Multiple sequence alignment - TraesCS6A01G230300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G230300 chr6A 100.000 2579 0 0 2612 5190 433965731 433963153 0.000000e+00 4763
1 TraesCS6A01G230300 chr6A 100.000 2311 0 0 1 2311 433968342 433966032 0.000000e+00 4268
2 TraesCS6A01G230300 chr6A 93.333 300 20 0 278 577 522884511 522884212 1.330000e-120 444
3 TraesCS6A01G230300 chr6A 93.651 252 16 0 2612 2863 558103087 558102836 1.360000e-100 377
4 TraesCS6A01G230300 chr6B 95.727 1334 40 12 2878 4209 450897758 450899076 0.000000e+00 2132
5 TraesCS6A01G230300 chr6B 96.296 540 16 2 575 1111 450897235 450897773 0.000000e+00 883
6 TraesCS6A01G230300 chr6B 94.710 397 13 4 4207 4603 450899105 450899493 1.240000e-170 610
7 TraesCS6A01G230300 chr6B 92.580 283 6 3 1 269 450896948 450897229 4.870000e-105 392
8 TraesCS6A01G230300 chr6B 90.708 226 10 6 4457 4682 450899488 450899702 1.830000e-74 291
9 TraesCS6A01G230300 chr6B 89.189 111 6 3 5086 5190 450900021 450900131 3.260000e-27 134
10 TraesCS6A01G230300 chr2D 95.670 1201 51 1 1109 2309 196858052 196856853 0.000000e+00 1929
11 TraesCS6A01G230300 chr2D 95.711 1189 51 0 1121 2309 43809656 43810844 0.000000e+00 1914
12 TraesCS6A01G230300 chr2D 94.613 297 14 2 280 575 393583099 393583394 4.740000e-125 459
13 TraesCS6A01G230300 chr2D 93.377 302 19 1 275 575 181312105 181311804 3.690000e-121 446
14 TraesCS6A01G230300 chr2D 82.500 160 16 11 3357 3508 508367892 508367737 4.220000e-26 130
15 TraesCS6A01G230300 chr2D 81.875 160 17 11 3357 3508 498945791 498945636 1.960000e-24 124
16 TraesCS6A01G230300 chr1D 95.879 1189 49 0 1121 2309 490442935 490441747 0.000000e+00 1925
17 TraesCS6A01G230300 chr1D 93.046 302 20 1 277 577 456276759 456276458 1.720000e-119 440
18 TraesCS6A01G230300 chr1D 93.359 256 16 1 2612 2867 490441700 490441446 1.360000e-100 377
19 TraesCS6A01G230300 chr1D 81.875 160 17 11 3357 3508 12474052 12473897 1.960000e-24 124
20 TraesCS6A01G230300 chr1D 80.952 168 18 13 3349 3508 316089564 316089725 2.540000e-23 121
21 TraesCS6A01G230300 chr4B 95.206 1189 57 0 1121 2309 67912155 67910967 0.000000e+00 1881
22 TraesCS6A01G230300 chr5B 95.206 1189 55 1 1121 2309 87915521 87916707 0.000000e+00 1879
23 TraesCS6A01G230300 chr6D 95.042 1190 57 2 1121 2309 289494865 289496053 0.000000e+00 1869
24 TraesCS6A01G230300 chr6D 89.531 917 45 22 4289 5190 290319984 290320864 0.000000e+00 1114
25 TraesCS6A01G230300 chr6D 95.717 537 22 1 575 1111 290317474 290318009 0.000000e+00 863
26 TraesCS6A01G230300 chr6D 96.815 471 15 0 2878 3348 290317994 290318464 0.000000e+00 787
27 TraesCS6A01G230300 chr6D 91.388 418 26 8 3579 3993 290319064 290319474 9.760000e-157 564
28 TraesCS6A01G230300 chr6D 95.105 286 5 3 1 280 290317194 290317476 4.770000e-120 442
29 TraesCS6A01G230300 chr6D 94.712 208 9 2 3985 4192 290319537 290319742 6.480000e-84 322
30 TraesCS6A01G230300 chr6D 90.909 231 8 3 3345 3574 290318793 290319011 1.090000e-76 298
31 TraesCS6A01G230300 chr6D 81.875 160 17 11 3357 3508 342549977 342549822 1.960000e-24 124
32 TraesCS6A01G230300 chr6D 88.506 87 10 0 4207 4293 290319847 290319933 7.110000e-19 106
33 TraesCS6A01G230300 chr5D 95.126 1190 50 4 1121 2309 482147199 482146017 0.000000e+00 1869
34 TraesCS6A01G230300 chr5D 94.576 295 15 1 280 574 209014694 209014987 6.130000e-124 455
35 TraesCS6A01G230300 chr3A 94.746 1199 63 0 1111 2309 64323056 64321858 0.000000e+00 1866
36 TraesCS6A01G230300 chr3A 93.688 301 18 1 278 577 444288561 444288261 2.850000e-122 449
37 TraesCS6A01G230300 chr3A 92.434 304 21 2 276 577 234942014 234941711 2.870000e-117 433
38 TraesCS6A01G230300 chr1B 94.954 1189 58 2 1121 2309 45813269 45814455 0.000000e+00 1862
39 TraesCS6A01G230300 chr7B 93.355 301 19 1 278 577 643379903 643379603 1.330000e-120 444
40 TraesCS6A01G230300 chr2A 93.624 298 17 2 280 575 531597617 531597914 1.330000e-120 444
41 TraesCS6A01G230300 chr2A 94.922 256 13 0 2612 2867 514816313 514816568 8.090000e-108 401
42 TraesCS6A01G230300 chr7D 94.422 251 13 1 2617 2867 99188557 99188308 8.150000e-103 385
43 TraesCS6A01G230300 chr7D 93.725 255 15 1 2612 2866 226122695 226122442 1.050000e-101 381
44 TraesCS6A01G230300 chr4D 93.774 257 14 2 2612 2867 489333773 489333518 8.150000e-103 385
45 TraesCS6A01G230300 chr4D 84.456 193 25 5 686 876 388249316 388249127 8.870000e-43 185
46 TraesCS6A01G230300 chr3D 93.750 256 16 0 2612 2867 4348976 4348721 8.150000e-103 385
47 TraesCS6A01G230300 chr3D 93.333 255 17 0 2612 2866 454211557 454211303 1.360000e-100 377
48 TraesCS6A01G230300 chr3D 81.875 160 17 11 3357 3508 428574608 428574453 1.960000e-24 124
49 TraesCS6A01G230300 chr3D 81.761 159 19 10 3357 3508 451928019 451928174 1.960000e-24 124
50 TraesCS6A01G230300 chr4A 93.750 256 15 1 2612 2867 708578162 708578416 2.930000e-102 383


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G230300 chr6A 433963153 433968342 5189 True 4515.500000 4763 100.000000 1 5190 2 chr6A.!!$R3 5189
1 TraesCS6A01G230300 chr6B 450896948 450900131 3183 False 740.333333 2132 93.201667 1 5190 6 chr6B.!!$F1 5189
2 TraesCS6A01G230300 chr2D 196856853 196858052 1199 True 1929.000000 1929 95.670000 1109 2309 1 chr2D.!!$R2 1200
3 TraesCS6A01G230300 chr2D 43809656 43810844 1188 False 1914.000000 1914 95.711000 1121 2309 1 chr2D.!!$F1 1188
4 TraesCS6A01G230300 chr1D 490441446 490442935 1489 True 1151.000000 1925 94.619000 1121 2867 2 chr1D.!!$R3 1746
5 TraesCS6A01G230300 chr4B 67910967 67912155 1188 True 1881.000000 1881 95.206000 1121 2309 1 chr4B.!!$R1 1188
6 TraesCS6A01G230300 chr5B 87915521 87916707 1186 False 1879.000000 1879 95.206000 1121 2309 1 chr5B.!!$F1 1188
