Multiple sequence alignment - TraesCS6A01G229400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G229400 chr6A 100.000 4368 0 0 886 5253 432249413 432245046 0.000000e+00 8067.0
1 TraesCS6A01G229400 chr6A 100.000 458 0 0 1 458 432250298 432249841 0.000000e+00 846.0
2 TraesCS6A01G229400 chr6D 92.242 3532 173 34 982 4447 291242221 291245717 0.000000e+00 4911.0
3 TraesCS6A01G229400 chr6D 95.398 565 12 2 4692 5253 291245707 291246260 0.000000e+00 887.0
4 TraesCS6A01G229400 chr6B 92.101 2051 117 14 2408 4447 452186059 452188075 0.000000e+00 2848.0
5 TraesCS6A01G229400 chr6B 90.770 1441 88 11 987 2409 452184588 452186001 0.000000e+00 1882.0
6 TraesCS6A01G229400 chr6B 94.565 460 10 5 4802 5253 452188323 452188775 0.000000e+00 697.0
7 TraesCS6A01G229400 chr6B 88.288 222 18 6 4487 4701 8671126 8670906 5.220000e-65 259.0
8 TraesCS6A01G229400 chr6B 88.288 222 18 6 4487 4701 8687442 8687222 5.220000e-65 259.0
9 TraesCS6A01G229400 chr6B 88.288 222 18 6 4487 4701 8700560 8700340 5.220000e-65 259.0
10 TraesCS6A01G229400 chr6B 88.288 222 18 6 4487 4701 8721663 8721443 5.220000e-65 259.0
11 TraesCS6A01G229400 chr6B 87.156 109 3 1 4692 4800 452188065 452188162 4.300000e-21 113.0
12 TraesCS6A01G229400 chr2B 86.978 407 42 8 1 402 707654701 707654301 1.040000e-121 448.0
13 TraesCS6A01G229400 chr2B 74.378 402 76 19 71 458 707654468 707654080 4.240000e-31 147.0
14 TraesCS6A01G229400 chr2D 85.258 407 44 13 1 402 59651727 59652122 6.330000e-109 405.0
15 TraesCS6A01G229400 chr2D 79.211 380 37 22 110 458 59651938 59652306 5.290000e-55 226.0
16 TraesCS6A01G229400 chr2D 77.665 394 73 14 70 458 447839204 447839587 5.290000e-55 226.0
17 TraesCS6A01G229400 chr2D 97.059 34 1 0 906 939 447839803 447839836 2.040000e-04 58.4
18 TraesCS6A01G229400 chr4A 84.691 405 48 14 3 403 548312036 548311642 4.930000e-105 392.0
19 TraesCS6A01G229400 chr4A 75.000 404 75 19 65 458 548311855 548311468 4.210000e-36 163.0
20 TraesCS6A01G229400 chr4A 100.000 29 0 0 889 917 548311413 548311385 3.000000e-03 54.7
21 TraesCS6A01G229400 chr7D 84.198 405 54 8 1 402 229273757 229273360 8.250000e-103 385.0
22 TraesCS6A01G229400 chr7D 75.689 399 75 14 70 458 229273545 229273159 4.180000e-41 180.0
23 TraesCS6A01G229400 chr7D 100.000 29 0 0 889 917 229272985 229272957 3.000000e-03 54.7
24 TraesCS6A01G229400 chr5A 84.275 407 51 10 1 403 606522845 606522448 8.250000e-103 385.0
25 TraesCS6A01G229400 chr5A 81.863 408 55 16 1 402 60521643 60521249 5.070000e-85 326.0
26 TraesCS6A01G229400 chr5A 77.114 402 67 20 67 458 60521435 60521049 5.330000e-50 209.0
27 TraesCS6A01G229400 chr5A 75.682 403 65 23 65 458 606522662 606522284 2.520000e-38 171.0
28 TraesCS6A01G229400 chr5A 100.000 29 0 0 889 917 60520876 60520848 3.000000e-03 54.7
29 TraesCS6A01G229400 chr5A 100.000 28 0 0 912 939 606522077 606522050 1.000000e-02 52.8
30 TraesCS6A01G229400 chr3A 84.412 340 41 10 67 402 689388271 689387940 1.820000e-84 324.0
31 TraesCS6A01G229400 chr3A 100.000 29 0 0 911 939 689387264 689387236 3.000000e-03 54.7
32 TraesCS6A01G229400 chr3A 100.000 29 0 0 889 917 689387304 689387276 3.000000e-03 54.7
33 TraesCS6A01G229400 chr1A 91.262 206 16 2 4487 4691 551528460 551528256 4.010000e-71 279.0
34 TraesCS6A01G229400 chr1A 100.000 29 0 0 889 917 153913397 153913369 3.000000e-03 54.7
35 TraesCS6A01G229400 chr1D 89.352 216 13 8 4487 4695 18864558 18864770 4.030000e-66 263.0
36 TraesCS6A01G229400 chrUn 89.202 213 15 6 4487 4692 200670027 200670238 5.220000e-65 259.0
37 TraesCS6A01G229400 chrUn 89.202 213 15 6 4487 4692 300146104 300146315 5.220000e-65 259.0
38 TraesCS6A01G229400 chrUn 89.202 213 15 6 4487 4692 413842420 413842631 5.220000e-65 259.0
39 TraesCS6A01G229400 chrUn 84.211 228 32 4 132 357 387526006 387526231 8.860000e-53 219.0
40 TraesCS6A01G229400 chrUn 84.211 228 32 4 132 357 401155178 401155403 8.860000e-53 219.0
41 TraesCS6A01G229400 chrUn 76.617 402 72 18 70 458 401155260 401155652 8.920000e-48 202.0
42 TraesCS6A01G229400 chrUn 76.368 402 73 19 70 458 387526088 387526480 4.150000e-46 196.0
43 TraesCS6A01G229400 chrUn 100.000 29 0 0 889 917 387526635 387526663 3.000000e-03 54.7
44 TraesCS6A01G229400 chrUn 100.000 29 0 0 889 917 401155807 401155835 3.000000e-03 54.7
45 TraesCS6A01G229400 chr7A 81.356 177 22 10 192 364 644012258 644012089 3.300000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G229400 chr6A 432245046 432250298 5252 True 4456.500000 8067 100.000000 1 5253 2 chr6A.!!$R1 5252
1 TraesCS6A01G229400 chr6D 291242221 291246260 4039 False 2899.000000 4911 93.820000 982 5253 2 chr6D.!!$F1 4271
2 TraesCS6A01G229400 chr6B 452184588 452188775 4187 False 1385.000000 2848 91.148000 987 5253 4 chr6B.!!$F1 4266
3 TraesCS6A01G229400 chr2B 707654080 707654701 621 True 297.500000 448 80.678000 1 458 2 chr2B.!!$R1 457
4 TraesCS6A01G229400 chr2D 59651727 59652306 579 False 315.500000 405 82.234500 1 458 2 chr2D.!!$F1 457
5 TraesCS6A01G229400 chr4A 548311385 548312036 651 True 203.233333 392 86.563667 3 917 3 chr4A.!!$R1 914
6 TraesCS6A01G229400 chr7D 229272957 229273757 800 True 206.566667 385 86.629000 1 917 3 chr7D.!!$R1 916
7 TraesCS6A01G229400 chr5A 606522050 606522845 795 True 202.933333 385 86.652333 1 939 3 chr5A.!!$R2 938

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
963 1199 0.032678 AGCGAGACATAGCATTCGGG 59.967 55.0 0.00 0.0 35.48 5.14 F
972 1208 0.033504 TAGCATTCGGGCCGATTCTC 59.966 55.0 31.59 18.5 35.23 2.87 F
1750 2015 0.398318 GTCCTTGCTGTCTCAACCCT 59.602 55.0 0.00 0.0 0.00 4.34 F
2809 3149 0.109723 TGGCCCCTGTGTTACTGTTC 59.890 55.0 0.00 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2177 2455 0.250234 TGCAGGATATCCATAGCGGC 59.750 55.0 23.81 15.65 38.89 6.53 R
2775 3115 0.458669 GGCCATCAAGCACATTGGAG 59.541 55.0 0.00 0.00 39.54 3.86 R
3014 3385 0.844660 ATGACATGATCTGCAGGCCT 59.155 50.0 15.13 0.00 0.00 5.19 R
4521 4915 0.036388 GGATGAAGTGGGAGCACGAA 60.036 55.0 0.00 0.00 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
248 251 5.336744 TCGATGAAATTTTACCAAATCCGC 58.663 37.500 0.00 0.00 30.80 5.54
255 258 6.827586 AATTTTACCAAATCCGCTGAACTA 57.172 33.333 0.00 0.00 30.80 2.24
374 565 9.288576 TGATGAACTATTTTTCTGAGTCAATGT 57.711 29.630 0.00 0.00 0.00 2.71
434 647 5.017490 AGAGTACATACTGTAGCCAACTGT 58.983 41.667 0.00 4.99 42.33 3.55
948 1184 3.103637 GGAGCTCTCCTCTAAGCGA 57.896 57.895 14.64 0.00 46.16 4.93
949 1185 0.951558 GGAGCTCTCCTCTAAGCGAG 59.048 60.000 14.64 0.00 46.16 5.03
950 1186 1.476110 GGAGCTCTCCTCTAAGCGAGA 60.476 57.143 14.64 0.00 46.16 4.04
951 1187 1.602377 GAGCTCTCCTCTAAGCGAGAC 59.398 57.143 6.43 0.00 42.62 3.36
952 1188 1.065053 AGCTCTCCTCTAAGCGAGACA 60.065 52.381 0.00 0.00 42.62 3.41
953 1189 1.953686 GCTCTCCTCTAAGCGAGACAT 59.046 52.381 0.00 0.00 42.62 3.06
