758 8809 586668024 586667973 1.580000e-12 86.1
22 TraesCS6A01G231400 chr4A 94.231 52 3 0 8758 8809 528606224 528606275 7.330000e-11 80.5
23 TraesCS6A01G231400 chr1B 92.982 57 4 0 8753 8809 672032002 672032058 5.670000e-12 84.2
24 TraesCS6A01G231400 chr7A 94.340 53 3 0 8757 8809 130455202 130455254 2.040000e-11 82.4
25 TraesCS6A01G231400 chr7A 91.525 59 5 0 8751 8809 158380736 158380794 2.040000e-11 82.4
26 TraesCS6A01G231400 chr2B 90.000 60 5 1 562 621 800111202 800111144 9.480000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G231400 chr6A 436858857 436867665 8808 False 16268.000000 16268 100.000000 1 8809 1 chr6A.!!$F1 8808
1 TraesCS6A01G231400 chr6D 288552192 288560437 8245 True 4536.666667 7995 90.982667 507 8759 3 chr6D.!!$R1 8252
2 TraesCS6A01G231400 chr6D 262979126 262979627 501 False 802.000000 802 95.446000 8 512 1 chr6D.!!$F1 504
3 TraesCS6A01G231400 chr6B 449037770 449045972 8202 True 4338.333333 6711 94.908333 510 8759 3 chr6B.!!$R1 8249
4 TraesCS6A01G231400 chr2D 476394152 476394654 502 False 809.000000 809 95.644000 8 512 1 chr2D.!!$F1 504
5 TraesCS6A01G231400 chr2D 476427345 476427850 505 False 802.000000 802 95.266000 1 507 1 chr2D.!!$F2 506
6 TraesCS6A01G231400 chr2D 477853840 477854349 509 True 795.000000 795 94.737000 1 512 1 chr2D.!!$R1 511
7 TraesCS6A01G231400 chr5D 97359084 97359584 500 False 808.000000 808 95.644000 8 512 1 chr5D.!!$F1 504
8 TraesCS6A01G231400 chr7D 585082278 585082781 503 True 804.000000 804 95.455000 8 511 1 chr7D.!!$R1 503
9 TraesCS6A01G231400 chr3A 566048934 566049442 508 True 800.000000 800 95.088000 1 508 1 chr3A.!!$R1 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
831 837 0.456628 TCGATGCGACAATCCCGTAA 59.543 50.000 0.00 0.00 0.00 3.18 F
2066 2074 0.034337 TGCCTGTAGGGTTTGTCGTC 59.966 55.000 0.00 0.00 37.43 4.20 F
2076 2084 0.306533 GTTTGTCGTCGTGGTTGCAT 59.693 50.000 0.00 0.00 0.00 3.96 F
2077 2085 0.584396 TTTGTCGTCGTGGTTGCATC 59.416 50.000 0.00 0.00 0.00 3.91 F
2081 2089 1.588404 GTCGTCGTGGTTGCATCTATG 59.412 52.381 0.00 0.00 0.00 2.23 F
3054 3066 1.760613 TGCTGTACCTGCTATGTACCC 59.239 52.381 8.96 2.24 38.21 3.69 F
4460 4539 0.108019 GTGTCTCCAAAAGGACCGGT 59.892 55.000 6.92 6.92 0.00 5.28 F
4474 4553 0.476771 ACCGGTGTCACCAAAAGGAT 59.523 50.000 21.91 3.49 38.47 3.24 F
4490 4569 0.804989 GGATCAGCGTCACCAAAAGG 59.195 55.000 0.00 0.00 0.00 3.11 F
5615 5698 2.030363 CCGCAATTCCAAACACAGCTTA 60.030 45.455 0.00 0.00 0.00 3.09 F
7657 7767 0.109597 CCAAAAAGCGCTGCCACTAG 60.110 55.000 12.58 0.00 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2625 2637 0.179000 GCACAGGTCAGGATACAGGG 59.821 60.000 0.00 0.00 41.41 4.45 R
3633 3647 1.202722 GGAGACGTTTCCTGGGAACAA 60.203 52.381 17.56 0.00 42.06 2.83 R
3759 3773 3.228749 CAGCGTGACAATTTTGCTGTAG 58.771 45.455 4.45 0.00 45.96 2.74 R
3834 3848 7.179076 AGTAATATTACTGACCGTGTCCTTT 57.821 36.000 24.17 0.00 42.13 3.11 R
4061 4122 8.843308 TTATCCTTTTCAGGGATCAAATGAAT 57.157 30.769 7.15 0.00 42.03 2.57 R
4474 4553 0.181587 TTCCCTTTTGGTGACGCTGA 59.818 50.000 0.00 0.00 38.10 4.26 R
5770 5853 0.305922 GCTACATTCCAGACGCATGC 59.694 55.000 7.91 7.91 0.00 4.06 R
5781 5864 5.918608 TCATCTTAAGGACAGGCTACATTC 58.081 41.667 1.85 0.00 0.00 2.67 R
6657 6746 4.250464 TGTCAGGTTTGAGTTATTAGCCG 58.750 43.478 0.00 0.00 32.98 5.52 R
7721 7831 0.179051 CAGATGCCTCAGCCTCTTCC 60.179 60.000 0.00 0.00 40.65 3.46 R