7 TraesCS6A01G230300 chr6D 289494865 289496053 1188 False 1869.000000 1869 95.042000 1121 2309 1 chr6D.!!$F1 1188
8 TraesCS6A01G230300 chr6D 290317194 290320864 3670 False 562.000000 1114 92.835375 1 5190 8 chr6D.!!$F2 5189
9 TraesCS6A01G230300 chr5D 482146017 482147199 1182 True 1869.000000 1869 95.126000 1121 2309 1 chr5D.!!$R1 1188
10 TraesCS6A01G230300 chr3A 64321858 64323056 1198 True 1866.000000 1866 94.746000 1111 2309 1 chr3A.!!$R1 1198
11 TraesCS6A01G230300 chr1B 45813269 45814455 1186 False 1862.000000 1862 94.954000 1121 2309 1 chr1B.!!$F1 1188

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
897 921 0.394762 ACCGAGAATGCATGCACCAT 60.395 50.0 25.37 12.66 0.00 3.55 F
1270 1294 0.394565 GATGAAGGGGCGCAGATAGT 59.605 55.0 10.83 0.00 0.00 2.12 F
2875 2901 0.249398 CTCGGGGGTCGTTTGATTCT 59.751 55.0 0.00 0.00 40.32 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2126 2151 0.042581 TCTGGATCTGGTGGTGCCTA 59.957 55.0 0.0 0.0 38.35 3.93 R
2877 2903 0.539207 TTGCACTTGTAGCCCATGCA 60.539 50.0 0.0 0.0 44.19 3.96 R
4284 4854 0.031585 GAAACGTTGGCAGGGGAAAC 59.968 55.0 0.0 0.0 0.00 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.065564 TGATGGAATCCACGATGCACA 60.066 47.619 3.09 0.00 44.73 4.57
41 42 6.421801 CACGATGCACATAATCTTGTATCTGA 59.578 38.462 0.00 0.00 33.91 3.27
279 300 8.865420 CCTCATAGAGGCATAGTAACTAGTAA 57.135 38.462 0.00 0.00 43.29 2.24
280 301 8.952278 CCTCATAGAGGCATAGTAACTAGTAAG 58.048 40.741 0.00 0.00 43.29 2.34
281 302 9.509956 CTCATAGAGGCATAGTAACTAGTAAGT 57.490 37.037 0.00 0.00 37.65 2.24
282 303 9.504708 TCATAGAGGCATAGTAACTAGTAAGTC 57.495 37.037 0.00 0.00 33.75 3.01
283 304 8.732531 CATAGAGGCATAGTAACTAGTAAGTCC 58.267 40.741 0.00 0.00 33.75 3.85
284 305 6.913545 AGAGGCATAGTAACTAGTAAGTCCT 58.086 40.000 0.00 0.00 33.75 3.85
285 306 6.999871 AGAGGCATAGTAACTAGTAAGTCCTC 59.000 42.308 0.00 6.57 33.75 3.71
286 307 6.069994 AGGCATAGTAACTAGTAAGTCCTCC 58.930 44.000 0.00 0.00 33.75 4.30
287 308 6.069994 GGCATAGTAACTAGTAAGTCCTCCT 58.930 44.000 0.00 0.00 33.75 3.69
288 309 6.550481 GGCATAGTAACTAGTAAGTCCTCCTT 59.450 42.308 0.00 0.00 33.75 3.36
289 310 7.069702 GGCATAGTAACTAGTAAGTCCTCCTTT 59.930 40.741 0.00 0.00 33.75 3.11
290 311 7.921745 GCATAGTAACTAGTAAGTCCTCCTTTG 59.078 40.741 0.00 0.00 33.75 2.77
291 312 6.854091 AGTAACTAGTAAGTCCTCCTTTGG 57.146 41.667 0.00 0.00 33.75 3.28
292 313 6.321321 AGTAACTAGTAAGTCCTCCTTTGGT 58.679 40.000 0.00 0.00 33.75 3.67
293 314 6.786461 AGTAACTAGTAAGTCCTCCTTTGGTT 59.214 38.462 0.00 0.00 33.75 3.67
294 315 5.741962 ACTAGTAAGTCCTCCTTTGGTTC 57.258 43.478 0.00 0.00 34.46 3.62
295 316 5.152934 ACTAGTAAGTCCTCCTTTGGTTCA 58.847 41.667 0.00 0.00 34.46 3.18
296 317 5.785940 ACTAGTAAGTCCTCCTTTGGTTCAT 59.214 40.000 0.00 0.00 34.46 2.57
297 318 6.958192 ACTAGTAAGTCCTCCTTTGGTTCATA 59.042 38.462 0.00 0.00 34.46 2.15
298 319 6.301169 AGTAAGTCCTCCTTTGGTTCATAG 57.699 41.667 0.00 0.00 34.46 2.23
299 320 4.576330 AAGTCCTCCTTTGGTTCATAGG 57.424 45.455 0.00 0.00 34.61 2.57
300 321 3.803340 AGTCCTCCTTTGGTTCATAGGA 58.197 45.455 6.86 6.86 38.81 2.94
301 322 4.375313 AGTCCTCCTTTGGTTCATAGGAT 58.625 43.478 7.38 0.00 39.94 3.24
302 323 5.538877 AGTCCTCCTTTGGTTCATAGGATA 58.461 41.667 7.38 0.00 39.94 2.59
303 324 5.604650 AGTCCTCCTTTGGTTCATAGGATAG 59.395 44.000 7.38 3.92 39.94 2.08
304 325 4.907875 TCCTCCTTTGGTTCATAGGATAGG 59.092 45.833 7.38 6.86 39.94 2.57
305 326 4.042187 CCTCCTTTGGTTCATAGGATAGGG 59.958 50.000 7.38 3.28 39.94 3.53
306 327 4.903149 TCCTTTGGTTCATAGGATAGGGA 58.097 43.478 3.54 0.00 36.84 4.20
307 328 5.486332 TCCTTTGGTTCATAGGATAGGGAT 58.514 41.667 3.54 0.00 36.84 3.85
308 329 5.917087 TCCTTTGGTTCATAGGATAGGGATT 59.083 40.000 3.54 0.00 36.84 3.01
309 330 6.392842 TCCTTTGGTTCATAGGATAGGGATTT 59.607 38.462 3.54 0.00 36.84 2.17
310 331 7.069344 CCTTTGGTTCATAGGATAGGGATTTT 58.931 38.462 0.00 0.00 35.14 1.82
311 332 8.224720 CCTTTGGTTCATAGGATAGGGATTTTA 58.775 37.037 0.00 0.00 35.14 1.52
312 333 9.813826 CTTTGGTTCATAGGATAGGGATTTTAT 57.186 33.333 0.00 0.00 0.00 1.40
315 336 9.057911 TGGTTCATAGGATAGGGATTTTATAGG 57.942 37.037 0.00 0.00 0.00 2.57
316 337 9.280456 GGTTCATAGGATAGGGATTTTATAGGA 57.720 37.037 0.00 0.00 0.00 2.94
339 360 9.844257 AGGAATAGAAAAATCATAGGAAGTGAG 57.156 33.333 0.00 0.00 0.00 3.51
340 361 9.838339 GGAATAGAAAAATCATAGGAAGTGAGA 57.162 33.333 0.00 0.00 0.00 3.27
344 365 8.729805 AGAAAAATCATAGGAAGTGAGATGAC 57.270 34.615 0.00 0.00 31.41 3.06
345 366 8.324306 AGAAAAATCATAGGAAGTGAGATGACA 58.676 33.333 0.00 0.00 31.41 3.58
346 367 9.118300 GAAAAATCATAGGAAGTGAGATGACAT 57.882 33.333 0.00 0.00 31.41 3.06
347 368 8.447924 AAAATCATAGGAAGTGAGATGACATG 57.552 34.615 0.00 0.00 31.41 3.21
348 369 4.953667 TCATAGGAAGTGAGATGACATGC 58.046 43.478 0.00 0.00 0.00 4.06
349 370 4.406649 TCATAGGAAGTGAGATGACATGCA 59.593 41.667 0.00 0.00 0.00 3.96
350 371 3.928005 AGGAAGTGAGATGACATGCAT 57.072 42.857 0.00 0.00 40.77 3.96
364 385 6.688637 TGACATGCATCTCAATTCCTTTAG 57.311 37.500 1.73 0.00 0.00 1.85
365 386 6.417258 TGACATGCATCTCAATTCCTTTAGA 58.583 36.000 1.73 0.00 0.00 2.10
366 387 6.541278 TGACATGCATCTCAATTCCTTTAGAG 59.459 38.462 1.73 0.00 0.00 2.43
367 388 6.656902 ACATGCATCTCAATTCCTTTAGAGA 58.343 36.000 0.00 0.00 40.96 3.10
368 389 7.114754 ACATGCATCTCAATTCCTTTAGAGAA 58.885 34.615 0.00 0.00 40.19 2.87
369 390 7.613022 ACATGCATCTCAATTCCTTTAGAGAAA 59.387 33.333 0.00 0.00 40.19 2.52
370 391 7.621428 TGCATCTCAATTCCTTTAGAGAAAG 57.379 36.000 0.00 0.00 40.19 2.62
371 392 7.397221 TGCATCTCAATTCCTTTAGAGAAAGA 58.603 34.615 0.00 0.00 44.23 2.52
372 393 7.551974 TGCATCTCAATTCCTTTAGAGAAAGAG 59.448 37.037 0.00 0.00 44.23 2.85
373 394 7.768120 GCATCTCAATTCCTTTAGAGAAAGAGA 59.232 37.037 9.81 9.81 44.23 3.10
