Multiple sequence alignment - TraesCS6A01G228000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G228000 chr6A 100.000 4249 0 0 1 4249 430331462 430327214 0.000000e+00 7847
1 TraesCS6A01G228000 chr6A 100.000 2405 0 0 4491 6895 430326972 430324568 0.000000e+00 4442
2 TraesCS6A01G228000 chr6B 91.964 2302 92 35 32 2287 455430319 455432573 0.000000e+00 3140
3 TraesCS6A01G228000 chr6B 88.789 1115 57 22 5616 6670 455434544 455435650 0.000000e+00 1304
4 TraesCS6A01G228000 chr6B 91.554 817 33 8 3377 4182 455432577 455433368 0.000000e+00 1094
5 TraesCS6A01G228000 chr6B 88.668 653 32 15 4491 5138 455433525 455434140 0.000000e+00 758
6 TraesCS6A01G228000 chr6B 90.164 488 18 11 5134 5614 455434178 455434642 5.910000e-170 608
7 TraesCS6A01G228000 chr6D 95.083 1749 61 10 1 1739 292387828 292389561 0.000000e+00 2730
8 TraesCS6A01G228000 chr6D 93.675 1423 63 10 2723 4133 292391776 292393183 0.000000e+00 2104
9 TraesCS6A01G228000 chr6D 94.623 967 32 9 1775 2729 292389560 292390518 0.000000e+00 1480
10 TraesCS6A01G228000 chr6D 90.089 1120 57 24 5617 6687 292394911 292396025 0.000000e+00 1404
11 TraesCS6A01G228000 chr6D 94.155 633 33 4 4508 5138 292393828 292394458 0.000000e+00 961
12 TraesCS6A01G228000 chr6D 94.651 430 11 6 5134 5554 292394496 292394922 0.000000e+00 656
13 TraesCS6A01G228000 chr6D 92.784 97 5 2 5515 5611 292394911 292395005 9.330000e-29 139
14 TraesCS6A01G228000 chr5A 87.081 209 26 1 6687 6895 465123406 465123613 1.160000e-57 235
15 TraesCS6A01G228000 chr1D 85.572 201 23 3 2071 2270 72456347 72456542 9.060000e-49 206
16 TraesCS6A01G228000 chr1D 95.294 85 4 0 6811 6895 367162529 367162613 1.210000e-27 135
17 TraesCS6A01G228000 chr2B 85.561 187 24 3 6689 6874 150435577 150435393 7.060000e-45 193
18 TraesCS6A01G228000 chr4D 91.200 125 11 0 6687 6811 3393389 3393265 3.310000e-38 171
19 TraesCS6A01G228000 chr4D 95.506 89 4 0 6807 6895 447293819 447293731 7.210000e-30 143
20 TraesCS6A01G228000 chr3B 90.551 127 12 0 6687 6813 764316348 764316474 1.190000e-37 169
21 TraesCS6A01G228000 chr5D 91.057 123 11 0 6687 6809 397617417 397617539 4.280000e-37 167
22 TraesCS6A01G228000 chr5D 88.976 127 14 0 6687 6813 397941283 397941409 2.570000e-34 158
23 TraesCS6A01G228000 chr2D 80.952 210 37 2 6687 6895 84340811 84340604 5.530000e-36 163
24 TraesCS6A01G228000 chr2D 89.764 127 13 0 6687 6813 518183031 518183157 5.530000e-36 163
25 TraesCS6A01G228000 chr1B 89.764 127 13 0 6687 6813 504521388 504521514 5.530000e-36 163
26 TraesCS6A01G228000 chr3D 96.341 82 3 0 6814 6895 488863579 488863498 1.210000e-27 135
27 TraesCS6A01G228000 chr3D 95.122 82 4 0 6814 6895 529127161 529127242 5.610000e-26 130
28 TraesCS6A01G228000 chr3D 91.111 90 8 0 6803 6892 377915070 377915159 9.390000e-24 122
29 TraesCS6A01G228000 chr7D 95.181 83 4 0 6813 6895 34300830 34300912 1.560000e-26 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G228000 chr6A 430324568 430331462 6894 True 6144.500000 7847 100.0000 1 6895 2 chr6A.!!$R1 6894
1 TraesCS6A01G228000 chr6B 455430319 455435650 5331 False 1380.800000 3140 90.2278 32 6670 5 chr6B.!!$F1 6638
2 TraesCS6A01G228000 chr6D 292387828 292396025 8197 False 1353.428571 2730 93.5800 1 6687 7 chr6D.!!$F1 6686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
919 940 0.399949 TCCTCCGGTATGCCCTTCAT 60.400 55.0 0.00 0.0 39.17 2.57 F
2461 2511 0.321653 CAGGCCGTTTCCTAGCACTT 60.322 55.0 0.00 0.0 33.95 3.16 F
3352 4667 0.669318 TGACGACAGGACCGAAATGC 60.669 55.0 0.00 0.0 0.00 3.56 F
4622 6252 0.037326 TGCTCGGTCATTGTGGAGAC 60.037 55.0 5.85 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2824 4139 0.109723 AAGCCAGTTTCTACGCCCAA 59.890 50.0 0.0 0.0 0.0 4.12 R
3487 4804 0.321653 AACATGGTCGCTGGTTCCTC 60.322 55.0 0.0 0.0 0.0 3.71 R
4847 6477 0.611714 GGTACTTGGAGCTTTCGGGA 59.388 55.0 0.0 0.0 0.0 5.14 R
6593 8358 0.947244 CTGTGGTGTTGAGGTGAAGC 59.053 55.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 4.978083 AATCAAATGCTGTAGCTGGAAG 57.022 40.909 5.38 0.00 42.66 3.46
98 99 4.385358 AAAACTGCGTCAAATGGAAGTT 57.615 36.364 0.00 0.00 0.00 2.66
127 128 9.294614 TGTATATGCAGATTAAATTGCCACATA 57.705 29.630 0.00 4.63 39.54 2.29
137 138 4.803329 AATTGCCACATAGGAGGAGAAT 57.197 40.909 0.00 0.00 41.22 2.40
166 175 3.822996 CTCTGAAATACACGTCACGTCT 58.177 45.455 0.00 0.00 38.32 4.18
177 186 0.531200 GTCACGTCTACAGAAGGGGG 59.469 60.000 0.00 0.00 0.00 5.40
261 271 0.600255 CTGTGGACAGGACGTTGGTC 60.600 60.000 0.00 0.00 42.66 4.02
378 388 2.125350 CTCTCCAGCACCTTCCGC 60.125 66.667 0.00 0.00 0.00 5.54
611 627 2.282783 GGCGAAATGGTTGGGCCTT 61.283 57.895 4.53 0.00 40.59 4.35
653 669 2.887568 CAGTGCAGCGGTCGATCC 60.888 66.667 0.00 0.00 0.00 3.36