8665 8809 0.536687 TCACGTGAGAAGGGACGACT 60.537 55.000 15.76 0.00 38.94 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.238319 TAGGACTCCTCATGGGGCGT 62.238 60.000 7.05 7.05 37.32 5.68
101 102 2.446802 GGAGGCACCCCCTAGAGG 60.447 72.222 0.00 0.00 46.60 3.69
185 190 2.229062 CTCGGTCATATCATAGCGGTGT 59.771 50.000 0.00 0.00 37.22 4.16
298 303 4.022589 AGTTCGAGGAACGTCATCAAGTTA 60.023 41.667 3.12 0.00 45.96 2.24
322 327 0.464036 TGTGCAGAACTCGAAGGTGT 59.536 50.000 0.00 0.00 0.00 4.16
371 376 4.595198 TCGTGAAGACGTATGACTACAG 57.405 45.455 0.00 0.00 46.20 2.74
389 394 1.209127 GCAACCGCGTTGTGCTAAT 59.791 52.632 15.99 0.00 44.40 1.73
539 545 1.003233 GGACTCCCGCAAAGCTCTT 60.003 57.895 0.00 0.00 0.00 2.85
540 546 1.301677 GGACTCCCGCAAAGCTCTTG 61.302 60.000 0.00 0.00 0.00 3.02
550 556 3.436704 CGCAAAGCTCTTGGTTTATCTCA 59.563 43.478 9.63 0.00 41.31 3.27
557 563 4.457257 GCTCTTGGTTTATCTCAAGCTTGT 59.543 41.667 25.19 9.72 39.92 3.16
622 628 1.205820 GTTGGACGGCTAAACACGC 59.794 57.895 0.00 0.00 0.00 5.34
624 630 2.047560 GGACGGCTAAACACGCCT 60.048 61.111 0.00 0.00 45.37 5.52
643 649 4.250305 AACCGACGGTTGCAGGCT 62.250 61.111 30.63 5.28 45.07 4.58
654 660 1.069049 GTTGCAGGCTGTTTGATGGTT 59.931 47.619 17.16 0.00 0.00 3.67
682 688 1.352056 GATGCCCTAAAAGCGTCGC 59.648 57.895 9.80 9.80 36.60 5.19
808 814 2.225491 TCTCACGCCAAACAATAGCAAC 59.775 45.455 0.00 0.00 0.00 4.17
831 837 0.456628 TCGATGCGACAATCCCGTAA 59.543 50.000 0.00 0.00 0.00 3.18
834 840 2.479837 GATGCGACAATCCCGTAATCA 58.520 47.619 0.00 0.00 0.00 2.57
919 925 7.001099 TCCTTCTCCTCGTTAGTGTTATTTT 57.999 36.000 0.00 0.00 0.00 1.82
990 997 1.071471 CACTTCCAGTTGGCGGAGT 59.929 57.895 0.00 0.00 33.01 3.85
1129 1137 2.756760 GTTGATTGATGTGCAGGATGGT 59.243 45.455 0.00 0.00 35.86 3.55
1136 1144 2.198827 TGTGCAGGATGGTCGAAAAT 57.801 45.000 0.00 0.00 35.86 1.82
1188 1196 3.554692 GCGTGGCAATCGTCGGAG 61.555 66.667 0.00 0.00 0.00 4.63
1275 1283 5.065235 AGAAATTCACATTTTTGCCCCTTG 58.935 37.500 0.00 0.00 32.35 3.61
1310 1318 1.903404 GTTTGGTGTGCAGGAGGGG 60.903 63.158 0.00 0.00 0.00 4.79
1688 1696 1.134670 GGGACAAATCTCCCTCGTCAG 60.135 57.143 0.00 0.00 46.16 3.51
2021 2029 9.261180 CTCTCTCAACTTTGTGTGTTTATCTTA 57.739 33.333 0.00 0.00 0.00 2.10
2066 2074 0.034337 TGCCTGTAGGGTTTGTCGTC 59.966 55.000 0.00 0.00 37.43 4.20
2074 2082 1.010462 GGTTTGTCGTCGTGGTTGC 60.010 57.895 0.00 0.00 0.00 4.17
2075 2083 1.707239 GGTTTGTCGTCGTGGTTGCA 61.707 55.000 0.00 0.00 0.00 4.08
2076 2084 0.306533 GTTTGTCGTCGTGGTTGCAT 59.693 50.000 0.00 0.00 0.00 3.96
2077 2085 0.584396 TTTGTCGTCGTGGTTGCATC 59.416 50.000 0.00 0.00 0.00 3.91
2081 2089 1.588404 GTCGTCGTGGTTGCATCTATG 59.412 52.381 0.00 0.00 0.00 2.23
2143 2151 3.188048 CGCTGCTTCTCTTGATTTTGTCT 59.812 43.478 0.00 0.00 0.00 3.41
2154 2162 9.003658 TCTCTTGATTTTGTCTAATTCTTGGTC 57.996 33.333 0.00 0.00 0.00 4.02
2161 2169 3.266772 TGTCTAATTCTTGGTCCTGGCAT 59.733 43.478 0.00 0.00 0.00 4.40
2214 2222 4.081087 AGCGTCATCTATTGTTGGGTACTT 60.081 41.667 0.00 0.00 0.00 2.24
2270 2282 6.374417 AGAGGTGTTAGCTTCCTTGAAATA 57.626 37.500 0.00 0.00 0.00 1.40
2315 2327 3.895232 AACTGCCGAGTCTGATTATGT 57.105 42.857 0.00 0.00 0.00 2.29
2472 2484 2.425143 TGGATGCCCTGATCAAGAAC 57.575 50.000 0.00 0.00 0.00 3.01
2493 2505 4.969484 ACGAACTTTTGACTCACCCTAAT 58.031 39.130 0.00 0.00 0.00 1.73