374 395 9.835389 CATCTCAATTCCTTTAGAGAAAGAGAT 57.165 33.333 12.33 12.33 44.23 2.75
387 408 7.765695 AGAGAAAGAGATTTTATTTGGTGCA 57.234 32.000 0.00 0.00 0.00 4.57
388 409 8.358582 AGAGAAAGAGATTTTATTTGGTGCAT 57.641 30.769 0.00 0.00 0.00 3.96
389 410 9.466497 AGAGAAAGAGATTTTATTTGGTGCATA 57.534 29.630 0.00 0.00 0.00 3.14
390 411 9.727627 GAGAAAGAGATTTTATTTGGTGCATAG 57.272 33.333 0.00 0.00 0.00 2.23
391 412 8.689972 AGAAAGAGATTTTATTTGGTGCATAGG 58.310 33.333 0.00 0.00 0.00 2.57
392 413 8.593945 AAAGAGATTTTATTTGGTGCATAGGA 57.406 30.769 0.00 0.00 0.00 2.94
393 414 8.773033 AAGAGATTTTATTTGGTGCATAGGAT 57.227 30.769 0.00 0.00 0.00 3.24
394 415 9.866655 AAGAGATTTTATTTGGTGCATAGGATA 57.133 29.630 0.00 0.00 0.00 2.59
395 416 9.512588 AGAGATTTTATTTGGTGCATAGGATAG 57.487 33.333 0.00 0.00 0.00 2.08
396 417 8.641498 AGATTTTATTTGGTGCATAGGATAGG 57.359 34.615 0.00 0.00 0.00 2.57
397 418 8.448008 AGATTTTATTTGGTGCATAGGATAGGA 58.552 33.333 0.00 0.00 0.00 2.94
398 419 9.077885 GATTTTATTTGGTGCATAGGATAGGAA 57.922 33.333 0.00 0.00 0.00 3.36
399 420 9.605951 ATTTTATTTGGTGCATAGGATAGGAAT 57.394 29.630 0.00 0.00 0.00 3.01
400 421 9.432982 TTTTATTTGGTGCATAGGATAGGAATT 57.567 29.630 0.00 0.00 0.00 2.17
401 422 9.432982 TTTATTTGGTGCATAGGATAGGAATTT 57.567 29.630 0.00 0.00 0.00 1.82
402 423 7.919385 ATTTGGTGCATAGGATAGGAATTTT 57.081 32.000 0.00 0.00 0.00 1.82
403 424 7.732222 TTTGGTGCATAGGATAGGAATTTTT 57.268 32.000 0.00 0.00 0.00 1.94
404 425 6.959639 TGGTGCATAGGATAGGAATTTTTC 57.040 37.500 0.00 0.00 0.00 2.29
419 440 6.765915 GAATTTTTCCATTGAGTCTAGGCT 57.234 37.500 0.00 0.00 0.00 4.58
420 441 7.865706 GAATTTTTCCATTGAGTCTAGGCTA 57.134 36.000 0.00 0.00 0.00 3.93
421 442 8.281212 GAATTTTTCCATTGAGTCTAGGCTAA 57.719 34.615 0.00 0.00 0.00 3.09
422 443 8.829373 AATTTTTCCATTGAGTCTAGGCTAAT 57.171 30.769 0.00 0.00 0.00 1.73
423 444 7.630242 TTTTTCCATTGAGTCTAGGCTAATG 57.370 36.000 0.00 8.01 0.00 1.90
424 445 5.957771 TTCCATTGAGTCTAGGCTAATGT 57.042 39.130 17.62 0.00 0.00 2.71
425 446 5.957771 TCCATTGAGTCTAGGCTAATGTT 57.042 39.130 17.62 0.00 0.00 2.71
426 447 6.313519 TCCATTGAGTCTAGGCTAATGTTT 57.686 37.500 17.62 0.00 0.00 2.83
427 448 6.721318 TCCATTGAGTCTAGGCTAATGTTTT 58.279 36.000 17.62 0.00 0.00 2.43
428 449 7.175104 TCCATTGAGTCTAGGCTAATGTTTTT 58.825 34.615 17.62 0.00 0.00 1.94
461 482 9.525409 CAAAATGTGAAGAATTGATTCCTATCC 57.475 33.333 0.27 0.00 37.51 2.59
462 483 9.484806 AAAATGTGAAGAATTGATTCCTATCCT 57.515 29.630 0.27 0.00 37.51 3.24
464 485 9.566432 AATGTGAAGAATTGATTCCTATCCTAC 57.434 33.333 0.27 0.00 37.51 3.18
465 486 8.089625 TGTGAAGAATTGATTCCTATCCTACA 57.910 34.615 0.27 0.00 37.51 2.74
466 487 8.717717 TGTGAAGAATTGATTCCTATCCTACAT 58.282 33.333 0.27 0.00 37.51 2.29
469 490 9.883142 GAAGAATTGATTCCTATCCTACATAGG 57.117 37.037 0.00 0.00 41.90 2.57
470 491 9.621239 AAGAATTGATTCCTATCCTACATAGGA 57.379 33.333 10.09 10.09 46.07 2.94
504 525 9.053472 TCCATTCCTATAAACTAAAGGACTTCA 57.947 33.333 0.00 0.00 39.13 3.02
505 526 9.681062 CCATTCCTATAAACTAAAGGACTTCAA 57.319 33.333 0.00 0.00 39.13 2.69
508 529 9.734984 TTCCTATAAACTAAAGGACTTCAAAGG 57.265 33.333 0.00 0.00 39.13 3.11
509 530 9.108111 TCCTATAAACTAAAGGACTTCAAAGGA 57.892 33.333 0.00 0.00 34.46 3.36
510 531 9.734984 CCTATAAACTAAAGGACTTCAAAGGAA 57.265 33.333 0.00 0.00 31.64 3.36
516 537 9.817809 AACTAAAGGACTTCAAAGGAATTTTTC 57.182 29.630 0.00 0.00 31.34 2.29
532 553 8.201554 GGAATTTTTCCTTTGCAAATCCTATC 57.798 34.615 13.23 4.40 46.57 2.08
533 554 7.823799 GGAATTTTTCCTTTGCAAATCCTATCA 59.176 33.333 13.23 0.00 46.57 2.15
534 555 9.387257 GAATTTTTCCTTTGCAAATCCTATCAT 57.613 29.630 13.23 0.00 0.00 2.45
540 561 9.730705 TTCCTTTGCAAATCCTATCATATAGAG 57.269 33.333 13.23 0.00 0.00 2.43
541 562 8.884323 TCCTTTGCAAATCCTATCATATAGAGT 58.116 33.333 13.23 0.00 0.00 3.24
542 563 9.512588 CCTTTGCAAATCCTATCATATAGAGTT 57.487 33.333 13.23 0.00 0.00 3.01
544 565 9.507329 TTTGCAAATCCTATCATATAGAGTTCC 57.493 33.333 8.05 0.00 0.00 3.62
545 566 7.323420 TGCAAATCCTATCATATAGAGTTCCG 58.677 38.462 0.00 0.00 0.00 4.30
546 567 7.178451 TGCAAATCCTATCATATAGAGTTCCGA 59.822 37.037 0.00 0.00 0.00 4.55
547 568 7.489757 GCAAATCCTATCATATAGAGTTCCGAC 59.510 40.741 0.00 0.00 0.00 4.79
548 569 8.523658 CAAATCCTATCATATAGAGTTCCGACA 58.476 37.037 0.00 0.00 0.00 4.35
549 570 8.651589 AATCCTATCATATAGAGTTCCGACAA 57.348 34.615 0.00 0.00 0.00 3.18
550 571 8.651589 ATCCTATCATATAGAGTTCCGACAAA 57.348 34.615 0.00 0.00 0.00 2.83
551 572 8.473358 TCCTATCATATAGAGTTCCGACAAAA 57.527 34.615 0.00 0.00 0.00 2.44
552 573 9.090103 TCCTATCATATAGAGTTCCGACAAAAT 57.910 33.333 0.00 0.00 0.00 1.82
553 574 9.712305 CCTATCATATAGAGTTCCGACAAAATT 57.288 33.333 0.00 0.00 0.00 1.82
555 576 8.608844 ATCATATAGAGTTCCGACAAAATTCC 57.391 34.615 0.00 0.00 0.00 3.01
556 577 7.792032 TCATATAGAGTTCCGACAAAATTCCT 58.208 34.615 0.00 0.00 0.00 3.36
557 578 7.710907 TCATATAGAGTTCCGACAAAATTCCTG 59.289 37.037 0.00 0.00 0.00 3.86
558 579 2.814336 AGAGTTCCGACAAAATTCCTGC 59.186 45.455 0.00 0.00 0.00 4.85
559 580 2.552315 GAGTTCCGACAAAATTCCTGCA 59.448 45.455 0.00 0.00 0.00 4.41
560 581 2.955660 AGTTCCGACAAAATTCCTGCAA 59.044 40.909 0.00 0.00 0.00 4.08
561 582 3.383185 AGTTCCGACAAAATTCCTGCAAA 59.617 39.130 0.00 0.00 0.00 3.68
562 583 3.363341 TCCGACAAAATTCCTGCAAAC 57.637 42.857 0.00 0.00 0.00 2.93
563 584 2.035321 TCCGACAAAATTCCTGCAAACC 59.965 45.455 0.00 0.00 0.00 3.27
564 585 2.223923 CCGACAAAATTCCTGCAAACCA 60.224 45.455 0.00 0.00 0.00 3.67
565 586 3.452474 CGACAAAATTCCTGCAAACCAA 58.548 40.909 0.00 0.00 0.00 3.67
566 587 3.868077 CGACAAAATTCCTGCAAACCAAA 59.132 39.130 0.00 0.00 0.00 3.28
567 588 4.025813 CGACAAAATTCCTGCAAACCAAAG 60.026 41.667 0.00 0.00 0.00 2.77
568 589 4.198530 ACAAAATTCCTGCAAACCAAAGG 58.801 39.130 0.00 0.00 0.00 3.11