662 678 3.971894 GGTCGATCCTGGACCCAT 58.028 61.111 0.00 0.00 46.65 4.00
663 679 1.447643 GGTCGATCCTGGACCCATG 59.552 63.158 0.00 0.00 46.65 3.66
679 696 1.259609 CATGTGTCAGTGGGCCAAAT 58.740 50.000 8.40 0.00 0.00 2.32
811 832 3.842923 CTCCCGCACTGATCGCCT 61.843 66.667 0.00 0.00 0.00 5.52
843 864 0.458260 GGGAAGAAGAGCTCCGACTC 59.542 60.000 10.93 2.47 36.91 3.36
867 888 2.748647 CCCCAAAACCCTACCGCG 60.749 66.667 0.00 0.00 0.00 6.46
919 940 0.399949 TCCTCCGGTATGCCCTTCAT 60.400 55.000 0.00 0.00 39.17 2.57
933 956 1.274728 CCTTCATATCGCCCTCTCCTG 59.725 57.143 0.00 0.00 0.00 3.86
934 957 1.274728 CTTCATATCGCCCTCTCCTGG 59.725 57.143 0.00 0.00 0.00 4.45
935 958 1.188219 TCATATCGCCCTCTCCTGGC 61.188 60.000 0.00 0.00 45.70 4.85
936 959 1.915769 ATATCGCCCTCTCCTGGCC 60.916 63.158 0.00 0.00 46.48 5.36
937 960 2.393710 ATATCGCCCTCTCCTGGCCT 62.394 60.000 3.32 0.00 46.48 5.19
960 983 4.150454 CGCCTCTCCTCCCCTCCT 62.150 72.222 0.00 0.00 0.00 3.69
961 984 2.370633 GCCTCTCCTCCCCTCCTT 59.629 66.667 0.00 0.00 0.00 3.36
978 1001 2.813754 TCCTTTCTGACCGCTGATTTTG 59.186 45.455 0.00 0.00 0.00 2.44
1164 1187 3.304057 GCAAAGGTGACAAGTTAGACAGC 60.304 47.826 0.00 0.00 33.13 4.40
1183 1206 4.284490 ACAGCAACTCTGATCTGAACCTAA 59.716 41.667 3.72 0.00 45.72 2.69
1224 1250 1.734477 CCGCTGTTCGAGACCACAG 60.734 63.158 10.06 10.06 42.94 3.66
1279 1305 1.187974 TTCAAAGATGCAGGCCATGG 58.812 50.000 7.63 7.63 33.29 3.66
1284 1310 1.826921 GATGCAGGCCATGGTCTGG 60.827 63.158 39.96 25.10 46.89 3.86
1366 1395 1.714794 AATTGGCTCTCAGTTCGACG 58.285 50.000 0.00 0.00 0.00 5.12
1436 1472 5.414144 TCAAATGTGAAGTGTGTTGTTCTGA 59.586 36.000 0.00 0.00 0.00 3.27
1596 1632 6.837312 CATGGGAACTAGTATTAACCATGGA 58.163 40.000 21.47 0.00 46.16 3.41
1616 1652 8.458843 CCATGGATTTGTAAAAACTAGTACCAG 58.541 37.037 5.56 0.00 0.00 4.00
1816 1855 2.697751 AGTCTCTCTATCATGGCCACAC 59.302 50.000 8.16 0.00 0.00 3.82
1936 1979 6.706270 ACGATGGTAGGCTTGTCTTATATTTG 59.294 38.462 0.00 0.00 0.00 2.32
1937 1980 6.706270 CGATGGTAGGCTTGTCTTATATTTGT 59.294 38.462 0.00 0.00 0.00 2.83
1950 1993 6.953743 GTCTTATATTTGTATATTGCCGTGCG 59.046 38.462 0.00 0.00 0.00 5.34
2065 2113 7.717568 ACTGAACAACTAGTGCCTAGTATATG 58.282 38.462 13.24 11.05 45.28 1.78
2083 2131 7.922382 AGTATATGCAAGAGTTAATATGCCCT 58.078 34.615 0.00 0.00 38.00 5.19
2093 2142 5.448654 AGTTAATATGCCCTGCAATCTCAA 58.551 37.500 0.00 0.00 43.62 3.02
2215 2265 3.297134 ACAGACTTCCAAAGCTCCAAA 57.703 42.857 0.00 0.00 0.00 3.28
2314 2364 7.501844 AGTTAAGAACTAGCACCCAGATTATC 58.498 38.462 0.00 0.00 40.69 1.75
2345 2395 1.908340 CTGGAGGTCTTGGCTGAGGG 61.908 65.000 0.00 0.00 0.00 4.30
2358 2408 1.134551 GCTGAGGGACATGAGGTTCTC 60.135 57.143 0.00 0.00 33.46 2.87
2359 2409 1.135915 CTGAGGGACATGAGGTTCTCG 59.864 57.143 0.00 0.00 34.70 4.04
2461 2511 0.321653 CAGGCCGTTTCCTAGCACTT 60.322 55.000 0.00 0.00 33.95 3.16
2482 2533 5.422331 ACTTCAAGAGATGAATTAGGACCGA 59.578 40.000 0.00 0.00 46.62 4.69
2539 2590 2.519302 GTGCAACCTGCCCTGTGT 60.519 61.111 0.00 0.00 44.23 3.72
2616 2667 3.591977 AGCTATTGTACCCTTGTCCCTTT 59.408 43.478 0.00 0.00 0.00 3.11
2622 2673 5.586155 TGTACCCTTGTCCCTTTATGAAA 57.414 39.130 0.00 0.00 0.00 2.69
2630 2681 4.320870 TGTCCCTTTATGAAACGGAGAAC 58.679 43.478 0.00 0.00 0.00 3.01
2638 2689 1.071699 TGAAACGGAGAACCCTCTTGG 59.928 52.381 0.00 0.00 39.38 3.61
2741 4056 1.691976 TGTAAGGTACTGCAGTGCACT 59.308 47.619 31.81 23.53 40.86 4.40
2746 4061 1.006220 TACTGCAGTGCACTGACCG 60.006 57.895 43.32 30.97 46.59 4.79
2769 4084 2.607282 GCTCCGGTAGGTATGAATGTCG 60.607 54.545 0.00 0.00 39.05 4.35
2770 4085 1.958579 TCCGGTAGGTATGAATGTCGG 59.041 52.381 0.00 0.00 39.05 4.79
2774 4089 3.391049 GGTAGGTATGAATGTCGGCTTC 58.609 50.000 0.00 0.00 0.00 3.86
2787 4102 2.982130 GCTTCGCCAAGAGGAGGA 59.018 61.111 0.00 0.00 36.89 3.71
2788 4103 1.296715 GCTTCGCCAAGAGGAGGAA 59.703 57.895 0.00 0.00 36.89 3.36
2800 4115 1.213926 GAGGAGGAATGCCAAGGTCAT 59.786 52.381 0.00 0.00 36.29 3.06
2824 4139 4.130118 GGACAACTTCTCATGAACACACT 58.870 43.478 0.00 0.00 0.00 3.55
2867 4182 5.308014 ACAATTTGTCATCTGAGTGTGCTA 58.692 37.500 0.00 0.00 0.00 3.49
2870 4185 5.929697 TTTGTCATCTGAGTGTGCTAAAG 57.070 39.130 0.00 0.00 0.00 1.85
2886 4201 5.710613 GCTAAAGCAGATCAAGAGTGTAC 57.289 43.478 0.00 0.00 41.59 2.90
2887 4202 5.415221 GCTAAAGCAGATCAAGAGTGTACT 58.585 41.667 0.00 0.00 41.59 2.73
2888 4203 5.872070 GCTAAAGCAGATCAAGAGTGTACTT 59.128 40.000 0.00 0.00 41.59 2.24
2899 4214 0.865769 AGTGTACTTCTTTTGCGCGG 59.134 50.000 8.83 0.00 0.00 6.46
2908 4223 3.888079 TTTTGCGCGGCGACAATGG 62.888 57.895 28.54 0.00 0.00 3.16
2917 4232 2.700773 GCGACAATGGCCCTGGAAC 61.701 63.158 0.00 0.00 0.00 3.62
2957 4272 2.355513 CCATGAAGTACTGAAGCTGGCT 60.356 50.000 0.00 0.00 0.00 4.75