2743 2755 5.649782 TTGCAAGGAGGATTTCAATTCTC 57.350 39.130 0.00 0.00 39.81 2.87
2770 2782 2.280592 GCAAAGGTCCGGTCGTGT 60.281 61.111 0.00 0.00 0.00 4.49
3045 3057 9.442047 AATTCTTAGATAATATGCTGTACCTGC 57.558 33.333 1.55 1.55 0.00 4.85
3046 3058 7.782897 TCTTAGATAATATGCTGTACCTGCT 57.217 36.000 8.96 0.00 0.00 4.24
3047 3059 8.879427 TCTTAGATAATATGCTGTACCTGCTA 57.121 34.615 8.96 1.40 0.00 3.49
3053 3065 3.753294 ATGCTGTACCTGCTATGTACC 57.247 47.619 8.96 0.00 38.21 3.34
3054 3066 1.760613 TGCTGTACCTGCTATGTACCC 59.239 52.381 8.96 2.24 38.21 3.69
3188 3200 4.226761 GCCAATATTATAGCGGTTGTTGC 58.773 43.478 0.00 0.00 0.00 4.17
3335 3349 3.447229 ACATGATGATGGTACGTGAGACA 59.553 43.478 0.00 0.00 33.39 3.41
3357 3371 9.561069 AGACATTATCATTTTAGATGTACCCAC 57.439 33.333 0.00 0.00 31.59 4.61
3373 3387 2.374170 ACCCACCGTATTTTTCTGGACT 59.626 45.455 0.00 0.00 0.00 3.85
3567 3581 9.455847 GTATATCATTTCAACTTTCTTCATGCC 57.544 33.333 0.00 0.00 0.00 4.40
3759 3773 1.994463 AGGCACTCCCTTGGATGAC 59.006 57.895 0.00 0.00 43.06 3.06
3834 3848 4.728772 ACAACAATGTTGATCCTTCTGGA 58.271 39.130 30.09 0.00 41.31 3.86
3867 3881 6.345803 CGGTCAGTAATATTACTTGCATGTCG 60.346 42.308 22.81 15.53 41.82 4.35
4214 4275 6.163135 ACTGCCTCAGGTATGTTTCTATAC 57.837 41.667 0.00 0.00 35.51 1.47
4369 4430 2.173569 GGTGAGGCTAATCAAGGACCAT 59.826 50.000 0.00 0.00 0.00 3.55
4371 4432 4.273318 GTGAGGCTAATCAAGGACCATTT 58.727 43.478 0.00 0.00 0.00 2.32
4385 4464 3.895041 GGACCATTTTCTCCAAAAGGACA 59.105 43.478 0.00 0.00 35.67 4.02
4417 4496 0.462759 GGGATCAGCGTCTCCAAAGG 60.463 60.000 0.00 0.00 32.90 3.11
4420 4499 1.139853 GATCAGCGTCTCCAAAGGGAT 59.860 52.381 0.00 0.00 43.91 3.85
4424 4503 1.092345 GCGTCTCCAAAGGGATCAGC 61.092 60.000 0.00 0.00 43.91 4.26
4458 4537 1.512926 CAGTGTCTCCAAAAGGACCG 58.487 55.000 0.00 0.00 0.00 4.79
4460 4539 0.108019 GTGTCTCCAAAAGGACCGGT 59.892 55.000 6.92 6.92 0.00 5.28
4474 4553 0.476771 ACCGGTGTCACCAAAAGGAT 59.523 50.000 21.91 3.49 38.47 3.24
4490 4569 0.804989 GGATCAGCGTCACCAAAAGG 59.195 55.000 0.00 0.00 0.00 3.11
4548 4630 7.255173 GCTGATCAGTTGAAATCTGCTAATGAT 60.255 37.037 23.38 0.00 41.17 2.45
5002 5084 4.637483 TTGAAACAGCACAAGGAAGAAG 57.363 40.909 0.00 0.00 0.00 2.85
5088 5170 6.318628 TGATTTTTGTACACATATTCACGGC 58.681 36.000 0.00 0.00 0.00 5.68
5282 5364 2.064434 TGTTGTGGTTCAATGGCTGA 57.936 45.000 0.00 0.00 38.38 4.26
5297 5379 6.156429 TCAATGGCTGATATGATATGCTCTCT 59.844 38.462 0.00 0.00 0.00 3.10
5355 5438 8.568794 CATGAGAAATCAGCAATTCATATGACT 58.431 33.333 4.48 0.00 0.00 3.41
5458 5541 4.122776 CAATACAGGAAATGGTCTCTCCG 58.877 47.826 0.00 0.00 39.52 4.63
5615 5698 2.030363 CCGCAATTCCAAACACAGCTTA 60.030 45.455 0.00 0.00 0.00 3.09
5629 5712 8.587952 AAACACAGCTTATGTTTGTTTTATCC 57.412 30.769 20.14 0.00 46.05 2.59
5716 5799 4.020128 GTCTGGATGGAAGTCTAGTTGGTT 60.020 45.833 0.00 0.00 0.00 3.67
5770 5853 5.694995 AGATGTAAGTGGGGGTGAATATTG 58.305 41.667 0.00 0.00 0.00 1.90
5781 5864 2.287188 GGTGAATATTGCATGCGTCTGG 60.287 50.000 14.09 0.00 0.00 3.86
5866 5949 6.363357 CGTTGTTACTAGTACACTGTTAACCC 59.637 42.308 0.91 0.00 0.00 4.11
5997 6080 5.049474 CGACTTCCTTTCATCAAATGACACA 60.049 40.000 0.00 0.00 39.39 3.72
6528 6613 3.987745 ACTCCTGATGTACCATCTGAGT 58.012 45.455 16.91 16.91 0.00 3.41
6529 6614 5.130705 ACTCCTGATGTACCATCTGAGTA 57.869 43.478 19.23 0.00 32.89 2.59
6530 6615 5.519808 ACTCCTGATGTACCATCTGAGTAA 58.480 41.667 19.23 3.59 32.89 2.24
