Multiple sequence alignment - TraesCS6A01G229500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G229500 chr6A 100.000 6411 0 0 1 6411 432258969 432252559 0.000000e+00 11839.0
1 TraesCS6A01G229500 chr6D 89.563 3526 228 62 2308 5779 291233318 291236757 0.000000e+00 4344.0
2 TraesCS6A01G229500 chr6D 90.203 2317 148 34 1 2302 291230816 291233068 0.000000e+00 2948.0
3 TraesCS6A01G229500 chr6D 82.339 436 61 13 5985 6409 291237195 291237625 1.310000e-96 364.0
4 TraesCS6A01G229500 chr6D 91.892 74 4 2 5906 5978 190570438 190570366 1.140000e-17 102.0
5 TraesCS6A01G229500 chr6B 94.471 1863 56 17 2734 4587 452173956 452175780 0.000000e+00 2826.0
6 TraesCS6A01G229500 chr6B 91.116 1936 97 27 744 2661 452170867 452172745 0.000000e+00 2553.0
7 TraesCS6A01G229500 chr6B 92.234 1043 44 9 4659 5666 452176190 452177230 0.000000e+00 1443.0
8 TraesCS6A01G229500 chr6B 89.779 587 45 5 1 582 452163998 452164574 0.000000e+00 737.0
9 TraesCS6A01G229500 chr6B 76.707 249 39 14 6062 6305 165050677 165050443 3.140000e-23 121.0
10 TraesCS6A01G229500 chr6B 84.043 94 10 5 5892 5982 564912447 564912538 1.150000e-12 86.1
11 TraesCS6A01G229500 chr6B 93.103 58 2 1 684 739 452164631 452164574 4.120000e-12 84.2
12 TraesCS6A01G229500 chr5B 78.519 270 39 14 6078 6342 573149381 573149126 6.650000e-35 159.0
13 TraesCS6A01G229500 chr5B 87.778 90 8 3 6072 6161 369611299 369611385 1.140000e-17 102.0
14 TraesCS6A01G229500 chr3B 77.941 272 42 16 6091 6356 373517707 373517448 3.100000e-33 154.0
15 TraesCS6A01G229500 chr3A 78.509 228 39 9 6072 6293 585569201 585569424 2.410000e-29 141.0
16 TraesCS6A01G229500 chr3A 91.011 89 7 1 4102 4190 642920917 642921004 1.130000e-22 119.0
17 TraesCS6A01G229500 chr3A 95.652 69 1 2 5913 5980 191837033 191836966 6.800000e-20 110.0
18 TraesCS6A01G229500 chr2A 78.641 206 37 6 6062 6265 100671020 100670820 5.220000e-26 130.0
19 TraesCS6A01G229500 chr2A 81.452 124 23 0 447 570 688212731 688212854 1.140000e-17 102.0
20 TraesCS6A01G229500 chr2A 83.838 99 13 3 6199 6296 43372043 43371947 2.460000e-14 91.6
21 TraesCS6A01G229500 chr2D 84.211 133 18 1 4670 4802 600319063 600318934 6.750000e-25 126.0
22 TraesCS6A01G229500 chr2D 90.541 74 2 2 5906 5979 497994769 497994837 6.840000e-15 93.5
23 TraesCS6A01G229500 chr2D 92.453 53 4 0 5363 5415 459776301 459776353 6.890000e-10 76.8
24 TraesCS6A01G229500 chr7D 86.869 99 12 1 6067 6164 413112056 413112154 6.800000e-20 110.0
25 TraesCS6A01G229500 chr7D 97.674 43 1 0 5751 5793 524919499 524919541 2.480000e-09 75.0
26 TraesCS6A01G229500 chr5A 89.655 87 6 3 5896 5980 624080255 624080340 2.440000e-19 108.0
27 TraesCS6A01G229500 chr5A 90.909 77 5 2 5906 5980 379348514 379348438 1.140000e-17 102.0
28 TraesCS6A01G229500 chr5A 90.909 77 2 4 5906 5980 570525134 570525061 1.470000e-16 99.0
29 TraesCS6A01G229500 chr7A 83.784 111 14 4 6061 6170 652675229 652675336 1.140000e-17 102.0
30 TraesCS6A01G229500 chr1D 80.405 148 17 3 497 639 142153597 142153457 1.140000e-17 102.0
31 TraesCS6A01G229500 chr4A 89.474 76 7 1 5906 5980 428161487 428161412 1.900000e-15 95.3
32 TraesCS6A01G229500 chr1B 89.610 77 4 4 5905 5979 26300321 26300395 1.900000e-15 95.3
33 TraesCS6A01G229500 chr5D 83.099 71 9 3 6186 6255 528226690 528226758 1.930000e-05 62.1
34 TraesCS6A01G229500 chr4B 92.857 42 3 0 6192 6233 504830524 504830565 1.930000e-05 62.1
35 TraesCS6A01G229500 chr3D 96.875 32 1 0 604 635 600134782 600134751 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G229500 chr6A 432252559 432258969 6410 True 11839 11839 100.000000 1 6411 1 chr6A.!!$R1 6410
1 TraesCS6A01G229500 chr6D 291230816 291237625 6809 False 2552 4344 87.368333 1 6409 3 chr6D.!!$F1 6408
2 TraesCS6A01G229500 chr6B 452170867 452177230 6363 False 2274 2826 92.607000 744 5666 3 chr6B.!!$F3 4922
3 TraesCS6A01G229500 chr6B 452163998 452164574 576 False 737 737 89.779000 1 582 1 chr6B.!!$F1 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
499 505 0.039256 TCCACGCACGTACAACCTAC 60.039 55.000 0.00 0.0 0.00 3.18 F
617 631 0.389948 AAACGCGCTGGAAGGTCTAG 60.390 55.000 5.73 0.0 0.00 2.43 F
1535 1554 0.250338 GTGGCTTCTTGTTCTCCGGT 60.250 55.000 0.00 0.0 0.00 5.28 F
2531 2816 0.523968 GCAATACGTGTCTCGCCGTA 60.524 55.000 0.00 0.0 42.95 4.02 F
3343 4818 1.890979 CTGCATCACCATCGCCTCC 60.891 63.158 0.00 0.0 0.00 4.30 F
5251 7092 1.152777 CACCAACCAGGGAAGCACA 60.153 57.895 0.00 0.0 43.89 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1517 1536 0.250295 CACCGGAGAACAAGAAGCCA 60.250 55.000 9.46 0.0 0.0 4.75 R
2530 2815 0.890542 GGCATGATGGGCGCTGATTA 60.891 55.000 7.64 0.0 0.0 1.75 R
3306 4781 1.002888 AGTCATGCAGAGTGTTGAGGG 59.997 52.381 0.00 0.0 0.0 4.30 R
4140 5625 0.555769 TCCTTGTTTCCTGCAACCCT 59.444 50.000 0.00 0.0 0.0 4.34 R
5342 7183 0.167470 CTCGCAATGCTCACAGTTGG 59.833 55.000 2.94 0.0 0.0 3.77 R
6349 8452 7.862512 TTTTCTTGTGCATGAGGAAATTTTT 57.137 28.000 0.00 0.0 0.0 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.218047 CGAAGGGCTTGATCCGTCA 59.782 57.895 0.00 0.00 33.37 4.35
46 47 0.103208 GGCTTGATCCGTCAGACGAT 59.897 55.000 24.88 14.98 46.05 3.73
53 54 2.109425 TCCGTCAGACGATGAAGAGA 57.891 50.000 24.88 8.08 46.05 3.10
76 81 5.395682 TCTTAAAGCACGGAAGTTAGCTA 57.604 39.130 0.00 0.00 46.40 3.32
87 92 4.638304 GGAAGTTAGCTAAACACCAGACA 58.362 43.478 7.99 0.00 40.83 3.41
137 142 2.910479 CATCGCCAGCCATGCCAT 60.910 61.111 0.00 0.00 0.00 4.40
165 170 0.250553 GAACAACCCCCACGATGACA 60.251 55.000 0.00 0.00 0.00 3.58
180 185 4.462834 ACGATGACACAATGAAGAGACCTA 59.537 41.667 0.00 0.00 0.00 3.08
181 186 5.039984 CGATGACACAATGAAGAGACCTAG 58.960 45.833 0.00 0.00 0.00 3.02
182 187 4.193826 TGACACAATGAAGAGACCTAGC 57.806 45.455 0.00 0.00 0.00 3.42
380 386 6.879400 TCTTTTCTATTCCTTCTCCTACTGC 58.121 40.000 0.00 0.00 0.00 4.40
454 460 3.854666 ACAGATGCAGACACTCATACAC 58.145 45.455 0.00 0.00 0.00 2.90
463 469 3.937079 AGACACTCATACACATGCACATG 59.063 43.478 9.06 9.06 44.15 3.21
481 487 4.454847 CACATGCACTCATCCCTATGAATC 59.545 45.833 0.00 0.00 41.57 2.52
490 496 0.179084 CCCTATGAATCCACGCACGT 60.179 55.000 0.00 0.00 0.00 4.49