2966 4281 3.102972 ACTGAAGCTGGCTGAGATCTTA 58.897 45.455 0.00 0.00 0.00 2.10
3066 4381 8.255394 TCATCGACATAATAAACCAGCATATG 57.745 34.615 0.00 0.00 0.00 1.78
3089 4404 1.679311 GTGACACTGCCATGGGAGA 59.321 57.895 36.95 14.21 37.03 3.71
3110 4425 5.624159 AGAAGATGAACAAAGATGTGTCCA 58.376 37.500 0.00 0.00 40.46 4.02
3111 4426 5.471456 AGAAGATGAACAAAGATGTGTCCAC 59.529 40.000 0.00 0.00 40.46 4.02
3224 4539 3.126001 TGAGCACGATCTTCAAAACCT 57.874 42.857 0.00 0.00 0.00 3.50
3227 4542 1.401539 GCACGATCTTCAAAACCTGGC 60.402 52.381 0.00 0.00 0.00 4.85
3228 4543 2.154462 CACGATCTTCAAAACCTGGCT 58.846 47.619 0.00 0.00 0.00 4.75
3261 4576 2.479566 TGCATCCTCTTGGAGAACAC 57.520 50.000 0.00 0.00 46.91 3.32
3286 4601 7.145985 CCATGAAGGAGCATTATTGATTTCAG 58.854 38.462 0.00 0.00 41.22 3.02
3287 4602 6.140303 TGAAGGAGCATTATTGATTTCAGC 57.860 37.500 0.00 0.00 0.00 4.26
3318 4633 0.937304 GCAAGAGACAACAAGCGACA 59.063 50.000 0.00 0.00 0.00 4.35
3341 4656 1.012486 GGTAGCCGGTTTGACGACAG 61.012 60.000 1.90 0.00 35.47 3.51
3345 4660 1.666872 CCGGTTTGACGACAGGACC 60.667 63.158 10.79 10.79 37.08 4.46
3350 4665 2.140717 GTTTGACGACAGGACCGAAAT 58.859 47.619 0.00 0.00 0.00 2.17
3351 4666 1.790755 TTGACGACAGGACCGAAATG 58.209 50.000 0.00 0.00 0.00 2.32
3352 4667 0.669318 TGACGACAGGACCGAAATGC 60.669 55.000 0.00 0.00 0.00 3.56
3354 4669 1.375396 CGACAGGACCGAAATGCCA 60.375 57.895 0.00 0.00 0.00 4.92
3357 4673 1.234615 ACAGGACCGAAATGCCAACG 61.235 55.000 0.00 0.00 0.00 4.10
3362 4678 1.392510 GACCGAAATGCCAACGTAGTC 59.607 52.381 0.00 0.00 45.00 2.59
3367 4683 1.006832 AATGCCAACGTAGTCGATGC 58.993 50.000 0.00 0.00 45.00 3.91
3395 4711 1.272212 CTGCGTAAAACCCTTGGCAAT 59.728 47.619 0.00 0.00 0.00 3.56
3483 4800 3.276857 CCAATGAGATTCTGACCAGGTG 58.723 50.000 0.00 0.00 0.00 4.00
3484 4801 3.276857 CAATGAGATTCTGACCAGGTGG 58.723 50.000 0.00 0.00 42.17 4.61
3485 4802 1.279496 TGAGATTCTGACCAGGTGGG 58.721 55.000 0.00 0.00 44.81 4.61
3486 4803 0.107459 GAGATTCTGACCAGGTGGGC 60.107 60.000 0.00 0.00 45.93 5.36
3503 4826 2.579201 CGAGGAACCAGCGACCAT 59.421 61.111 0.00 0.00 0.00 3.55
3545 4868 2.028112 TGCAAACTCGTCTTCCATAGCT 60.028 45.455 0.00 0.00 0.00 3.32
3568 4891 2.981302 CCACTGCGGATCACCTCA 59.019 61.111 0.00 0.00 36.56 3.86
3603 4926 3.764466 CAGGCTCGGCGAGAAGGT 61.764 66.667 38.56 16.96 0.00 3.50
3605 4928 4.070552 GGCTCGGCGAGAAGGTGT 62.071 66.667 38.56 0.00 0.00 4.16
3653 4983 0.902531 ATCCGTCGGAACCACTTGAT 59.097 50.000 19.76 0.00 34.34 2.57
3890 5220 2.736995 GTCTAACACGCGCCAGCA 60.737 61.111 5.73 0.00 45.49 4.41
3903 5233 2.043752 CAGCATGGATGGGTGCCA 60.044 61.111 0.00 0.00 42.20 4.92
4082 5418 2.109425 AAATGGGCTCGGTGAGTAAC 57.891 50.000 0.00 0.00 31.39 2.50
4197 5653 8.635765 TCCAAACACTATAATTCAAGCTTCTT 57.364 30.769 0.00 0.00 0.00 2.52
4198 5654 8.514594 TCCAAACACTATAATTCAAGCTTCTTG 58.485 33.333 0.00 0.37 0.00 3.02
4199 5655 7.756722 CCAAACACTATAATTCAAGCTTCTTGG 59.243 37.037 0.00 0.00 0.00 3.61
4200 5656 8.514594 CAAACACTATAATTCAAGCTTCTTGGA 58.485 33.333 0.00 0.00 0.00 3.53
4201 5657 8.635765 AACACTATAATTCAAGCTTCTTGGAA 57.364 30.769 0.00 0.00 0.00 3.53
4202 5658 8.814038 ACACTATAATTCAAGCTTCTTGGAAT 57.186 30.769 0.00 0.00 0.00 3.01
4203 5659 9.247861 ACACTATAATTCAAGCTTCTTGGAATT 57.752 29.630 20.09 20.09 41.41 2.17
4204 5660 9.512435 CACTATAATTCAAGCTTCTTGGAATTG 57.488 33.333 22.98 13.97 39.53 2.32
4205 5661 9.247861 ACTATAATTCAAGCTTCTTGGAATTGT 57.752 29.630 22.98 20.13 39.53 2.71
4208 5664 6.899393 ATTCAAGCTTCTTGGAATTGTACA 57.101 33.333 0.00 0.00 0.00 2.90
4209 5665 6.899393 TTCAAGCTTCTTGGAATTGTACAT 57.101 33.333 0.00 0.00 0.00 2.29
4210 5666 6.899393 TCAAGCTTCTTGGAATTGTACATT 57.101 33.333 0.00 0.00 0.00 2.71
4211 5667 7.288810 TCAAGCTTCTTGGAATTGTACATTT 57.711 32.000 0.00 0.00 0.00 2.32
4212 5668 7.725251 TCAAGCTTCTTGGAATTGTACATTTT 58.275 30.769 0.00 0.00 0.00 1.82
4213 5669 8.203485 TCAAGCTTCTTGGAATTGTACATTTTT 58.797 29.630 0.00 0.00 0.00 1.94
4248 5704 8.421002 GGAATTGTACATATTTTGCATACCCTT 58.579 33.333 0.00 0.00 0.00 3.95
4545 6175 9.898152 TGATGATGTACAAGAATGGTAATACAA 57.102 29.630 0.00 0.00 0.00 2.41
4585 6215 3.912496 ACTGTATGTGCATCCAGCTAA 57.088 42.857 4.93 0.00 45.94 3.09
4588 6218 6.119240 ACTGTATGTGCATCCAGCTAATAT 57.881 37.500 4.93 0.00 45.94 1.28
4622 6252 0.037326 TGCTCGGTCATTGTGGAGAC 60.037 55.000 5.85 0.00 0.00 3.36
4714 6344 3.747099 AGATTTCGGAACATTGAAGCG 57.253 42.857 0.00 0.00 0.00 4.68
4883 6524 4.253685 AGTACCTTGTGATCGGTTCATTG 58.746 43.478 0.00 0.00 36.54 2.82
4950 6591 9.372369 GTCTAATACACTATGCTTCTTTGAACT 57.628 33.333 0.00 0.00 0.00 3.01
5008 6649 3.523606 TTGATTATGTGTTGCATGCCC 57.476 42.857 16.68 6.36 38.47 5.36
5030 6671 7.236640 TGCCCATACTGTTATACATAAGGATCA 59.763 37.037 0.00 0.00 0.00 2.92