6531 6616 5.596361 ACTCCTGATGTACCATCTGAGTAAG 59.404 44.000 19.23 11.23 32.89 2.34
6532 6617 5.519808 TCCTGATGTACCATCTGAGTAAGT 58.480 41.667 11.31 0.00 0.00 2.24
6741 6830 9.511272 AGAATACTGCTCATATGCATAATTTCA 57.489 29.630 11.13 6.26 42.48 2.69
6950 7053 5.872963 ACTGGCAGCATGATAATCAGATTA 58.127 37.500 15.89 5.29 39.69 1.75
7057 7160 5.279809 CCACAAACCTAGCTCACCTTACTAA 60.280 44.000 0.00 0.00 0.00 2.24
7164 7274 6.210584 TCCCAAGGAGGTCATTTGTTAAATTC 59.789 38.462 0.00 0.00 34.66 2.17
7319 7429 4.099419 TGAGACTTGTTTGTGTAGAGCTCA 59.901 41.667 17.77 0.00 0.00 4.26
7430 7540 0.669625 GCACACCGTCTACAACTCCC 60.670 60.000 0.00 0.00 0.00 4.30
7657 7767 0.109597 CCAAAAAGCGCTGCCACTAG 60.110 55.000 12.58 0.00 0.00 2.57
7721 7831 1.754226 CGGAAGGAGAAGGAGGAGAAG 59.246 57.143 0.00 0.00 0.00 2.85
7819 7929 2.675658 AAGGCTTAGGCTTGAACCAA 57.324 45.000 20.25 0.00 46.51 3.67
7820 7930 1.911057 AGGCTTAGGCTTGAACCAAC 58.089 50.000 1.28 0.00 33.67 3.77
7821 7931 0.888619 GGCTTAGGCTTGAACCAACC 59.111 55.000 0.00 0.00 38.73 3.77
7822 7932 1.616159 GCTTAGGCTTGAACCAACCA 58.384 50.000 0.00 0.00 35.22 3.67
7823 7933 1.960689 GCTTAGGCTTGAACCAACCAA 59.039 47.619 0.00 0.00 35.22 3.67
7824 7934 2.288213 GCTTAGGCTTGAACCAACCAAC 60.288 50.000 0.00 0.00 35.22 3.77
7825 7935 1.989706 TAGGCTTGAACCAACCAACC 58.010 50.000 0.00 0.00 0.00 3.77
7906 8020 4.562963 GGATTGTAAACTCCTTGGTCGTCT 60.563 45.833 0.00 0.00 0.00 4.18
8169 8283 5.230306 GCTATATATTTGGTCATCGACTCGC 59.770 44.000 0.00 0.00 32.47 5.03
8170 8284 1.835121 TATTTGGTCATCGACTCGCG 58.165 50.000 0.00 0.00 42.69 5.87
8222 8336 5.689383 TTCTTTGTCTATCCTTTGTGTGC 57.311 39.130 0.00 0.00 0.00 4.57
8225 8339 5.769662 TCTTTGTCTATCCTTTGTGTGCATT 59.230 36.000 0.00 0.00 0.00 3.56
8226 8340 5.375417 TTGTCTATCCTTTGTGTGCATTG 57.625 39.130 0.00 0.00 0.00 2.82
8227 8341 3.191162 TGTCTATCCTTTGTGTGCATTGC 59.809 43.478 0.46 0.46 0.00 3.56
8228 8342 3.441572 GTCTATCCTTTGTGTGCATTGCT 59.558 43.478 10.49 0.00 0.00 3.91
8229 8343 4.081406 TCTATCCTTTGTGTGCATTGCTT 58.919 39.130 10.49 0.00 0.00 3.91
8240 8354 3.502237 CATTGCTTGCAGGGTTGAC 57.498 52.632 0.00 0.00 0.00 3.18
8241 8355 0.037975 CATTGCTTGCAGGGTTGACC 60.038 55.000 0.00 0.00 40.67 4.02
8242 8356 1.526575 ATTGCTTGCAGGGTTGACCG 61.527 55.000 0.00 0.00 46.96 4.79
8243 8357 2.594592 GCTTGCAGGGTTGACCGT 60.595 61.111 0.00 0.00 46.96 4.83
8244 8358 2.617274 GCTTGCAGGGTTGACCGTC 61.617 63.158 0.00 0.00 46.96 4.79
8245 8359 1.966451 CTTGCAGGGTTGACCGTCC 60.966 63.158 0.00 0.00 46.96 4.79
8261 8384 2.358737 CCTGACCGGAGCACAACC 60.359 66.667 9.46 0.00 33.16 3.77
8367 8495 2.364970 TGTTTTGCAGTGCCTTGCTAAT 59.635 40.909 13.72 0.00 44.38 1.73
8471 8603 1.603455 CGGATGTTGGTGGGCAAGT 60.603 57.895 0.00 0.00 0.00 3.16
8541 8673 2.020720 ACAACGTGATTCAACAAGGCA 58.979 42.857 0.00 0.00 0.00 4.75
8542 8674 2.033299 ACAACGTGATTCAACAAGGCAG 59.967 45.455 0.00 0.00 0.00 4.85
8543 8675 1.238439 ACGTGATTCAACAAGGCAGG 58.762 50.000 0.00 0.00 0.00 4.85
8544 8676 1.202758 ACGTGATTCAACAAGGCAGGA 60.203 47.619 0.00 0.00 0.00 3.86
8545 8677 1.197721 CGTGATTCAACAAGGCAGGAC 59.802 52.381 0.00 0.00 0.00 3.85
8546 8678 1.541588 GTGATTCAACAAGGCAGGACC 59.458 52.381 0.00 0.00 39.61 4.46
8759 8903 6.238293 GGTCAACTCACACTTGTAAAAGGTAC 60.238 42.308 0.00 0.00 0.00 3.34
8761 8905 6.759827 TCAACTCACACTTGTAAAAGGTACTC 59.240 38.462 0.00 0.00 38.49 2.59