569 590 4.080638 ACAAAATTCCTGCAAACCAAAGGA 60.081 37.500 0.00 0.00 38.35 3.36
570 591 4.341366 AAATTCCTGCAAACCAAAGGAG 57.659 40.909 0.00 0.00 41.08 3.69
571 592 1.703411 TTCCTGCAAACCAAAGGAGG 58.297 50.000 0.00 0.00 43.90 4.30
572 593 0.827507 TCCTGCAAACCAAAGGAGGC 60.828 55.000 0.00 0.00 42.45 4.70
573 594 1.667722 CTGCAAACCAAAGGAGGCC 59.332 57.895 0.00 0.00 0.00 5.19
713 737 8.981724 TGATCATGACAAGTTGTTACTACTAC 57.018 34.615 10.45 0.00 33.17 2.73
718 742 7.956420 TGACAAGTTGTTACTACTACCAATG 57.044 36.000 10.45 0.00 33.17 2.82
730 754 4.388577 ACTACCAATGGCTTCCTCTTTT 57.611 40.909 0.00 0.00 0.00 2.27
791 815 8.333235 ACAATCTTACTAATCAAATGGTACCCA 58.667 33.333 10.07 0.00 38.19 4.51
840 864 4.095782 CGTTGACAAGGTTCAAAGAAAGGA 59.904 41.667 0.00 0.00 37.20 3.36
857 881 1.097547 GGATGAGCCATTCACCGTGG 61.098 60.000 0.00 0.00 38.99 4.94
880 904 5.238214 GGATGCTAGAAATGTGAGATCAACC 59.762 44.000 0.00 0.00 0.00 3.77
897 921 0.394762 ACCGAGAATGCATGCACCAT 60.395 50.000 25.37 12.66 0.00 3.55
1004 1028 5.739752 TGTTCAGTCAGTTGTTTCATGAG 57.260 39.130 0.00 0.00 0.00 2.90
1030 1054 4.253685 CCAATTTACTTCCTCTCGCAGAA 58.746 43.478 0.00 0.00 34.09 3.02
1149 1173 4.815973 ACCCCCGGCCTCTGCATA 62.816 66.667 0.00 0.00 40.13 3.14
1238 1262 2.277084 CTAAAACCGCCGTCTAAGCAT 58.723 47.619 0.00 0.00 0.00 3.79
1270 1294 0.394565 GATGAAGGGGCGCAGATAGT 59.605 55.000 10.83 0.00 0.00 2.12
1305 1329 1.538047 AACAGACATCGCAGCCAAAT 58.462 45.000 0.00 0.00 0.00 2.32
1419 1443 1.339055 CCACCGCTCCATCTTCAGAAA 60.339 52.381 0.00 0.00 0.00 2.52
1420 1444 1.734465 CACCGCTCCATCTTCAGAAAC 59.266 52.381 0.00 0.00 0.00 2.78
1458 1482 1.676746 TGCTCGGTCTAGCTATCGTT 58.323 50.000 0.00 0.00 43.19 3.85
1565 1589 1.200760 TGCTGCCAGGTATCACCAGT 61.201 55.000 0.00 0.00 41.95 4.00
1593 1617 4.077822 CAGCTTGAAGTCCTTGGAAGATT 58.922 43.478 0.00 0.00 0.00 2.40
1631 1656 1.247567 CCGACCAGGCATGAAAAAGT 58.752 50.000 0.00 0.00 0.00 2.66
1642 1667 3.568538 CATGAAAAAGTGTAGCACCTGC 58.431 45.455 0.00 0.00 42.49 4.85
1753 1778 2.393271 ACGATGCTCCCAAAAGAGAG 57.607 50.000 0.00 0.00 35.82 3.20
1847 1872 2.421424 GGGTCGACAGTAGTTACACGAT 59.579 50.000 18.91 0.00 33.87 3.73
1852 1877 4.035684 CGACAGTAGTTACACGATGATGG 58.964 47.826 0.00 0.00 0.00 3.51
1873 1898 0.609151 TCCATCAAGGTAACGGCGAA 59.391 50.000 16.62 0.00 46.39 4.70
1876 1901 2.422127 CCATCAAGGTAACGGCGAAAAT 59.578 45.455 16.62 0.00 46.39 1.82
1879 1904 1.199097 CAAGGTAACGGCGAAAATGCT 59.801 47.619 16.62 0.00 46.39 3.79
1890 1915 1.024271 GAAAATGCTGCCATCGCCTA 58.976 50.000 0.00 0.00 0.00 3.93
2148 2173 0.543277 GCACCACCAGATCCAGATCA 59.457 55.000 10.17 0.00 40.22 2.92
2309 2335 4.749310 CGCCAGAGAAGCCGCAGT 62.749 66.667 0.00 0.00 0.00 4.40
2808 2834 0.768622 AGAGATCGACGAGGGAGGAT 59.231 55.000 3.01 0.00 0.00 3.24
2817 2843 3.758133 GAGGGAGGATGAGGGGCGA 62.758 68.421 0.00 0.00 0.00 5.54
2871 2897 4.011517 GGCTCGGGGGTCGTTTGA 62.012 66.667 0.00 0.00 40.32 2.69
2872 2898 2.267961 GCTCGGGGGTCGTTTGAT 59.732 61.111 0.00 0.00 40.32 2.57
2873 2899 1.376812 GCTCGGGGGTCGTTTGATT 60.377 57.895 0.00 0.00 40.32 2.57
2874 2900 1.366854 GCTCGGGGGTCGTTTGATTC 61.367 60.000 0.00 0.00 40.32 2.52
2875 2901 0.249398 CTCGGGGGTCGTTTGATTCT 59.751 55.000 0.00 0.00 40.32 2.40
2876 2902 0.036765 TCGGGGGTCGTTTGATTCTG 60.037 55.000 0.00 0.00 40.32 3.02
2877 2903 0.321298 CGGGGGTCGTTTGATTCTGT 60.321 55.000 0.00 0.00 0.00 3.41
2878 2904 1.165270 GGGGGTCGTTTGATTCTGTG 58.835 55.000 0.00 0.00 0.00 3.66
2879 2905 0.521735 GGGGTCGTTTGATTCTGTGC 59.478 55.000 0.00 0.00 0.00 4.57
2880 2906 1.234821 GGGTCGTTTGATTCTGTGCA 58.765 50.000 0.00 0.00 0.00 4.57
2881 2907 1.812571 GGGTCGTTTGATTCTGTGCAT 59.187 47.619 0.00 0.00 0.00 3.96
2882 2908 2.414559 GGGTCGTTTGATTCTGTGCATG 60.415 50.000 0.00 0.00 0.00 4.06
2883 2909 2.414559 GGTCGTTTGATTCTGTGCATGG 60.415 50.000 0.00 0.00 0.00 3.66
2884 2910 1.811965 TCGTTTGATTCTGTGCATGGG 59.188 47.619 0.00 0.00 0.00 4.00
2885 2911 1.733389 CGTTTGATTCTGTGCATGGGC 60.733 52.381 0.00 0.00 41.68 5.36
2886 2912 1.547372 GTTTGATTCTGTGCATGGGCT 59.453 47.619 0.00 0.00 41.91 5.19
2887 2913 2.754552 GTTTGATTCTGTGCATGGGCTA 59.245 45.455 0.00 0.00 41.91 3.93
2888 2914 2.042686 TGATTCTGTGCATGGGCTAC 57.957 50.000 0.00 0.00 41.91 3.58
2889 2915 1.281577 TGATTCTGTGCATGGGCTACA 59.718 47.619 0.00 0.00 41.91 2.74
2890 2916 2.290832 TGATTCTGTGCATGGGCTACAA 60.291 45.455 0.00 0.00 41.91 2.41
2891 2917 1.825090 TTCTGTGCATGGGCTACAAG 58.175 50.000 0.00 0.00 41.91 3.16
2892 2918 0.692476 TCTGTGCATGGGCTACAAGT 59.308 50.000 0.00 0.00 41.91 3.16
2950 2976 5.940470 AGTCAGGTGTATCCAAAGATTCAAC 59.060 40.000 0.00 0.00 37.66 3.18
2956 2982 6.592607 GGTGTATCCAAAGATTCAACGTAGAA 59.407 38.462 0.00 0.00 32.32 2.10
2958 2984 6.309494 TGTATCCAAAGATTCAACGTAGAACG 59.691 38.462 0.00 0.00 39.69 3.95
2974 3000 5.050567 CGTAGAACGCCTTGTAGTTTTTCTT 60.051 40.000 0.00 0.00 33.65 2.52
3068 3094 6.032956 ACGATCTTGTGGTGTCTGTTTATA 57.967 37.500 0.00 0.00 0.00 0.98
3167 3193 7.765695 TGGCAGAAAAAGAATCTAGAAATGT 57.234 32.000 0.00 0.00 0.00 2.71
3441 3799 7.168637 CCATACAATCTGCATCTAAAACATTGC 59.831 37.037 0.00 0.00 35.67 3.56
3508 3867 3.306019 CCACATTTGCAGAAACCCCTTAC 60.306 47.826 0.00 0.00 0.00 2.34
3525 3884 1.015609 TACTCCCCCAGACCATCTCA 58.984 55.000 0.00 0.00 0.00 3.27
3527 3886 1.055040 CTCCCCCAGACCATCTCATC 58.945 60.000 0.00 0.00 0.00 2.92
3528 3887 0.644380 TCCCCCAGACCATCTCATCT 59.356 55.000 0.00 0.00 0.00 2.90
3529 3888 1.055040 CCCCCAGACCATCTCATCTC 58.945 60.000 0.00 0.00 0.00 2.75
3631 4038 9.066892 GCATGTATTAGTCTATTTTGGATCCAA 57.933 33.333 23.63 23.63 0.00 3.53
3937 4347 4.938226 GTCCATATCCTACTATTTGCAGCC 59.062 45.833 0.00 0.00 0.00 4.85
3943 4353 2.224281 CCTACTATTTGCAGCCGGATGA 60.224 50.000 26.87 2.03 0.00 2.92