499 505 0.039256 TCCACGCACGTACAACCTAC 60.039 55.000 0.00 0.00 0.00 3.18
500 506 1.010419 CCACGCACGTACAACCTACC 61.010 60.000 0.00 0.00 0.00 3.18
511 517 2.776665 ACAACCTACCCCTATGAGCAT 58.223 47.619 0.00 0.00 0.00 3.79
522 528 4.648762 CCCCTATGAGCATATTCGAGAGAT 59.351 45.833 0.00 0.00 41.60 2.75
529 535 3.323115 AGCATATTCGAGAGATTGAGCCA 59.677 43.478 0.00 0.00 41.60 4.75
533 539 3.401033 TTCGAGAGATTGAGCCAACAA 57.599 42.857 0.00 0.00 41.60 2.83
546 553 5.072055 TGAGCCAACAAATCATCTTGAGAA 58.928 37.500 0.00 0.00 0.00 2.87
571 578 1.530323 AAGTCGCCATAAACGCCTTT 58.470 45.000 0.00 0.00 0.00 3.11
586 593 1.405121 GCCTTTGTAGTCGACGGGAAT 60.405 52.381 10.46 0.00 0.00 3.01
587 594 2.159198 GCCTTTGTAGTCGACGGGAATA 60.159 50.000 10.46 0.00 0.00 1.75
589 596 4.690122 CCTTTGTAGTCGACGGGAATATT 58.310 43.478 10.46 0.00 0.00 1.28
591 598 5.583457 CCTTTGTAGTCGACGGGAATATTTT 59.417 40.000 10.46 0.00 0.00 1.82
593 600 6.651755 TTGTAGTCGACGGGAATATTTTTC 57.348 37.500 10.46 0.00 0.00 2.29
594 601 5.111293 TGTAGTCGACGGGAATATTTTTCC 58.889 41.667 10.46 0.00 37.86 3.13
606 613 1.541379 ATTTTTCCCCTAAACGCGCT 58.459 45.000 5.73 0.00 0.00 5.92
613 627 1.375523 CCTAAACGCGCTGGAAGGT 60.376 57.895 5.73 0.00 0.00 3.50
616 630 0.889994 TAAACGCGCTGGAAGGTCTA 59.110 50.000 5.73 0.00 0.00 2.59
617 631 0.389948 AAACGCGCTGGAAGGTCTAG 60.390 55.000 5.73 0.00 0.00 2.43
632 646 8.611257 TGGAAGGTCTAGAATAAATCCAGAAAA 58.389 33.333 0.00 0.00 32.29 2.29
636 650 9.981460 AGGTCTAGAATAAATCCAGAAAAATGT 57.019 29.630 0.00 0.00 27.10 2.71
647 661 4.761739 TCCAGAAAAATGTGAGTCATGACC 59.238 41.667 22.21 13.88 36.81 4.02
648 662 4.082571 CCAGAAAAATGTGAGTCATGACCC 60.083 45.833 22.21 11.67 36.81 4.46
662 676 3.630769 TCATGACCCGTAGATCTACACAC 59.369 47.826 28.00 17.33 35.87 3.82
663 677 3.076079 TGACCCGTAGATCTACACACA 57.924 47.619 28.00 19.21 35.87 3.72
727 742 3.445805 CCAAAAACACAACTACCACCACT 59.554 43.478 0.00 0.00 0.00 4.00
949 964 6.881065 TCTGATCAGGAAGAAACCAACTATTG 59.119 38.462 22.42 0.00 0.00 1.90
989 1004 0.861837 CGGGCTGTTCTATCAATCGC 59.138 55.000 0.00 0.00 0.00 4.58
992 1010 0.861837 GCTGTTCTATCAATCGCCCG 59.138 55.000 0.00 0.00 0.00 6.13
1011 1029 1.815408 CGTCCCATAATGGCTTCTGGG 60.815 57.143 12.36 12.36 45.78 4.45
1047 1065 3.423162 CTCGCTCTCCGGCCAAGAG 62.423 68.421 22.32 22.32 42.62 2.85
1096 1114 3.024609 CCGCCGACATCGACATCG 61.025 66.667 12.11 12.11 43.02 3.84
1098 1116 2.278857 GCCGACATCGACATCGCT 60.279 61.111 13.32 0.00 43.02 4.93
1155 1173 4.052229 CCCGACGCTCAACTCGGT 62.052 66.667 8.79 0.00 46.78 4.69
1164 1182 2.111043 CAACTCGGTGTGCCAGGT 59.889 61.111 0.00 0.00 34.09 4.00
1165 1183 1.961277 CAACTCGGTGTGCCAGGTC 60.961 63.158 0.00 0.00 34.09 3.85
1166 1184 2.439960 AACTCGGTGTGCCAGGTCA 61.440 57.895 0.00 0.00 34.09 4.02
1220 1238 5.383476 CTTCAATAGGGGAGCTCATGAAAT 58.617 41.667 17.19 0.00 0.00 2.17
1256 1274 4.166011 GCTAGCCAGTTTGCCGCG 62.166 66.667 2.29 0.00 0.00 6.46
1286 1305 5.419155 TCCGATCCAATGTTATCTAGCTAGG 59.581 44.000 20.58 2.23 0.00 3.02
1292 1311 7.952671 TCCAATGTTATCTAGCTAGGTTGTAG 58.047 38.462 20.58 2.91 0.00 2.74
1297 1316 8.405418 TGTTATCTAGCTAGGTTGTAGGTATG 57.595 38.462 20.58 0.00 0.00 2.39
1373 1392 2.160721 TGAGGGGTGATCTGGACTAC 57.839 55.000 0.00 0.00 0.00 2.73
1421 1440 4.719369 GTCGGGTCGAGCGCAGTT 62.719 66.667 11.47 0.00 36.23 3.16
1517 1536 2.586792 GAGCAAGATCAGGCCGGT 59.413 61.111 1.90 0.00 0.00 5.28
1535 1554 0.250338 GTGGCTTCTTGTTCTCCGGT 60.250 55.000 0.00 0.00 0.00 5.28
1569 1588 1.753848 AGCACCAACAGCAACAGCA 60.754 52.632 0.00 0.00 0.00 4.41
2063 2089 7.099266 TCACATTAATTGTTGATCCATGACC 57.901 36.000 0.00 0.00 36.00 4.02
2084 2112 7.562135 TGACCTACACTAATTAGTCCATTTCC 58.438 38.462 15.35 3.83 33.46 3.13
2102 2130 3.627395 TCCAATTGGGCTAGTACACTG 57.373 47.619 24.29 0.00 36.21 3.66
2179 2211 7.888105 AGGGATCTATGCTAGTCAGGATAATA 58.112 38.462 0.00 0.00 34.99 0.98
2185 2217 6.678568 ATGCTAGTCAGGATAATACAAGCT 57.321 37.500 0.00 0.00 29.80 3.74
2186 2218 7.782897 ATGCTAGTCAGGATAATACAAGCTA 57.217 36.000 0.00 0.00 29.80 3.32
2187 2219 7.220741 TGCTAGTCAGGATAATACAAGCTAG 57.779 40.000 0.00 0.00 0.00 3.42
2188 2220 7.004691 TGCTAGTCAGGATAATACAAGCTAGA 58.995 38.462 0.00 0.00 0.00 2.43
2189 2221 7.175816 TGCTAGTCAGGATAATACAAGCTAGAG 59.824 40.741 0.00 0.00 0.00 2.43
2279 2311 7.929785 AGAAAAGGTGACAAATCGACTTAGTTA 59.070 33.333 0.00 0.00 0.00 2.24
2325 2602 1.818060 TGCTCCCATTTTTCATCCACG 59.182 47.619 0.00 0.00 0.00 4.94
2339 2616 5.988310 TCATCCACGAGTTAGGTAAAAGA 57.012 39.130 0.00 0.00 0.00 2.52
2354 2631 5.067954 GGTAAAAGACTTTCACCCTGCTTA 58.932 41.667 8.91 0.00 0.00 3.09
2356 2633 6.040054 GGTAAAAGACTTTCACCCTGCTTAAA 59.960 38.462 8.91 0.00 0.00 1.52
2359 2636 5.048846 AGACTTTCACCCTGCTTAAAAGA 57.951 39.130 0.00 0.00 32.59 2.52
2360 2637 5.635120 AGACTTTCACCCTGCTTAAAAGAT 58.365 37.500 0.00 0.00 32.59 2.40
2392 2669 5.381757 ACCACCACATACATACAACAAAGT 58.618 37.500 0.00 0.00 0.00 2.66
2402 2679 5.581605 ACATACAACAAAGTTCAAGCACAG 58.418 37.500 0.00 0.00 0.00 3.66
2457 2738 5.010213 ACAACACAAACGTGCCCTAATAAAT 59.990 36.000 0.00 0.00 37.97 1.40
2459 2740 6.821031 ACACAAACGTGCCCTAATAAATAA 57.179 33.333 0.00 0.00 37.97 1.40
2461 2742 7.832769 ACACAAACGTGCCCTAATAAATAAAT 58.167 30.769 0.00 0.00 37.97 1.40
2525 2810 2.000447 GGGTGAAGCAATACGTGTCTC 59.000 52.381 0.00 0.00 0.00 3.36
2530 2815 1.804326 GCAATACGTGTCTCGCCGT 60.804 57.895 0.00 0.00 44.19 5.68
2531 2816 0.523968 GCAATACGTGTCTCGCCGTA 60.524 55.000 0.00 0.00 42.95 4.02
2622 2909 5.446073 GCTCACTGGCTAATTAAGAAACGAC 60.446 44.000 0.00 0.00 0.00 4.34
2623 2910 5.790593 TCACTGGCTAATTAAGAAACGACT 58.209 37.500 0.00 0.00 0.00 4.18
2624 2911 6.228258 TCACTGGCTAATTAAGAAACGACTT 58.772 36.000 0.00 0.00 0.00 3.01
2628 2915 9.227777 ACTGGCTAATTAAGAAACGACTTATTT 57.772 29.630 0.00 2.47 33.29 1.40
2675 4136 3.842732 ACGAGTACACGACATGATTCA 57.157 42.857 19.65 0.00 37.03 2.57
2688 4149 7.698550 CACGACATGATTCATACTATAGCTACC 59.301 40.741 0.00 0.00 0.00 3.18
2713 4174 7.442969 CCACTTAGTACTTACCACACAATTTGA 59.557 37.037 0.00 0.00 0.00 2.69
2718 4179 8.603242 AGTACTTACCACACAATTTGAACTAG 57.397 34.615 2.79 0.00 0.00 2.57