954 1190 3.142951 GCTCTCCTCTAAGCGAGACATA 58.857 50.000 0.00 0.00 42.62 2.29
955 1191 3.188460 GCTCTCCTCTAAGCGAGACATAG 59.812 52.174 0.00 0.00 42.62 2.23
956 1192 3.142951 TCTCCTCTAAGCGAGACATAGC 58.857 50.000 0.00 0.00 42.62 2.97
957 1193 2.881513 CTCCTCTAAGCGAGACATAGCA 59.118 50.000 0.00 0.00 42.62 3.49
958 1194 3.491342 TCCTCTAAGCGAGACATAGCAT 58.509 45.455 0.00 0.00 42.62 3.79
959 1195 3.891977 TCCTCTAAGCGAGACATAGCATT 59.108 43.478 0.00 0.00 42.62 3.56
960 1196 4.022762 TCCTCTAAGCGAGACATAGCATTC 60.023 45.833 0.00 0.00 42.62 2.67
961 1197 3.890128 TCTAAGCGAGACATAGCATTCG 58.110 45.455 0.00 0.00 35.48 3.34
962 1198 1.858091 AAGCGAGACATAGCATTCGG 58.142 50.000 0.00 0.00 35.48 4.30
963 1199 0.032678 AGCGAGACATAGCATTCGGG 59.967 55.000 0.00 0.00 35.48 5.14
964 1200 1.560860 GCGAGACATAGCATTCGGGC 61.561 60.000 0.00 0.00 33.89 6.13
965 1201 0.946221 CGAGACATAGCATTCGGGCC 60.946 60.000 0.00 0.00 0.00 5.80
966 1202 0.946221 GAGACATAGCATTCGGGCCG 60.946 60.000 22.51 22.51 0.00 6.13
967 1203 1.069090 GACATAGCATTCGGGCCGA 59.931 57.895 27.46 27.46 0.00 5.54
968 1204 0.320771 GACATAGCATTCGGGCCGAT 60.321 55.000 31.59 17.67 35.23 4.18
969 1205 0.108585 ACATAGCATTCGGGCCGATT 59.891 50.000 31.59 23.80 35.23 3.34
970 1206 0.798776 CATAGCATTCGGGCCGATTC 59.201 55.000 31.59 20.51 35.23 2.52
971 1207 0.687354 ATAGCATTCGGGCCGATTCT 59.313 50.000 31.59 25.86 35.23 2.40
972 1208 0.033504 TAGCATTCGGGCCGATTCTC 59.966 55.000 31.59 18.50 35.23 2.87
973 1209 1.523711 GCATTCGGGCCGATTCTCA 60.524 57.895 31.59 15.39 35.23 3.27
974 1210 1.095228 GCATTCGGGCCGATTCTCAA 61.095 55.000 31.59 14.53 35.23 3.02
975 1211 1.597742 CATTCGGGCCGATTCTCAAT 58.402 50.000 31.59 16.40 35.23 2.57
976 1212 2.766313 CATTCGGGCCGATTCTCAATA 58.234 47.619 31.59 12.82 35.23 1.90
977 1213 3.338249 CATTCGGGCCGATTCTCAATAT 58.662 45.455 31.59 14.77 35.23 1.28
978 1214 3.485463 TTCGGGCCGATTCTCAATATT 57.515 42.857 31.59 0.00 35.23 1.28
979 1215 3.485463 TCGGGCCGATTCTCAATATTT 57.515 42.857 27.46 0.00 0.00 1.40
980 1216 3.815809 TCGGGCCGATTCTCAATATTTT 58.184 40.909 27.46 0.00 0.00 1.82
983 1219 7.893894 TTCGGGCCGATTCTCAATATTTTGAG 61.894 42.308 31.59 17.08 46.09 3.02
1001 1237 4.815533 TGAGAGAACTGGGATGAAAGAG 57.184 45.455 0.00 0.00 0.00 2.85
1012 1248 2.229784 GGATGAAAGAGGTGCTTGGTTG 59.770 50.000 0.00 0.00 36.80 3.77
1053 1289 2.109774 CCAGCCCAAATTGCCTAATCA 58.890 47.619 0.00 0.00 0.00 2.57
1184 1426 4.773117 GACGCCTCCGACCACGAC 62.773 72.222 0.00 0.00 42.66 4.34
1202 1444 2.266055 GGTTGCCTCTCTCCGGTG 59.734 66.667 0.00 0.00 0.00 4.94
1312 1567 1.581223 TCTCTCACCTCCTCGTCCTA 58.419 55.000 0.00 0.00 0.00 2.94
1392 1647 2.281761 ACAGCTTTCCGGCACTGG 60.282 61.111 14.56 0.00 34.40 4.00
1463 1718 2.815647 CCTCCGGCGAACTTCTGC 60.816 66.667 9.30 0.00 0.00 4.26
1489 1744 1.448540 CAGCTACCACTGCTTCCGG 60.449 63.158 0.00 0.00 38.92 5.14
1500 1755 2.511600 CTTCCGGCGTCATCACCC 60.512 66.667 6.01 0.00 0.00 4.61
1567 1822 1.119684 CCATCGTCACACCCTATCCA 58.880 55.000 0.00 0.00 0.00 3.41
1587 1842 1.005394 CGTTCCGTGCTGGTACCTT 60.005 57.895 14.36 0.00 39.52 3.50
1750 2015 0.398318 GTCCTTGCTGTCTCAACCCT 59.602 55.000 0.00 0.00 0.00 4.34
1847 2113 7.994911 TCAGATAATTTTGGCTGTGAGATGTAT 59.005 33.333 0.00 0.00 0.00 2.29
1994 2267 4.940046 ACTGCTATCATCCACTGTTTTCTG 59.060 41.667 0.00 0.00 0.00 3.02
2038 2313 6.303054 TGAGATGGTTTTGTCCATTAGTTGA 58.697 36.000 0.00 0.00 46.72 3.18
2046 2321 4.882842 TGTCCATTAGTTGACACTGCTA 57.117 40.909 0.00 0.00 36.62 3.49
2139 2417 4.507710 CTTGTCAAGGAATAGCTACTGCA 58.492 43.478 4.52 0.00 42.74 4.41
2142 2420 3.623510 GTCAAGGAATAGCTACTGCAACC 59.376 47.826 0.00 0.00 42.74 3.77
2177 2455 1.250154 TTTGGATTCCCTGCCGCAAG 61.250 55.000 0.00 0.00 0.00 4.01
2212 2490 2.611292 CCTGCAAGATCATCGGTTTCTC 59.389 50.000 0.00 0.00 34.07 2.87
2323 2601 8.995027 TTATGGATATTTTACTCAGGCACAAT 57.005 30.769 0.00 0.00 0.00 2.71
2494 2832 3.698765 CCATTCACTTGGTGGGCC 58.301 61.111 0.00 0.00 33.87 5.80
2495 2833 1.228831 CCATTCACTTGGTGGGCCA 60.229 57.895 0.00 0.00 44.38 5.36
2512 2850 3.099905 GGCCAAGATTTCCTAGGCTTTT 58.900 45.455 2.96 0.00 44.60 2.27
2519 2857 7.993183 CCAAGATTTCCTAGGCTTTTATGAGTA 59.007 37.037 2.96 0.00 0.00 2.59
2558 2897 1.258982 GCACAATATCGTTGGAGAGCG 59.741 52.381 0.00 0.00 0.00 5.03
2559 2898 2.809446 CACAATATCGTTGGAGAGCGA 58.191 47.619 0.00 0.00 41.50 4.93
2565 2905 1.996292 TCGTTGGAGAGCGATTCTTG 58.004 50.000 0.00 0.00 35.87 3.02
2622 2962 9.695526 TGTTTCTCAAATGATAAAATGGAAGTG 57.304 29.630 0.00 0.00 0.00 3.16
2624 2964 6.554419 TCTCAAATGATAAAATGGAAGTGCG 58.446 36.000 0.00 0.00 0.00 5.34
2631 2971 7.624360 TGATAAAATGGAAGTGCGAAGTTAT 57.376 32.000 0.00 0.00 0.00 1.89
2638 2978 7.672983 ATGGAAGTGCGAAGTTATATTATGG 57.327 36.000 0.00 0.00 0.00 2.74
2645 2985 8.148351 AGTGCGAAGTTATATTATGGAAGCTTA 58.852 33.333 0.00 0.00 0.00 3.09
2647 2987 9.332502 TGCGAAGTTATATTATGGAAGCTTAAA 57.667 29.630 0.00 0.00 0.00 1.52
2667 3007 9.727403 GCTTAAATTAATTTCAAGTTCTTTCGC 57.273 29.630 16.56 0.08 0.00 4.70
2669 3009 7.652300 AAATTAATTTCAAGTTCTTTCGCCC 57.348 32.000 7.64 0.00 0.00 6.13
2679 3019 0.398696 TCTTTCGCCCTTGCTGGTAA 59.601 50.000 0.00 0.00 34.43 2.85
2685 3025 3.422796 TCGCCCTTGCTGGTAAAATAAA 58.577 40.909 0.00 0.00 34.43 1.40
2692 3032 6.381801 CCTTGCTGGTAAAATAAAGACTGTG 58.618 40.000 0.00 0.00 0.00 3.66
2696 3036 6.030228 GCTGGTAAAATAAAGACTGTGATGC 58.970 40.000 0.00 0.00 0.00 3.91
2699 3039 8.856153 TGGTAAAATAAAGACTGTGATGCTTA 57.144 30.769 0.00 0.00 0.00 3.09
2758 3098 8.540388 TCAGGGATATACCATATCTTTACTTGC 58.460 37.037 6.78 0.00 41.20 4.01
2759 3099 8.543774 CAGGGATATACCATATCTTTACTTGCT 58.456 37.037 6.78 0.00 41.20 3.91
2760 3100 8.543774 AGGGATATACCATATCTTTACTTGCTG 58.456 37.037 6.78 0.00 41.20 4.41
2761 3101 8.540388 GGGATATACCATATCTTTACTTGCTGA 58.460 37.037 0.00 0.00 41.20 4.26
2775 3115 8.532977 TTTACTTGCTGAATTATTTCCAAAGC 57.467 30.769 0.00 0.00 32.04 3.51
2809 3149 0.109723 TGGCCCCTGTGTTACTGTTC 59.890 55.000 0.00 0.00 0.00 3.18
2841 3181 3.053395 TGAGGAAGGATGAAGATTTGGGG 60.053 47.826 0.00 0.00 0.00 4.96
2856 3196 3.359695 TTGGGGGCACTAATCTGTTAC 57.640 47.619 0.00 0.00 0.00 2.50
2865 3205 5.154222 GCACTAATCTGTTACTGCAAAACC 58.846 41.667 8.65 0.00 32.91 3.27
2881 3221 4.791734 GCAAAACCTTACTACAGTTGTGCC 60.792 45.833 6.07 0.00 45.11 5.01
2900 3240 5.709631 TGTGCCTGTACATATTCACAATGTT 59.290 36.000 13.57 0.00 38.49 2.71
2923 3268 9.634021 TGTTGTAGGATTGGCATTATATTGTTA 57.366 29.630 0.00 0.00 0.00 2.41
2970 3318 6.227522 AGACTTGAAAGGAGAAGTTTCTAGC 58.772 40.000 6.85 2.19 39.14 3.42
3009 3380 5.823353 TGTACATAATGCATGCATTGACAG 58.177 37.500 42.30 31.63 45.15 3.51
3014 3385 6.263617 ACATAATGCATGCATTGACAGTATCA 59.736 34.615 42.30 26.34 45.15 2.15
3182 3558 8.593945 TTTTATATTGGCTCTTTCCTGAACAT 57.406 30.769 0.00 0.00 0.00 2.71
3188 3564 5.569355 TGGCTCTTTCCTGAACATTGAATA 58.431 37.500 0.00 0.00 0.00 1.75