8762 8906 5.608449 ACTCACACTTGTAAAAGGTACTCC 58.392 41.667 0.00 0.00 38.49 3.85
8763 8907 4.964593 TCACACTTGTAAAAGGTACTCCC 58.035 43.478 0.00 0.00 38.49 4.30
8773 8917 2.019807 AGGTACTCCCTTTGTTCGGA 57.980 50.000 0.00 0.00 42.73 4.55
8774 8918 2.332117 AGGTACTCCCTTTGTTCGGAA 58.668 47.619 0.00 0.00 42.73 4.30
8775 8919 2.910977 AGGTACTCCCTTTGTTCGGAAT 59.089 45.455 0.00 0.00 42.73 3.01
8776 8920 3.329814 AGGTACTCCCTTTGTTCGGAATT 59.670 43.478 0.00 0.00 42.73 2.17
8777 8921 4.533311 AGGTACTCCCTTTGTTCGGAATTA 59.467 41.667 0.00 0.00 42.73 1.40
8778 8922 4.633126 GGTACTCCCTTTGTTCGGAATTAC 59.367 45.833 0.00 0.00 0.00 1.89
8779 8923 4.635699 ACTCCCTTTGTTCGGAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
8780 8924 4.981812 ACTCCCTTTGTTCGGAATTACTT 58.018 39.130 0.00 0.00 0.00 2.24
8781 8925 4.760204 ACTCCCTTTGTTCGGAATTACTTG 59.240 41.667 0.00 0.00 0.00 3.16
8782 8926 4.721132 TCCCTTTGTTCGGAATTACTTGT 58.279 39.130 0.00 0.00 0.00 3.16
8783 8927 4.758165 TCCCTTTGTTCGGAATTACTTGTC 59.242 41.667 0.00 0.00 0.00 3.18
8784 8928 4.760204 CCCTTTGTTCGGAATTACTTGTCT 59.240 41.667 0.00 0.00 0.00 3.41
8785 8929 5.106673 CCCTTTGTTCGGAATTACTTGTCTC 60.107 44.000 0.00 0.00 0.00 3.36
8786 8930 5.389516 CCTTTGTTCGGAATTACTTGTCTCG 60.390 44.000 0.00 0.00 0.00 4.04
8787 8931 3.581755 TGTTCGGAATTACTTGTCTCGG 58.418 45.455 0.00 0.00 0.00 4.63
8788 8932 3.256383 TGTTCGGAATTACTTGTCTCGGA 59.744 43.478 0.00 0.00 0.00 4.55
8789 8933 4.081862 TGTTCGGAATTACTTGTCTCGGAT 60.082 41.667 0.00 0.00 0.00 4.18
8790 8934 5.125900 TGTTCGGAATTACTTGTCTCGGATA 59.874 40.000 0.00 0.00 0.00 2.59
8791 8935 6.183360 TGTTCGGAATTACTTGTCTCGGATAT 60.183 38.462 0.00 0.00 0.00 1.63
8792 8936 5.769367 TCGGAATTACTTGTCTCGGATATG 58.231 41.667 0.00 0.00 0.00 1.78
8793 8937 5.533528 TCGGAATTACTTGTCTCGGATATGA 59.466 40.000 0.00 0.00 0.00 2.15
8794 8938 6.040054 TCGGAATTACTTGTCTCGGATATGAA 59.960 38.462 0.00 0.00 0.00 2.57
8795 8939 6.868864 CGGAATTACTTGTCTCGGATATGAAT 59.131 38.462 0.00 0.00 0.00 2.57
8796 8940 7.148738 CGGAATTACTTGTCTCGGATATGAATG 60.149 40.741 0.00 0.00 0.00 2.67
8797 8941 7.657761 GGAATTACTTGTCTCGGATATGAATGT 59.342 37.037 0.00 0.00 0.00 2.71
8798 8942 9.692749 GAATTACTTGTCTCGGATATGAATGTA 57.307 33.333 0.00 0.00 0.00 2.29
8800 8944 9.862371 ATTACTTGTCTCGGATATGAATGTATC 57.138 33.333 0.00 0.00 0.00 2.24
8801 8945 7.531857 ACTTGTCTCGGATATGAATGTATCT 57.468 36.000 0.00 0.00 32.78 1.98
8802 8946 8.637196 ACTTGTCTCGGATATGAATGTATCTA 57.363 34.615 0.00 0.00 32.78 1.98
8803 8947 9.249053 ACTTGTCTCGGATATGAATGTATCTAT 57.751 33.333 0.00 0.00 32.78 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 2.562298 TCCAAGGGATCAATTGTTGTGC 59.438 45.455 5.13 0.00 0.00 4.57
243 248 1.625818 GAGCTTTGAGGGAGAGTTCCA 59.374 52.381 0.00 0.00 45.98 3.53
284 289 4.784079 GCACACGTTTAACTTGATGACGTT 60.784 41.667 8.56 0.00 43.53 3.99
298 303 1.593006 CTTCGAGTTCTGCACACGTTT 59.407 47.619 0.00 0.00 40.12 3.60
322 327 3.334751 CAAGCACCGAACGCACGA 61.335 61.111 0.00 0.00 35.09 4.35
371 376 1.065031 CATTAGCACAACGCGGTTGC 61.065 55.000 19.22 19.22 46.20 4.17
515 521 1.028905 CTTTGCGGGAGTCCAAACAA 58.971 50.000 12.30 8.98 0.00 2.83
519 525 1.302511 GAGCTTTGCGGGAGTCCAA 60.303 57.895 12.30 0.00 0.00 3.53
520 526 1.768684 AAGAGCTTTGCGGGAGTCCA 61.769 55.000 12.30 0.00 0.00 4.02
539 545 4.265904 TCGACAAGCTTGAGATAAACCA 57.734 40.909 32.50 5.80 0.00 3.67