3984 4394 4.503007 TCGCATGAGCTCTTTTTATACGTC 59.497 41.667 16.19 0.00 39.10 4.34
4049 4529 0.387622 GCATTCTTCTTGCTTGCGCA 60.388 50.000 5.66 5.66 46.24 6.09
4227 4797 5.526846 GGAAGATCCTGAAAATGAGCTAGTG 59.473 44.000 0.00 0.00 32.53 2.74
4229 4799 2.991250 TCCTGAAAATGAGCTAGTGCC 58.009 47.619 0.00 0.00 40.80 5.01
4236 4806 1.893544 ATGAGCTAGTGCCATGATGC 58.106 50.000 0.00 0.00 40.80 3.91
4284 4854 4.685169 TTCTTTGCTTATTTCTGAGGCG 57.315 40.909 0.00 0.00 0.00 5.52
4365 4990 3.371285 TGTCTTGAGATACTCGAGTGTCG 59.629 47.826 29.29 18.65 41.44 4.35
4483 5108 2.543012 CGAGCTGTATGAAGCATGGAAG 59.457 50.000 0.00 0.00 46.08 3.46
4486 5111 2.621998 GCTGTATGAAGCATGGAAGCAT 59.378 45.455 0.00 0.00 43.01 3.79
4487 5112 3.817084 GCTGTATGAAGCATGGAAGCATA 59.183 43.478 0.00 0.00 43.01 3.14
4488 5113 4.458295 GCTGTATGAAGCATGGAAGCATAT 59.542 41.667 0.00 0.00 43.01 1.78
4525 5282 3.484524 CAGGACACTGCAATGCAAC 57.515 52.632 9.92 1.28 38.41 4.17
4526 5283 0.956633 CAGGACACTGCAATGCAACT 59.043 50.000 9.92 0.00 38.41 3.16
4592 5349 2.112190 AGAATCTCCGGAGAAAGGTCC 58.888 52.381 36.58 20.44 41.36 4.46
4597 5354 2.646175 CCGGAGAAAGGTCCTCGCA 61.646 63.158 0.00 0.00 34.00 5.10
4651 5408 4.941263 TGCAGTTATCACTTGGGATTGTAC 59.059 41.667 0.00 0.00 0.00 2.90
4652 5409 5.186198 GCAGTTATCACTTGGGATTGTACT 58.814 41.667 0.00 0.00 0.00 2.73
4653 5410 6.070481 TGCAGTTATCACTTGGGATTGTACTA 60.070 38.462 0.00 0.00 0.00 1.82
4654 5411 6.258068 GCAGTTATCACTTGGGATTGTACTAC 59.742 42.308 0.00 0.00 0.00 2.73
4671 5428 3.177228 ACTACCAAGGAAGAGCTGTCAT 58.823 45.455 0.00 0.00 0.00 3.06
4685 5442 2.242043 CTGTCATTTGGCTGGAACCTT 58.758 47.619 0.00 0.00 0.00 3.50
4721 5509 6.567687 TGTTTTGTGAAGACAAGACTTTGA 57.432 33.333 9.26 0.00 44.05 2.69
4769 5558 5.810074 GGTGTTATGTGCCATGAAATTTACC 59.190 40.000 0.00 0.00 0.00 2.85
4770 5559 6.393990 GTGTTATGTGCCATGAAATTTACCA 58.606 36.000 0.00 0.00 0.00 3.25
4772 5561 3.567576 TGTGCCATGAAATTTACCACG 57.432 42.857 0.00 0.00 0.00 4.94
4773 5562 2.887783 TGTGCCATGAAATTTACCACGT 59.112 40.909 0.00 0.00 0.00 4.49
4777 5566 3.672241 GCCATGAAATTTACCACGTCACC 60.672 47.826 0.00 0.00 0.00 4.02
4778 5567 3.425625 CCATGAAATTTACCACGTCACCG 60.426 47.826 0.00 0.00 40.83 4.94
4808 5599 3.841643 TCCTAAAGTACTTTTCTCGCGG 58.158 45.455 25.07 15.16 34.23 6.46
4851 5647 9.666626 GCATATAATCCACATATCGTAGTAGTC 57.333 37.037 0.00 0.00 0.00 2.59
4867 5663 6.693545 CGTAGTAGTCATTGATCAGAGGTTTC 59.306 42.308 0.00 0.00 0.00 2.78
4869 5665 5.723887 AGTAGTCATTGATCAGAGGTTTCCT 59.276 40.000 0.00 0.00 36.03 3.36
4870 5666 5.511386 AGTCATTGATCAGAGGTTTCCTT 57.489 39.130 0.00 0.00 31.76 3.36
4871 5667 6.627087 AGTCATTGATCAGAGGTTTCCTTA 57.373 37.500 0.00 0.00 31.76 2.69
4947 5743 2.409835 GCGCGTGCAAAAAGTGTAG 58.590 52.632 17.66 0.00 42.15 2.74
4975 5771 1.296727 GTTACGCCTGGCTATTGTCC 58.703 55.000 17.92 0.00 0.00 4.02
4979 5775 1.557832 ACGCCTGGCTATTGTCCTAAA 59.442 47.619 17.92 0.00 0.00 1.85
4983 5779 3.378427 GCCTGGCTATTGTCCTAAACTTG 59.622 47.826 12.43 0.00 0.00 3.16
4997 5796 1.640210 AACTTGTTCACGTGTGCGCA 61.640 50.000 16.51 5.66 42.83 6.09
5044 5843 0.236711 CAAAGCAGCTGAACCGACAG 59.763 55.000 20.43 0.00 40.43 3.51
5053 5852 1.873591 CTGAACCGACAGGAAACTTGG 59.126 52.381 0.00 0.00 40.21 3.61
5054 5853 1.487142 TGAACCGACAGGAAACTTGGA 59.513 47.619 0.00 0.00 40.21 3.53
5055 5854 2.143925 GAACCGACAGGAAACTTGGAG 58.856 52.381 0.00 0.00 40.21 3.86
5056 5855 1.420430 ACCGACAGGAAACTTGGAGA 58.580 50.000 0.00 0.00 40.21 3.71
5057 5856 1.070289 ACCGACAGGAAACTTGGAGAC 59.930 52.381 0.00 0.00 40.21 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 9.394767 TGTGCACATTAATACATGATCTACTTT 57.605 29.630 17.42 0.00 0.00 2.66
269 290 6.602410 ACCAAAGGAGGACTTACTAGTTAC 57.398 41.667 0.00 0.00 38.85 2.50
271 292 5.605488 TGAACCAAAGGAGGACTTACTAGTT 59.395 40.000 0.00 0.00 38.85 2.24
273 294 5.740290 TGAACCAAAGGAGGACTTACTAG 57.260 43.478 0.00 0.00 38.85 2.57
274 295 6.383147 CCTATGAACCAAAGGAGGACTTACTA 59.617 42.308 0.00 0.00 38.85 1.82
275 296 5.189934 CCTATGAACCAAAGGAGGACTTACT 59.810 44.000 0.00 0.00 38.85 2.24
276 297 5.189145 TCCTATGAACCAAAGGAGGACTTAC 59.811 44.000 0.00 0.00 38.85 2.34
277 298 5.347124 TCCTATGAACCAAAGGAGGACTTA 58.653 41.667 0.00 0.00 38.85 2.24
278 299 4.175962 TCCTATGAACCAAAGGAGGACTT 58.824 43.478 0.00 0.00 42.52 3.01
279 300 3.803340 TCCTATGAACCAAAGGAGGACT 58.197 45.455 0.00 0.00 34.46 3.85
280 301 4.779993 ATCCTATGAACCAAAGGAGGAC 57.220 45.455 0.00 0.00 42.53 3.85
281 302 4.907875 CCTATCCTATGAACCAAAGGAGGA 59.092 45.833 0.00 0.00 42.53 3.71
282 303 4.042187 CCCTATCCTATGAACCAAAGGAGG 59.958 50.000 0.00 0.00 42.53 4.30
283 304 4.907875 TCCCTATCCTATGAACCAAAGGAG 59.092 45.833 0.00 0.00 42.53 3.69
284 305 4.903149 TCCCTATCCTATGAACCAAAGGA 58.097 43.478 0.00 0.00 43.38 3.36
285 306 5.850046 ATCCCTATCCTATGAACCAAAGG 57.150 43.478 0.00 0.00 0.00 3.11
286 307 9.813826 ATAAAATCCCTATCCTATGAACCAAAG 57.186 33.333 0.00 0.00 0.00 2.77
289 310 9.057911 CCTATAAAATCCCTATCCTATGAACCA 57.942 37.037 0.00 0.00 0.00 3.67
290 311 9.280456 TCCTATAAAATCCCTATCCTATGAACC 57.720 37.037 0.00 0.00 0.00 3.62
313 334 9.844257 CTCACTTCCTATGATTTTTCTATTCCT 57.156 33.333 0.00 0.00 0.00 3.36
314 335 9.838339 TCTCACTTCCTATGATTTTTCTATTCC 57.162 33.333 0.00 0.00 0.00 3.01
318 339 9.823647 GTCATCTCACTTCCTATGATTTTTCTA 57.176 33.333 0.00 0.00 31.49 2.10
319 340 8.324306 TGTCATCTCACTTCCTATGATTTTTCT 58.676 33.333 0.00 0.00 31.49 2.52
320 341 8.498054 TGTCATCTCACTTCCTATGATTTTTC 57.502 34.615 0.00 0.00 31.49 2.29
321 342 8.900781 CATGTCATCTCACTTCCTATGATTTTT 58.099 33.333 0.00 0.00 31.49 1.94
322 343 7.013083 GCATGTCATCTCACTTCCTATGATTTT 59.987 37.037 0.00 0.00 31.49 1.82