5046 6687 5.476091 AGGATCAAGTTCCTCGGATATTC 57.524 43.478 0.00 0.00 42.71 1.75
5060 6701 9.363401 TCCTCGGATATTCTATTCTTGAAGTTA 57.637 33.333 0.00 0.00 0.00 2.24
5141 6824 9.911788 ATCACTTTCATGTTAGGATATGACTTT 57.088 29.630 0.00 0.00 33.75 2.66
5324 7007 5.408299 GGGTTTCAATATTTGGCACAGTTTC 59.592 40.000 0.00 0.00 42.39 2.78
5327 7010 5.389859 TCAATATTTGGCACAGTTTCCAG 57.610 39.130 0.00 0.00 42.39 3.86
5328 7011 4.832266 TCAATATTTGGCACAGTTTCCAGT 59.168 37.500 0.00 0.00 42.39 4.00
5329 7012 5.304101 TCAATATTTGGCACAGTTTCCAGTT 59.696 36.000 0.00 0.00 42.39 3.16
5330 7013 6.491745 TCAATATTTGGCACAGTTTCCAGTTA 59.508 34.615 0.00 0.00 42.39 2.24
5332 7015 1.588674 TGGCACAGTTTCCAGTTACG 58.411 50.000 0.00 0.00 0.00 3.18
5333 7016 1.134340 TGGCACAGTTTCCAGTTACGT 60.134 47.619 0.00 0.00 0.00 3.57
5355 7044 6.072893 ACGTTTAAGTACCAAAGTTGCCTATG 60.073 38.462 0.00 0.00 0.00 2.23
5527 7218 9.413734 AGCTATGAAACTATTCCAAATTTAGCT 57.586 29.630 0.00 0.00 34.49 3.32
5558 7249 9.802039 AGAGTTAATGTTCCAAATTTAGTACCA 57.198 29.630 0.00 0.00 0.00 3.25
5562 7253 9.646427 TTAATGTTCCAAATTTAGTACCATTGC 57.354 29.630 0.00 0.00 0.00 3.56
5563 7254 6.656632 TGTTCCAAATTTAGTACCATTGCA 57.343 33.333 0.00 0.00 0.00 4.08
5564 7255 7.238486 TGTTCCAAATTTAGTACCATTGCAT 57.762 32.000 0.00 0.00 0.00 3.96
5565 7256 7.675062 TGTTCCAAATTTAGTACCATTGCATT 58.325 30.769 0.00 0.00 0.00 3.56
5566 7257 7.601886 TGTTCCAAATTTAGTACCATTGCATTG 59.398 33.333 1.49 1.49 0.00 2.82
5567 7258 7.238486 TCCAAATTTAGTACCATTGCATTGT 57.762 32.000 7.75 0.00 0.00 2.71
5568 7259 7.675062 TCCAAATTTAGTACCATTGCATTGTT 58.325 30.769 7.75 0.00 0.00 2.83
5569 7260 8.153550 TCCAAATTTAGTACCATTGCATTGTTT 58.846 29.630 7.75 0.00 0.00 2.83
5570 7261 9.429359 CCAAATTTAGTACCATTGCATTGTTTA 57.571 29.630 7.75 0.00 0.00 2.01
5573 7264 8.996024 ATTTAGTACCATTGCATTGTTTAACC 57.004 30.769 7.75 0.00 0.00 2.85
5574 7265 7.768807 TTAGTACCATTGCATTGTTTAACCT 57.231 32.000 7.75 0.00 0.00 3.50
5575 7266 8.865420 TTAGTACCATTGCATTGTTTAACCTA 57.135 30.769 7.75 0.00 0.00 3.08
5576 7267 7.954666 AGTACCATTGCATTGTTTAACCTAT 57.045 32.000 7.75 0.00 0.00 2.57
5578 7269 9.640952 AGTACCATTGCATTGTTTAACCTATAT 57.359 29.630 7.75 0.00 0.00 0.86
5582 7273 9.410556 CCATTGCATTGTTTAACCTATATAAGC 57.589 33.333 7.75 0.00 0.00 3.09
5583 7274 9.410556 CATTGCATTGTTTAACCTATATAAGCC 57.589 33.333 0.30 0.00 0.00 4.35
5584 7275 8.526667 TTGCATTGTTTAACCTATATAAGCCA 57.473 30.769 0.00 0.00 0.00 4.75
5585 7276 8.165239 TGCATTGTTTAACCTATATAAGCCAG 57.835 34.615 0.00 0.00 0.00 4.85
5586 7277 7.996066 TGCATTGTTTAACCTATATAAGCCAGA 59.004 33.333 0.00 0.00 0.00 3.86
5587 7278 8.507249 GCATTGTTTAACCTATATAAGCCAGAG 58.493 37.037 0.00 0.00 0.00 3.35
5588 7279 9.561069 CATTGTTTAACCTATATAAGCCAGAGT 57.439 33.333 0.00 0.00 0.00 3.24
5589 7280 8.958119 TTGTTTAACCTATATAAGCCAGAGTG 57.042 34.615 0.00 0.00 0.00 3.51
5590 7281 7.506114 TGTTTAACCTATATAAGCCAGAGTGG 58.494 38.462 0.00 0.00 41.55 4.00
5591 7282 7.346175 TGTTTAACCTATATAAGCCAGAGTGGA 59.654 37.037 0.00 0.00 40.96 4.02
5592 7283 7.540474 TTAACCTATATAAGCCAGAGTGGAG 57.460 40.000 0.00 0.00 40.96 3.86
5593 7284 5.340891 ACCTATATAAGCCAGAGTGGAGA 57.659 43.478 0.00 0.00 40.96 3.71
5594 7285 5.716979 ACCTATATAAGCCAGAGTGGAGAA 58.283 41.667 0.00 0.00 40.96 2.87
5595 7286 6.143915 ACCTATATAAGCCAGAGTGGAGAAA 58.856 40.000 0.00 0.00 40.96 2.52
5596 7287 6.042208 ACCTATATAAGCCAGAGTGGAGAAAC 59.958 42.308 0.00 0.00 40.96 2.78
5597 7288 6.268847 CCTATATAAGCCAGAGTGGAGAAACT 59.731 42.308 0.00 0.00 40.96 2.66
5598 7289 2.557920 AAGCCAGAGTGGAGAAACTG 57.442 50.000 0.00 0.00 40.96 3.16
5599 7290 1.722034 AGCCAGAGTGGAGAAACTGA 58.278 50.000 0.00 0.00 40.96 3.41
5600 7291 2.050144 AGCCAGAGTGGAGAAACTGAA 58.950 47.619 0.00 0.00 40.96 3.02
5601 7292 2.439507 AGCCAGAGTGGAGAAACTGAAA 59.560 45.455 0.00 0.00 40.96 2.69
5602 7293 2.550180 GCCAGAGTGGAGAAACTGAAAC 59.450 50.000 0.00 0.00 40.96 2.78
5603 7294 3.745797 GCCAGAGTGGAGAAACTGAAACT 60.746 47.826 0.00 0.00 40.96 2.66
5604 7295 3.812053 CCAGAGTGGAGAAACTGAAACTG 59.188 47.826 0.00 0.00 40.96 3.16
5605 7296 3.812053 CAGAGTGGAGAAACTGAAACTGG 59.188 47.826 0.00 0.00 32.90 4.00
5606 7297 3.142174 GAGTGGAGAAACTGAAACTGGG 58.858 50.000 0.00 0.00 0.00 4.45
5607 7298 2.509964 AGTGGAGAAACTGAAACTGGGT 59.490 45.455 0.00 0.00 0.00 4.51
5608 7299 2.618709 GTGGAGAAACTGAAACTGGGTG 59.381 50.000 0.00 0.00 0.00 4.61
5609 7300 2.507886 TGGAGAAACTGAAACTGGGTGA 59.492 45.455 0.00 0.00 0.00 4.02
5610 7301 3.138283 TGGAGAAACTGAAACTGGGTGAT 59.862 43.478 0.00 0.00 0.00 3.06
5611 7302 4.349636 TGGAGAAACTGAAACTGGGTGATA 59.650 41.667 0.00 0.00 0.00 2.15
5612 7303 5.014123 TGGAGAAACTGAAACTGGGTGATAT 59.986 40.000 0.00 0.00 0.00 1.63
5613 7304 5.586643 GGAGAAACTGAAACTGGGTGATATC 59.413 44.000 0.00 0.00 0.00 1.63