3190 3566 5.163612 GGCTCTTTCCTGAACATTGAATACC 60.164 44.000 0.00 0.00 0.00 2.73
3201 3577 6.658816 TGAACATTGAATACCATGTGCTAACT 59.341 34.615 0.00 0.00 0.00 2.24
3317 3694 0.239879 TTGATTTTTCCGCTCGTGCC 59.760 50.000 3.52 0.00 35.36 5.01
3323 3700 3.744749 TTCCGCTCGTGCCGTATCG 62.745 63.158 3.52 0.00 35.36 2.92
3340 3717 1.522668 TCGTCATCCCTTGCAAAGTG 58.477 50.000 0.00 0.00 44.25 3.16
3352 3729 5.215160 CCTTGCAAAGTGTGATTCTGTAAC 58.785 41.667 0.00 0.00 44.25 2.50
3362 3739 2.550606 TGATTCTGTAACGGGCAACAAC 59.449 45.455 0.00 0.00 39.74 3.32
3394 3771 0.966875 TTGCCATCAATCCGCAGCTT 60.967 50.000 0.00 0.00 33.30 3.74
3437 3814 1.550524 TGTCAGGCATCTTTAGCGTCT 59.449 47.619 0.00 0.00 0.00 4.18
3512 3889 3.520290 TGTGTACCTTATCTTCTGCCG 57.480 47.619 0.00 0.00 0.00 5.69
3626 4003 2.034799 GCACTAGTCCCTGGATGGCTA 61.035 57.143 0.00 0.00 0.00 3.93
3734 4111 0.034896 TTCTTCTTGACACGGGCTCC 59.965 55.000 0.00 0.00 0.00 4.70
3921 4298 3.376234 CACAGCGTTCATCCATTCTGATT 59.624 43.478 0.00 0.00 0.00 2.57
4015 4392 5.104318 TGTGAGATAGAGAACTAGCTGAGGA 60.104 44.000 0.00 0.00 44.01 3.71
4101 4478 5.186409 ACGGGTAATTGTAGTAGCTTCTCAA 59.814 40.000 0.00 2.27 0.00 3.02
4226 4603 8.658609 AGCAATTCGAAATGATGTTTAATTTGG 58.341 29.630 17.30 0.00 0.00 3.28
4252 4646 4.901849 AGTATGCTTATGTTGGAGCTCCTA 59.098 41.667 32.28 23.49 39.60 2.94
4253 4647 4.778213 ATGCTTATGTTGGAGCTCCTAA 57.222 40.909 32.28 21.30 39.60 2.69
4254 4648 4.142609 TGCTTATGTTGGAGCTCCTAAG 57.857 45.455 32.28 27.98 39.60 2.18
4255 4649 3.519510 TGCTTATGTTGGAGCTCCTAAGT 59.480 43.478 32.28 18.67 39.60 2.24
4256 4650 4.123506 GCTTATGTTGGAGCTCCTAAGTC 58.876 47.826 32.28 20.47 36.01 3.01
4257 4651 4.141824 GCTTATGTTGGAGCTCCTAAGTCT 60.142 45.833 32.28 14.79 36.01 3.24
4258 4652 5.069251 GCTTATGTTGGAGCTCCTAAGTCTA 59.931 44.000 32.28 13.85 36.01 2.59
4259 4653 6.239458 GCTTATGTTGGAGCTCCTAAGTCTAT 60.239 42.308 32.28 17.94 36.01 1.98
4260 4654 7.676683 TTATGTTGGAGCTCCTAAGTCTATT 57.323 36.000 32.28 10.64 36.82 1.73
4261 4655 5.599999 TGTTGGAGCTCCTAAGTCTATTC 57.400 43.478 32.28 11.67 36.82 1.75
4262 4656 5.273208 TGTTGGAGCTCCTAAGTCTATTCT 58.727 41.667 32.28 0.00 36.82 2.40
4263 4657 5.721960 TGTTGGAGCTCCTAAGTCTATTCTT 59.278 40.000 32.28 0.00 36.82 2.52
4264 4658 6.127310 TGTTGGAGCTCCTAAGTCTATTCTTC 60.127 42.308 32.28 9.80 36.82 2.87
4265 4659 4.896482 TGGAGCTCCTAAGTCTATTCTTCC 59.104 45.833 32.28 1.86 36.82 3.46
4266 4660 5.144832 GGAGCTCCTAAGTCTATTCTTCCT 58.855 45.833 26.25 0.00 0.00 3.36
4267 4661 5.243060 GGAGCTCCTAAGTCTATTCTTCCTC 59.757 48.000 26.25 0.00 0.00 3.71
4268 4662 6.025793 AGCTCCTAAGTCTATTCTTCCTCT 57.974 41.667 0.00 0.00 0.00 3.69
4292 4686 4.370364 TTGTGTTTCCTTTGAGCTGTTC 57.630 40.909 0.00 0.00 0.00 3.18
4324 4718 6.428385 AACTCTGGCAATCTTAGAATTTCG 57.572 37.500 0.00 0.00 0.00 3.46
4331 4725 6.038603 TGGCAATCTTAGAATTTCGAGAATGG 59.961 38.462 16.04 8.68 0.00 3.16
4349 4743 1.165270 GGCATGTTAAGCCGTTCACT 58.835 50.000 0.00 0.00 43.15 3.41
4436 4830 5.186021 AGTGTAATCAGTAGAGGTGAAGGTG 59.814 44.000 0.00 0.00 0.00 4.00
4437 4831 5.047235 GTGTAATCAGTAGAGGTGAAGGTGT 60.047 44.000 0.00 0.00 0.00 4.16
4438 4832 6.152323 GTGTAATCAGTAGAGGTGAAGGTGTA 59.848 42.308 0.00 0.00 0.00 2.90
4439 4833 5.662674 AATCAGTAGAGGTGAAGGTGTAC 57.337 43.478 0.00 0.00 0.00 2.90
4440 4834 4.383931 TCAGTAGAGGTGAAGGTGTACT 57.616 45.455 0.00 0.00 0.00 2.73
4441 4835 4.737578 TCAGTAGAGGTGAAGGTGTACTT 58.262 43.478 0.00 0.00 43.65 2.24
4442 4836 4.523173 TCAGTAGAGGTGAAGGTGTACTTG 59.477 45.833 0.00 0.00 40.21 3.16
4443 4837 2.841442 AGAGGTGAAGGTGTACTTGC 57.159 50.000 0.00 0.00 40.21 4.01
4444 4838 2.047061 AGAGGTGAAGGTGTACTTGCA 58.953 47.619 0.00 0.00 40.21 4.08
4445 4839 2.037772 AGAGGTGAAGGTGTACTTGCAG 59.962 50.000 0.00 0.00 40.21 4.41
4446 4840 1.072331 AGGTGAAGGTGTACTTGCAGG 59.928 52.381 0.00 0.00 40.21 4.85
4447 4841 1.523758 GTGAAGGTGTACTTGCAGGG 58.476 55.000 0.00 0.00 40.21 4.45
4448 4842 1.071699 GTGAAGGTGTACTTGCAGGGA 59.928 52.381 0.00 0.00 40.21 4.20
4449 4843 1.985159 TGAAGGTGTACTTGCAGGGAT 59.015 47.619 0.00 0.00 40.21 3.85
4450 4844 2.027192 TGAAGGTGTACTTGCAGGGATC 60.027 50.000 0.00 0.00 40.21 3.36
4451 4845 1.958288 AGGTGTACTTGCAGGGATCT 58.042 50.000 0.00 0.00 0.00 2.75
4452 4846 3.116096 AGGTGTACTTGCAGGGATCTA 57.884 47.619 0.00 0.00 0.00 1.98
4453 4847 3.450904 AGGTGTACTTGCAGGGATCTAA 58.549 45.455 0.00 0.00 0.00 2.10
4454 4848 3.452627 AGGTGTACTTGCAGGGATCTAAG 59.547 47.826 0.00 0.00 0.00 2.18
4455 4849 3.198872 GTGTACTTGCAGGGATCTAAGC 58.801 50.000 0.00 0.00 0.00 3.09
4456 4850 2.170607 TGTACTTGCAGGGATCTAAGCC 59.829 50.000 0.00 0.00 0.00 4.35
4457 4851 1.289160 ACTTGCAGGGATCTAAGCCA 58.711 50.000 0.00 0.00 0.00 4.75
4458 4852 1.211457 ACTTGCAGGGATCTAAGCCAG 59.789 52.381 0.00 0.00 0.00 4.85
4459 4853 1.211457 CTTGCAGGGATCTAAGCCAGT 59.789 52.381 0.00 0.00 0.00 4.00
4460 4854 1.289160 TGCAGGGATCTAAGCCAGTT 58.711 50.000 0.00 0.00 0.00 3.16
4461 4855 2.477245 TGCAGGGATCTAAGCCAGTTA 58.523 47.619 0.00 0.00 0.00 2.24
4462 4856 2.170607 TGCAGGGATCTAAGCCAGTTAC 59.829 50.000 0.00 0.00 0.00 2.50
4463 4857 2.436173 GCAGGGATCTAAGCCAGTTACT 59.564 50.000 0.00 0.00 0.00 2.24
4464 4858 3.742640 GCAGGGATCTAAGCCAGTTACTG 60.743 52.174 5.22 5.22 0.00 2.74
4477 4871 4.336889 CAGTTACTGGAGGAAAGTGTCA 57.663 45.455 4.14 0.00 0.00 3.58
4478 4872 4.899502 CAGTTACTGGAGGAAAGTGTCAT 58.100 43.478 4.14 0.00 0.00 3.06
4479 4873 6.037786 CAGTTACTGGAGGAAAGTGTCATA 57.962 41.667 4.14 0.00 0.00 2.15
4480 4874 6.464222 CAGTTACTGGAGGAAAGTGTCATAA 58.536 40.000 4.14 0.00 0.00 1.90
4481 4875 7.106239 CAGTTACTGGAGGAAAGTGTCATAAT 58.894 38.462 4.14 0.00 0.00 1.28
4482 4876 7.607991 CAGTTACTGGAGGAAAGTGTCATAATT 59.392 37.037 4.14 0.00 0.00 1.40
4483 4877 8.822805 AGTTACTGGAGGAAAGTGTCATAATTA 58.177 33.333 0.00 0.00 0.00 1.40
4484 4878 8.880750 GTTACTGGAGGAAAGTGTCATAATTAC 58.119 37.037 0.00 0.00 0.00 1.89
4485 4879 7.259088 ACTGGAGGAAAGTGTCATAATTACT 57.741 36.000 0.00 0.00 0.00 2.24
4486 4880 7.106239 ACTGGAGGAAAGTGTCATAATTACTG 58.894 38.462 0.00 0.00 0.00 2.74
4487 4881 6.414732 TGGAGGAAAGTGTCATAATTACTGG 58.585 40.000 0.00 0.00 0.00 4.00
4488 4882 6.214615 TGGAGGAAAGTGTCATAATTACTGGA 59.785 38.462 0.00 0.00 0.00 3.86
4489 4883 7.092444 TGGAGGAAAGTGTCATAATTACTGGAT 60.092 37.037 0.00 0.00 0.00 3.41
4490 4884 7.442666 GGAGGAAAGTGTCATAATTACTGGATC 59.557 40.741 0.00 0.00 0.00 3.36
4491 4885 7.283329 AGGAAAGTGTCATAATTACTGGATCC 58.717 38.462 4.20 4.20 0.00 3.36
4492 4886 6.202954 GGAAAGTGTCATAATTACTGGATCCG 59.797 42.308 7.39 4.62 0.00 4.18
4493 4887 5.215252 AGTGTCATAATTACTGGATCCGG 57.785 43.478 19.66 19.66 0.00 5.14
4494 4888 3.746492 GTGTCATAATTACTGGATCCGGC 59.254 47.826 21.17 1.28 0.00 6.13
4495 4889 3.646162 TGTCATAATTACTGGATCCGGCT 59.354 43.478 21.17 10.36 0.00 5.52