323 344 6.485984 GCATGTCATCTCACTTCCTATGATTT 59.514 38.462 0.00 0.00 31.49 2.17
324 345 5.996513 GCATGTCATCTCACTTCCTATGATT 59.003 40.000 0.00 0.00 31.49 2.57
325 346 5.071384 TGCATGTCATCTCACTTCCTATGAT 59.929 40.000 0.00 0.00 31.49 2.45
326 347 4.406649 TGCATGTCATCTCACTTCCTATGA 59.593 41.667 0.00 0.00 0.00 2.15
327 348 4.700700 TGCATGTCATCTCACTTCCTATG 58.299 43.478 0.00 0.00 0.00 2.23
328 349 5.549347 GATGCATGTCATCTCACTTCCTAT 58.451 41.667 2.46 0.00 46.29 2.57
329 350 4.953667 GATGCATGTCATCTCACTTCCTA 58.046 43.478 2.46 0.00 46.29 2.94
330 351 3.806380 GATGCATGTCATCTCACTTCCT 58.194 45.455 2.46 0.00 46.29 3.36
340 361 7.058525 TCTAAAGGAATTGAGATGCATGTCAT 58.941 34.615 25.41 13.07 38.32 3.06
341 362 6.417258 TCTAAAGGAATTGAGATGCATGTCA 58.583 36.000 21.70 21.70 0.00 3.58
342 363 6.765036 TCTCTAAAGGAATTGAGATGCATGTC 59.235 38.462 16.63 16.63 31.53 3.06
343 364 6.656902 TCTCTAAAGGAATTGAGATGCATGT 58.343 36.000 2.46 0.00 31.53 3.21
344 365 7.563888 TTCTCTAAAGGAATTGAGATGCATG 57.436 36.000 2.46 0.00 35.78 4.06
345 366 8.051535 TCTTTCTCTAAAGGAATTGAGATGCAT 58.948 33.333 0.00 0.00 42.09 3.96
346 367 7.397221 TCTTTCTCTAAAGGAATTGAGATGCA 58.603 34.615 0.00 0.00 42.09 3.96
347 368 7.768120 TCTCTTTCTCTAAAGGAATTGAGATGC 59.232 37.037 0.00 0.00 42.09 3.91
348 369 9.835389 ATCTCTTTCTCTAAAGGAATTGAGATG 57.165 33.333 14.88 0.00 42.09 2.90
361 382 9.295825 TGCACCAAATAAAATCTCTTTCTCTAA 57.704 29.630 0.00 0.00 0.00 2.10
362 383 8.862325 TGCACCAAATAAAATCTCTTTCTCTA 57.138 30.769 0.00 0.00 0.00 2.43
363 384 7.765695 TGCACCAAATAAAATCTCTTTCTCT 57.234 32.000 0.00 0.00 0.00 3.10
364 385 9.727627 CTATGCACCAAATAAAATCTCTTTCTC 57.272 33.333 0.00 0.00 0.00 2.87
365 386 8.689972 CCTATGCACCAAATAAAATCTCTTTCT 58.310 33.333 0.00 0.00 0.00 2.52
366 387 8.686334 TCCTATGCACCAAATAAAATCTCTTTC 58.314 33.333 0.00 0.00 0.00 2.62
367 388 8.593945 TCCTATGCACCAAATAAAATCTCTTT 57.406 30.769 0.00 0.00 0.00 2.52
368 389 8.773033 ATCCTATGCACCAAATAAAATCTCTT 57.227 30.769 0.00 0.00 0.00 2.85
369 390 9.512588 CTATCCTATGCACCAAATAAAATCTCT 57.487 33.333 0.00 0.00 0.00 3.10
370 391 8.734386 CCTATCCTATGCACCAAATAAAATCTC 58.266 37.037 0.00 0.00 0.00 2.75
371 392 8.448008 TCCTATCCTATGCACCAAATAAAATCT 58.552 33.333 0.00 0.00 0.00 2.40
372 393 8.635765 TCCTATCCTATGCACCAAATAAAATC 57.364 34.615 0.00 0.00 0.00 2.17
373 394 9.605951 ATTCCTATCCTATGCACCAAATAAAAT 57.394 29.630 0.00 0.00 0.00 1.82
374 395 9.432982 AATTCCTATCCTATGCACCAAATAAAA 57.567 29.630 0.00 0.00 0.00 1.52
375 396 9.432982 AAATTCCTATCCTATGCACCAAATAAA 57.567 29.630 0.00 0.00 0.00 1.40
376 397 9.432982 AAAATTCCTATCCTATGCACCAAATAA 57.567 29.630 0.00 0.00 0.00 1.40
377 398 9.432982 AAAAATTCCTATCCTATGCACCAAATA 57.567 29.630 0.00 0.00 0.00 1.40
378 399 7.919385 AAAATTCCTATCCTATGCACCAAAT 57.081 32.000 0.00 0.00 0.00 2.32
379 400 7.147742 GGAAAAATTCCTATCCTATGCACCAAA 60.148 37.037 1.86 0.00 46.57 3.28
380 401 6.323739 GGAAAAATTCCTATCCTATGCACCAA 59.676 38.462 1.86 0.00 46.57 3.67
381 402 5.833131 GGAAAAATTCCTATCCTATGCACCA 59.167 40.000 1.86 0.00 46.57 4.17
382 403 6.332735 GGAAAAATTCCTATCCTATGCACC 57.667 41.667 1.86 0.00 46.57 5.01
396 417 6.765915 AGCCTAGACTCAATGGAAAAATTC 57.234 37.500 0.00 0.00 0.00 2.17
397 418 8.689972 CATTAGCCTAGACTCAATGGAAAAATT 58.310 33.333 0.00 0.00 0.00 1.82
398 419 7.836183 ACATTAGCCTAGACTCAATGGAAAAAT 59.164 33.333 0.00 0.00 32.20 1.82
399 420 7.175104 ACATTAGCCTAGACTCAATGGAAAAA 58.825 34.615 0.00 0.00 32.20 1.94
400 421 6.721318 ACATTAGCCTAGACTCAATGGAAAA 58.279 36.000 0.00 0.00 32.20 2.29
401 422 6.313519 ACATTAGCCTAGACTCAATGGAAA 57.686 37.500 0.00 0.00 32.20 3.13
402 423 5.957771 ACATTAGCCTAGACTCAATGGAA 57.042 39.130 0.00 0.00 32.20 3.53
403 424 5.957771 AACATTAGCCTAGACTCAATGGA 57.042 39.130 0.00 0.00 32.20 3.41
404 425 7.396540 AAAAACATTAGCCTAGACTCAATGG 57.603 36.000 0.00 0.00 32.20 3.16
435 456 9.525409 GGATAGGAATCAATTCTTCACATTTTG 57.475 33.333 2.96 0.00 37.00 2.44
436 457 9.484806 AGGATAGGAATCAATTCTTCACATTTT 57.515 29.630 2.96 0.00 37.00 1.82
438 459 9.566432 GTAGGATAGGAATCAATTCTTCACATT 57.434 33.333 2.96 0.00 37.00 2.71
439 460 8.717717 TGTAGGATAGGAATCAATTCTTCACAT 58.282 33.333 2.96 0.00 37.00 3.21
440 461 8.089625 TGTAGGATAGGAATCAATTCTTCACA 57.910 34.615 2.96 0.00 37.00 3.58
443 464 9.883142 CCTATGTAGGATAGGAATCAATTCTTC 57.117 37.037 0.00 0.00 46.63 2.87
478 499 9.053472 TGAAGTCCTTTAGTTTATAGGAATGGA 57.947 33.333 0.00 0.00 37.60 3.41
479 500 9.681062 TTGAAGTCCTTTAGTTTATAGGAATGG 57.319 33.333 0.00 0.00 37.60 3.16
482 503 9.734984 CCTTTGAAGTCCTTTAGTTTATAGGAA 57.265 33.333 0.00 0.00 37.60 3.36
483 504 9.108111 TCCTTTGAAGTCCTTTAGTTTATAGGA 57.892 33.333 0.00 0.00 34.19 2.94
484 505 9.734984 TTCCTTTGAAGTCCTTTAGTTTATAGG 57.265 33.333 0.00 0.00 30.84 2.57
490 511 9.817809 GAAAAATTCCTTTGAAGTCCTTTAGTT 57.182 29.630 0.00 0.00 33.05 2.24
491 512 8.421784 GGAAAAATTCCTTTGAAGTCCTTTAGT 58.578 33.333 1.86 0.00 46.57 2.24
492 513 8.818141 GGAAAAATTCCTTTGAAGTCCTTTAG 57.182 34.615 1.86 0.00 46.57 1.85
508 529 8.776376 TGATAGGATTTGCAAAGGAAAAATTC 57.224 30.769 18.19 7.27 0.00 2.17
514 535 9.730705 CTCTATATGATAGGATTTGCAAAGGAA 57.269 33.333 18.19 3.55 0.00 3.36
515 536 8.884323 ACTCTATATGATAGGATTTGCAAAGGA 58.116 33.333 18.19 2.96 0.00 3.36
516 537 9.512588 AACTCTATATGATAGGATTTGCAAAGG 57.487 33.333 18.19 0.00 0.00 3.11
518 539 9.507329 GGAACTCTATATGATAGGATTTGCAAA 57.493 33.333 15.44 15.44 0.00 3.68
519 540 7.819415 CGGAACTCTATATGATAGGATTTGCAA 59.181 37.037 0.00 0.00 0.00 4.08
520 541 7.178451 TCGGAACTCTATATGATAGGATTTGCA 59.822 37.037 0.00 0.00 0.00 4.08
521 542 7.489757 GTCGGAACTCTATATGATAGGATTTGC 59.510 40.741 0.00 0.00 0.00 3.68
522 543 8.523658 TGTCGGAACTCTATATGATAGGATTTG 58.476 37.037 0.00 0.00 0.00 2.32