5614 7305 5.501156 AGAAACTGAAACTGGGTGATATCC 58.499 41.667 0.00 0.00 0.00 2.59
5615 7306 4.927267 AACTGAAACTGGGTGATATCCA 57.073 40.909 0.00 0.00 0.00 3.41
5616 7307 5.456921 AACTGAAACTGGGTGATATCCAT 57.543 39.130 0.00 0.00 33.29 3.41
5617 7308 5.456921 ACTGAAACTGGGTGATATCCATT 57.543 39.130 0.00 0.00 33.29 3.16
5618 7309 5.440610 ACTGAAACTGGGTGATATCCATTC 58.559 41.667 0.00 0.00 33.29 2.67
5619 7310 4.792068 TGAAACTGGGTGATATCCATTCC 58.208 43.478 0.00 0.00 33.29 3.01
5620 7311 4.229353 TGAAACTGGGTGATATCCATTCCA 59.771 41.667 0.00 2.27 33.29 3.53
5621 7312 4.879295 AACTGGGTGATATCCATTCCAA 57.121 40.909 0.00 0.00 33.01 3.53
5622 7313 4.879295 ACTGGGTGATATCCATTCCAAA 57.121 40.909 0.00 0.00 33.01 3.28
5623 7314 5.408079 ACTGGGTGATATCCATTCCAAAT 57.592 39.130 0.00 0.00 33.01 2.32
5624 7315 5.780731 ACTGGGTGATATCCATTCCAAATT 58.219 37.500 0.00 0.00 33.01 1.82
5625 7316 6.204555 ACTGGGTGATATCCATTCCAAATTT 58.795 36.000 0.00 0.00 33.01 1.82
5626 7317 7.361438 ACTGGGTGATATCCATTCCAAATTTA 58.639 34.615 0.00 0.00 33.01 1.40
5627 7318 7.506938 ACTGGGTGATATCCATTCCAAATTTAG 59.493 37.037 0.00 0.00 33.01 1.85
5628 7319 6.267471 TGGGTGATATCCATTCCAAATTTAGC 59.733 38.462 0.00 0.00 31.28 3.09
5629 7320 6.494835 GGGTGATATCCATTCCAAATTTAGCT 59.505 38.462 0.00 0.00 0.00 3.32
5680 7371 7.148154 ACGATTGCATTGTTTAACCTATAAGCA 60.148 33.333 0.00 0.00 0.00 3.91
5721 7412 5.541845 AGTGGATGATATCACGTGTATTGG 58.458 41.667 16.51 0.00 38.77 3.16
5765 7456 2.158900 TGGCCGAGAGAATCATCTTTCC 60.159 50.000 0.00 0.00 37.82 3.13
5776 7467 9.933240 AGAGAATCATCTTTCCCTTCATTTTAT 57.067 29.630 0.00 0.00 37.82 1.40
5798 7489 9.469807 TTTATGCCTTTGTGTTGTAACTAATTG 57.530 29.630 0.00 0.00 0.00 2.32
6237 7955 4.686191 TGGGTTAAGTCAGACCGTTTTA 57.314 40.909 0.00 0.00 36.78 1.52
6541 8288 9.933723 CTTTGAAATCTGATTGTTATTCCCTTT 57.066 29.630 3.22 0.00 0.00 3.11
6545 8292 3.128589 TCTGATTGTTATTCCCTTTGCGC 59.871 43.478 0.00 0.00 0.00 6.09
6557 8304 0.595095 CTTTGCGCTGCTTCTTCCTT 59.405 50.000 9.73 0.00 0.00 3.36
6558 8305 0.593128 TTTGCGCTGCTTCTTCCTTC 59.407 50.000 9.73 0.00 0.00 3.46
6593 8358 5.892160 TGCTGATTGAATTCTTGAGGAAG 57.108 39.130 7.05 0.00 37.36 3.46
6687 8454 2.495084 GGTCGAAATTCCAGGGATAGC 58.505 52.381 0.00 0.00 0.00 2.97
6688 8455 2.104963 GGTCGAAATTCCAGGGATAGCT 59.895 50.000 0.00 0.00 0.00 3.32
6689 8456 3.134458 GTCGAAATTCCAGGGATAGCTG 58.866 50.000 0.00 0.00 0.00 4.24
6690 8457 2.104792 TCGAAATTCCAGGGATAGCTGG 59.895 50.000 0.00 0.00 41.85 4.85
6691 8458 2.811873 CGAAATTCCAGGGATAGCTGGG 60.812 54.545 0.00 0.00 40.91 4.45
6692 8459 0.480252 AATTCCAGGGATAGCTGGGC 59.520 55.000 0.00 0.00 40.91 5.36
6693 8460 0.698886 ATTCCAGGGATAGCTGGGCA 60.699 55.000 0.00 0.00 40.91 5.36
6694 8461 1.348008 TTCCAGGGATAGCTGGGCAG 61.348 60.000 0.00 0.00 40.91 4.85
6704 8471 2.433446 CTGGGCAGCTGAGGTTGT 59.567 61.111 20.43 0.00 0.00 3.32
6705 8472 1.228367 CTGGGCAGCTGAGGTTGTT 60.228 57.895 20.43 0.00 0.00 2.83
6706 8473 1.521450 CTGGGCAGCTGAGGTTGTTG 61.521 60.000 20.43 0.00 0.00 3.33
6707 8474 2.647297 GGCAGCTGAGGTTGTTGC 59.353 61.111 20.43 0.00 40.18 4.17
6708 8475 2.647297 GCAGCTGAGGTTGTTGCC 59.353 61.111 20.43 0.00 35.99 4.52
6709 8476 2.195567 GCAGCTGAGGTTGTTGCCA 61.196 57.895 20.43 0.00 35.99 4.92
6710 8477 1.954528 CAGCTGAGGTTGTTGCCAG 59.045 57.895 8.42 0.00 0.00 4.85
6711 8478 2.647297 GCTGAGGTTGTTGCCAGC 59.353 61.111 0.00 0.00 44.00 4.85
6712 8479 2.924105 GCTGAGGTTGTTGCCAGCC 61.924 63.158 0.00 0.00 44.39 4.85
6713 8480 2.203480 TGAGGTTGTTGCCAGCCC 60.203 61.111 0.00 0.00 42.60 5.19
6714 8481 2.203480 GAGGTTGTTGCCAGCCCA 60.203 61.111 0.00 0.00 42.60 5.36
6715 8482 2.521708 AGGTTGTTGCCAGCCCAC 60.522 61.111 0.00 0.00 42.60 4.61
6716 8483 3.615709 GGTTGTTGCCAGCCCACC 61.616 66.667 0.00 0.00 36.03 4.61
6717 8484 2.521708 GTTGTTGCCAGCCCACCT 60.522 61.111 0.00 0.00 0.00 4.00
6718 8485 2.521465 TTGTTGCCAGCCCACCTG 60.521 61.111 0.00 0.00 41.41 4.00
6719 8486 3.067084 TTGTTGCCAGCCCACCTGA 62.067 57.895 0.00 0.00 44.64 3.86
6720 8487 2.674380 GTTGCCAGCCCACCTGAG 60.674 66.667 0.00 0.00 44.64 3.35
6721 8488 4.666253 TTGCCAGCCCACCTGAGC 62.666 66.667 0.00 0.00 44.64 4.26
6723 8490 4.792804 GCCAGCCCACCTGAGCTC 62.793 72.222 6.82 6.82 44.64 4.09
6724 8491 4.463879 CCAGCCCACCTGAGCTCG 62.464 72.222 9.64 3.88 44.64 5.03
6725 8492 3.385384 CAGCCCACCTGAGCTCGA 61.385 66.667 9.64 0.00 44.64 4.04
6726 8493 3.073735 AGCCCACCTGAGCTCGAG 61.074 66.667 8.45 8.45 32.71 4.04
6727 8494 3.386237 GCCCACCTGAGCTCGAGT 61.386 66.667 15.13 5.89 0.00 4.18
6728 8495 2.888863 CCCACCTGAGCTCGAGTC 59.111 66.667 15.13 10.78 0.00 3.36
6729 8496 2.716017 CCCACCTGAGCTCGAGTCC 61.716 68.421 15.13 6.77 0.00 3.85