2719 4180 8.208903 AGTACTTACCACACAATTTGAACTAGT 58.791 33.333 2.79 0.00 0.00 2.57
2720 4181 9.480053 GTACTTACCACACAATTTGAACTAGTA 57.520 33.333 2.79 0.00 0.00 1.82
2722 4183 9.569122 ACTTACCACACAATTTGAACTAGTATT 57.431 29.630 2.79 0.00 0.00 1.89
2792 4253 4.240881 TCTACACCACTATAACCCGAGT 57.759 45.455 0.00 0.00 0.00 4.18
2818 4279 9.742144 TGCACCAAAATAAGAGGTATAACTAAA 57.258 29.630 0.00 0.00 33.49 1.85
2837 4298 8.549338 AACTAAATTAACTGTTCTAGCTGACC 57.451 34.615 0.00 0.00 0.00 4.02
2838 4299 7.104290 ACTAAATTAACTGTTCTAGCTGACCC 58.896 38.462 0.00 0.00 0.00 4.46
2839 4300 5.499004 AATTAACTGTTCTAGCTGACCCA 57.501 39.130 0.00 0.00 0.00 4.51
2840 4301 4.967084 TTAACTGTTCTAGCTGACCCAA 57.033 40.909 0.00 0.00 0.00 4.12
2841 4302 3.409026 AACTGTTCTAGCTGACCCAAG 57.591 47.619 0.00 0.00 0.00 3.61
2842 4303 2.330216 ACTGTTCTAGCTGACCCAAGT 58.670 47.619 0.00 0.00 0.00 3.16
2867 4328 4.096382 CCCAACACAAATAGATAGTGTGGC 59.904 45.833 7.82 0.00 44.99 5.01
2942 4405 2.808543 AGACCTCTCAAAACGAATGTGC 59.191 45.455 0.00 0.00 0.00 4.57
2950 4413 4.297510 TCAAAACGAATGTGCTTCAATGG 58.702 39.130 0.00 0.00 33.10 3.16
3026 4495 6.908870 TCAACATACTCTTGCACATACATC 57.091 37.500 0.00 0.00 0.00 3.06
3230 4699 8.806146 AGGCAAGGTAATAAAAATGGCTATATG 58.194 33.333 0.00 0.00 41.20 1.78
3287 4762 3.267483 ACACCCGTGATGTGCTATTTAC 58.733 45.455 0.96 0.00 37.22 2.01
3303 4778 7.696453 GTGCTATTTACGCATTTTATCTTGTGT 59.304 33.333 0.00 0.00 39.89 3.72
3343 4818 1.890979 CTGCATCACCATCGCCTCC 60.891 63.158 0.00 0.00 0.00 4.30
3383 4858 5.491070 TGTCCTCCACAATCAGTTTATCTG 58.509 41.667 0.00 0.00 37.52 2.90
3418 4893 6.127338 GCCTTACTCTCTGGCCATTTTTATTT 60.127 38.462 5.51 0.00 40.71 1.40
3618 5094 6.309436 GCTTTTTCCTTGCATTGCTATTTTC 58.691 36.000 10.49 0.00 0.00 2.29
3619 5095 6.073112 GCTTTTTCCTTGCATTGCTATTTTCA 60.073 34.615 10.49 0.00 0.00 2.69
3785 5261 2.350868 CGAGCCGACGTTCATCTCATAT 60.351 50.000 0.00 0.00 0.00 1.78
3789 5265 3.802139 GCCGACGTTCATCTCATATTGAA 59.198 43.478 0.00 0.00 0.00 2.69
3790 5266 4.318121 GCCGACGTTCATCTCATATTGAAC 60.318 45.833 7.62 7.62 45.22 3.18
3791 5267 5.043903 CCGACGTTCATCTCATATTGAACT 58.956 41.667 13.46 4.15 46.04 3.01
3868 5346 2.291741 CAGGAATAGCAGCGGATTTTCC 59.708 50.000 14.55 14.55 39.78 3.13
4004 5489 7.736447 ATTCTTAGAATTAGTAGGCATGCAC 57.264 36.000 21.36 10.23 0.00 4.57
4029 5514 8.814235 ACGTAAGCAAACATGTATGTTAGATAC 58.186 33.333 10.37 10.15 46.45 2.24
4219 5704 8.754080 CAGATATAATTAACCCTCTCTTCGGAT 58.246 37.037 0.00 0.00 0.00 4.18
4354 5839 5.428496 TTCTTGAACTCTTCGTCTCGTAA 57.572 39.130 0.00 0.00 0.00 3.18
4370 5855 5.744819 GTCTCGTAAAGCTGAAGGTTAGATC 59.255 44.000 0.00 0.00 35.00 2.75
4374 5859 6.153000 TCGTAAAGCTGAAGGTTAGATCTTCT 59.847 38.462 0.00 0.00 40.73 2.85
4375 5860 7.338703 TCGTAAAGCTGAAGGTTAGATCTTCTA 59.661 37.037 0.00 0.00 40.73 2.10
4376 5861 8.138712 CGTAAAGCTGAAGGTTAGATCTTCTAT 58.861 37.037 0.00 0.00 40.73 1.98
4419 5904 5.095490 GCAATAAAATAGTGGTCACTGCAC 58.905 41.667 13.32 0.00 42.52 4.57
4470 5955 8.788806 TCAAGTTTTTGTCTCAAAGTTGTCTAA 58.211 29.630 11.03 0.00 41.96 2.10
4471 5956 9.065871 CAAGTTTTTGTCTCAAAGTTGTCTAAG 57.934 33.333 5.24 0.00 38.75 2.18
4472 5957 8.561738 AGTTTTTGTCTCAAAGTTGTCTAAGA 57.438 30.769 0.00 0.00 0.00 2.10
4473 5958 9.010029 AGTTTTTGTCTCAAAGTTGTCTAAGAA 57.990 29.630 0.00 0.00 0.00 2.52
4474 5959 9.620660 GTTTTTGTCTCAAAGTTGTCTAAGAAA 57.379 29.630 0.00 0.00 0.00 2.52
4476 5961 9.840427 TTTTGTCTCAAAGTTGTCTAAGAAAAG 57.160 29.630 0.00 0.00 0.00 2.27
4666 6492 3.641436 ACCATGCATCCTAATCTCGTACA 59.359 43.478 0.00 0.00 0.00 2.90
4732 6558 1.361668 CGATCAAGTTCCGTGGGCTG 61.362 60.000 0.00 0.00 0.00 4.85
4972 6804 2.517875 ATCGCATTCCAGCAGCCC 60.518 61.111 0.00 0.00 0.00 5.19
5251 7092 1.152777 CACCAACCAGGGAAGCACA 60.153 57.895 0.00 0.00 43.89 4.57
5287 7128 2.482839 CGAAGAGGGGAAGCTCAATCTC 60.483 54.545 0.00 0.00 0.00 2.75
5356 7197 2.629656 GGCGCCAACTGTGAGCATT 61.630 57.895 24.80 0.00 32.19 3.56
5430 7271 0.615331 TGATGGTGAAGAGGGCAGAC 59.385 55.000 0.00 0.00 0.00 3.51
5460 7301 1.694150 AGCGGGATTCATTAGCTAGCA 59.306 47.619 18.83 0.00 36.28 3.49
5464 7305 3.743396 CGGGATTCATTAGCTAGCAAGAC 59.257 47.826 18.83 0.96 0.00 3.01
5466 7307 4.754114 GGGATTCATTAGCTAGCAAGACAG 59.246 45.833 18.83 1.50 0.00 3.51
5471 7312 4.157840 TCATTAGCTAGCAAGACAGTCGAA 59.842 41.667 18.83 0.00 0.00 3.71
5472 7313 4.514781 TTAGCTAGCAAGACAGTCGAAA 57.485 40.909 18.83 0.00 0.00 3.46
5487 7329 4.021719 CAGTCGAAAAGTTAGGTCAGGGTA 60.022 45.833 0.00 0.00 0.00 3.69
5507 7353 0.448197 TTGCTCGTTGTTGCGTTTCA 59.552 45.000 0.00 0.00 0.00 2.69
5615 7462 4.261801 TGGCAAGTCAGGATAACTAAAGC 58.738 43.478 0.00 0.00 0.00 3.51
5616 7463 4.019321 TGGCAAGTCAGGATAACTAAAGCT 60.019 41.667 0.00 0.00 0.00 3.74
5617 7464 5.188948 TGGCAAGTCAGGATAACTAAAGCTA 59.811 40.000 0.00 0.00 0.00 3.32
5618 7465 6.113411 GGCAAGTCAGGATAACTAAAGCTAA 58.887 40.000 0.00 0.00 0.00 3.09
5672 7538 9.660180 GTAGTTTCAGAAGGATCAAGTTAATCT 57.340 33.333 0.00 0.00 0.00 2.40
5690 7558 8.325046 AGTTAATCTCTAGGACAAAAGCTGATT 58.675 33.333 0.00 0.00 0.00 2.57
5719 7587 7.538678 GCGATGGCAATAACTTTATAATTCCAG 59.461 37.037 0.00 0.00 39.62 3.86
5733 7601 9.878667 TTTATAATTCCAGTGATTCGACTTACA 57.121 29.630 0.64 0.00 0.00 2.41
5742 7610 5.122396 AGTGATTCGACTTACATTGGCTTTC 59.878 40.000 0.64 0.00 0.00 2.62
5754 7622 5.965922 ACATTGGCTTTCCATTTAGTTAGC 58.034 37.500 0.00 0.00 43.05 3.09
5764 7632 5.289595 TCCATTTAGTTAGCGCATCTACAG 58.710 41.667 11.47 1.91 0.00 2.74
5768 7636 1.591594 TTAGCGCATCTACAGCCGC 60.592 57.895 11.47 0.00 33.77 6.53
5769 7637 2.291457 TTAGCGCATCTACAGCCGCA 62.291 55.000 11.47 0.00 35.21 5.69
5770 7638 2.087462 TAGCGCATCTACAGCCGCAT 62.087 55.000 11.47 0.00 35.21 4.73
5771 7639 1.664649 GCGCATCTACAGCCGCATA 60.665 57.895 0.30 0.00 33.78 3.14
5772 7640 1.891060 GCGCATCTACAGCCGCATAC 61.891 60.000 0.30 0.00 33.78 2.39
5773 7641 1.608966 CGCATCTACAGCCGCATACG 61.609 60.000 0.00 0.00 39.67 3.06
5774 7642 0.318699 GCATCTACAGCCGCATACGA 60.319 55.000 0.00 0.00 43.93 3.43