523 544 8.651589 TGTCGGAACTCTATATGATAGGATTT 57.348 34.615 0.00 0.00 0.00 2.17
524 545 8.651589 TTGTCGGAACTCTATATGATAGGATT 57.348 34.615 0.00 0.00 0.00 3.01
525 546 8.651589 TTTGTCGGAACTCTATATGATAGGAT 57.348 34.615 0.00 0.00 0.00 3.24
526 547 8.473358 TTTTGTCGGAACTCTATATGATAGGA 57.527 34.615 0.00 0.00 0.00 2.94
527 548 9.712305 AATTTTGTCGGAACTCTATATGATAGG 57.288 33.333 0.00 0.00 0.00 2.57
529 550 9.706691 GGAATTTTGTCGGAACTCTATATGATA 57.293 33.333 0.00 0.00 0.00 2.15
530 551 8.432805 AGGAATTTTGTCGGAACTCTATATGAT 58.567 33.333 0.00 0.00 0.00 2.45
531 552 7.710907 CAGGAATTTTGTCGGAACTCTATATGA 59.289 37.037 0.00 0.00 0.00 2.15
532 553 7.519008 GCAGGAATTTTGTCGGAACTCTATATG 60.519 40.741 0.00 0.00 0.00 1.78
533 554 6.483640 GCAGGAATTTTGTCGGAACTCTATAT 59.516 38.462 0.00 0.00 0.00 0.86
534 555 5.815740 GCAGGAATTTTGTCGGAACTCTATA 59.184 40.000 0.00 0.00 0.00 1.31
535 556 4.636206 GCAGGAATTTTGTCGGAACTCTAT 59.364 41.667 0.00 0.00 0.00 1.98
536 557 4.000988 GCAGGAATTTTGTCGGAACTCTA 58.999 43.478 0.00 0.00 0.00 2.43
537 558 2.814336 GCAGGAATTTTGTCGGAACTCT 59.186 45.455 0.00 0.00 0.00 3.24
538 559 2.552315 TGCAGGAATTTTGTCGGAACTC 59.448 45.455 0.00 0.00 0.00 3.01
539 560 2.582052 TGCAGGAATTTTGTCGGAACT 58.418 42.857 0.00 0.00 0.00 3.01
540 561 3.363341 TTGCAGGAATTTTGTCGGAAC 57.637 42.857 0.00 0.00 0.00 3.62
541 562 3.491792 GGTTTGCAGGAATTTTGTCGGAA 60.492 43.478 0.00 0.00 0.00 4.30
542 563 2.035321 GGTTTGCAGGAATTTTGTCGGA 59.965 45.455 0.00 0.00 0.00 4.55
543 564 2.223923 TGGTTTGCAGGAATTTTGTCGG 60.224 45.455 0.00 0.00 0.00 4.79
544 565 3.090952 TGGTTTGCAGGAATTTTGTCG 57.909 42.857 0.00 0.00 0.00 4.35
545 566 4.273235 CCTTTGGTTTGCAGGAATTTTGTC 59.727 41.667 0.00 0.00 0.00 3.18
546 567 4.080638 TCCTTTGGTTTGCAGGAATTTTGT 60.081 37.500 0.00 0.00 33.53 2.83
547 568 4.450053 TCCTTTGGTTTGCAGGAATTTTG 58.550 39.130 0.00 0.00 33.53 2.44
548 569 4.444733 CCTCCTTTGGTTTGCAGGAATTTT 60.445 41.667 0.00 0.00 36.23 1.82
549 570 3.071457 CCTCCTTTGGTTTGCAGGAATTT 59.929 43.478 0.00 0.00 36.23 1.82
550 571 2.634453 CCTCCTTTGGTTTGCAGGAATT 59.366 45.455 0.00 0.00 36.23 2.17
551 572 2.250924 CCTCCTTTGGTTTGCAGGAAT 58.749 47.619 0.00 0.00 36.23 3.01
552 573 1.703411 CCTCCTTTGGTTTGCAGGAA 58.297 50.000 0.00 0.00 36.23 3.36
553 574 0.827507 GCCTCCTTTGGTTTGCAGGA 60.828 55.000 0.00 0.00 35.32 3.86
554 575 1.667722 GCCTCCTTTGGTTTGCAGG 59.332 57.895 0.00 0.00 0.00 4.85
555 576 0.829182 AGGCCTCCTTTGGTTTGCAG 60.829 55.000 0.00 0.00 0.00 4.41
556 577 0.480690 TAGGCCTCCTTTGGTTTGCA 59.519 50.000 9.68 0.00 34.61 4.08
557 578 1.272490 GTTAGGCCTCCTTTGGTTTGC 59.728 52.381 9.68 0.00 34.61 3.68
558 579 1.893137 GGTTAGGCCTCCTTTGGTTTG 59.107 52.381 9.68 0.00 34.61 2.93
559 580 1.787058 AGGTTAGGCCTCCTTTGGTTT 59.213 47.619 9.68 0.00 46.96 3.27
560 581 1.456919 AGGTTAGGCCTCCTTTGGTT 58.543 50.000 9.68 0.00 46.96 3.67
561 582 3.198784 AGGTTAGGCCTCCTTTGGT 57.801 52.632 9.68 0.00 46.96 3.67
570 591 1.549170 TCAAGACGAAGAGGTTAGGCC 59.451 52.381 0.00 0.00 37.58 5.19
571 592 2.492484 TCTCAAGACGAAGAGGTTAGGC 59.508 50.000 0.00 0.00 32.76 3.93
572 593 4.099380 GTCTCAAGACGAAGAGGTTAGG 57.901 50.000 0.00 0.00 35.12 2.69
588 609 0.693622 AGAGTCCACCTCGAGTCTCA 59.306 55.000 12.31 0.00 45.44 3.27
713 737 7.410120 AAGTAATAAAAGAGGAAGCCATTGG 57.590 36.000 0.00 0.00 0.00 3.16
718 742 5.823570 GGAGGAAGTAATAAAAGAGGAAGCC 59.176 44.000 0.00 0.00 0.00 4.35
730 754 7.375890 AGGGGTATGTAAAGGAGGAAGTAATA 58.624 38.462 0.00 0.00 0.00 0.98
840 864 0.548031 ATCCACGGTGAATGGCTCAT 59.452 50.000 10.28 0.00 36.14 2.90
857 881 5.050499 CGGTTGATCTCACATTTCTAGCATC 60.050 44.000 0.00 0.00 0.00 3.91
880 904 2.098607 AGAAATGGTGCATGCATTCTCG 59.901 45.455 25.64 0.00 0.00 4.04
919 943 4.818005 TGCATGCCTCTACTGTTAATCATG 59.182 41.667 16.68 0.00 34.76 3.07
1004 1028 3.532542 CGAGAGGAAGTAAATTGGGTCC 58.467 50.000 0.00 0.00 0.00 4.46
1030 1054 5.108187 TGCTGATAAGCCTGATCTTCTTT 57.892 39.130 0.00 0.00 0.00 2.52
1149 1173 1.601759 GGCTGTATGCATCGCCCAT 60.602 57.895 18.78 0.00 45.15 4.00
1223 1247 1.038130 AGAGATGCTTAGACGGCGGT 61.038 55.000 13.24 0.00 0.00 5.68
1238 1262 3.237746 CCCTTCATCAGCTGGATAGAGA 58.762 50.000 15.13 0.37 33.95 3.10
1270 1294 3.054655 GTCTGTTTGGTATTAGGCCCAGA 60.055 47.826 0.00 0.00 31.04 3.86
1305 1329 6.071984 GGGATCTCAGGTCTTAGATGTTAGA 58.928 44.000 0.00 0.00 32.60 2.10
1419 1443 3.002791 CAAGGTTGATGCATCAGTACGT 58.997 45.455 27.25 21.59 38.19 3.57
1420 1444 2.223112 GCAAGGTTGATGCATCAGTACG 60.223 50.000 27.25 17.24 43.29 3.67
1565 1589 1.040646 AGGACTTCAAGCTGTGTCGA 58.959 50.000 0.00 0.00 0.00 4.20
1747 1772 1.173444 ACTGCGGTGTCGTCTCTCTT 61.173 55.000 0.00 0.00 38.89 2.85
1852 1877 1.429148 CGCCGTTACCTTGATGGAGC 61.429 60.000 0.00 0.00 39.71 4.70
1873 1898 1.103398 GGTAGGCGATGGCAGCATTT 61.103 55.000 2.73 0.00 42.47 2.32
1876 1901 4.529219 CGGTAGGCGATGGCAGCA 62.529 66.667 2.73 0.00 42.47 4.41
2126 2151 0.042581 TCTGGATCTGGTGGTGCCTA 59.957 55.000 0.00 0.00 38.35 3.93
2148 2173 3.090532 GGCCCTTGACCCCGATCT 61.091 66.667 0.00 0.00 0.00 2.75
2226 2251 3.518998 CTCCGGCGATGACTCGGT 61.519 66.667 9.30 0.00 45.15 4.69
2272 2298 2.897972 GGTGCGAGTTATCCCGGT 59.102 61.111 0.00 0.00 0.00 5.28
2708 2734 1.077429 ATCTTGCCCCTTTCCTCGC 60.077 57.895 0.00 0.00 0.00 5.03
2867 2893 1.927487 AGCCCATGCACAGAATCAAA 58.073 45.000 0.00 0.00 41.13 2.69
2868 2894 2.290832 TGTAGCCCATGCACAGAATCAA 60.291 45.455 0.00 0.00 41.13 2.57
2869 2895 1.281577 TGTAGCCCATGCACAGAATCA 59.718 47.619 0.00 0.00 41.13 2.57
2870 2896 2.042686 TGTAGCCCATGCACAGAATC 57.957 50.000 0.00 0.00 41.13 2.52
2871 2897 2.291153 ACTTGTAGCCCATGCACAGAAT 60.291 45.455 0.00 0.00 41.13 2.40
2872 2898 1.073763 ACTTGTAGCCCATGCACAGAA 59.926 47.619 0.00 0.00 41.13 3.02