6730 8497 1.680651 CCACCTGAGCTCGAGTCCT 60.681 63.158 15.13 2.91 0.00 3.85
6731 8498 1.510383 CACCTGAGCTCGAGTCCTG 59.490 63.158 15.13 9.71 0.00 3.86
6732 8499 0.962855 CACCTGAGCTCGAGTCCTGA 60.963 60.000 15.13 0.00 0.00 3.86
6733 8500 0.963355 ACCTGAGCTCGAGTCCTGAC 60.963 60.000 15.13 0.00 0.00 3.51
6734 8501 0.962855 CCTGAGCTCGAGTCCTGACA 60.963 60.000 15.13 4.99 0.00 3.58
6735 8502 0.170116 CTGAGCTCGAGTCCTGACAC 59.830 60.000 15.13 0.00 0.00 3.67
6736 8503 1.135731 GAGCTCGAGTCCTGACACG 59.864 63.158 15.13 10.28 44.64 4.49
6737 8504 2.179517 GCTCGAGTCCTGACACGG 59.820 66.667 15.13 8.59 43.72 4.94
6738 8505 2.333417 GCTCGAGTCCTGACACGGA 61.333 63.158 15.13 4.01 43.72 4.69
6760 8527 3.479269 CGGTGCTCGCGGAGTTTC 61.479 66.667 6.13 0.00 31.39 2.78
6761 8528 2.048127 GGTGCTCGCGGAGTTTCT 60.048 61.111 6.13 0.00 31.39 2.52
6762 8529 2.095252 GGTGCTCGCGGAGTTTCTC 61.095 63.158 6.13 0.00 31.39 2.87
6763 8530 2.095252 GTGCTCGCGGAGTTTCTCC 61.095 63.158 6.13 5.79 46.44 3.71
6777 8544 6.285224 GGAGTTTCTCCTATAAAGAAGAGCC 58.715 44.000 8.38 0.00 46.41 4.70
6778 8545 6.127026 GGAGTTTCTCCTATAAAGAAGAGCCA 60.127 42.308 8.38 0.00 46.41 4.75
6779 8546 7.259088 AGTTTCTCCTATAAAGAAGAGCCAA 57.741 36.000 0.00 0.00 34.42 4.52
6780 8547 7.106890 AGTTTCTCCTATAAAGAAGAGCCAAC 58.893 38.462 0.00 0.00 34.42 3.77
6781 8548 5.263968 TCTCCTATAAAGAAGAGCCAACG 57.736 43.478 0.00 0.00 0.00 4.10
6782 8549 4.954202 TCTCCTATAAAGAAGAGCCAACGA 59.046 41.667 0.00 0.00 0.00 3.85
6783 8550 5.067936 TCTCCTATAAAGAAGAGCCAACGAG 59.932 44.000 0.00 0.00 0.00 4.18
6784 8551 4.099573 TCCTATAAAGAAGAGCCAACGAGG 59.900 45.833 0.00 0.00 41.84 4.63
6785 8552 2.762535 TAAAGAAGAGCCAACGAGGG 57.237 50.000 0.00 0.00 38.09 4.30
6792 8559 4.611961 GCCAACGAGGGTTAGTCC 57.388 61.111 0.00 0.00 38.09 3.85
6793 8560 1.980844 GCCAACGAGGGTTAGTCCT 59.019 57.895 0.00 0.00 40.43 3.85
6794 8561 0.323957 GCCAACGAGGGTTAGTCCTT 59.676 55.000 0.00 0.00 37.25 3.36
6795 8562 1.944430 GCCAACGAGGGTTAGTCCTTG 60.944 57.143 0.00 0.00 42.68 3.61
6796 8563 1.338769 CCAACGAGGGTTAGTCCTTGG 60.339 57.143 0.00 0.00 41.58 3.61
6797 8564 0.981943 AACGAGGGTTAGTCCTTGGG 59.018 55.000 0.00 0.00 41.58 4.12
6798 8565 0.178912 ACGAGGGTTAGTCCTTGGGT 60.179 55.000 0.00 0.00 41.58 4.51
6799 8566 0.981943 CGAGGGTTAGTCCTTGGGTT 59.018 55.000 0.00 0.00 37.25 4.11
6800 8567 1.338769 CGAGGGTTAGTCCTTGGGTTG 60.339 57.143 0.00 0.00 37.25 3.77
6801 8568 1.004394 GAGGGTTAGTCCTTGGGTTGG 59.996 57.143 0.00 0.00 37.25 3.77
6802 8569 0.775542 GGGTTAGTCCTTGGGTTGGT 59.224 55.000 0.00 0.00 36.25 3.67
6803 8570 1.271762 GGGTTAGTCCTTGGGTTGGTC 60.272 57.143 0.00 0.00 36.25 4.02
6804 8571 1.703513 GGTTAGTCCTTGGGTTGGTCT 59.296 52.381 0.00 0.00 0.00 3.85
6805 8572 2.290134 GGTTAGTCCTTGGGTTGGTCTC 60.290 54.545 0.00 0.00 0.00 3.36
6806 8573 2.370849 GTTAGTCCTTGGGTTGGTCTCA 59.629 50.000 0.00 0.00 0.00 3.27
6807 8574 1.747444 AGTCCTTGGGTTGGTCTCAT 58.253 50.000 0.00 0.00 0.00 2.90
6808 8575 2.065799 AGTCCTTGGGTTGGTCTCATT 58.934 47.619 0.00 0.00 0.00 2.57
6809 8576 2.447047 AGTCCTTGGGTTGGTCTCATTT 59.553 45.455 0.00 0.00 0.00 2.32
6810 8577 3.117131 AGTCCTTGGGTTGGTCTCATTTT 60.117 43.478 0.00 0.00 0.00 1.82
6811 8578 3.641436 GTCCTTGGGTTGGTCTCATTTTT 59.359 43.478 0.00 0.00 0.00 1.94
6825 8592 2.511900 TTTTTGAGGACGGGGCGT 59.488 55.556 0.00 0.00 45.10 5.68
6860 8627 3.998156 AGCTGATGTTGCTGCCAG 58.002 55.556 0.00 0.00 39.56 4.85
6861 8628 2.181021 GCTGATGTTGCTGCCAGC 59.819 61.111 10.45 10.45 44.00 4.85
6862 8629 2.882876 CTGATGTTGCTGCCAGCC 59.117 61.111 15.29 0.00 41.51 4.85
6863 8630 2.677524 TGATGTTGCTGCCAGCCC 60.678 61.111 15.29 5.33 41.51 5.19
6864 8631 2.677524 GATGTTGCTGCCAGCCCA 60.678 61.111 15.29 11.39 41.51 5.36
6865 8632 2.038329 ATGTTGCTGCCAGCCCAT 59.962 55.556 15.29 13.25 41.51 4.00
6866 8633 2.012902 GATGTTGCTGCCAGCCCATC 62.013 60.000 22.62 22.62 41.51 3.51
6867 8634 3.455469 GTTGCTGCCAGCCCATCC 61.455 66.667 15.29 0.00 41.51 3.51
6871 8638 3.790437 CTGCCAGCCCATCCGAGT 61.790 66.667 0.00 0.00 0.00 4.18
6872 8639 3.329889 TGCCAGCCCATCCGAGTT 61.330 61.111 0.00 0.00 0.00 3.01
6873 8640 2.514824 GCCAGCCCATCCGAGTTC 60.515 66.667 0.00 0.00 0.00 3.01
6874 8641 2.202932 CCAGCCCATCCGAGTTCG 60.203 66.667 0.00 0.00 39.44 3.95
6875 8642 2.721167 CCAGCCCATCCGAGTTCGA 61.721 63.158 2.59 0.00 43.02 3.71
6876 8643 1.218047 CAGCCCATCCGAGTTCGAA 59.782 57.895 2.59 0.00 43.02 3.71
6877 8644 0.179073 CAGCCCATCCGAGTTCGAAT 60.179 55.000 0.00 0.00 43.02 3.34
6878 8645 0.105039 AGCCCATCCGAGTTCGAATC 59.895 55.000 0.00 0.00 43.02 2.52
6879 8646 0.880718 GCCCATCCGAGTTCGAATCC 60.881 60.000 0.00 0.00 43.02 3.01
6880 8647 0.249911 CCCATCCGAGTTCGAATCCC 60.250 60.000 0.00 0.00 43.02 3.85
6881 8648 0.597637 CCATCCGAGTTCGAATCCCG 60.598 60.000 0.00 5.50 43.02 5.14