5775 7643 1.670087 GCATCTACAGCCGCATACGAT 60.670 52.381 0.00 0.00 43.93 3.73
5776 7644 2.415491 GCATCTACAGCCGCATACGATA 60.415 50.000 0.00 0.00 43.93 2.92
5779 7647 4.514781 TCTACAGCCGCATACGATAAAT 57.485 40.909 0.00 0.00 43.93 1.40
5780 7648 5.632244 TCTACAGCCGCATACGATAAATA 57.368 39.130 0.00 0.00 43.93 1.40
5781 7649 6.203808 TCTACAGCCGCATACGATAAATAT 57.796 37.500 0.00 0.00 43.93 1.28
5782 7650 6.033966 TCTACAGCCGCATACGATAAATATG 58.966 40.000 0.00 0.00 43.93 1.78
5783 7651 4.816392 ACAGCCGCATACGATAAATATGA 58.184 39.130 0.00 0.00 43.93 2.15
5784 7652 4.625742 ACAGCCGCATACGATAAATATGAC 59.374 41.667 0.00 0.00 43.93 3.06
5787 7655 3.869246 CCGCATACGATAAATATGACCCC 59.131 47.826 0.00 0.00 43.93 4.95
5788 7656 4.382685 CCGCATACGATAAATATGACCCCT 60.383 45.833 0.00 0.00 43.93 4.79
5790 7658 5.623596 CGCATACGATAAATATGACCCCTCA 60.624 44.000 0.00 0.00 43.93 3.86
5793 7661 7.148407 GCATACGATAAATATGACCCCTCAAAG 60.148 40.741 0.00 0.00 32.66 2.77
5794 7662 6.494666 ACGATAAATATGACCCCTCAAAGA 57.505 37.500 0.00 0.00 0.00 2.52
5795 7663 6.895782 ACGATAAATATGACCCCTCAAAGAA 58.104 36.000 0.00 0.00 0.00 2.52
5796 7664 7.343357 ACGATAAATATGACCCCTCAAAGAAA 58.657 34.615 0.00 0.00 0.00 2.52
5797 7665 7.832187 ACGATAAATATGACCCCTCAAAGAAAA 59.168 33.333 0.00 0.00 0.00 2.29
5798 7666 8.345565 CGATAAATATGACCCCTCAAAGAAAAG 58.654 37.037 0.00 0.00 0.00 2.27
5799 7667 6.857437 AAATATGACCCCTCAAAGAAAAGG 57.143 37.500 0.00 0.00 0.00 3.11
5803 7671 3.774144 CCCTCAAAGAAAAGGGCCT 57.226 52.632 0.00 0.00 45.63 5.19
5804 7672 1.260544 CCCTCAAAGAAAAGGGCCTG 58.739 55.000 6.92 0.00 45.63 4.85
5805 7673 1.260544 CCTCAAAGAAAAGGGCCTGG 58.739 55.000 6.92 0.00 0.00 4.45
5806 7674 1.481242 CCTCAAAGAAAAGGGCCTGGT 60.481 52.381 6.92 0.00 0.00 4.00
5807 7675 1.889170 CTCAAAGAAAAGGGCCTGGTC 59.111 52.381 6.92 7.84 0.00 4.02
5808 7676 1.216678 TCAAAGAAAAGGGCCTGGTCA 59.783 47.619 6.92 0.00 0.00 4.02
5809 7677 2.158325 TCAAAGAAAAGGGCCTGGTCAT 60.158 45.455 6.92 0.00 0.00 3.06
5810 7678 2.222227 AAGAAAAGGGCCTGGTCATC 57.778 50.000 6.92 1.19 0.00 2.92
5811 7679 0.332972 AGAAAAGGGCCTGGTCATCC 59.667 55.000 6.92 0.00 0.00 3.51
5812 7680 0.332972 GAAAAGGGCCTGGTCATCCT 59.667 55.000 6.92 0.00 34.23 3.24
5813 7681 0.786435 AAAAGGGCCTGGTCATCCTT 59.214 50.000 6.92 3.97 40.94 3.36
5814 7682 0.786435 AAAGGGCCTGGTCATCCTTT 59.214 50.000 6.92 14.85 42.70 3.11
5815 7683 1.681229 AAGGGCCTGGTCATCCTTTA 58.319 50.000 6.92 0.00 36.30 1.85
5816 7684 1.912862 AGGGCCTGGTCATCCTTTAT 58.087 50.000 4.50 0.00 34.23 1.40
5818 7686 2.587307 AGGGCCTGGTCATCCTTTATTT 59.413 45.455 4.50 0.00 34.23 1.40
5819 7687 3.012844 AGGGCCTGGTCATCCTTTATTTT 59.987 43.478 4.50 0.00 34.23 1.82
5820 7688 3.132824 GGGCCTGGTCATCCTTTATTTTG 59.867 47.826 0.84 0.00 34.23 2.44
5821 7689 3.430790 GGCCTGGTCATCCTTTATTTTGC 60.431 47.826 0.00 0.00 34.23 3.68
5822 7690 3.195396 GCCTGGTCATCCTTTATTTTGCA 59.805 43.478 0.00 0.00 34.23 4.08
5823 7691 4.141869 GCCTGGTCATCCTTTATTTTGCAT 60.142 41.667 0.00 0.00 34.23 3.96
5824 7692 5.627503 GCCTGGTCATCCTTTATTTTGCATT 60.628 40.000 0.00 0.00 34.23 3.56
5826 7694 6.314400 CCTGGTCATCCTTTATTTTGCATTTG 59.686 38.462 0.00 0.00 34.23 2.32
5827 7695 6.767456 TGGTCATCCTTTATTTTGCATTTGT 58.233 32.000 0.00 0.00 34.23 2.83
5828 7696 7.222872 TGGTCATCCTTTATTTTGCATTTGTT 58.777 30.769 0.00 0.00 34.23 2.83
5829 7697 7.172875 TGGTCATCCTTTATTTTGCATTTGTTG 59.827 33.333 0.00 0.00 34.23 3.33
5845 7713 6.550843 CATTTGTTGCAATCGTATACCAGAA 58.449 36.000 0.59 0.00 0.00 3.02
5846 7714 6.751514 TTTGTTGCAATCGTATACCAGAAT 57.248 33.333 0.59 0.00 0.00 2.40
5847 7715 6.751514 TTGTTGCAATCGTATACCAGAATT 57.248 33.333 0.59 0.00 0.00 2.17
5848 7716 6.751514 TGTTGCAATCGTATACCAGAATTT 57.248 33.333 0.59 0.00 0.00 1.82
5849 7717 6.550843 TGTTGCAATCGTATACCAGAATTTG 58.449 36.000 0.59 0.00 0.00 2.32
5850 7718 6.372937 TGTTGCAATCGTATACCAGAATTTGA 59.627 34.615 0.59 0.00 0.00 2.69
5852 7720 8.556194 GTTGCAATCGTATACCAGAATTTGATA 58.444 33.333 0.59 0.00 0.00 2.15
5853 7721 8.083462 TGCAATCGTATACCAGAATTTGATAC 57.917 34.615 0.00 0.00 0.00 2.24
5854 7722 7.172532 TGCAATCGTATACCAGAATTTGATACC 59.827 37.037 0.00 0.00 0.00 2.73
5855 7723 7.387948 GCAATCGTATACCAGAATTTGATACCT 59.612 37.037 0.00 0.00 0.00 3.08
5856 7724 8.926710 CAATCGTATACCAGAATTTGATACCTC 58.073 37.037 0.00 0.00 0.00 3.85
5857 7725 7.591421 TCGTATACCAGAATTTGATACCTCA 57.409 36.000 0.00 0.00 0.00 3.86
5858 7726 8.014070 TCGTATACCAGAATTTGATACCTCAA 57.986 34.615 0.00 0.00 39.62 3.02
5873 7741 2.769663 ACCTCAAATCCATACTACGCCA 59.230 45.455 0.00 0.00 0.00 5.69
5874 7742 3.391296 ACCTCAAATCCATACTACGCCAT 59.609 43.478 0.00 0.00 0.00 4.40
5875 7743 3.748048 CCTCAAATCCATACTACGCCATG 59.252 47.826 0.00 0.00 0.00 3.66
5876 7744 4.380531 CTCAAATCCATACTACGCCATGT 58.619 43.478 0.00 0.00 0.00 3.21
5877 7745 5.510690 CCTCAAATCCATACTACGCCATGTA 60.511 44.000 0.00 0.00 0.00 2.29
5878 7746 5.919755 TCAAATCCATACTACGCCATGTAA 58.080 37.500 0.00 0.00 31.20 2.41
5879 7747 6.530120 TCAAATCCATACTACGCCATGTAAT 58.470 36.000 0.00 0.00 31.20 1.89
5880 7748 6.995686 TCAAATCCATACTACGCCATGTAATT 59.004 34.615 0.00 0.00 31.20 1.40
5881 7749 8.151596 TCAAATCCATACTACGCCATGTAATTA 58.848 33.333 0.00 0.00 31.20 1.40
5882 7750 7.900782 AATCCATACTACGCCATGTAATTAC 57.099 36.000 8.75 8.75 31.20 1.89
5883 7751 5.463286 TCCATACTACGCCATGTAATTACG 58.537 41.667 10.92 1.30 31.20 3.18
5884 7752 5.009911 TCCATACTACGCCATGTAATTACGT 59.990 40.000 10.92 7.81 38.62 3.57
5885 7753 6.206438 TCCATACTACGCCATGTAATTACGTA 59.794 38.462 9.98 7.41 36.73 3.57
5886 7754 6.306356 CCATACTACGCCATGTAATTACGTAC 59.694 42.308 9.98 5.22 36.73 3.67
5889 7757 7.206981 ACTACGCCATGTAATTACGTACTAT 57.793 36.000 9.98 0.00 36.73 2.12
5890 7758 7.301054 ACTACGCCATGTAATTACGTACTATC 58.699 38.462 9.98 0.00 36.73 2.08
5891 7759 6.075762 ACGCCATGTAATTACGTACTATCA 57.924 37.500 9.98 0.00 33.97 2.15
5892 7760 6.506147 ACGCCATGTAATTACGTACTATCAA 58.494 36.000 9.98 0.00 33.97 2.57
5893 7761 6.979817 ACGCCATGTAATTACGTACTATCAAA 59.020 34.615 9.98 0.00 33.97 2.69
5894 7762 7.492020 ACGCCATGTAATTACGTACTATCAAAA 59.508 33.333 9.98 0.00 33.97 2.44