4496 4890 4.102524 TGTCATAATTACTGGATCCGGCTT 59.897 41.667 21.17 13.63 0.00 4.35
4497 4891 4.452455 GTCATAATTACTGGATCCGGCTTG 59.548 45.833 21.17 9.15 0.00 4.01
4498 4892 1.680338 AATTACTGGATCCGGCTTGC 58.320 50.000 21.17 0.00 0.00 4.01
4499 4893 0.179018 ATTACTGGATCCGGCTTGCC 60.179 55.000 21.17 0.75 0.00 4.52
4500 4894 1.271840 TTACTGGATCCGGCTTGCCT 61.272 55.000 21.17 2.23 0.00 4.75
4501 4895 1.971505 TACTGGATCCGGCTTGCCTG 61.972 60.000 21.17 3.29 0.00 4.85
4502 4896 4.802051 TGGATCCGGCTTGCCTGC 62.802 66.667 7.39 0.00 0.00 4.85
4503 4897 4.496336 GGATCCGGCTTGCCTGCT 62.496 66.667 10.12 0.00 0.00 4.24
4504 4898 2.439156 GATCCGGCTTGCCTGCTT 60.439 61.111 10.12 0.00 0.00 3.91
4505 4899 2.439156 ATCCGGCTTGCCTGCTTC 60.439 61.111 10.12 0.00 0.00 3.86
4506 4900 4.722700 TCCGGCTTGCCTGCTTCC 62.723 66.667 10.12 0.00 0.00 3.46
4507 4901 4.729918 CCGGCTTGCCTGCTTCCT 62.730 66.667 10.12 0.00 0.00 3.36
4508 4902 3.130160 CGGCTTGCCTGCTTCCTC 61.130 66.667 10.12 0.00 0.00 3.71
4509 4903 2.753446 GGCTTGCCTGCTTCCTCC 60.753 66.667 4.11 0.00 0.00 4.30
4510 4904 2.753446 GCTTGCCTGCTTCCTCCC 60.753 66.667 0.00 0.00 0.00 4.30
4511 4905 3.085223 CTTGCCTGCTTCCTCCCT 58.915 61.111 0.00 0.00 0.00 4.20
4512 4906 1.378250 CTTGCCTGCTTCCTCCCTG 60.378 63.158 0.00 0.00 0.00 4.45
4513 4907 2.134630 CTTGCCTGCTTCCTCCCTGT 62.135 60.000 0.00 0.00 0.00 4.00
4514 4908 2.045536 GCCTGCTTCCTCCCTGTG 60.046 66.667 0.00 0.00 0.00 3.66
4515 4909 2.045536 CCTGCTTCCTCCCTGTGC 60.046 66.667 0.00 0.00 0.00 4.57
4516 4910 2.600729 CCTGCTTCCTCCCTGTGCT 61.601 63.158 0.00 0.00 0.00 4.40
4517 4911 1.078567 CTGCTTCCTCCCTGTGCTC 60.079 63.158 0.00 0.00 0.00 4.26
4518 4912 2.270527 GCTTCCTCCCTGTGCTCC 59.729 66.667 0.00 0.00 0.00 4.70
4519 4913 2.993853 CTTCCTCCCTGTGCTCCC 59.006 66.667 0.00 0.00 0.00 4.30
4520 4914 1.920325 CTTCCTCCCTGTGCTCCCA 60.920 63.158 0.00 0.00 0.00 4.37
4521 4915 1.229951 TTCCTCCCTGTGCTCCCAT 60.230 57.895 0.00 0.00 0.00 4.00
4522 4916 0.846427 TTCCTCCCTGTGCTCCCATT 60.846 55.000 0.00 0.00 0.00 3.16
4523 4917 1.225704 CCTCCCTGTGCTCCCATTC 59.774 63.158 0.00 0.00 0.00 2.67
4524 4918 1.153289 CTCCCTGTGCTCCCATTCG 60.153 63.158 0.00 0.00 0.00 3.34
4525 4919 1.903877 CTCCCTGTGCTCCCATTCGT 61.904 60.000 0.00 0.00 0.00 3.85
4526 4920 1.746615 CCCTGTGCTCCCATTCGTG 60.747 63.158 0.00 0.00 0.00 4.35
4527 4921 2.401766 CCTGTGCTCCCATTCGTGC 61.402 63.158 0.00 0.00 0.00 5.34
4528 4922 1.376424 CTGTGCTCCCATTCGTGCT 60.376 57.895 0.00 0.00 0.00 4.40
4529 4923 1.364626 CTGTGCTCCCATTCGTGCTC 61.365 60.000 0.00 0.00 0.00 4.26
4530 4924 2.109126 GTGCTCCCATTCGTGCTCC 61.109 63.158 0.00 0.00 0.00 4.70
4531 4925 2.514824 GCTCCCATTCGTGCTCCC 60.515 66.667 0.00 0.00 0.00 4.30
4532 4926 2.989639 CTCCCATTCGTGCTCCCA 59.010 61.111 0.00 0.00 0.00 4.37
4533 4927 1.450312 CTCCCATTCGTGCTCCCAC 60.450 63.158 0.00 0.00 38.62 4.61
4534 4928 1.903877 CTCCCATTCGTGCTCCCACT 61.904 60.000 0.00 0.00 39.86 4.00
4535 4929 1.002134 CCCATTCGTGCTCCCACTT 60.002 57.895 0.00 0.00 39.86 3.16
4536 4930 1.026718 CCCATTCGTGCTCCCACTTC 61.027 60.000 0.00 0.00 39.86 3.01
4537 4931 0.321564 CCATTCGTGCTCCCACTTCA 60.322 55.000 0.00 0.00 39.86 3.02
4538 4932 1.679944 CCATTCGTGCTCCCACTTCAT 60.680 52.381 0.00 0.00 39.86 2.57
4539 4933 1.667724 CATTCGTGCTCCCACTTCATC 59.332 52.381 0.00 0.00 39.86 2.92
4540 4934 0.036388 TTCGTGCTCCCACTTCATCC 60.036 55.000 0.00 0.00 39.86 3.51
4541 4935 0.904865 TCGTGCTCCCACTTCATCCT 60.905 55.000 0.00 0.00 39.86 3.24
4542 4936 0.824109 CGTGCTCCCACTTCATCCTA 59.176 55.000 0.00 0.00 39.86 2.94
4543 4937 1.471676 CGTGCTCCCACTTCATCCTAC 60.472 57.143 0.00 0.00 39.86 3.18
4544 4938 0.824109 TGCTCCCACTTCATCCTACG 59.176 55.000 0.00 0.00 0.00 3.51
4545 4939 1.112113 GCTCCCACTTCATCCTACGA 58.888 55.000 0.00 0.00 0.00 3.43
4546 4940 1.202428 GCTCCCACTTCATCCTACGAC 60.202 57.143 0.00 0.00 0.00 4.34
4547 4941 2.379972 CTCCCACTTCATCCTACGACT 58.620 52.381 0.00 0.00 0.00 4.18
4548 4942 2.099921 CTCCCACTTCATCCTACGACTG 59.900 54.545 0.00 0.00 0.00 3.51
4549 4943 1.825474 CCCACTTCATCCTACGACTGT 59.175 52.381 0.00 0.00 0.00 3.55
4550 4944 2.159226 CCCACTTCATCCTACGACTGTC 60.159 54.545 0.00 0.00 0.00 3.51
4551 4945 2.755655 CCACTTCATCCTACGACTGTCT 59.244 50.000 6.21 0.00 0.00 3.41
4552 4946 3.193691 CCACTTCATCCTACGACTGTCTT 59.806 47.826 6.21 0.00 0.00 3.01
4553 4947 4.322049 CCACTTCATCCTACGACTGTCTTT 60.322 45.833 6.21 0.00 0.00 2.52
4554 4948 5.230942 CACTTCATCCTACGACTGTCTTTT 58.769 41.667 6.21 0.00 0.00 2.27
4555 4949 5.696724 CACTTCATCCTACGACTGTCTTTTT 59.303 40.000 6.21 0.00 0.00 1.94
4588 4982 9.439461 TTCTAATCTAATCATCTTTCCTCCTGA 57.561 33.333 0.00 0.00 0.00 3.86
4589 4983 9.612879 TCTAATCTAATCATCTTTCCTCCTGAT 57.387 33.333 0.00 0.00 0.00 2.90
4592 4986 9.933240 AATCTAATCATCTTTCCTCCTGATTTT 57.067 29.630 2.37 0.00 38.77 1.82
4596 4990 8.530804 AATCATCTTTCCTCCTGATTTTAAGG 57.469 34.615 0.00 0.00 35.38 2.69
4597 4991 6.426587 TCATCTTTCCTCCTGATTTTAAGGG 58.573 40.000 0.00 0.00 35.35 3.95
4598 4992 5.193099 TCTTTCCTCCTGATTTTAAGGGG 57.807 43.478 0.00 0.00 35.35 4.79
4602 4996 3.018423 CTCCTGATTTTAAGGGGGTGG 57.982 52.381 0.00 0.00 35.35 4.61
4603 4997 1.643811 TCCTGATTTTAAGGGGGTGGG 59.356 52.381 0.00 0.00 35.35 4.61
4604 4998 1.342975 CCTGATTTTAAGGGGGTGGGG 60.343 57.143 0.00 0.00 0.00 4.96
4605 4999 0.041982 TGATTTTAAGGGGGTGGGGC 59.958 55.000 0.00 0.00 0.00 5.80
4606 5000 0.689745 GATTTTAAGGGGGTGGGGCC 60.690 60.000 0.00 0.00 0.00 5.80
4607 5001 2.523740 ATTTTAAGGGGGTGGGGCCG 62.524 60.000 0.00 0.00 38.44 6.13
4615 5009 3.094498 GGTGGGGCCGGACCTTAT 61.094 66.667 29.76 0.00 39.10 1.73
4616 5010 2.686572 GGTGGGGCCGGACCTTATT 61.687 63.158 29.76 0.00 39.10 1.40
4617 5011 1.305287 GTGGGGCCGGACCTTATTT 59.695 57.895 29.76 0.00 39.10 1.40
4618 5012 0.323999 GTGGGGCCGGACCTTATTTT 60.324 55.000 29.76 0.00 39.10 1.82
4619 5013 0.323908 TGGGGCCGGACCTTATTTTG 60.324 55.000 29.76 0.00 39.10 2.44
4620 5014 0.323999 GGGGCCGGACCTTATTTTGT 60.324 55.000 29.76 0.00 39.10 2.83
4621 5015 1.552578 GGGCCGGACCTTATTTTGTT 58.447 50.000 23.07 0.00 39.10 2.83
4622 5016 1.475280 GGGCCGGACCTTATTTTGTTC 59.525 52.381 23.07 0.00 39.10 3.18
4623 5017 1.475280 GGCCGGACCTTATTTTGTTCC 59.525 52.381 5.05 0.00 34.51 3.62
4624 5018 2.164338 GCCGGACCTTATTTTGTTCCA 58.836 47.619 5.05 0.00 0.00 3.53
4625 5019 2.559231 GCCGGACCTTATTTTGTTCCAA 59.441 45.455 5.05 0.00 0.00 3.53
4626 5020 3.194755 GCCGGACCTTATTTTGTTCCAAT 59.805 43.478 5.05 0.00 0.00 3.16
4627 5021 4.322424 GCCGGACCTTATTTTGTTCCAATT 60.322 41.667 5.05 0.00 0.00 2.32
4628 5022 5.105675 GCCGGACCTTATTTTGTTCCAATTA 60.106 40.000 5.05 0.00 0.00 1.40
4629 5023 6.572703 GCCGGACCTTATTTTGTTCCAATTAA 60.573 38.462 5.05 0.00 0.00 1.40
4630 5024 7.379750 CCGGACCTTATTTTGTTCCAATTAAA 58.620 34.615 0.00 0.00 0.00 1.52
4631 5025 8.038351 CCGGACCTTATTTTGTTCCAATTAAAT 58.962 33.333 0.00 0.00 0.00 1.40