6882 8649 0.597637 CATCCGAGTTCGAATCCCGG 60.598 60.000 21.81 21.81 43.02 5.73
6883 8650 2.365095 ATCCGAGTTCGAATCCCGGC 62.365 60.000 22.55 2.68 43.02 6.13
6884 8651 2.494918 CGAGTTCGAATCCCGGCT 59.505 61.111 0.00 0.00 43.02 5.52
6885 8652 1.589196 CGAGTTCGAATCCCGGCTC 60.589 63.158 0.00 0.87 43.02 4.70
6886 8653 1.589196 GAGTTCGAATCCCGGCTCG 60.589 63.158 0.00 11.37 39.14 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.595536 GCTACAGCATTTGATTTGTGCG 59.404 45.455 0.00 0.00 43.37 5.34
98 99 7.920151 GTGGCAATTTAATCTGCATATACACAA 59.080 33.333 10.47 0.00 40.46 3.33
127 128 3.454082 CAGAGCCTGTTAATTCTCCTCCT 59.546 47.826 0.00 0.00 0.00 3.69
137 138 4.890088 ACGTGTATTTCAGAGCCTGTTAA 58.110 39.130 0.00 0.53 32.61 2.01
166 175 2.237893 GGATCGTTTTCCCCCTTCTGTA 59.762 50.000 0.00 0.00 0.00 2.74
547 558 1.272147 CCCAAACCCCTCTTCCTCTTG 60.272 57.143 0.00 0.00 0.00 3.02
648 664 0.179073 GACACATGGGTCCAGGATCG 60.179 60.000 17.79 0.00 0.00 3.69
653 669 0.321919 CCACTGACACATGGGTCCAG 60.322 60.000 25.06 21.86 36.97 3.86
662 678 0.184692 TCATTTGGCCCACTGACACA 59.815 50.000 0.00 0.00 0.00 3.72
663 679 1.000274 GTTCATTTGGCCCACTGACAC 60.000 52.381 0.00 0.00 0.00 3.67
679 696 3.281727 AAACTGGAGAAGCTGTGTTCA 57.718 42.857 0.00 0.00 0.00 3.18
831 852 1.596895 GGGTTTCGAGTCGGAGCTCT 61.597 60.000 14.64 0.00 33.55 4.09
902 923 2.417379 CGATATGAAGGGCATACCGGAG 60.417 54.545 9.46 0.00 41.78 4.63
936 959 3.591835 GAGGAGAGGCGAGGCGAG 61.592 72.222 0.00 0.00 0.00 5.03
960 983 1.269448 GGCAAAATCAGCGGTCAGAAA 59.731 47.619 0.00 0.00 0.00 2.52
961 984 0.881118 GGCAAAATCAGCGGTCAGAA 59.119 50.000 0.00 0.00 0.00 3.02
978 1001 2.008268 TTCCTACGAATCCCGACGGC 62.008 60.000 8.86 0.00 41.76 5.68
1164 1187 7.102346 AGACAATTAGGTTCAGATCAGAGTTG 58.898 38.462 0.00 0.00 0.00 3.16
1183 1206 5.511545 GGGCATAAGATACCGAGAAGACAAT 60.512 44.000 0.00 0.00 0.00 2.71
1224 1250 2.863137 CGAAGCAGAAGGTGATAAGAGC 59.137 50.000 0.00 0.00 0.00 4.09
1279 1305 3.320673 AGATTTCTCAACCGACCAGAC 57.679 47.619 0.00 0.00 0.00 3.51
1284 1310 6.404712 AATCGTTTAGATTTCTCAACCGAC 57.595 37.500 0.36 0.00 46.80 4.79
1366 1395 4.141344 TGGGGCAAATACTAGTTCCCATAC 60.141 45.833 0.00 0.00 37.97 2.39
1436 1472 7.094677 GGTTCACATACGGTTTAATGGTTTACT 60.095 37.037 0.00 0.00 0.00 2.24
1501 1537 3.054287 TGTCCACTCACCAAACTTTACCA 60.054 43.478 0.00 0.00 0.00 3.25
1616 1652 5.861251 TGCATGAACAACGATTGAAAATACC 59.139 36.000 0.00 0.00 0.00 2.73
1725 1764 8.924303 AGGCTGTATCAGTATTCTTGTATGTTA 58.076 33.333 0.00 0.00 33.43 2.41
1816 1855 6.756542 CCTTGTTTTTCCTAACTCCAAGTTTG 59.243 38.462 0.00 0.00 39.51 2.93
1950 1993 3.947196 TGATCATGACTGTTTGTATGCCC 59.053 43.478 0.00 0.00 0.00 5.36
2065 2113 2.951642 TGCAGGGCATATTAACTCTTGC 59.048 45.455 0.00 0.00 31.71 4.01
2083 2131 4.650734 TGTTCATAGTGGTTGAGATTGCA 58.349 39.130 0.00 0.00 0.00 4.08
2093 2142 4.974645 TCTCAACCTTGTTCATAGTGGT 57.025 40.909 0.00 0.00 0.00 4.16
2215 2265 2.676748 TGTTTGGGAGAAGGTTTGCAT 58.323 42.857 0.00 0.00 0.00 3.96
2242 2292 5.858581 GCACTAAACACATTGAAGTGGATTC 59.141 40.000 0.00 0.00 43.72 2.52
2288 2338 6.869206 AATCTGGGTGCTAGTTCTTAACTA 57.131 37.500 0.03 0.03 42.81 2.24
2314 2364 0.537188 ACCTCCAGTTCTATGGTGCG 59.463 55.000 0.00 0.00 41.43 5.34
2345 2395 3.440228 GCTTCTACGAGAACCTCATGTC 58.560 50.000 0.00 0.00 29.89 3.06
2358 2408 0.242825 TGGGTTCAGTCGCTTCTACG 59.757 55.000 0.00 0.00 0.00 3.51
2359 2409 2.029290 TCTTGGGTTCAGTCGCTTCTAC 60.029 50.000 0.00 0.00 0.00 2.59
2461 2511 5.932619 TTCGGTCCTAATTCATCTCTTGA 57.067 39.130 0.00 0.00 0.00 3.02
2515 2566 1.589716 GGGCAGGTTGCACTGATGAC 61.590 60.000 8.43 0.00 45.01 3.06
2539 2590 3.100658 TGCTTAGCGTGTTTACAGACA 57.899 42.857 0.00 0.00 0.00 3.41
2551 2602 2.483877 TCCAAGAACACATTGCTTAGCG 59.516 45.455 0.00 0.00 0.00 4.26
2616 2667 3.055385 CCAAGAGGGTTCTCCGTTTCATA 60.055 47.826 0.00 0.00 40.83 2.15
2622 2673 1.536662 AGCCAAGAGGGTTCTCCGT 60.537 57.895 0.00 0.00 45.14 4.69
2630 2681 2.044551 GGGAAGCAGCCAAGAGGG 60.045 66.667 0.00 0.00 40.85 4.30
2638 2689 1.260544 AATGTTCCTTGGGAAGCAGC 58.739 50.000 0.00 0.00 42.88 5.25
2746 4061 2.102588 ACATTCATACCTACCGGAGCAC 59.897 50.000 9.46 0.00 0.00 4.40
2752 4067 1.340248 AGCCGACATTCATACCTACCG 59.660 52.381 0.00 0.00 0.00 4.02
2774 4089 1.821332 GGCATTCCTCCTCTTGGCG 60.821 63.158 0.00 0.00 0.00 5.69
2786 4101 1.106285 GTCCCATGACCTTGGCATTC 58.894 55.000 0.00 0.00 35.34 2.67
2787 4102 0.409092 TGTCCCATGACCTTGGCATT 59.591 50.000 0.00 0.00 41.01 3.56
2788 4103 0.409092 TTGTCCCATGACCTTGGCAT 59.591 50.000 0.00 0.00 41.01 4.40
2800 4115 3.118075 TGTGTTCATGAGAAGTTGTCCCA 60.118 43.478 0.00 0.00 33.63 4.37
2824 4139 0.109723 AAGCCAGTTTCTACGCCCAA 59.890 50.000 0.00 0.00 0.00 4.12