2873 2899 0.692476 ACTTGTAGCCCATGCACAGA 59.308 50.000 0.00 0.00 41.13 3.41
2874 2900 0.806868 CACTTGTAGCCCATGCACAG 59.193 55.000 0.00 0.00 41.13 3.66
2875 2901 1.243342 GCACTTGTAGCCCATGCACA 61.243 55.000 0.00 0.00 41.13 4.57
2876 2902 1.243342 TGCACTTGTAGCCCATGCAC 61.243 55.000 0.00 0.00 41.18 4.57
2877 2903 0.539207 TTGCACTTGTAGCCCATGCA 60.539 50.000 0.00 0.00 44.19 3.96
2878 2904 0.819582 ATTGCACTTGTAGCCCATGC 59.180 50.000 0.00 0.00 36.81 4.06
2879 2905 1.820519 ACATTGCACTTGTAGCCCATG 59.179 47.619 0.00 0.00 0.00 3.66
2880 2906 1.820519 CACATTGCACTTGTAGCCCAT 59.179 47.619 1.35 0.00 0.00 4.00
2881 2907 1.202867 TCACATTGCACTTGTAGCCCA 60.203 47.619 1.35 0.00 0.00 5.36
2882 2908 1.470098 CTCACATTGCACTTGTAGCCC 59.530 52.381 1.35 0.00 0.00 5.19
2883 2909 2.095567 CACTCACATTGCACTTGTAGCC 60.096 50.000 1.35 0.00 0.00 3.93
2884 2910 2.095567 CCACTCACATTGCACTTGTAGC 60.096 50.000 1.35 0.00 0.00 3.58
2885 2911 3.141398 ACCACTCACATTGCACTTGTAG 58.859 45.455 1.35 3.59 0.00 2.74
2886 2912 3.207265 ACCACTCACATTGCACTTGTA 57.793 42.857 1.35 0.00 0.00 2.41
2887 2913 2.057137 ACCACTCACATTGCACTTGT 57.943 45.000 0.00 0.00 0.00 3.16
2888 2914 2.099592 ACAACCACTCACATTGCACTTG 59.900 45.455 0.00 0.00 0.00 3.16
2889 2915 2.378038 ACAACCACTCACATTGCACTT 58.622 42.857 0.00 0.00 0.00 3.16
2890 2916 2.057137 ACAACCACTCACATTGCACT 57.943 45.000 0.00 0.00 0.00 4.40
2891 2917 2.098934 TCAACAACCACTCACATTGCAC 59.901 45.455 0.00 0.00 0.00 4.57
2892 2918 2.373224 TCAACAACCACTCACATTGCA 58.627 42.857 0.00 0.00 0.00 4.08
2950 2976 4.446719 AGAAAAACTACAAGGCGTTCTACG 59.553 41.667 0.00 0.00 45.88 3.51
2956 2982 4.976224 AACAAGAAAAACTACAAGGCGT 57.024 36.364 0.00 0.00 0.00 5.68
2958 2984 6.237835 GCAAGAAACAAGAAAAACTACAAGGC 60.238 38.462 0.00 0.00 0.00 4.35
2974 3000 7.665559 AGGAATAGTTATGTGAAGCAAGAAACA 59.334 33.333 0.00 0.00 0.00 2.83
3068 3094 6.662755 TCAAAAGGATATGACCAGCAGTTAT 58.337 36.000 0.00 0.00 0.00 1.89
3167 3193 8.648698 TCAAAGGAATTATCACCAAATTCTCA 57.351 30.769 8.08 0.00 41.20 3.27
3441 3799 4.100529 CAAAAATATCACAGCTTGCCTCG 58.899 43.478 0.00 0.00 0.00 4.63
3508 3867 1.055040 GATGAGATGGTCTGGGGGAG 58.945 60.000 0.00 0.00 0.00 4.30
3525 3884 2.283809 CAGGGGAGGGACGGAGAT 59.716 66.667 0.00 0.00 0.00 2.75
3583 3990 5.743398 TGCTCAGAAACTTGAAACAAAATCG 59.257 36.000 0.00 0.00 0.00 3.34
3631 4038 1.613437 GCAAAGTGCCCTGTGTTACAT 59.387 47.619 0.00 0.00 37.42 2.29
3892 4302 7.092891 TGGACATAGAACATAGGAAACACATCT 60.093 37.037 0.00 0.00 0.00 2.90
3894 4304 6.957631 TGGACATAGAACATAGGAAACACAT 58.042 36.000 0.00 0.00 0.00 3.21
3896 4306 9.209175 GATATGGACATAGAACATAGGAAACAC 57.791 37.037 0.00 0.00 31.35 3.32
3955 4365 3.319137 AAAGAGCTCATGCGACACTAA 57.681 42.857 17.77 0.00 45.42 2.24
3984 4394 3.132160 CTGATCCTTGTGCAGCTCTATG 58.868 50.000 0.00 0.00 0.00 2.23
4085 4565 6.039717 GGATTAAGGAATATCTGCACAGCAAA 59.960 38.462 0.00 0.00 38.41 3.68
4193 4681 0.908198 AGGATCTTCCACCTGAGTGC 59.092 55.000 0.00 0.00 43.09 4.40
4227 4797 1.155424 CCATTTTGGCGCATCATGGC 61.155 55.000 10.83 0.00 0.00 4.40
4229 4799 1.282817 CACCATTTTGGCGCATCATG 58.717 50.000 10.83 5.40 42.67 3.07
4236 4806 1.003262 CGTTGAGCACCATTTTGGCG 61.003 55.000 0.00 0.00 42.67 5.69
4284 4854 0.031585 GAAACGTTGGCAGGGGAAAC 59.968 55.000 0.00 0.00 0.00 2.78
4365 4990 5.644977 AAATTTAACAGGGCTCAGCTTAC 57.355 39.130 0.00 0.00 0.00 2.34
4592 5349 6.423001 TGAATAGAATTCATCTGATGTGCGAG 59.577 38.462 16.66 0.00 39.30 5.03
4651 5408 3.902881 ATGACAGCTCTTCCTTGGTAG 57.097 47.619 0.00 0.00 0.00 3.18
4652 5409 4.326826 CAAATGACAGCTCTTCCTTGGTA 58.673 43.478 0.00 0.00 0.00 3.25
4653 5410 3.152341 CAAATGACAGCTCTTCCTTGGT 58.848 45.455 0.00 0.00 0.00 3.67
4654 5411 2.490903 CCAAATGACAGCTCTTCCTTGG 59.509 50.000 7.78 7.78 0.00 3.61
4693 5469 7.637709 AGTCTTGTCTTCACAAAACAAAAAC 57.362 32.000 0.00 0.00 42.13 2.43
4703 5491 6.767423 TCATCAATCAAAGTCTTGTCTTCACA 59.233 34.615 0.00 0.00 33.94 3.58
4721 5509 8.527810 ACCCGTTTGTGTTAAATAATCATCAAT 58.472 29.630 0.00 0.00 0.00 2.57
4772 5561 6.549912 ACTTTAGGAAACAAATACGGTGAC 57.450 37.500 0.00 0.00 0.00 3.67
4773 5562 7.444299 AGTACTTTAGGAAACAAATACGGTGA 58.556 34.615 0.00 0.00 0.00 4.02
4790 5581 3.184986 GCAACCGCGAGAAAAGTACTTTA 59.815 43.478 20.83 0.00 31.63 1.85
4825 5618 9.666626 GACTACTACGATATGTGGATTATATGC 57.333 37.037 0.00 0.00 32.52 3.14
4844 5637 6.897966 AGGAAACCTCTGATCAATGACTACTA 59.102 38.462 0.00 0.00 0.00 1.82
4851 5647 8.338259 CGTTAATAAGGAAACCTCTGATCAATG 58.662 37.037 0.00 0.00 30.89 2.82
4867 5663 5.343593 TGCGCATTTTGTTTCGTTAATAAGG 59.656 36.000 5.66 0.00 0.00 2.69
4869 5665 6.936222 ATGCGCATTTTGTTTCGTTAATAA 57.064 29.167 19.28 0.00 0.00 1.40
4870 5666 6.363626 ACAATGCGCATTTTGTTTCGTTAATA 59.636 30.769 32.13 0.00 32.28 0.98
4871 5667 5.176590 ACAATGCGCATTTTGTTTCGTTAAT 59.823 32.000 32.13 4.10 32.28 1.40
4945 5741 4.895854 GCGTAACAAGACGGCCTA 57.104 55.556 0.00 0.00 43.13 3.93
4975 5771 2.624766 CGCACACGTGAACAAGTTTAG 58.375 47.619 25.01 0.00 33.53 1.85
4979 5775 1.436195 ATGCGCACACGTGAACAAGT 61.436 50.000 25.01 0.00 42.83 3.16
4983 5779 2.796617 GCATGCGCACACGTGAAC 60.797 61.111 25.01 12.50 42.83 3.18
5011 5810 2.032528 TTTGCGCCTCCACCTCTG 59.967 61.111 4.18 0.00 0.00 3.35
5012 5811 2.348998 CTTTGCGCCTCCACCTCT 59.651 61.111 4.18 0.00 0.00 3.69
5044 5843 5.412904 CCAGAATTGTAGTCTCCAAGTTTCC 59.587 44.000 0.00 0.00 0.00 3.13
5053 5852 1.661112 GTGCGCCAGAATTGTAGTCTC 59.339 52.381 4.18 0.00 0.00 3.36
5054 5853 1.001974 TGTGCGCCAGAATTGTAGTCT 59.998 47.619 4.18 0.00 0.00 3.24
5055 5854 1.394917 CTGTGCGCCAGAATTGTAGTC 59.605 52.381 17.75 0.00 44.49 2.59
5056 5855 1.442769 CTGTGCGCCAGAATTGTAGT 58.557 50.000 17.75 0.00 44.49 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.