540 546 5.607119 TTTCGACAAGCTTGAGATAAACC 57.393 39.130 32.50 9.42 0.00 3.27
622 628 2.280524 TGCAACCGTCGGTTCAGG 60.281 61.111 26.61 16.62 43.05 3.86
624 630 2.280524 CCTGCAACCGTCGGTTCA 60.281 61.111 26.61 22.94 43.05 3.18
643 649 2.293122 CTCCAAAGCGAACCATCAAACA 59.707 45.455 0.00 0.00 0.00 2.83
654 660 0.908910 TTAGGGCATCTCCAAAGCGA 59.091 50.000 0.00 0.00 36.21 4.93
682 688 3.032017 TGCACGAAAGAGAAGAGAAGG 57.968 47.619 0.00 0.00 0.00 3.46
765 771 2.547211 AGTAATGACGCGCTATAGTCGT 59.453 45.455 17.72 17.72 40.05 4.34
831 837 2.039624 AGAGGGGTGAGGCGTGAT 59.960 61.111 0.00 0.00 0.00 3.06
834 840 2.151307 TACAGAGAGGGGTGAGGCGT 62.151 60.000 0.00 0.00 0.00 5.68
1129 1137 3.064820 GGCAATTTCCGCTAGATTTTCGA 59.935 43.478 0.00 0.00 0.00 3.71
1136 1144 2.354510 CGATTTGGCAATTTCCGCTAGA 59.645 45.455 0.00 0.00 0.00 2.43
1275 1283 6.928492 ACACCAAACCATCAATCAACAATAAC 59.072 34.615 0.00 0.00 0.00 1.89
1310 1318 5.789521 TGGCAATTTTTCCTAGGTTTTAGC 58.210 37.500 9.08 5.83 0.00 3.09
1374 1382 2.464459 CCGTCGCTTGCTTGGATCC 61.464 63.158 4.20 4.20 0.00 3.36
2021 2029 4.260866 CGTAACGGACACAGAAAACCAAAT 60.261 41.667 0.00 0.00 0.00 2.32
2049 2057 0.316204 ACGACGACAAACCCTACAGG 59.684 55.000 0.00 0.00 43.78 4.00
2050 2058 1.415374 CACGACGACAAACCCTACAG 58.585 55.000 0.00 0.00 0.00 2.74
2066 2074 1.382522 AAGCCATAGATGCAACCACG 58.617 50.000 0.00 0.00 0.00 4.94
2074 2082 4.758674 ACAATCATCCGAAAGCCATAGATG 59.241 41.667 0.00 0.00 36.50 2.90
2075 2083 4.978099 ACAATCATCCGAAAGCCATAGAT 58.022 39.130 0.00 0.00 0.00 1.98
2076 2084 4.422073 ACAATCATCCGAAAGCCATAGA 57.578 40.909 0.00 0.00 0.00 1.98
2077 2085 6.808008 ATTACAATCATCCGAAAGCCATAG 57.192 37.500 0.00 0.00 0.00 2.23
2081 2089 5.239525 AGCTTATTACAATCATCCGAAAGCC 59.760 40.000 0.00 0.00 38.00 4.35
2118 2126 2.758736 AATCAAGAGAAGCAGCGACT 57.241 45.000 0.00 0.00 0.00 4.18
2143 2151 5.656416 CCTTTTATGCCAGGACCAAGAATTA 59.344 40.000 0.00 0.00 30.81 1.40
2154 2162 3.356529 ACACTCTCCTTTTATGCCAGG 57.643 47.619 0.00 0.00 0.00 4.45
2161 2169 7.013274 CCAATGACTGAAAACACTCTCCTTTTA 59.987 37.037 0.00 0.00 0.00 1.52
2270 2282 2.553904 CCAATTCTGAAGAGCAGGGTGT 60.554 50.000 0.00 0.00 44.98 4.16
2315 2327 3.762407 TTAAGCTATAATGGCCGCTGA 57.238 42.857 0.00 0.00 32.22 4.26
2323 2335 8.615211 TCACATGAGCAAGTTTAAGCTATAATG 58.385 33.333 0.00 0.00 42.04 1.90
2472 2484 4.378459 GCATTAGGGTGAGTCAAAAGTTCG 60.378 45.833 0.00 0.00 0.00 3.95
2493 2505 0.394938 TAGCAAGTTTGACCTCGGCA 59.605 50.000 0.00 0.00 0.00 5.69
2625 2637 0.179000 GCACAGGTCAGGATACAGGG 59.821 60.000 0.00 0.00 41.41 4.45
2743 2755 0.951040 GGACCTTTGCCACAGTCTCG 60.951 60.000 0.00 0.00 0.00 4.04
2884 2896 4.593634 ACCCAGAAACTAGCAAGAAGTAGT 59.406 41.667 0.00 0.00 0.00 2.73
2991 3003 9.959749 GTCCATTAAGAACACATAACAAGAAAA 57.040 29.630 0.00 0.00 0.00 2.29
2992 3004 9.126151 TGTCCATTAAGAACACATAACAAGAAA 57.874 29.630 0.00 0.00 0.00 2.52
2993 3005 8.684386 TGTCCATTAAGAACACATAACAAGAA 57.316 30.769 0.00 0.00 0.00 2.52
2994 3006 8.684386 TTGTCCATTAAGAACACATAACAAGA 57.316 30.769 0.00 0.00 0.00 3.02
2995 3007 9.912634 ATTTGTCCATTAAGAACACATAACAAG 57.087 29.630 0.00 0.00 0.00 3.16
2997 3009 9.906660 GAATTTGTCCATTAAGAACACATAACA 57.093 29.630 0.00 0.00 0.00 2.41
3047 3059 8.957466 GCTAGATTGTTAAGAAAAAGGGTACAT 58.043 33.333 0.00 0.00 0.00 2.29
3155 3167 4.924305 ATAATATTGGCAGCTTGGTGTG 57.076 40.909 0.00 0.00 0.00 3.82