5895 7763 7.790673 CGCCATGTAATTACGTACTATCAAAAC 59.209 37.037 9.98 0.00 0.00 2.43
5896 7764 8.066000 GCCATGTAATTACGTACTATCAAAACC 58.934 37.037 9.98 0.00 0.00 3.27
5899 7767 8.188531 TGTAATTACGTACTATCAAAACCTGC 57.811 34.615 10.92 0.00 0.00 4.85
5905 7989 7.303634 ACGTACTATCAAAACCTGCTTAATG 57.696 36.000 0.00 0.00 0.00 1.90
5936 8020 8.692110 ATTTAATAATATGGTTGCATGCATCG 57.308 30.769 23.37 0.00 0.00 3.84
5938 8022 6.519679 AATAATATGGTTGCATGCATCGAT 57.480 33.333 23.37 23.71 0.00 3.59
5941 8025 1.461559 TGGTTGCATGCATCGATTGA 58.538 45.000 23.37 0.58 0.00 2.57
5951 8035 0.873054 CATCGATTGATGCAGAGGCC 59.127 55.000 10.05 0.00 45.06 5.19
5952 8036 0.602106 ATCGATTGATGCAGAGGCCG 60.602 55.000 0.00 0.00 40.13 6.13
5953 8037 1.227350 CGATTGATGCAGAGGCCGA 60.227 57.895 0.00 0.00 40.13 5.54
5954 8038 1.220169 CGATTGATGCAGAGGCCGAG 61.220 60.000 0.00 0.00 40.13 4.63
5955 8039 0.883814 GATTGATGCAGAGGCCGAGG 60.884 60.000 0.00 0.00 40.13 4.63
5956 8040 1.630126 ATTGATGCAGAGGCCGAGGT 61.630 55.000 0.00 0.00 40.13 3.85
5958 8042 0.975556 TGATGCAGAGGCCGAGGTAA 60.976 55.000 0.00 0.00 40.13 2.85
5959 8043 0.394565 GATGCAGAGGCCGAGGTAAT 59.605 55.000 0.00 0.00 40.13 1.89
5960 8044 0.394565 ATGCAGAGGCCGAGGTAATC 59.605 55.000 0.00 0.00 40.13 1.75
5961 8045 1.069935 GCAGAGGCCGAGGTAATCC 59.930 63.158 0.00 0.00 0.00 3.01
6003 8105 7.203255 ACTTGAAACATGCTTAAACTACTCC 57.797 36.000 0.00 0.00 0.00 3.85
6005 8107 7.173390 ACTTGAAACATGCTTAAACTACTCCTC 59.827 37.037 0.00 0.00 0.00 3.71
6009 8111 3.482722 TGCTTAAACTACTCCTCGTCG 57.517 47.619 0.00 0.00 0.00 5.12
6023 8125 4.844884 TCCTCGTCGGAGATGTATATGAT 58.155 43.478 0.00 0.00 45.22 2.45
6026 8128 5.585047 CCTCGTCGGAGATGTATATGATGTA 59.415 44.000 0.00 0.00 45.22 2.29
6029 8131 7.325694 TCGTCGGAGATGTATATGATGTACTA 58.674 38.462 1.14 0.00 45.22 1.82
6030 8132 7.820872 TCGTCGGAGATGTATATGATGTACTAA 59.179 37.037 1.14 0.00 45.22 2.24
6034 8136 9.723447 CGGAGATGTATATGATGTACTAATGTC 57.277 37.037 1.14 0.00 0.00 3.06
6185 8287 9.802039 AAAGTGGACATAGAAATGTAGGTTTTA 57.198 29.630 0.00 0.00 46.49 1.52
6187 8289 9.975218 AGTGGACATAGAAATGTAGGTTTTAAT 57.025 29.630 0.00 0.00 46.49 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 6.039616 GTGCTTTAAGATCTCTTCATCGTCT 58.960 40.000 0.00 0.00 37.40 4.18
46 47 4.801330 TCCGTGCTTTAAGATCTCTTCA 57.199 40.909 0.00 0.00 37.40 3.02
53 54 4.833390 AGCTAACTTCCGTGCTTTAAGAT 58.167 39.130 0.00 0.00 30.96 2.40
76 81 3.071023 TCTTCCTCGATTGTCTGGTGTTT 59.929 43.478 0.00 0.00 0.00 2.83
87 92 2.234908 CACAGTCCCTTCTTCCTCGATT 59.765 50.000 0.00 0.00 0.00 3.34
137 142 2.517402 GGGTTGTTCACGGTGGCA 60.517 61.111 8.50 5.32 0.00 4.92
165 170 2.093235 GCCTGCTAGGTCTCTTCATTGT 60.093 50.000 4.45 0.00 37.80 2.71
180 185 4.410228 TCACAATATTAAGAGGAGCCTGCT 59.590 41.667 0.00 0.00 0.00 4.24
181 186 4.708177 TCACAATATTAAGAGGAGCCTGC 58.292 43.478 0.00 0.00 0.00 4.85
182 187 7.500227 TGAAATCACAATATTAAGAGGAGCCTG 59.500 37.037 0.00 0.00 0.00 4.85
271 276 5.143660 TCATTTGTTTCAGAATACAACGCG 58.856 37.500 3.53 3.53 34.25 6.01
308 313 5.044558 GGTCAGCTAGGATTTCTTAAGTCG 58.955 45.833 1.63 0.00 0.00 4.18
421 427 7.761704 AGTGTCTGCATCTGTACTGTATTAAAG 59.238 37.037 0.00 0.00 0.00 1.85
427 433 4.079253 TGAGTGTCTGCATCTGTACTGTA 58.921 43.478 0.00 0.00 0.00 2.74
438 444 2.289569 TGCATGTGTATGAGTGTCTGCA 60.290 45.455 0.00 0.00 36.36 4.41
454 460 6.102075 CATAGGGATGAGTGCATGTGCATG 62.102 50.000 11.25 7.74 43.69 4.06
463 469 3.406764 GTGGATTCATAGGGATGAGTGC 58.593 50.000 0.00 0.00 43.03 4.40
481 487 1.010419 GGTAGGTTGTACGTGCGTGG 61.010 60.000 7.55 0.00 0.00 4.94
490 496 3.408157 TGCTCATAGGGGTAGGTTGTA 57.592 47.619 0.00 0.00 0.00 2.41
499 505 4.019858 TCTCTCGAATATGCTCATAGGGG 58.980 47.826 0.00 0.00 0.00 4.79
500 506 5.850557 ATCTCTCGAATATGCTCATAGGG 57.149 43.478 0.00 0.00 0.00 3.53
511 517 4.736126 TGTTGGCTCAATCTCTCGAATA 57.264 40.909 0.00 0.00 0.00 1.75
522 528 5.072055 TCTCAAGATGATTTGTTGGCTCAA 58.928 37.500 0.00 0.00 0.00 3.02
529 535 8.636213 ACTTTGTCATTCTCAAGATGATTTGTT 58.364 29.630 0.00 0.00 0.00 2.83
533 539 6.402983 GCGACTTTGTCATTCTCAAGATGATT 60.403 38.462 0.00 0.00 32.09 2.57
546 553 2.159572 GCGTTTATGGCGACTTTGTCAT 60.160 45.455 0.00 0.00 37.96 3.06
571 578 5.111293 GGAAAAATATTCCCGTCGACTACA 58.889 41.667 14.70 0.00 32.48 2.74
586 593 2.420722 CAGCGCGTTTAGGGGAAAAATA 59.579 45.455 8.43 0.00 0.00 1.40
587 594 1.201414 CAGCGCGTTTAGGGGAAAAAT 59.799 47.619 8.43 0.00 0.00 1.82
589 596 1.238625 CCAGCGCGTTTAGGGGAAAA 61.239 55.000 8.43 0.00 0.00 2.29
591 598 2.046700 CCAGCGCGTTTAGGGGAA 60.047 61.111 8.43 0.00 0.00 3.97
593 600 2.046700 TTCCAGCGCGTTTAGGGG 60.047 61.111 8.43 0.00 0.00 4.79
594 601 2.106683 CCTTCCAGCGCGTTTAGGG 61.107 63.158 8.43 0.00 0.00 3.53
597 604 0.889994 TAGACCTTCCAGCGCGTTTA 59.110 50.000 8.43 0.00 0.00 2.01
598 605 0.389948 CTAGACCTTCCAGCGCGTTT 60.390 55.000 8.43 0.00 0.00 3.60
599 606 1.215647 CTAGACCTTCCAGCGCGTT 59.784 57.895 8.43 0.00 0.00 4.84
600 607 1.248785 TTCTAGACCTTCCAGCGCGT 61.249 55.000 8.43 0.00 0.00 6.01
601 608 0.103208 ATTCTAGACCTTCCAGCGCG 59.897 55.000 0.00 0.00 0.00 6.86
602 609 3.454371 TTATTCTAGACCTTCCAGCGC 57.546 47.619 0.00 0.00 0.00 5.92
606 613 7.749377 TTCTGGATTTATTCTAGACCTTCCA 57.251 36.000 0.00 0.69 41.22 3.53
616 630 9.300681 TGACTCACATTTTTCTGGATTTATTCT 57.699 29.630 0.00 0.00 0.00 2.40
632 646 3.096852 TCTACGGGTCATGACTCACATT 58.903 45.455 25.06 8.71 37.07 2.71
636 650 3.298686 AGATCTACGGGTCATGACTCA 57.701 47.619 25.06 6.23 0.00 3.41
647 661 9.916397 GAAAATAAATTGTGTGTAGATCTACGG 57.084 33.333 24.32 0.00 38.85 4.02
692 707 7.444487 AGTTGTGTTTTTGGTTCTCTATAGGAC 59.556 37.037 0.00 0.00 0.00 3.85
949 964 0.174617 GGGGCTAGCTGCGATAGATC 59.825 60.000 15.72 0.00 44.05 2.75
989 1004 0.474184 AGAAGCCATTATGGGACGGG 59.526 55.000 13.67 0.00 38.19 5.28
1011 1029 0.108019 AGAACCCCAACCAGTCGTTC 59.892 55.000 0.00 0.00 34.40 3.95
1047 1065 2.359850 TGATGCGGCTGTGGGTTC 60.360 61.111 0.00 0.00 0.00 3.62
1109 1127 0.249911 CGTGGGTAGGCCATAGAAGC 60.250 60.000 5.01 0.00 36.17 3.86
1155 1173 0.393402 GCTGATGATGACCTGGCACA 60.393 55.000 0.00 0.00 0.00 4.57