4640 5034 7.644986 TTTGTTCCAATTAAATAAAGCCACG 57.355 32.000 0.00 0.00 0.00 4.94
4641 5035 6.334102 TGTTCCAATTAAATAAAGCCACGT 57.666 33.333 0.00 0.00 0.00 4.49
4642 5036 7.450124 TGTTCCAATTAAATAAAGCCACGTA 57.550 32.000 0.00 0.00 0.00 3.57
4643 5037 7.531716 TGTTCCAATTAAATAAAGCCACGTAG 58.468 34.615 0.00 0.00 0.00 3.51
4644 5038 7.390996 TGTTCCAATTAAATAAAGCCACGTAGA 59.609 33.333 0.00 0.00 0.00 2.59
4645 5039 7.311364 TCCAATTAAATAAAGCCACGTAGAC 57.689 36.000 0.00 0.00 0.00 2.59
4646 5040 6.036300 TCCAATTAAATAAAGCCACGTAGACG 59.964 38.462 0.00 0.00 46.33 4.18
4647 5041 5.978934 ATTAAATAAAGCCACGTAGACGG 57.021 39.130 7.04 0.00 44.95 4.79
4648 5042 2.304751 AATAAAGCCACGTAGACGGG 57.695 50.000 7.04 1.53 44.95 5.28
4655 5049 3.437795 ACGTAGACGGGAGCACGG 61.438 66.667 7.04 0.00 44.95 4.94
4656 5050 3.129502 CGTAGACGGGAGCACGGA 61.130 66.667 0.00 0.00 38.39 4.69
4657 5051 2.478890 CGTAGACGGGAGCACGGAT 61.479 63.158 0.00 0.00 38.39 4.18
4658 5052 1.065928 GTAGACGGGAGCACGGATG 59.934 63.158 0.00 0.00 38.39 3.51
4659 5053 2.125326 TAGACGGGAGCACGGATGG 61.125 63.158 0.00 0.00 38.39 3.51
4660 5054 4.530857 GACGGGAGCACGGATGGG 62.531 72.222 0.00 0.00 38.39 4.00
4664 5058 4.408821 GGAGCACGGATGGGCACA 62.409 66.667 0.00 0.00 0.00 4.57
4665 5059 3.127533 GAGCACGGATGGGCACAC 61.128 66.667 0.00 0.00 0.00 3.82
4668 5062 3.118454 CACGGATGGGCACACGAC 61.118 66.667 5.92 0.00 0.00 4.34
4669 5063 4.735132 ACGGATGGGCACACGACG 62.735 66.667 5.92 6.60 0.00 5.12
4678 5072 3.680786 CACACGACGGGGAGCAGA 61.681 66.667 0.43 0.00 0.00 4.26
4679 5073 3.681835 ACACGACGGGGAGCAGAC 61.682 66.667 0.43 0.00 0.00 3.51
4680 5074 3.680786 CACGACGGGGAGCAGACA 61.681 66.667 0.00 0.00 0.00 3.41
4681 5075 2.915659 ACGACGGGGAGCAGACAA 60.916 61.111 0.00 0.00 0.00 3.18
4682 5076 2.125912 CGACGGGGAGCAGACAAG 60.126 66.667 0.00 0.00 0.00 3.16
4683 5077 2.932234 CGACGGGGAGCAGACAAGT 61.932 63.158 0.00 0.00 0.00 3.16
4684 5078 1.079750 GACGGGGAGCAGACAAGTC 60.080 63.158 0.00 0.00 0.00 3.01
4685 5079 1.534235 ACGGGGAGCAGACAAGTCT 60.534 57.895 0.00 0.00 41.37 3.24
4686 5080 1.122019 ACGGGGAGCAGACAAGTCTT 61.122 55.000 0.00 0.00 37.98 3.01
4687 5081 0.671781 CGGGGAGCAGACAAGTCTTG 60.672 60.000 11.17 11.17 37.98 3.02
4728 5122 1.633774 TTTTGCCGCCCCTTAAATGA 58.366 45.000 0.00 0.00 0.00 2.57
4757 5151 2.394930 TCTGCCGCAGCTAATACAAA 57.605 45.000 15.98 0.00 40.80 2.83
4758 5152 2.279741 TCTGCCGCAGCTAATACAAAG 58.720 47.619 15.98 0.00 40.80 2.77
4759 5153 0.732571 TGCCGCAGCTAATACAAAGC 59.267 50.000 0.00 0.00 40.80 3.51
4860 5413 6.982141 GTGTATTAATCTGGACCGTACATCAA 59.018 38.462 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
233 236 7.404671 AATAGTTCAGCGGATTTGGTAAAAT 57.595 32.000 0.00 0.00 38.74 1.82
248 251 9.831737 AGTTCATCGAATTTCAAAATAGTTCAG 57.168 29.630 0.00 0.00 0.00 3.02
886 1103 2.954684 CGTAGCTTGACTGGGCCCA 61.955 63.158 26.67 26.67 0.00 5.36
887 1104 2.125106 CGTAGCTTGACTGGGCCC 60.125 66.667 17.59 17.59 0.00 5.80
940 1176 3.304726 CCGAATGCTATGTCTCGCTTAGA 60.305 47.826 0.00 0.00 0.00 2.10
941 1177 2.983136 CCGAATGCTATGTCTCGCTTAG 59.017 50.000 0.00 0.00 0.00 2.18
942 1178 2.288213 CCCGAATGCTATGTCTCGCTTA 60.288 50.000 0.00 0.00 0.00 3.09
943 1179 1.539065 CCCGAATGCTATGTCTCGCTT 60.539 52.381 0.00 0.00 0.00 4.68
944 1180 0.032678 CCCGAATGCTATGTCTCGCT 59.967 55.000 0.00 0.00 0.00 4.93
945 1181 1.560860 GCCCGAATGCTATGTCTCGC 61.561 60.000 0.00 0.00 0.00 5.03
946 1182 0.946221 GGCCCGAATGCTATGTCTCG 60.946 60.000 0.00 0.00 0.00 4.04
947 1183 0.946221 CGGCCCGAATGCTATGTCTC 60.946 60.000 0.00 0.00 0.00 3.36
948 1184 1.069765 CGGCCCGAATGCTATGTCT 59.930 57.895 0.00 0.00 0.00 3.41
949 1185 0.320771 ATCGGCCCGAATGCTATGTC 60.321 55.000 11.19 0.00 39.99 3.06
950 1186 0.108585 AATCGGCCCGAATGCTATGT 59.891 50.000 11.19 0.00 39.99 2.29
951 1187 0.798776 GAATCGGCCCGAATGCTATG 59.201 55.000 11.19 0.00 39.99 2.23
952 1188 0.687354 AGAATCGGCCCGAATGCTAT 59.313 50.000 11.19 0.00 39.99 2.97
953 1189 0.033504 GAGAATCGGCCCGAATGCTA 59.966 55.000 11.19 0.00 39.99 3.49
954 1190 1.227674 GAGAATCGGCCCGAATGCT 60.228 57.895 11.19 7.79 39.99 3.79
955 1191 1.095228 TTGAGAATCGGCCCGAATGC 61.095 55.000 11.19 2.09 39.99 3.56
956 1192 1.597742 ATTGAGAATCGGCCCGAATG 58.402 50.000 11.19 0.00 39.99 2.67
957 1193 3.703001 ATATTGAGAATCGGCCCGAAT 57.297 42.857 11.19 0.00 39.99 3.34
958 1194 3.485463 AATATTGAGAATCGGCCCGAA 57.515 42.857 11.19 0.00 39.99 4.30
959 1195 3.485463 AAATATTGAGAATCGGCCCGA 57.515 42.857 8.97 8.97 41.13 5.14
960 1196 3.563808 TCAAAATATTGAGAATCGGCCCG 59.436 43.478 0.00 0.00 40.59 6.13
971 1207 7.632861 TCATCCCAGTTCTCTCAAAATATTGA 58.367 34.615 0.00 0.00 43.18 2.57
972 1208 7.870509 TCATCCCAGTTCTCTCAAAATATTG 57.129 36.000 0.00 0.00 37.92 1.90
973 1209 8.884124 TTTCATCCCAGTTCTCTCAAAATATT 57.116 30.769 0.00 0.00 0.00 1.28
974 1210 8.331740 TCTTTCATCCCAGTTCTCTCAAAATAT 58.668 33.333 0.00 0.00 0.00 1.28
975 1211 7.689299 TCTTTCATCCCAGTTCTCTCAAAATA 58.311 34.615 0.00 0.00 0.00 1.40
976 1212 6.546484 TCTTTCATCCCAGTTCTCTCAAAAT 58.454 36.000 0.00 0.00 0.00 1.82
977 1213 5.940617 TCTTTCATCCCAGTTCTCTCAAAA 58.059 37.500 0.00 0.00 0.00 2.44
978 1214 5.513788 CCTCTTTCATCCCAGTTCTCTCAAA 60.514 44.000 0.00 0.00 0.00 2.69
979 1215 4.019860 CCTCTTTCATCCCAGTTCTCTCAA 60.020 45.833 0.00 0.00 0.00 3.02
980 1216 3.517100 CCTCTTTCATCCCAGTTCTCTCA 59.483 47.826 0.00 0.00 0.00 3.27
983 1219 3.604582 CACCTCTTTCATCCCAGTTCTC 58.395 50.000 0.00 0.00 0.00 2.87
993 1229 3.152341 CTCAACCAAGCACCTCTTTCAT 58.848 45.455 0.00 0.00 31.27 2.57
1001 1237 2.991540 GGCCCTCAACCAAGCACC 60.992 66.667 0.00 0.00 0.00 5.01
1012 1248 4.643387 AACACACGCCAGGCCCTC 62.643 66.667 5.63 0.00 0.00 4.30
1179 1421 1.444553 GAGAGAGGCAACCGTCGTG 60.445 63.158 0.00 0.00 37.17 4.35
1180 1422 2.637383 GGAGAGAGGCAACCGTCGT 61.637 63.158 0.00 0.00 37.17 4.34
1181 1423 2.182030 GGAGAGAGGCAACCGTCG 59.818 66.667 0.00 0.00 37.17 5.12
1182 1424 2.182030 CGGAGAGAGGCAACCGTC 59.818 66.667 0.00 0.00 40.42 4.79
1183 1425 3.382832 CCGGAGAGAGGCAACCGT 61.383 66.667 0.00 0.00 43.22 4.83
1184 1426 3.382832 ACCGGAGAGAGGCAACCG 61.383 66.667 9.46 0.00 44.16 4.44
1188 1430 3.071206 GCTCACCGGAGAGAGGCA 61.071 66.667 30.19 0.00 44.26 4.75
1202 1444 1.963515 GGAAGAGGAGATGGAGAGCTC 59.036 57.143 5.27 5.27 33.54 4.09
1277 1531 3.532155 GATGGAGAGAGCCGCCGT 61.532 66.667 0.00 0.00 37.57 5.68
1463 1718 2.055042 AGTGGTAGCTGCTCCTCCG 61.055 63.158 4.91 0.00 0.00 4.63
1500 1755 4.072088 GGTTGACGAAGCCACGCG 62.072 66.667 3.53 3.53 36.70 6.01
1587 1842 0.671796 TCAGGACTCGCGACAAGAAA 59.328 50.000 3.71 0.00 0.00 2.52
1686 1951 4.779733 GGGAGGCCGAGGTGGAGA 62.780 72.222 0.00 0.00 42.00 3.71
1706 1971 1.673808 GAGGTAGAATGGGGACGCGT 61.674 60.000 13.85 13.85 0.00 6.01
1716 1981 0.747283 AGGACGCGACGAGGTAGAAT 60.747 55.000 15.93 0.00 0.00 2.40