3160 3172 3.753272 ACCGCTATAATATTGGCAGCTTG 59.247 43.478 12.88 8.34 0.00 4.01
3335 3349 7.514721 ACGGTGGGTACATCTAAAATGATAAT 58.485 34.615 0.00 0.00 0.00 1.28
3357 3371 6.743575 AGAATCAAGTCCAGAAAAATACGG 57.256 37.500 0.00 0.00 0.00 4.02
3567 3581 5.943416 TGGGCAAGGTAAATCCATATTATCG 59.057 40.000 0.00 0.00 39.02 2.92
3633 3647 1.202722 GGAGACGTTTCCTGGGAACAA 60.203 52.381 17.56 0.00 42.06 2.83
3759 3773 3.228749 CAGCGTGACAATTTTGCTGTAG 58.771 45.455 4.45 0.00 45.96 2.74
3834 3848 7.179076 AGTAATATTACTGACCGTGTCCTTT 57.821 36.000 24.17 0.00 42.13 3.11
4061 4122 8.843308 TTATCCTTTTCAGGGATCAAATGAAT 57.157 30.769 7.15 0.00 42.03 2.57
4214 4275 3.265601 GGGATCCCCTTCCATGGG 58.734 66.667 21.42 0.00 46.68 4.00
4345 4406 3.209410 GTCCTTGATTAGCCTCACCATG 58.791 50.000 0.00 0.00 0.00 3.66
4385 4464 0.984230 TGATCCCTTTGGAGACGCTT 59.016 50.000 0.00 0.00 46.08 4.68
4417 4496 0.462759 CCCTTTGGAGACGCTGATCC 60.463 60.000 0.00 0.00 36.05 3.36
4420 4499 1.671742 GTCCCTTTGGAGACGCTGA 59.328 57.895 0.00 0.00 42.85 4.26
4424 4503 0.320771 CACTGGTCCCTTTGGAGACG 60.321 60.000 0.00 0.00 42.85 4.18
4458 4537 1.541588 GCTGATCCTTTTGGTGACACC 59.458 52.381 18.28 18.28 42.67 4.16
4460 4539 1.202758 ACGCTGATCCTTTTGGTGACA 60.203 47.619 0.00 0.00 41.38 3.58
4474 4553 0.181587 TTCCCTTTTGGTGACGCTGA 59.818 50.000 0.00 0.00 38.10 4.26
4490 4569 0.250901 TTCAGGCTGTTCAGGCTTCC 60.251 55.000 22.91 6.19 43.13 3.46
5085 5167 1.781555 CTGTTAACAGCAGACGCCG 59.218 57.895 22.03 0.00 39.83 6.46
5282 5364 6.370186 TCCAGCAAAGAGAGCATATCATAT 57.630 37.500 0.00 0.00 0.00 1.78
5297 5379 6.070538 AGCTCTAGATTAGAACTTCCAGCAAA 60.071 38.462 0.00 0.00 33.75 3.68
5458 5541 1.353091 ACCCCTTGGTCAGAGACTTC 58.647 55.000 0.00 0.00 43.06 3.01
5716 5799 3.620488 GCCACCATACTTTGATCCTTGA 58.380 45.455 0.00 0.00 0.00 3.02
5770 5853 0.305922 GCTACATTCCAGACGCATGC 59.694 55.000 7.91 7.91 0.00 4.06
5781 5864 5.918608 TCATCTTAAGGACAGGCTACATTC 58.081 41.667 1.85 0.00 0.00 2.67
6657 6746 4.250464 TGTCAGGTTTGAGTTATTAGCCG 58.750 43.478 0.00 0.00 32.98 5.52
7164 7274 3.745975 TGCTTGGAGAAATCAGTAACACG 59.254 43.478 0.00 0.00 0.00 4.49
7198 7308 2.271800 CGTGATTCCTCTCCCTTTTCG 58.728 52.381 0.00 0.00 0.00 3.46
7430 7540 4.060205 CAGTTTTCCCCTTTGATTTGCTG 58.940 43.478 0.00 0.00 0.00 4.41
7487 7597 6.207417 CCTTGCCTTCTTTCTTAATCTCAACA 59.793 38.462 0.00 0.00 0.00 3.33
7657 7767 0.969409 ACTACCCGCCACTGGAGTAC 60.969 60.000 0.00 0.00 0.00 2.73
7721 7831 0.179051 CAGATGCCTCAGCCTCTTCC 60.179 60.000 0.00 0.00 40.65 3.46
7818 7928 0.323542 TCACGGTTGGTTGGTTGGTT 60.324 50.000 0.00 0.00 0.00 3.67
7819 7929 0.323542 TTCACGGTTGGTTGGTTGGT 60.324 50.000 0.00 0.00 0.00 3.67
7820 7930 0.101579 GTTCACGGTTGGTTGGTTGG 59.898 55.000 0.00 0.00 0.00 3.77
7821 7931 1.099689 AGTTCACGGTTGGTTGGTTG 58.900 50.000 0.00 0.00 0.00 3.77
7822 7932 1.746787 GAAGTTCACGGTTGGTTGGTT 59.253 47.619 0.00 0.00 0.00 3.67
7823 7933 1.385528 GAAGTTCACGGTTGGTTGGT 58.614 50.000 0.00 0.00 0.00 3.67
7824 7934 0.666374 GGAAGTTCACGGTTGGTTGG 59.334 55.000 5.01 0.00 0.00 3.77
7825 7935 0.666374 GGGAAGTTCACGGTTGGTTG 59.334 55.000 5.01 0.00 0.00 3.77
7958 8072 2.209273 CAACAGACACGGACAATGACA 58.791 47.619 0.00 0.00 0.00 3.58
7968 8082 2.353406 CCCCCTAACTACAACAGACACG 60.353 54.545 0.00 0.00 0.00 4.49
8152 8266 1.421410 GCGCGAGTCGATGACCAAAT 61.421 55.000 18.61 0.00 41.67 2.32