1164 1182 2.037641 CCCGTATGAAGGCTGATGATGA 59.962 50.000 0.00 0.00 0.00 2.92
1165 1183 2.037641 TCCCGTATGAAGGCTGATGATG 59.962 50.000 0.00 0.00 0.00 3.07
1166 1184 2.329267 TCCCGTATGAAGGCTGATGAT 58.671 47.619 0.00 0.00 0.00 2.45
1220 1238 1.257743 CTTCTTCCTCTCACCGTGGA 58.742 55.000 0.00 0.00 33.62 4.02
1256 1274 1.453155 AACATTGGATCGGAGTGCAC 58.547 50.000 9.40 9.40 0.00 4.57
1286 1305 6.514063 GGGAGAAGTGATACATACCTACAAC 58.486 44.000 0.00 0.00 0.00 3.32
1292 1311 4.098960 TGAACGGGAGAAGTGATACATACC 59.901 45.833 0.00 0.00 0.00 2.73
1297 1316 3.056035 ACCTTGAACGGGAGAAGTGATAC 60.056 47.826 0.00 0.00 0.00 2.24
1480 1499 0.599204 GGAGACGAACGAGTTGCCAA 60.599 55.000 0.14 0.00 0.00 4.52
1517 1536 0.250295 CACCGGAGAACAAGAAGCCA 60.250 55.000 9.46 0.00 0.00 4.75
1569 1588 1.001641 GCTCCATGGTGTTGCTCCT 60.002 57.895 12.58 0.00 0.00 3.69
2019 2044 9.436957 AATGTGAAGAAATCGACTAGTAACAAT 57.563 29.630 0.00 0.00 0.00 2.71
2020 2045 8.827177 AATGTGAAGAAATCGACTAGTAACAA 57.173 30.769 0.00 0.00 0.00 2.83
2021 2046 9.917129 TTAATGTGAAGAAATCGACTAGTAACA 57.083 29.630 0.00 0.00 0.00 2.41
2028 2053 8.783093 TCAACAATTAATGTGAAGAAATCGACT 58.217 29.630 0.00 0.00 42.99 4.18
2031 2056 9.013490 GGATCAACAATTAATGTGAAGAAATCG 57.987 33.333 0.00 0.00 42.99 3.34
2084 2112 2.017049 GCCAGTGTACTAGCCCAATTG 58.983 52.381 0.00 0.00 0.00 2.32
2102 2130 2.204237 GATCGCCCAATTTGAAATGCC 58.796 47.619 0.00 0.00 0.00 4.40
2179 2211 6.366332 CACGAAATCAAAGTACTCTAGCTTGT 59.634 38.462 0.00 0.00 0.00 3.16
2185 2217 5.168569 CAGGCACGAAATCAAAGTACTCTA 58.831 41.667 0.00 0.00 0.00 2.43
2186 2218 3.997021 CAGGCACGAAATCAAAGTACTCT 59.003 43.478 0.00 0.00 0.00 3.24
2187 2219 3.746492 ACAGGCACGAAATCAAAGTACTC 59.254 43.478 0.00 0.00 0.00 2.59
2188 2220 3.740115 ACAGGCACGAAATCAAAGTACT 58.260 40.909 0.00 0.00 0.00 2.73
2189 2221 5.600908 TTACAGGCACGAAATCAAAGTAC 57.399 39.130 0.00 0.00 0.00 2.73
2201 2233 3.848272 AATCACCAAATTACAGGCACG 57.152 42.857 0.00 0.00 0.00 5.34
2309 2586 4.096382 CCTAACTCGTGGATGAAAAATGGG 59.904 45.833 0.00 0.00 0.00 4.00
2317 2594 5.479375 AGTCTTTTACCTAACTCGTGGATGA 59.521 40.000 0.00 0.00 0.00 2.92
2325 2602 6.427242 CAGGGTGAAAGTCTTTTACCTAACTC 59.573 42.308 28.70 17.03 45.65 3.01
2339 2616 9.528489 TTTATATCTTTTAAGCAGGGTGAAAGT 57.472 29.630 0.00 0.00 0.00 2.66
2356 2633 9.920946 ATGTATGTGGTGGTTCTTTTATATCTT 57.079 29.630 0.00 0.00 0.00 2.40
2360 2637 9.961264 TTGTATGTATGTGGTGGTTCTTTTATA 57.039 29.630 0.00 0.00 0.00 0.98
2379 2656 5.450412 CCTGTGCTTGAACTTTGTTGTATGT 60.450 40.000 0.00 0.00 0.00 2.29
2457 2738 6.271159 ACTTGGTGGCCCTTTCATTTTATTTA 59.729 34.615 0.00 0.00 0.00 1.40
2459 2740 4.597075 ACTTGGTGGCCCTTTCATTTTATT 59.403 37.500 0.00 0.00 0.00 1.40
2461 2742 3.323403 CACTTGGTGGCCCTTTCATTTTA 59.677 43.478 0.00 0.00 0.00 1.52
2465 2746 3.056213 CACTTGGTGGCCCTTTCAT 57.944 52.632 0.00 0.00 0.00 2.57
2466 2747 4.597032 CACTTGGTGGCCCTTTCA 57.403 55.556 0.00 0.00 0.00 2.69
2530 2815 0.890542 GGCATGATGGGCGCTGATTA 60.891 55.000 7.64 0.00 0.00 1.75
2531 2816 2.198287 GGCATGATGGGCGCTGATT 61.198 57.895 7.64 0.00 0.00 2.57
2538 2823 2.203337 TTAGGCGGCATGATGGGC 60.203 61.111 13.08 0.00 0.00 5.36
2662 4123 7.698550 GGTAGCTATAGTATGAATCATGTCGTG 59.301 40.741 5.91 0.00 0.00 4.35
2688 4149 8.373048 TCAAATTGTGTGGTAAGTACTAAGTG 57.627 34.615 0.00 0.00 0.00 3.16
2717 4178 8.557029 CGGAGAAAAAGAACAACACTTAATACT 58.443 33.333 0.00 0.00 0.00 2.12
2718 4179 7.801783 CCGGAGAAAAAGAACAACACTTAATAC 59.198 37.037 0.00 0.00 0.00 1.89
2719 4180 7.716123 TCCGGAGAAAAAGAACAACACTTAATA 59.284 33.333 0.00 0.00 0.00 0.98
2720 4181 6.544564 TCCGGAGAAAAAGAACAACACTTAAT 59.455 34.615 0.00 0.00 0.00 1.40
2721 4182 5.881443 TCCGGAGAAAAAGAACAACACTTAA 59.119 36.000 0.00 0.00 0.00 1.85
2722 4183 5.430007 TCCGGAGAAAAAGAACAACACTTA 58.570 37.500 0.00 0.00 0.00 2.24
2736 4197 7.841282 AGATATCATAAGAGTTCCGGAGAAA 57.159 36.000 3.34 0.00 32.58 2.52
2792 4253 9.742144 TTTAGTTATACCTCTTATTTTGGTGCA 57.258 29.630 0.00 0.00 35.48 4.57
2818 4279 5.013183 ACTTGGGTCAGCTAGAACAGTTAAT 59.987 40.000 0.00 0.00 34.85 1.40
2835 4296 2.830651 TTTGTGTTGGGTACTTGGGT 57.169 45.000 0.00 0.00 0.00 4.51
2836 4297 4.658063 TCTATTTGTGTTGGGTACTTGGG 58.342 43.478 0.00 0.00 0.00 4.12
2837 4298 7.065803 CACTATCTATTTGTGTTGGGTACTTGG 59.934 40.741 0.00 0.00 0.00 3.61
2838 4299 7.606456 ACACTATCTATTTGTGTTGGGTACTTG 59.394 37.037 0.00 0.00 41.45 3.16
2839 4300 7.606456 CACACTATCTATTTGTGTTGGGTACTT 59.394 37.037 0.00 0.00 42.19 2.24
2840 4301 7.103641 CACACTATCTATTTGTGTTGGGTACT 58.896 38.462 0.00 0.00 42.19 2.73
2841 4302 6.315393 CCACACTATCTATTTGTGTTGGGTAC 59.685 42.308 0.00 0.00 42.19 3.34
2842 4303 6.411376 CCACACTATCTATTTGTGTTGGGTA 58.589 40.000 0.00 0.00 42.19 3.69
2867 4328 7.592903 GTGTTTATCCAGAGAAAAAGCAAAGAG 59.407 37.037 0.00 0.00 0.00 2.85
2942 4405 8.680001 TGACTTTGTATTCATCATCCATTGAAG 58.320 33.333 0.00 0.00 38.03 3.02
2989 4454 9.434420 AAGAGTATGTTGATCAGAGAAAAAGAG 57.566 33.333 0.00 0.00 0.00 2.85
2991 4456 7.961827 GCAAGAGTATGTTGATCAGAGAAAAAG 59.038 37.037 0.00 0.00 42.84 2.27
3062 4531 6.985645 AGCACATTCAAAATGTACATGTTGTT 59.014 30.769 29.50 19.34 37.32 2.83
3230 4699 4.190772 CAATGGAGAGAGAAAGAGGAAGC 58.809 47.826 0.00 0.00 0.00 3.86
3287 4762 5.059404 AGGGAAACACAAGATAAAATGCG 57.941 39.130 0.00 0.00 0.00 4.73
3303 4778 2.106338 TCATGCAGAGTGTTGAGGGAAA 59.894 45.455 0.00 0.00 0.00 3.13
3306 4781 1.002888 AGTCATGCAGAGTGTTGAGGG 59.997 52.381 0.00 0.00 0.00 4.30
3343 4818 5.215252 AGGACAATACAGTATCATTCCCG 57.785 43.478 9.86 0.00 0.00 5.14
3383 4858 2.436173 AGAGAGTAAGGCAAGCATACCC 59.564 50.000 0.00 0.00 0.00 3.69
3618 5094 5.535333 AGGTTGAGATGTTTTGCAGAAATG 58.465 37.500 0.00 0.00 0.00 2.32
3619 5095 5.796424 AGGTTGAGATGTTTTGCAGAAAT 57.204 34.783 0.00 0.00 0.00 2.17
3762 5238 3.607987 GATGAACGTCGGCTCGCG 61.608 66.667 0.00 0.00 34.10 5.87
3765 5241 2.776312 TATGAGATGAACGTCGGCTC 57.224 50.000 0.00 0.00 0.00 4.70
3785 5261 9.214957 CCATTTACTTGTGTGATAGTAGTTCAA 57.785 33.333 0.00 0.00 0.00 2.69
3831 5309 2.083774 TCCTGCATTTGTCGGATCAAC 58.916 47.619 0.00 0.00 0.00 3.18