1980 2252 3.499745 GGGGTTACCAGAAAACAGTGGAT 60.500 47.826 2.98 0.00 39.85 3.41
1994 2267 0.761702 TCCGGCTATGAGGGGTTACC 60.762 60.000 0.00 0.00 40.67 2.85
2046 2321 6.715347 AAAAATTCGATTAGCCTAGCCAAT 57.285 33.333 0.00 0.00 0.00 3.16
2070 2348 5.129634 TCTTGGACAAAATCTGCAACTGTA 58.870 37.500 0.00 0.00 0.00 2.74
2072 2350 4.572985 TCTTGGACAAAATCTGCAACTG 57.427 40.909 0.00 0.00 0.00 3.16
2139 2417 4.380867 CCAAATAGCTGAGAATTTGCGGTT 60.381 41.667 12.35 0.00 40.27 4.44
2142 2420 4.621068 TCCAAATAGCTGAGAATTTGCG 57.379 40.909 12.35 7.56 40.27 4.85
2177 2455 0.250234 TGCAGGATATCCATAGCGGC 59.750 55.000 23.81 15.65 38.89 6.53
2212 2490 5.398416 GCAGTTTAAGAAACGCTTGTTTAGG 59.602 40.000 9.87 0.00 45.55 2.69
2323 2601 2.587522 ACTCAGAGTACAGTCACAGCA 58.412 47.619 0.00 0.00 0.00 4.41
2413 2750 6.938596 CCATATCCAGACATTTATTCAGCTGA 59.061 38.462 13.74 13.74 0.00 4.26
2464 2802 6.732154 CCAAGTGAATGGTATCATTAAGCAG 58.268 40.000 0.00 0.00 43.08 4.24
2494 2832 7.872113 ACTCATAAAAGCCTAGGAAATCTTG 57.128 36.000 14.75 2.88 0.00 3.02
2495 2833 9.397280 GTTACTCATAAAAGCCTAGGAAATCTT 57.603 33.333 14.75 2.92 0.00 2.40
2548 2887 2.688507 TGACAAGAATCGCTCTCCAAC 58.311 47.619 0.00 0.00 31.02 3.77
2565 2905 9.630098 TTCAAGAGCTTTCATAAAAATCATGAC 57.370 29.630 0.00 0.00 32.23 3.06
2645 2985 7.441836 AGGGCGAAAGAACTTGAAATTAATTT 58.558 30.769 13.24 13.24 0.00 1.82
2647 2987 6.590234 AGGGCGAAAGAACTTGAAATTAAT 57.410 33.333 0.00 0.00 0.00 1.40
2667 3007 5.476945 ACAGTCTTTATTTTACCAGCAAGGG 59.523 40.000 0.04 0.00 43.89 3.95
2668 3008 6.206634 TCACAGTCTTTATTTTACCAGCAAGG 59.793 38.462 0.00 0.00 45.67 3.61
2669 3009 7.202016 TCACAGTCTTTATTTTACCAGCAAG 57.798 36.000 0.00 0.00 0.00 4.01
2679 3019 7.391554 TGAGCTTAAGCATCACAGTCTTTATTT 59.608 33.333 28.39 1.87 45.16 1.40
2685 3025 3.260380 AGTGAGCTTAAGCATCACAGTCT 59.740 43.478 35.22 23.81 44.22 3.24
2692 3032 5.120519 GCATCTATCAGTGAGCTTAAGCATC 59.879 44.000 28.39 21.12 45.16 3.91
2696 3036 7.600960 TGATAGCATCTATCAGTGAGCTTAAG 58.399 38.462 8.89 0.00 33.83 1.85
2699 3039 6.416631 TTGATAGCATCTATCAGTGAGCTT 57.583 37.500 14.03 0.00 35.62 3.74
2752 3092 7.362920 GGAGCTTTGGAAATAATTCAGCAAGTA 60.363 37.037 4.67 0.00 35.58 2.24
2753 3093 6.350629 AGCTTTGGAAATAATTCAGCAAGT 57.649 33.333 4.67 0.00 35.58 3.16
2754 3094 5.809051 GGAGCTTTGGAAATAATTCAGCAAG 59.191 40.000 4.67 0.00 35.58 4.01
2755 3095 5.245751 TGGAGCTTTGGAAATAATTCAGCAA 59.754 36.000 4.67 0.00 35.58 3.91
2757 3097 5.329035 TGGAGCTTTGGAAATAATTCAGC 57.671 39.130 0.00 0.00 37.29 4.26
2758 3098 7.277098 CACATTGGAGCTTTGGAAATAATTCAG 59.723 37.037 0.00 0.00 37.29 3.02
2759 3099 7.098477 CACATTGGAGCTTTGGAAATAATTCA 58.902 34.615 0.00 0.00 37.29 2.57
2760 3100 6.036408 GCACATTGGAGCTTTGGAAATAATTC 59.964 38.462 0.00 0.00 34.66 2.17
2761 3101 5.876460 GCACATTGGAGCTTTGGAAATAATT 59.124 36.000 0.00 0.00 0.00 1.40
2768 3108 1.614903 CAAGCACATTGGAGCTTTGGA 59.385 47.619 13.74 0.00 46.74 3.53
2775 3115 0.458669 GGCCATCAAGCACATTGGAG 59.541 55.000 0.00 0.00 39.54 3.86
2829 3169 3.269381 AGATTAGTGCCCCCAAATCTTCA 59.731 43.478 0.00 0.00 35.65 3.02
2856 3196 5.510671 CACAACTGTAGTAAGGTTTTGCAG 58.489 41.667 0.00 0.00 0.00 4.41
2881 3221 8.716646 TCCTACAACATTGTGAATATGTACAG 57.283 34.615 7.53 0.00 42.31 2.74
2900 3240 9.283768 CACTAACAATATAATGCCAATCCTACA 57.716 33.333 0.00 0.00 0.00 2.74
2970 3318 9.064804 CATTATGTACAATTTAACTGCACTGTG 57.935 33.333 0.00 2.76 0.00 3.66
3009 3380 2.224475 ACATGATCTGCAGGCCTGATAC 60.224 50.000 37.21 19.19 32.92 2.24
3014 3385 0.844660 ATGACATGATCTGCAGGCCT 59.155 50.000 15.13 0.00 0.00 5.19
3079 3455 9.739276 AAGTTGAATTTCAAGATACCACTATGA 57.261 29.630 12.02 0.00 37.00 2.15
3084 3460 6.446318 TGCAAGTTGAATTTCAAGATACCAC 58.554 36.000 12.02 0.00 37.00 4.16
3161 3537 6.189859 TCAATGTTCAGGAAAGAGCCAATAT 58.810 36.000 0.00 0.00 0.00 1.28
3166 3542 5.163612 GGTATTCAATGTTCAGGAAAGAGCC 60.164 44.000 0.00 0.00 0.00 4.70
3182 3558 8.630054 AAGTAAAGTTAGCACATGGTATTCAA 57.370 30.769 0.00 0.00 0.00 2.69
3188 3564 8.807948 ATTCATAAGTAAAGTTAGCACATGGT 57.192 30.769 0.00 0.00 0.00 3.55
3244 3621 8.482852 AAGGCAAAGGTTAGCATAATATCAAT 57.517 30.769 0.00 0.00 0.00 2.57
3248 3625 8.760980 TTGTAAGGCAAAGGTTAGCATAATAT 57.239 30.769 0.00 0.00 33.53 1.28
3257 3634 9.528489 AAGAAATATCTTGTAAGGCAAAGGTTA 57.472 29.630 0.00 0.00 44.25 2.85
3317 3694 1.934589 TTGCAAGGGATGACGATACG 58.065 50.000 0.00 0.00 0.00 3.06
3323 3700 2.229792 TCACACTTTGCAAGGGATGAC 58.770 47.619 13.65 0.00 35.35 3.06
3340 3717 2.147958 TGTTGCCCGTTACAGAATCAC 58.852 47.619 0.00 0.00 0.00 3.06
3362 3739 0.979187 ATGGCAATGGCTTGAAGGGG 60.979 55.000 8.59 0.00 40.87 4.79
3394 3771 2.957402 AACTTGAGATCTTGGGTGCA 57.043 45.000 0.00 0.00 0.00 4.57
3512 3889 1.081906 CGACCACATGTTGTGCAGC 60.082 57.895 7.40 0.00 46.51 5.25
3554 3931 4.487948 CAAACTGTTGCAAGTATGGATGG 58.512 43.478 0.00 0.00 0.00 3.51
3626 4003 6.099990 AGACAGTCATGAAGATCATCAGGAAT 59.900 38.462 15.97 12.69 41.27 3.01
3987 4364 4.334203 AGCTAGTTCTCTATCTCACACACG 59.666 45.833 0.00 0.00 0.00 4.49
4101 4478 1.759445 ACTGTCAACACTGCAGAGTCT 59.241 47.619 23.35 6.92 33.51 3.24
4166 4543 4.744795 ACCAAGCCACACACAAAATTTA 57.255 36.364 0.00 0.00 0.00 1.40
4226 4603 2.291741 GCTCCAACATAAGCATACTGGC 59.708 50.000 0.00 0.00 38.42 4.85
4253 4647 9.660180 GAAACACAATAAGAGGAAGAATAGACT 57.340 33.333 0.00 0.00 0.00 3.24
4254 4648 8.884726 GGAAACACAATAAGAGGAAGAATAGAC 58.115 37.037 0.00 0.00 0.00 2.59
4255 4649 8.826765 AGGAAACACAATAAGAGGAAGAATAGA 58.173 33.333 0.00 0.00 0.00 1.98
4256 4650 9.454859 AAGGAAACACAATAAGAGGAAGAATAG 57.545 33.333 0.00 0.00 0.00 1.73
4257 4651 9.807921 AAAGGAAACACAATAAGAGGAAGAATA 57.192 29.630 0.00 0.00 0.00 1.75
4258 4652 8.579863 CAAAGGAAACACAATAAGAGGAAGAAT 58.420 33.333 0.00 0.00 0.00 2.40
4259 4653 7.777910 TCAAAGGAAACACAATAAGAGGAAGAA 59.222 33.333 0.00 0.00 0.00 2.52
4260 4654 7.287061 TCAAAGGAAACACAATAAGAGGAAGA 58.713 34.615 0.00 0.00 0.00 2.87
4261 4655 7.510549 TCAAAGGAAACACAATAAGAGGAAG 57.489 36.000 0.00 0.00 0.00 3.46
4262 4656 6.016276 GCTCAAAGGAAACACAATAAGAGGAA 60.016 38.462 0.00 0.00 0.00 3.36
4263 4657 5.473504 GCTCAAAGGAAACACAATAAGAGGA 59.526 40.000 0.00 0.00 0.00 3.71
4264 4658 5.474876 AGCTCAAAGGAAACACAATAAGAGG 59.525 40.000 0.00 0.00 0.00 3.69
4265 4659 6.016777 ACAGCTCAAAGGAAACACAATAAGAG 60.017 38.462 0.00 0.00 0.00 2.85
4266 4660 5.827797 ACAGCTCAAAGGAAACACAATAAGA 59.172 36.000 0.00 0.00 0.00 2.10
4267 4661 6.076981 ACAGCTCAAAGGAAACACAATAAG 57.923 37.500 0.00 0.00 0.00 1.73
4268 4662 6.096141 TGAACAGCTCAAAGGAAACACAATAA 59.904 34.615 0.00 0.00 0.00 1.40
4331 4725 3.242739 CCATAGTGAACGGCTTAACATGC 60.243 47.826 0.00 0.00 0.00 4.06
4436 4830 2.170607 TGGCTTAGATCCCTGCAAGTAC 59.829 50.000 0.00 0.00 0.00 2.73
4437 4831 2.435805 CTGGCTTAGATCCCTGCAAGTA 59.564 50.000 0.00 0.00 0.00 2.24