8153 8267 2.092291 GCGCGAGTCGATGACCAAA 61.092 57.895 18.61 0.00 41.67 3.28
8222 8336 0.037975 GGTCAACCCTGCAAGCAATG 60.038 55.000 0.00 0.00 0.00 2.82
8225 8339 2.594303 CGGTCAACCCTGCAAGCA 60.594 61.111 0.00 0.00 0.00 3.91
8226 8340 2.594592 ACGGTCAACCCTGCAAGC 60.595 61.111 0.00 0.00 0.00 4.01
8227 8341 1.966451 GGACGGTCAACCCTGCAAG 60.966 63.158 10.76 0.00 0.00 4.01
8228 8342 2.112297 GGACGGTCAACCCTGCAA 59.888 61.111 10.76 0.00 0.00 4.08
8229 8343 2.847234 AGGACGGTCAACCCTGCA 60.847 61.111 10.76 0.00 0.00 4.41
8231 8345 1.004918 GTCAGGACGGTCAACCCTG 60.005 63.158 10.76 8.74 46.64 4.45
8232 8346 2.214920 GGTCAGGACGGTCAACCCT 61.215 63.158 10.76 0.00 0.00 4.34
8233 8347 2.346365 GGTCAGGACGGTCAACCC 59.654 66.667 10.76 0.33 0.00 4.11
8234 8348 2.048503 CGGTCAGGACGGTCAACC 60.049 66.667 10.76 12.44 0.00 3.77
8235 8349 2.048503 CCGGTCAGGACGGTCAAC 60.049 66.667 10.76 4.89 46.03 3.18
8241 8355 3.220999 TTGTGCTCCGGTCAGGACG 62.221 63.158 9.73 0.00 45.98 4.79
8242 8356 1.668151 GTTGTGCTCCGGTCAGGAC 60.668 63.158 7.74 7.74 45.98 3.85
8244 8358 2.358737 GGTTGTGCTCCGGTCAGG 60.359 66.667 0.00 0.00 42.97 3.86
8245 8359 1.227823 TTGGTTGTGCTCCGGTCAG 60.228 57.895 0.00 0.00 0.00 3.51
8367 8495 0.756294 ATGGACGTGAACCACTGTCA 59.244 50.000 16.97 5.54 40.36 3.58
8411 8539 4.833478 AGAGAGATAGGCAGCAAAGAAA 57.167 40.909 0.00 0.00 0.00 2.52
8542 8674 1.228552 TTGCAAGGCAGGAAGGTCC 60.229 57.895 0.00 0.00 40.61 4.46
8543 8675 0.538287 ACTTGCAAGGCAGGAAGGTC 60.538 55.000 29.18 0.00 40.75 3.85
8544 8676 0.771127 TACTTGCAAGGCAGGAAGGT 59.229 50.000 29.18 9.23 40.75 3.50
8545 8677 1.747355 CATACTTGCAAGGCAGGAAGG 59.253 52.381 29.18 3.16 40.75 3.46
8546 8678 2.715046 TCATACTTGCAAGGCAGGAAG 58.285 47.619 29.18 12.07 40.61 3.46
8547 8679 2.877097 TCATACTTGCAAGGCAGGAA 57.123 45.000 29.18 7.79 40.61 3.36
8665 8809 0.536687 TCACGTGAGAAGGGACGACT 60.537 55.000 15.76 0.00 38.94 4.18
8759 8903 4.760204 ACAAGTAATTCCGAACAAAGGGAG 59.240 41.667 0.00 0.00 33.01 4.30
8760 8904 4.721132 ACAAGTAATTCCGAACAAAGGGA 58.279 39.130 0.00 0.00 0.00 4.20
8761 8905 4.760204 AGACAAGTAATTCCGAACAAAGGG 59.240 41.667 0.00 0.00 0.00 3.95
8762 8906 5.389516 CGAGACAAGTAATTCCGAACAAAGG 60.390 44.000 0.00 0.00 0.00 3.11
8763 8907 5.389516 CCGAGACAAGTAATTCCGAACAAAG 60.390 44.000 0.00 0.00 0.00 2.77
8764 8908 4.449743 CCGAGACAAGTAATTCCGAACAAA 59.550 41.667 0.00 0.00 0.00 2.83
8765 8909 3.991773 CCGAGACAAGTAATTCCGAACAA 59.008 43.478 0.00 0.00 0.00 2.83
8766 8910 3.256383 TCCGAGACAAGTAATTCCGAACA 59.744 43.478 0.00 0.00 0.00 3.18
8767 8911 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
8768 8912 4.730949 ATCCGAGACAAGTAATTCCGAA 57.269 40.909 0.00 0.00 0.00 4.30
8769 8913 5.533528 TCATATCCGAGACAAGTAATTCCGA 59.466 40.000 0.00 0.00 0.00 4.55
8770 8914 5.769367 TCATATCCGAGACAAGTAATTCCG 58.231 41.667 0.00 0.00 0.00 4.30
8771 8915 7.657761 ACATTCATATCCGAGACAAGTAATTCC 59.342 37.037 0.00 0.00 0.00 3.01
8772 8916 8.594881 ACATTCATATCCGAGACAAGTAATTC 57.405 34.615 0.00 0.00 0.00 2.17
8774 8918 9.862371 GATACATTCATATCCGAGACAAGTAAT 57.138 33.333 0.00 0.00 0.00 1.89
8775 8919 9.078990 AGATACATTCATATCCGAGACAAGTAA 57.921 33.333 0.00 0.00 32.76 2.24
8776 8920 8.637196 AGATACATTCATATCCGAGACAAGTA 57.363 34.615 0.00 0.00 32.76 2.24
8777 8921 7.531857 AGATACATTCATATCCGAGACAAGT 57.468 36.000 0.00 0.00 32.76 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.