4140 5625 0.555769 TCCTTGTTTCCTGCAACCCT 59.444 50.000 0.00 0.00 0.00 4.34
4219 5704 7.855784 TCATTAGTCCAGCAATTAGATAGGA 57.144 36.000 0.00 0.00 0.00 2.94
4419 5904 8.575649 AAAAGGTACATTTGGGACATAGTTAG 57.424 34.615 6.23 0.00 39.30 2.34
4470 5955 4.039609 CCATGCCAAGGTTTTCTCTTTTCT 59.960 41.667 0.00 0.00 0.00 2.52
4471 5956 4.039124 TCCATGCCAAGGTTTTCTCTTTTC 59.961 41.667 0.00 0.00 0.00 2.29
4472 5957 3.966665 TCCATGCCAAGGTTTTCTCTTTT 59.033 39.130 0.00 0.00 0.00 2.27
4473 5958 3.575687 CTCCATGCCAAGGTTTTCTCTTT 59.424 43.478 0.00 0.00 0.00 2.52
4474 5959 3.160269 CTCCATGCCAAGGTTTTCTCTT 58.840 45.455 0.00 0.00 0.00 2.85
4475 5960 2.108952 ACTCCATGCCAAGGTTTTCTCT 59.891 45.455 0.00 0.00 0.00 3.10
4476 5961 2.489722 GACTCCATGCCAAGGTTTTCTC 59.510 50.000 0.00 0.00 0.00 2.87
4590 6075 7.264221 TGCATGCATATGTGACGATGTATATA 58.736 34.615 18.46 0.00 36.65 0.86
4593 6078 4.317488 TGCATGCATATGTGACGATGTAT 58.683 39.130 18.46 0.00 36.65 2.29
4594 6079 3.726607 TGCATGCATATGTGACGATGTA 58.273 40.909 18.46 0.00 36.65 2.29
4595 6080 2.563702 TGCATGCATATGTGACGATGT 58.436 42.857 18.46 0.00 36.65 3.06
4598 6083 2.944349 ACATTGCATGCATATGTGACGA 59.056 40.909 30.47 14.24 36.65 4.20
4599 6084 3.040099 CACATTGCATGCATATGTGACG 58.960 45.455 38.68 26.37 41.82 4.35
4600 6085 3.377439 CCACATTGCATGCATATGTGAC 58.623 45.455 40.59 13.27 41.82 3.67
4601 6086 2.362717 CCCACATTGCATGCATATGTGA 59.637 45.455 40.59 25.00 41.82 3.58
4602 6087 2.547007 CCCCACATTGCATGCATATGTG 60.547 50.000 36.98 36.98 40.62 3.21
4606 6091 2.823587 CCCCCACATTGCATGCATA 58.176 52.632 23.37 12.94 0.00 3.14
4630 6115 1.609320 GCATGGTTAGCTAGCTAGGGC 60.609 57.143 23.03 18.21 39.06 5.19
4631 6116 1.694150 TGCATGGTTAGCTAGCTAGGG 59.306 52.381 23.03 13.32 0.00 3.53
4632 6117 3.594134 GATGCATGGTTAGCTAGCTAGG 58.406 50.000 23.03 8.46 0.00 3.02
4633 6118 3.260380 AGGATGCATGGTTAGCTAGCTAG 59.740 47.826 23.03 16.84 0.00 3.42
4634 6119 3.242867 AGGATGCATGGTTAGCTAGCTA 58.757 45.455 20.67 20.67 0.00 3.32
4635 6120 2.053244 AGGATGCATGGTTAGCTAGCT 58.947 47.619 23.12 23.12 0.00 3.32
4636 6121 2.557920 AGGATGCATGGTTAGCTAGC 57.442 50.000 2.46 6.62 0.00 3.42
4637 6122 6.047511 AGATTAGGATGCATGGTTAGCTAG 57.952 41.667 2.46 0.00 0.00 3.42
4638 6123 5.336770 CGAGATTAGGATGCATGGTTAGCTA 60.337 44.000 2.46 0.00 0.00 3.32
4639 6124 4.562347 CGAGATTAGGATGCATGGTTAGCT 60.562 45.833 2.46 0.00 0.00 3.32
4640 6125 3.681897 CGAGATTAGGATGCATGGTTAGC 59.318 47.826 2.46 0.00 0.00 3.09
4641 6126 4.887748 ACGAGATTAGGATGCATGGTTAG 58.112 43.478 2.46 0.00 0.00 2.34
4642 6127 4.955811 ACGAGATTAGGATGCATGGTTA 57.044 40.909 2.46 0.00 0.00 2.85
4643 6128 3.845781 ACGAGATTAGGATGCATGGTT 57.154 42.857 2.46 0.00 0.00 3.67
4644 6129 3.641436 TGTACGAGATTAGGATGCATGGT 59.359 43.478 2.46 0.00 0.00 3.55
4645 6130 4.257267 TGTACGAGATTAGGATGCATGG 57.743 45.455 2.46 0.00 0.00 3.66
4666 6492 1.828660 CTCCTCGGTGCCTACGGAT 60.829 63.158 0.00 0.00 35.87 4.18
4732 6558 1.568025 GAAGTTGGTGACGGCGTTC 59.432 57.895 16.19 10.87 0.00 3.95
4824 6656 0.467384 ATGATCAGCGACCTCCTTGG 59.533 55.000 0.09 0.00 42.93 3.61
4833 6665 0.758310 AGCCTCTGGATGATCAGCGA 60.758 55.000 4.63 0.00 34.91 4.93
4951 6783 1.660560 GCTGCTGGAATGCGATGGTT 61.661 55.000 0.00 0.00 35.36 3.67
5203 7044 1.678970 GTGCCCCTGTTCATCCACC 60.679 63.158 0.00 0.00 0.00 4.61
5251 7092 2.298158 CTTCGTCCCCGTAGCTGCAT 62.298 60.000 1.02 0.00 35.01 3.96
5287 7128 2.972505 GCCATGGCATCGTACCCG 60.973 66.667 32.08 0.00 41.49 5.28
5342 7183 0.167470 CTCGCAATGCTCACAGTTGG 59.833 55.000 2.94 0.00 0.00 3.77
5449 7290 4.033990 TCGACTGTCTTGCTAGCTAATG 57.966 45.455 17.23 3.54 0.00 1.90
5460 7301 5.272283 TGACCTAACTTTTCGACTGTCTT 57.728 39.130 6.21 0.00 0.00 3.01
5464 7305 3.244112 ACCCTGACCTAACTTTTCGACTG 60.244 47.826 0.00 0.00 0.00 3.51
5466 7307 3.397849 ACCCTGACCTAACTTTTCGAC 57.602 47.619 0.00 0.00 0.00 4.20
5471 7312 4.623171 CGAGCAATACCCTGACCTAACTTT 60.623 45.833 0.00 0.00 0.00 2.66
5472 7313 3.118738 CGAGCAATACCCTGACCTAACTT 60.119 47.826 0.00 0.00 0.00 2.66
5487 7329 1.064803 TGAAACGCAACAACGAGCAAT 59.935 42.857 0.00 0.00 36.70 3.56
5507 7353 2.038975 TAGCCGGAACCCTGAGCT 59.961 61.111 5.05 0.00 37.58 4.09
5551 7398 0.874390 CATGCACAGCACCTTTACGT 59.126 50.000 0.00 0.00 43.04 3.57
5615 7462 3.733337 ACAGCAAGTCAGGACAAGTTAG 58.267 45.455 1.84 0.00 0.00 2.34
5616 7463 3.838244 ACAGCAAGTCAGGACAAGTTA 57.162 42.857 1.84 0.00 0.00 2.24
5617 7464 2.717639 ACAGCAAGTCAGGACAAGTT 57.282 45.000 1.84 0.00 0.00 2.66
5618 7465 2.717639 AACAGCAAGTCAGGACAAGT 57.282 45.000 1.84 0.00 0.00 3.16
5672 7538 3.753272 GCACAATCAGCTTTTGTCCTAGA 59.247 43.478 8.50 0.00 35.18 2.43
5710 7578 8.830580 CAATGTAAGTCGAATCACTGGAATTAT 58.169 33.333 0.00 0.00 0.00 1.28
5719 7587 4.946784 AAGCCAATGTAAGTCGAATCAC 57.053 40.909 0.00 0.00 0.00 3.06
5742 7610 4.084328 GCTGTAGATGCGCTAACTAAATGG 60.084 45.833 9.73 2.76 0.00 3.16
5754 7622 1.608966 CGTATGCGGCTGTAGATGCG 61.609 60.000 0.00 0.00 0.00 4.73
5764 7632 3.308866 GGGTCATATTTATCGTATGCGGC 59.691 47.826 2.62 0.00 38.89 6.53
5768 7636 8.094548 TCTTTGAGGGGTCATATTTATCGTATG 58.905 37.037 0.00 0.00 0.00 2.39
5769 7637 8.202461 TCTTTGAGGGGTCATATTTATCGTAT 57.798 34.615 0.00 0.00 0.00 3.06
5770 7638 7.606135 TCTTTGAGGGGTCATATTTATCGTA 57.394 36.000 0.00 0.00 0.00 3.43
5771 7639 6.494666 TCTTTGAGGGGTCATATTTATCGT 57.505 37.500 0.00 0.00 0.00 3.73
5772 7640 7.801716 TTTCTTTGAGGGGTCATATTTATCG 57.198 36.000 0.00 0.00 0.00 2.92
5773 7641 8.633561 CCTTTTCTTTGAGGGGTCATATTTATC 58.366 37.037 0.00 0.00 0.00 1.75
5774 7642 8.539117 CCTTTTCTTTGAGGGGTCATATTTAT 57.461 34.615 0.00 0.00 0.00 1.40
5775 7643 7.954666 CCTTTTCTTTGAGGGGTCATATTTA 57.045 36.000 0.00 0.00 0.00 1.40
5776 7644 6.857437 CCTTTTCTTTGAGGGGTCATATTT 57.143 37.500 0.00 0.00 0.00 1.40
5787 7655 1.889170 GACCAGGCCCTTTTCTTTGAG 59.111 52.381 0.00 0.00 0.00 3.02
5788 7656 1.216678 TGACCAGGCCCTTTTCTTTGA 59.783 47.619 0.00 0.00 0.00 2.69
5790 7658 2.529632 GATGACCAGGCCCTTTTCTTT 58.470 47.619 0.00 0.00 0.00 2.52
5793 7661 0.332972 AGGATGACCAGGCCCTTTTC 59.667 55.000 0.00 0.00 38.94 2.29
5794 7662 0.786435 AAGGATGACCAGGCCCTTTT 59.214 50.000 0.00 0.00 35.64 2.27