4438 4832 1.211457 CTGGCTTAGATCCCTGCAAGT 59.789 52.381 0.00 0.00 0.00 3.16
4439 4833 1.211457 ACTGGCTTAGATCCCTGCAAG 59.789 52.381 4.79 4.79 33.06 4.01
4440 4834 1.289160 ACTGGCTTAGATCCCTGCAA 58.711 50.000 0.00 0.00 0.00 4.08
4441 4835 1.289160 AACTGGCTTAGATCCCTGCA 58.711 50.000 0.00 0.00 0.00 4.41
4442 4836 2.436173 AGTAACTGGCTTAGATCCCTGC 59.564 50.000 0.00 0.00 0.00 4.85
4443 4837 3.181461 CCAGTAACTGGCTTAGATCCCTG 60.181 52.174 0.00 0.00 45.13 4.45
4444 4838 3.041946 CCAGTAACTGGCTTAGATCCCT 58.958 50.000 0.00 0.00 45.13 4.20
4445 4839 3.477210 CCAGTAACTGGCTTAGATCCC 57.523 52.381 0.00 0.00 45.13 3.85
4456 4850 4.336889 TGACACTTTCCTCCAGTAACTG 57.663 45.455 0.00 0.00 0.00 3.16
4457 4851 6.681729 TTATGACACTTTCCTCCAGTAACT 57.318 37.500 0.00 0.00 0.00 2.24
4458 4852 7.923414 AATTATGACACTTTCCTCCAGTAAC 57.077 36.000 0.00 0.00 0.00 2.50
4459 4853 8.822805 AGTAATTATGACACTTTCCTCCAGTAA 58.177 33.333 0.00 0.00 0.00 2.24
4460 4854 8.258007 CAGTAATTATGACACTTTCCTCCAGTA 58.742 37.037 0.00 0.00 0.00 2.74
4461 4855 7.106239 CAGTAATTATGACACTTTCCTCCAGT 58.894 38.462 0.00 0.00 0.00 4.00
4462 4856 6.540189 CCAGTAATTATGACACTTTCCTCCAG 59.460 42.308 0.00 0.00 0.00 3.86
4463 4857 6.214615 TCCAGTAATTATGACACTTTCCTCCA 59.785 38.462 0.00 0.00 0.00 3.86
4464 4858 6.650120 TCCAGTAATTATGACACTTTCCTCC 58.350 40.000 0.00 0.00 0.00 4.30
4465 4859 7.442666 GGATCCAGTAATTATGACACTTTCCTC 59.557 40.741 6.95 0.00 0.00 3.71
4466 4860 7.283329 GGATCCAGTAATTATGACACTTTCCT 58.717 38.462 6.95 0.00 0.00 3.36
4467 4861 6.202954 CGGATCCAGTAATTATGACACTTTCC 59.797 42.308 13.41 0.00 0.00 3.13
4468 4862 6.202954 CCGGATCCAGTAATTATGACACTTTC 59.797 42.308 13.41 0.00 0.00 2.62
4469 4863 6.055588 CCGGATCCAGTAATTATGACACTTT 58.944 40.000 13.41 0.00 0.00 2.66
4470 4864 5.611374 CCGGATCCAGTAATTATGACACTT 58.389 41.667 13.41 0.00 0.00 3.16
4471 4865 4.503296 GCCGGATCCAGTAATTATGACACT 60.503 45.833 13.41 0.00 0.00 3.55
4472 4866 3.746492 GCCGGATCCAGTAATTATGACAC 59.254 47.826 13.41 0.00 0.00 3.67
4473 4867 3.646162 AGCCGGATCCAGTAATTATGACA 59.354 43.478 13.41 0.00 0.00 3.58
4474 4868 4.273148 AGCCGGATCCAGTAATTATGAC 57.727 45.455 13.41 0.00 0.00 3.06
4475 4869 4.641396 CAAGCCGGATCCAGTAATTATGA 58.359 43.478 13.41 0.00 0.00 2.15
4476 4870 3.189287 GCAAGCCGGATCCAGTAATTATG 59.811 47.826 13.41 0.00 0.00 1.90
4477 4871 3.412386 GCAAGCCGGATCCAGTAATTAT 58.588 45.455 13.41 0.00 0.00 1.28
4478 4872 2.486548 GGCAAGCCGGATCCAGTAATTA 60.487 50.000 13.41 0.00 0.00 1.40
4479 4873 1.680338 GCAAGCCGGATCCAGTAATT 58.320 50.000 13.41 0.00 0.00 1.40
4480 4874 0.179018 GGCAAGCCGGATCCAGTAAT 60.179 55.000 13.41 0.00 0.00 1.89
4481 4875 1.223487 GGCAAGCCGGATCCAGTAA 59.777 57.895 13.41 0.00 0.00 2.24
4482 4876 1.689233 AGGCAAGCCGGATCCAGTA 60.689 57.895 13.41 0.00 41.95 2.74
4483 4877 3.011517 AGGCAAGCCGGATCCAGT 61.012 61.111 13.41 0.00 41.95 4.00
4484 4878 2.515523 CAGGCAAGCCGGATCCAG 60.516 66.667 13.41 0.36 41.95 3.86
4485 4879 4.802051 GCAGGCAAGCCGGATCCA 62.802 66.667 15.46 0.00 41.95 3.41
4486 4880 4.496336 AGCAGGCAAGCCGGATCC 62.496 66.667 15.46 0.00 41.95 3.36
4487 4881 2.439156 AAGCAGGCAAGCCGGATC 60.439 61.111 15.46 0.00 41.95 3.36
4488 4882 2.439156 GAAGCAGGCAAGCCGGAT 60.439 61.111 15.46 5.71 41.95 4.18
4489 4883 4.722700 GGAAGCAGGCAAGCCGGA 62.723 66.667 15.46 0.00 41.95 5.14
4490 4884 4.729918 AGGAAGCAGGCAAGCCGG 62.730 66.667 6.88 6.88 41.95 6.13
4491 4885 3.130160 GAGGAAGCAGGCAAGCCG 61.130 66.667 5.28 2.12 41.95 5.52
4492 4886 2.753446 GGAGGAAGCAGGCAAGCC 60.753 66.667 2.02 2.02 34.23 4.35
4493 4887 2.753446 GGGAGGAAGCAGGCAAGC 60.753 66.667 0.00 0.00 0.00 4.01
4494 4888 1.378250 CAGGGAGGAAGCAGGCAAG 60.378 63.158 0.00 0.00 0.00 4.01
4495 4889 2.156098 ACAGGGAGGAAGCAGGCAA 61.156 57.895 0.00 0.00 0.00 4.52
4496 4890 2.530151 ACAGGGAGGAAGCAGGCA 60.530 61.111 0.00 0.00 0.00 4.75
4497 4891 2.045536 CACAGGGAGGAAGCAGGC 60.046 66.667 0.00 0.00 0.00 4.85
4498 4892 2.045536 GCACAGGGAGGAAGCAGG 60.046 66.667 0.00 0.00 0.00 4.85
4499 4893 1.078567 GAGCACAGGGAGGAAGCAG 60.079 63.158 0.00 0.00 0.00 4.24
4500 4894 2.596851 GGAGCACAGGGAGGAAGCA 61.597 63.158 0.00 0.00 0.00 3.91
4501 4895 2.270527 GGAGCACAGGGAGGAAGC 59.729 66.667 0.00 0.00 0.00 3.86
4502 4896 1.277580 ATGGGAGCACAGGGAGGAAG 61.278 60.000 0.00 0.00 0.00 3.46
4503 4897 0.846427 AATGGGAGCACAGGGAGGAA 60.846 55.000 0.00 0.00 0.00 3.36
4504 4898 1.229951 AATGGGAGCACAGGGAGGA 60.230 57.895 0.00 0.00 0.00 3.71
4505 4899 1.225704 GAATGGGAGCACAGGGAGG 59.774 63.158 0.00 0.00 0.00 4.30
4506 4900 1.153289 CGAATGGGAGCACAGGGAG 60.153 63.158 0.00 0.00 0.00 4.30
4507 4901 1.918293 ACGAATGGGAGCACAGGGA 60.918 57.895 0.00 0.00 0.00 4.20
4508 4902 1.746615 CACGAATGGGAGCACAGGG 60.747 63.158 0.00 0.00 0.00 4.45
4509 4903 2.401766 GCACGAATGGGAGCACAGG 61.402 63.158 0.00 0.00 0.00 4.00
4510 4904 1.364626 GAGCACGAATGGGAGCACAG 61.365 60.000 0.00 0.00 0.00 3.66
4511 4905 1.375908 GAGCACGAATGGGAGCACA 60.376 57.895 0.00 0.00 0.00 4.57
4512 4906 2.109126 GGAGCACGAATGGGAGCAC 61.109 63.158 0.00 0.00 0.00 4.40
4513 4907 2.268920 GGAGCACGAATGGGAGCA 59.731 61.111 0.00 0.00 0.00 4.26
4514 4908 2.514824 GGGAGCACGAATGGGAGC 60.515 66.667 0.00 0.00 0.00 4.70
4515 4909 1.450312 GTGGGAGCACGAATGGGAG 60.450 63.158 0.00 0.00 0.00 4.30
4516 4910 1.488705 AAGTGGGAGCACGAATGGGA 61.489 55.000 0.00 0.00 0.00 4.37
4517 4911 1.002134 AAGTGGGAGCACGAATGGG 60.002 57.895 0.00 0.00 0.00 4.00
4518 4912 0.321564 TGAAGTGGGAGCACGAATGG 60.322 55.000 0.00 0.00 0.00 3.16
4519 4913 1.667724 GATGAAGTGGGAGCACGAATG 59.332 52.381 0.00 0.00 0.00 2.67
4520 4914 1.407437 GGATGAAGTGGGAGCACGAAT 60.407 52.381 0.00 0.00 0.00 3.34
4521 4915 0.036388 GGATGAAGTGGGAGCACGAA 60.036 55.000 0.00 0.00 0.00 3.85
4522 4916 0.904865 AGGATGAAGTGGGAGCACGA 60.905 55.000 0.00 0.00 0.00 4.35
4523 4917 0.824109 TAGGATGAAGTGGGAGCACG 59.176 55.000 0.00 0.00 0.00 5.34
4524 4918 1.471676 CGTAGGATGAAGTGGGAGCAC 60.472 57.143 0.00 0.00 0.00 4.40
4525 4919 0.824109 CGTAGGATGAAGTGGGAGCA 59.176 55.000 0.00 0.00 0.00 4.26
4526 4920 1.112113 TCGTAGGATGAAGTGGGAGC 58.888 55.000 0.00 0.00 0.00 4.70
4527 4921 2.099921 CAGTCGTAGGATGAAGTGGGAG 59.900 54.545 0.00 0.00 0.00 4.30
4528 4922 2.100197 CAGTCGTAGGATGAAGTGGGA 58.900 52.381 0.00 0.00 0.00 4.37
4529 4923 1.825474 ACAGTCGTAGGATGAAGTGGG 59.175 52.381 0.00 0.00 0.00 4.61
4530 4924 2.755655 AGACAGTCGTAGGATGAAGTGG 59.244 50.000 0.00 0.00 0.00 4.00
4531 4925 4.442375 AAGACAGTCGTAGGATGAAGTG 57.558 45.455 0.00 0.00 0.00 3.16
4532 4926 5.470047 AAAAGACAGTCGTAGGATGAAGT 57.530 39.130 0.00 0.00 0.00 3.01
4562 4956 9.439461 TCAGGAGGAAAGATGATTAGATTAGAA 57.561 33.333 0.00 0.00 0.00 2.10
4563 4957 9.612879 ATCAGGAGGAAAGATGATTAGATTAGA 57.387 33.333 0.00 0.00 0.00 2.10
4566 4960 9.933240 AAAATCAGGAGGAAAGATGATTAGATT 57.067 29.630 0.15 0.00 40.54 2.40
4570 4964 9.632638 CCTTAAAATCAGGAGGAAAGATGATTA 57.367 33.333 0.15 0.00 40.54 1.75