5795 7663 0.786435 AAAGGATGACCAGGCCCTTT 59.214 50.000 0.00 9.00 42.37 3.11
5796 7664 1.681229 TAAAGGATGACCAGGCCCTT 58.319 50.000 0.00 0.00 40.46 3.95
5797 7665 1.912862 ATAAAGGATGACCAGGCCCT 58.087 50.000 0.00 0.00 38.94 5.19
5798 7666 2.755952 AATAAAGGATGACCAGGCCC 57.244 50.000 0.00 0.00 38.94 5.80
5799 7667 3.430790 GCAAAATAAAGGATGACCAGGCC 60.431 47.826 0.00 0.00 38.94 5.19
5800 7668 3.195396 TGCAAAATAAAGGATGACCAGGC 59.805 43.478 0.00 0.00 38.94 4.85
5801 7669 5.603170 ATGCAAAATAAAGGATGACCAGG 57.397 39.130 0.00 0.00 38.94 4.45
5803 7671 6.767456 ACAAATGCAAAATAAAGGATGACCA 58.233 32.000 0.00 0.00 38.94 4.02
5804 7672 7.520686 CAACAAATGCAAAATAAAGGATGACC 58.479 34.615 0.00 0.00 0.00 4.02
5821 7689 6.117911 TCTGGTATACGATTGCAACAAATG 57.882 37.500 0.00 0.00 0.00 2.32
5822 7690 6.751514 TTCTGGTATACGATTGCAACAAAT 57.248 33.333 0.00 0.00 0.00 2.32
5823 7691 6.751514 ATTCTGGTATACGATTGCAACAAA 57.248 33.333 0.00 0.00 0.00 2.83
5824 7692 6.751514 AATTCTGGTATACGATTGCAACAA 57.248 33.333 0.00 0.00 0.00 2.83
5826 7694 6.781138 TCAAATTCTGGTATACGATTGCAAC 58.219 36.000 0.00 0.00 0.00 4.17
5827 7695 6.993786 TCAAATTCTGGTATACGATTGCAA 57.006 33.333 0.00 0.00 0.00 4.08
5828 7696 7.172532 GGTATCAAATTCTGGTATACGATTGCA 59.827 37.037 0.00 0.00 0.00 4.08
5829 7697 7.387948 AGGTATCAAATTCTGGTATACGATTGC 59.612 37.037 0.00 0.00 0.00 3.56
5831 7699 8.647796 TGAGGTATCAAATTCTGGTATACGATT 58.352 33.333 0.00 0.00 30.61 3.34
5847 7715 6.220930 GCGTAGTATGGATTTGAGGTATCAA 58.779 40.000 0.00 0.00 43.72 2.57
5848 7716 5.279306 GGCGTAGTATGGATTTGAGGTATCA 60.279 44.000 0.00 0.00 0.00 2.15
5849 7717 5.169295 GGCGTAGTATGGATTTGAGGTATC 58.831 45.833 0.00 0.00 0.00 2.24
5850 7718 4.591498 TGGCGTAGTATGGATTTGAGGTAT 59.409 41.667 0.00 0.00 0.00 2.73
5852 7720 2.769663 TGGCGTAGTATGGATTTGAGGT 59.230 45.455 0.00 0.00 0.00 3.85
5853 7721 3.469008 TGGCGTAGTATGGATTTGAGG 57.531 47.619 0.00 0.00 0.00 3.86
5854 7722 4.380531 ACATGGCGTAGTATGGATTTGAG 58.619 43.478 0.00 0.00 0.00 3.02
5855 7723 4.415881 ACATGGCGTAGTATGGATTTGA 57.584 40.909 0.00 0.00 0.00 2.69
5856 7724 6.801539 ATTACATGGCGTAGTATGGATTTG 57.198 37.500 0.00 0.00 0.00 2.32
5857 7725 7.117236 CGTAATTACATGGCGTAGTATGGATTT 59.883 37.037 15.67 0.00 0.00 2.17
5858 7726 6.588756 CGTAATTACATGGCGTAGTATGGATT 59.411 38.462 15.67 0.00 0.00 3.01
5859 7727 6.097356 CGTAATTACATGGCGTAGTATGGAT 58.903 40.000 15.67 0.00 0.00 3.41
5860 7728 5.009911 ACGTAATTACATGGCGTAGTATGGA 59.990 40.000 15.67 0.00 33.85 3.41
5862 7730 7.080099 AGTACGTAATTACATGGCGTAGTATG 58.920 38.462 15.67 0.00 39.10 2.39
5863 7731 7.206981 AGTACGTAATTACATGGCGTAGTAT 57.793 36.000 15.67 0.00 39.10 2.12
5864 7732 6.618287 AGTACGTAATTACATGGCGTAGTA 57.382 37.500 15.67 4.42 39.10 1.82
5865 7733 5.505173 AGTACGTAATTACATGGCGTAGT 57.495 39.130 15.67 10.74 38.45 2.73
5866 7734 7.300320 TGATAGTACGTAATTACATGGCGTAG 58.700 38.462 15.67 0.00 38.45 3.51
5867 7735 7.200778 TGATAGTACGTAATTACATGGCGTA 57.799 36.000 15.67 8.50 37.05 4.42
5868 7736 6.075762 TGATAGTACGTAATTACATGGCGT 57.924 37.500 15.67 9.43 39.23 5.68
5869 7737 6.996562 TTGATAGTACGTAATTACATGGCG 57.003 37.500 15.67 3.85 0.00 5.69
5870 7738 8.066000 GGTTTTGATAGTACGTAATTACATGGC 58.934 37.037 15.67 2.99 0.00 4.40
5873 7741 8.823818 GCAGGTTTTGATAGTACGTAATTACAT 58.176 33.333 15.67 2.70 0.00 2.29
5874 7742 8.036575 AGCAGGTTTTGATAGTACGTAATTACA 58.963 33.333 15.67 0.00 0.00 2.41
5875 7743 8.416485 AGCAGGTTTTGATAGTACGTAATTAC 57.584 34.615 0.00 5.47 0.00 1.89
5877 7745 7.916914 AAGCAGGTTTTGATAGTACGTAATT 57.083 32.000 0.00 0.00 0.00 1.40
5878 7746 9.609346 ATTAAGCAGGTTTTGATAGTACGTAAT 57.391 29.630 0.00 0.00 0.00 1.89
5879 7747 8.875803 CATTAAGCAGGTTTTGATAGTACGTAA 58.124 33.333 0.00 0.00 0.00 3.18
5880 7748 8.036575 ACATTAAGCAGGTTTTGATAGTACGTA 58.963 33.333 0.00 0.00 0.00 3.57
5881 7749 6.877322 ACATTAAGCAGGTTTTGATAGTACGT 59.123 34.615 0.00 0.00 0.00 3.57
5882 7750 7.303634 ACATTAAGCAGGTTTTGATAGTACG 57.696 36.000 0.00 0.00 0.00 3.67
5883 7751 9.908152 AAAACATTAAGCAGGTTTTGATAGTAC 57.092 29.630 0.00 0.00 41.62 2.73
5914 7998 7.628769 ATCGATGCATGCAACCATATTATTA 57.371 32.000 26.68 0.00 0.00 0.98
5915 7999 5.963176 TCGATGCATGCAACCATATTATT 57.037 34.783 26.68 3.17 0.00 1.40
5921 8005 2.025898 TCAATCGATGCATGCAACCAT 58.974 42.857 26.68 13.76 0.00 3.55
5923 8007 2.390938 CATCAATCGATGCATGCAACC 58.609 47.619 26.68 18.06 42.54 3.77
5933 8017 0.602106 CGGCCTCTGCATCAATCGAT 60.602 55.000 0.00 0.00 40.13 3.59
5935 8019 1.220169 CTCGGCCTCTGCATCAATCG 61.220 60.000 0.00 0.00 40.13 3.34
5936 8020 0.883814 CCTCGGCCTCTGCATCAATC 60.884 60.000 0.00 0.00 40.13 2.67
5938 8022 0.975556 TACCTCGGCCTCTGCATCAA 60.976 55.000 0.00 0.00 40.13 2.57
5941 8025 0.394565 GATTACCTCGGCCTCTGCAT 59.605 55.000 0.00 0.00 40.13 3.96
5943 8027 1.069935 GGATTACCTCGGCCTCTGC 59.930 63.158 0.00 0.00 0.00 4.26
5944 8028 2.827715 AGGATTACCTCGGCCTCTG 58.172 57.895 0.00 0.00 44.13 3.35
5951 8035 7.375053 TTTTTGGAAAAATGAGGATTACCTCG 58.625 34.615 10.95 0.00 46.31 4.63
5975 8059 9.869757 AGTAGTTTAAGCATGTTTCAAGTTTTT 57.130 25.926 0.00 0.00 0.00 1.94
5976 8060 9.516314 GAGTAGTTTAAGCATGTTTCAAGTTTT 57.484 29.630 0.00 0.00 0.00 2.43
5977 8061 8.135529 GGAGTAGTTTAAGCATGTTTCAAGTTT 58.864 33.333 0.00 0.00 0.00 2.66
5978 8062 7.502561 AGGAGTAGTTTAAGCATGTTTCAAGTT 59.497 33.333 0.00 0.00 0.00 2.66
5980 8064 7.440523 AGGAGTAGTTTAAGCATGTTTCAAG 57.559 36.000 0.00 0.00 0.00 3.02
5982 8066 5.637810 CGAGGAGTAGTTTAAGCATGTTTCA 59.362 40.000 0.00 0.00 0.00 2.69
5985 8069 5.148651 ACGAGGAGTAGTTTAAGCATGTT 57.851 39.130 0.00 0.00 0.00 2.71
5986 8070 4.674623 CGACGAGGAGTAGTTTAAGCATGT 60.675 45.833 0.00 0.00 0.00 3.21
5987 8071 3.791887 CGACGAGGAGTAGTTTAAGCATG 59.208 47.826 0.00 0.00 0.00 4.06
5989 8073 2.163010 CCGACGAGGAGTAGTTTAAGCA 59.837 50.000 0.00 0.00 45.00 3.91
6003 8105 5.553290 ACATCATATACATCTCCGACGAG 57.447 43.478 0.00 0.00 37.48 4.18
6005 8107 6.424176 AGTACATCATATACATCTCCGACG 57.576 41.667 0.00 0.00 0.00 5.12
6349 8452 7.862512 TTTTCTTGTGCATGAGGAAATTTTT 57.137 28.000 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.