4571 4965 7.562821 CCCTTAAAATCAGGAGGAAAGATGATT 59.437 37.037 0.00 0.00 42.61 2.57
4572 4966 7.065504 CCCTTAAAATCAGGAGGAAAGATGAT 58.934 38.462 0.00 0.00 32.41 2.45
4573 4967 6.426587 CCCTTAAAATCAGGAGGAAAGATGA 58.573 40.000 0.00 0.00 32.41 2.92
4574 4968 5.595952 CCCCTTAAAATCAGGAGGAAAGATG 59.404 44.000 0.00 0.00 32.41 2.90
4575 4969 5.341200 CCCCCTTAAAATCAGGAGGAAAGAT 60.341 44.000 0.00 0.00 30.49 2.40
4576 4970 4.017499 CCCCCTTAAAATCAGGAGGAAAGA 60.017 45.833 0.00 0.00 30.49 2.52
4577 4971 4.264397 ACCCCCTTAAAATCAGGAGGAAAG 60.264 45.833 0.00 0.00 32.84 2.62
4578 4972 3.665618 ACCCCCTTAAAATCAGGAGGAAA 59.334 43.478 0.00 0.00 32.84 3.13
4579 4973 3.011257 CACCCCCTTAAAATCAGGAGGAA 59.989 47.826 0.00 0.00 32.84 3.36
4580 4974 2.580783 CACCCCCTTAAAATCAGGAGGA 59.419 50.000 0.00 0.00 32.84 3.71
4581 4975 2.358195 CCACCCCCTTAAAATCAGGAGG 60.358 54.545 0.00 0.00 35.35 4.30
4582 4976 2.358195 CCCACCCCCTTAAAATCAGGAG 60.358 54.545 0.00 0.00 32.41 3.69
4583 4977 1.643811 CCCACCCCCTTAAAATCAGGA 59.356 52.381 0.00 0.00 32.41 3.86
4584 4978 1.342975 CCCCACCCCCTTAAAATCAGG 60.343 57.143 0.00 0.00 0.00 3.86
4585 4979 1.964830 GCCCCACCCCCTTAAAATCAG 60.965 57.143 0.00 0.00 0.00 2.90
4586 4980 0.041982 GCCCCACCCCCTTAAAATCA 59.958 55.000 0.00 0.00 0.00 2.57
4587 4981 0.689745 GGCCCCACCCCCTTAAAATC 60.690 60.000 0.00 0.00 0.00 2.17
4588 4982 1.394557 GGCCCCACCCCCTTAAAAT 59.605 57.895 0.00 0.00 0.00 1.82
4589 4983 2.863275 GGCCCCACCCCCTTAAAA 59.137 61.111 0.00 0.00 0.00 1.52
4590 4984 3.663806 CGGCCCCACCCCCTTAAA 61.664 66.667 0.00 0.00 33.26 1.52
4598 4992 2.219449 AAATAAGGTCCGGCCCCACC 62.219 60.000 9.45 9.45 38.26 4.61
4599 4993 0.323999 AAAATAAGGTCCGGCCCCAC 60.324 55.000 0.00 0.00 38.26 4.61
4600 4994 0.323908 CAAAATAAGGTCCGGCCCCA 60.324 55.000 0.00 0.00 38.26 4.96
4601 4995 0.323999 ACAAAATAAGGTCCGGCCCC 60.324 55.000 0.00 0.00 38.26 5.80
4602 4996 1.475280 GAACAAAATAAGGTCCGGCCC 59.525 52.381 10.82 1.57 38.26 5.80
4603 4997 1.475280 GGAACAAAATAAGGTCCGGCC 59.525 52.381 0.00 0.59 37.58 6.13
4604 4998 2.164338 TGGAACAAAATAAGGTCCGGC 58.836 47.619 0.00 0.00 31.92 6.13
4618 5012 6.334102 ACGTGGCTTTATTTAATTGGAACA 57.666 33.333 0.00 0.00 0.00 3.18
4619 5013 7.695201 GTCTACGTGGCTTTATTTAATTGGAAC 59.305 37.037 0.00 0.00 0.00 3.62
4620 5014 7.413219 CGTCTACGTGGCTTTATTTAATTGGAA 60.413 37.037 0.00 0.00 34.11 3.53
4621 5015 6.036300 CGTCTACGTGGCTTTATTTAATTGGA 59.964 38.462 0.00 0.00 34.11 3.53
4622 5016 6.189567 CGTCTACGTGGCTTTATTTAATTGG 58.810 40.000 0.00 0.00 34.11 3.16
4623 5017 6.189567 CCGTCTACGTGGCTTTATTTAATTG 58.810 40.000 0.00 0.00 37.74 2.32
4624 5018 5.295045 CCCGTCTACGTGGCTTTATTTAATT 59.705 40.000 0.00 0.00 37.74 1.40
4625 5019 4.812626 CCCGTCTACGTGGCTTTATTTAAT 59.187 41.667 0.00 0.00 37.74 1.40
4626 5020 4.081752 TCCCGTCTACGTGGCTTTATTTAA 60.082 41.667 0.00 0.00 37.74 1.52
4627 5021 3.446873 TCCCGTCTACGTGGCTTTATTTA 59.553 43.478 0.00 0.00 37.74 1.40
4628 5022 2.234414 TCCCGTCTACGTGGCTTTATTT 59.766 45.455 0.00 0.00 37.74 1.40
4629 5023 1.826720 TCCCGTCTACGTGGCTTTATT 59.173 47.619 0.00 0.00 37.74 1.40
4630 5024 1.407979 CTCCCGTCTACGTGGCTTTAT 59.592 52.381 0.00 0.00 37.74 1.40
4631 5025 0.813184 CTCCCGTCTACGTGGCTTTA 59.187 55.000 0.00 0.00 37.74 1.85
4632 5026 1.590147 CTCCCGTCTACGTGGCTTT 59.410 57.895 0.00 0.00 37.74 3.51
4633 5027 3.003113 GCTCCCGTCTACGTGGCTT 62.003 63.158 0.00 0.00 37.74 4.35
4634 5028 3.450115 GCTCCCGTCTACGTGGCT 61.450 66.667 0.00 0.00 37.74 4.75
4635 5029 3.755628 TGCTCCCGTCTACGTGGC 61.756 66.667 0.00 3.68 37.74 5.01
4636 5030 2.181021 GTGCTCCCGTCTACGTGG 59.819 66.667 0.00 0.00 37.74 4.94
4637 5031 2.202440 CGTGCTCCCGTCTACGTG 60.202 66.667 0.00 0.00 37.74 4.49
4638 5032 3.437795 CCGTGCTCCCGTCTACGT 61.438 66.667 1.41 0.00 37.74 3.57
4639 5033 2.478890 ATCCGTGCTCCCGTCTACG 61.479 63.158 0.00 0.00 39.44 3.51
4640 5034 1.065928 CATCCGTGCTCCCGTCTAC 59.934 63.158 0.00 0.00 0.00 2.59
4641 5035 2.125326 CCATCCGTGCTCCCGTCTA 61.125 63.158 0.00 0.00 0.00 2.59
4642 5036 3.461773 CCATCCGTGCTCCCGTCT 61.462 66.667 0.00 0.00 0.00 4.18
4643 5037 4.530857 CCCATCCGTGCTCCCGTC 62.531 72.222 0.00 0.00 0.00 4.79
4647 5041 4.408821 TGTGCCCATCCGTGCTCC 62.409 66.667 0.00 0.00 0.00 4.70
4648 5042 3.127533 GTGTGCCCATCCGTGCTC 61.128 66.667 0.00 0.00 0.00 4.26
4651 5045 3.118454 GTCGTGTGCCCATCCGTG 61.118 66.667 0.00 0.00 0.00 4.94
4652 5046 4.735132 CGTCGTGTGCCCATCCGT 62.735 66.667 0.00 0.00 0.00 4.69
4661 5055 3.680786 TCTGCTCCCCGTCGTGTG 61.681 66.667 0.00 0.00 0.00 3.82
4662 5056 3.681835 GTCTGCTCCCCGTCGTGT 61.682 66.667 0.00 0.00 0.00 4.49
4663 5057 3.220999 TTGTCTGCTCCCCGTCGTG 62.221 63.158 0.00 0.00 0.00 4.35
4664 5058 2.915659 TTGTCTGCTCCCCGTCGT 60.916 61.111 0.00 0.00 0.00 4.34
4665 5059 2.125912 CTTGTCTGCTCCCCGTCG 60.126 66.667 0.00 0.00 0.00 5.12
4666 5060 1.079750 GACTTGTCTGCTCCCCGTC 60.080 63.158 0.00 0.00 0.00 4.79
4667 5061 1.122019 AAGACTTGTCTGCTCCCCGT 61.122 55.000 3.87 0.00 0.00 5.28
4668 5062 0.671781 CAAGACTTGTCTGCTCCCCG 60.672 60.000 7.05 0.00 0.00 5.73
4669 5063 0.398318 ACAAGACTTGTCTGCTCCCC 59.602 55.000 15.23 0.00 40.56 4.81
4680 5074 2.548067 CCTGCAAGTACGGACAAGACTT 60.548 50.000 0.00 0.00 33.71 3.01
4681 5075 1.000955 CCTGCAAGTACGGACAAGACT 59.999 52.381 0.00 0.00 0.00 3.24
4682 5076 1.270147 ACCTGCAAGTACGGACAAGAC 60.270 52.381 0.00 0.00 0.00 3.01
4683 5077 1.045407 ACCTGCAAGTACGGACAAGA 58.955 50.000 0.00 0.00 0.00 3.02
4684 5078 1.531149 CAACCTGCAAGTACGGACAAG 59.469 52.381 0.00 0.00 0.00 3.16
4685 5079 1.588674 CAACCTGCAAGTACGGACAA 58.411 50.000 0.00 0.00 0.00 3.18
4686 5080 0.882927 GCAACCTGCAAGTACGGACA 60.883 55.000 0.00 0.00 44.26 4.02
4687 5081 1.866925 GCAACCTGCAAGTACGGAC 59.133 57.895 0.00 0.00 44.26 4.79
4688 5082 4.371975 GCAACCTGCAAGTACGGA 57.628 55.556 0.00 0.00 44.26 4.69
4757 5151 5.534654 TGTCCTGCAAAAACTTGTAATAGCT 59.465 36.000 0.00 0.00 0.00 3.32
4758 5152 5.629435 GTGTCCTGCAAAAACTTGTAATAGC 59.371 40.000 0.00 0.00 0.00 2.97
4759 5153 6.734137 TGTGTCCTGCAAAAACTTGTAATAG 58.266 36.000 0.00 0.00 0.00 1.73
4760 5154 6.238897 CCTGTGTCCTGCAAAAACTTGTAATA 60.239 38.462 0.00 0.00 0.00 0.98
4761 5155 5.451798 CCTGTGTCCTGCAAAAACTTGTAAT 60.452 40.000 0.00 0.00 0.00 1.89
4762 5156 4.142271 CCTGTGTCCTGCAAAAACTTGTAA 60.142 41.667 0.00 0.00 0.00 2.41
4763 5157 3.380004 CCTGTGTCCTGCAAAAACTTGTA 59.620 43.478 0.00 0.00 0.00 2.41
4764 5158 2.166254 CCTGTGTCCTGCAAAAACTTGT 59.834 45.455 0.00 0.00 0.00 3.16
4765 5159 2.813061 CCTGTGTCCTGCAAAAACTTG 58.187 47.619 0.00 0.00 0.00 3.16
4766 5160 1.136891 GCCTGTGTCCTGCAAAAACTT 59.863 47.619 0.00 0.00 0.00 2.66
4767 5161 0.746659 GCCTGTGTCCTGCAAAAACT 59.253 50.000 0.00 0.00 0.00 2.66
5211 5775 8.520835 TCCGATTTATTCTCTTCATTCATACG 57.479 34.615 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.