2867 4182 6.107901 AGAAGTACACTCTTGATCTGCTTT 57.892 37.500 0.00 0.00 0.00 3.51
2870 4185 6.597614 CAAAAGAAGTACACTCTTGATCTGC 58.402 40.000 10.11 0.00 0.00 4.26
2886 4201 2.499732 GTCGCCGCGCAAAAGAAG 60.500 61.111 8.75 0.00 0.00 2.85
2887 4202 2.123988 ATTGTCGCCGCGCAAAAGAA 62.124 50.000 20.79 5.66 0.00 2.52
2888 4203 2.612567 ATTGTCGCCGCGCAAAAGA 61.613 52.632 20.79 0.00 0.00 2.52
2899 4214 2.361104 TTCCAGGGCCATTGTCGC 60.361 61.111 6.18 0.00 0.00 5.19
2908 4223 2.360475 GGCTCACAGTTCCAGGGC 60.360 66.667 0.00 0.00 0.00 5.19
2917 4232 1.474077 GGGCATTAAAGTGGCTCACAG 59.526 52.381 7.86 0.00 43.55 3.66
2957 4272 4.344102 CACCTTCCCGGTTATAAGATCTCA 59.656 45.833 0.00 0.00 46.37 3.27
2966 4281 1.607612 CTGCCACCTTCCCGGTTAT 59.392 57.895 0.00 0.00 46.37 1.89
3066 4381 1.033746 CCATGGCAGTGTCACCATCC 61.034 60.000 0.00 0.00 44.97 3.51
3089 4404 4.520492 GGTGGACACATCTTTGTTCATCTT 59.480 41.667 4.69 0.00 37.33 2.40
3110 4425 2.371841 TGGCTTCAGTACATCTGTTGGT 59.628 45.455 0.00 0.00 43.97 3.67
3111 4426 3.057969 TGGCTTCAGTACATCTGTTGG 57.942 47.619 0.00 0.00 43.97 3.77
3125 4440 1.728971 CACGTCTGAGTGATTGGCTTC 59.271 52.381 0.00 0.00 44.43 3.86
3261 4576 7.046292 TGAAATCAATAATGCTCCTTCATGG 57.954 36.000 0.00 0.00 37.10 3.66
3286 4601 2.675348 GTCTCTTGCAGTTAGTCATGGC 59.325 50.000 0.00 0.00 0.00 4.40
3287 4602 3.930336 TGTCTCTTGCAGTTAGTCATGG 58.070 45.455 0.00 0.00 0.00 3.66
3318 4633 0.672401 CGTCAAACCGGCTACCATGT 60.672 55.000 0.00 0.00 0.00 3.21
3341 4656 0.725117 CTACGTTGGCATTTCGGTCC 59.275 55.000 0.00 0.00 0.00 4.46
3345 4660 1.342555 TCGACTACGTTGGCATTTCG 58.657 50.000 3.22 2.30 40.69 3.46
3350 4665 0.735978 CAGCATCGACTACGTTGGCA 60.736 55.000 3.22 0.00 38.94 4.92
3351 4666 0.736325 ACAGCATCGACTACGTTGGC 60.736 55.000 0.00 0.00 38.94 4.52
3352 4667 0.992072 CACAGCATCGACTACGTTGG 59.008 55.000 0.00 0.00 38.94 3.77
3354 4669 1.268625 TGACACAGCATCGACTACGTT 59.731 47.619 0.00 0.00 40.69 3.99
3357 4673 2.254459 CAGTGACACAGCATCGACTAC 58.746 52.381 8.59 0.00 0.00 2.73
3362 4678 0.732538 TACGCAGTGACACAGCATCG 60.733 55.000 21.08 12.02 45.73 3.84
3367 4683 1.263217 GGGTTTTACGCAGTGACACAG 59.737 52.381 8.59 0.12 45.73 3.66
3395 4711 3.733988 CGACAAGTATAAAGCTCGCCTCA 60.734 47.826 0.00 0.00 0.00 3.86
3434 4750 6.759356 GCAAGTGGGTGTTTAAAGTTAACAAT 59.241 34.615 8.61 0.00 37.26 2.71
3485 4802 3.665675 ATGGTCGCTGGTTCCTCGC 62.666 63.158 0.00 0.00 0.00 5.03
3486 4803 1.811266 CATGGTCGCTGGTTCCTCG 60.811 63.158 0.00 0.00 0.00 4.63
3487 4804 0.321653 AACATGGTCGCTGGTTCCTC 60.322 55.000 0.00 0.00 0.00 3.71
3488 4805 0.606401 CAACATGGTCGCTGGTTCCT 60.606 55.000 0.00 0.00 0.00 3.36
3503 4826 1.771073 CGCTTCGCCACAACTCAACA 61.771 55.000 0.00 0.00 0.00 3.33
3568 4891 0.608130 TGTCTCATACCGTGCTGCTT 59.392 50.000 0.00 0.00 0.00 3.91
3603 4926 3.111484 TGCTATGACCCCAATAGACACA 58.889 45.455 0.00 0.00 0.00 3.72
3605 4928 3.653164 TCTGCTATGACCCCAATAGACA 58.347 45.455 0.00 0.00 0.00 3.41
3890 5220 2.874219 TACCCCTGGCACCCATCCAT 62.874 60.000 0.00 0.00 30.82 3.41
3895 5225 2.933287 CTGTACCCCTGGCACCCA 60.933 66.667 0.00 0.00 0.00 4.51
4082 5418 2.169832 ATGTCGCCCCTGATATTTCG 57.830 50.000 0.00 0.00 0.00 3.46
4218 5674 9.801873 GTATGCAAAATATGTACAATTCCAGTT 57.198 29.630 0.00 0.00 0.00 3.16
4219 5675 8.413229 GGTATGCAAAATATGTACAATTCCAGT 58.587 33.333 0.00 0.00 0.00 4.00
4220 5676 7.867403 GGGTATGCAAAATATGTACAATTCCAG 59.133 37.037 0.00 0.00 0.00 3.86
4536 6166 7.443259 TTTCTTAGTGCAAGGTTGTATTACC 57.557 36.000 0.00 0.00 38.53 2.85
4539 6169 6.389906 GCATTTCTTAGTGCAAGGTTGTATT 58.610 36.000 0.00 0.00 40.94 1.89
4568 6198 7.621428 ATTCATATTAGCTGGATGCACATAC 57.379 36.000 0.00 0.00 45.94 2.39
4585 6215 9.265901 GACCGAGCAATATAGCATTATTCATAT 57.734 33.333 0.00 0.00 36.85 1.78
4588 6218 6.463360 TGACCGAGCAATATAGCATTATTCA 58.537 36.000 0.00 0.00 36.85 2.57
4844 6474 0.765510 ACTTGGAGCTTTCGGGAACT 59.234 50.000 0.00 0.00 0.00 3.01
4845 6475 2.074576 GTACTTGGAGCTTTCGGGAAC 58.925 52.381 0.00 0.00 0.00 3.62
4846 6476 1.002773 GGTACTTGGAGCTTTCGGGAA 59.997 52.381 0.00 0.00 0.00 3.97
4847 6477 0.611714 GGTACTTGGAGCTTTCGGGA 59.388 55.000 0.00 0.00 0.00 5.14
4848 6478 0.613777 AGGTACTTGGAGCTTTCGGG 59.386 55.000 0.00 0.00 27.25 5.14
5030 6671 8.251383 TCAAGAATAGAATATCCGAGGAACTT 57.749 34.615 0.00 0.00 41.55 2.66
5065 6706 7.005062 AGTGATCGCATATGTTTACTTGAAC 57.995 36.000 9.33 0.00 0.00 3.18
5083 6724 6.591834 AGTTGTACAGTAGCATGAAAGTGATC 59.408 38.462 0.00 0.00 0.00 2.92
5324 7007 6.849588 ACTTTGGTACTTAAACGTAACTGG 57.150 37.500 0.00 0.00 0.00 4.00
5327 7010 5.909054 GGCAACTTTGGTACTTAAACGTAAC 59.091 40.000 0.00 0.00 0.00 2.50
5328 7011 6.058827 GGCAACTTTGGTACTTAAACGTAA 57.941 37.500 0.00 0.00 0.00 3.18
5329 7012 5.671742 GGCAACTTTGGTACTTAAACGTA 57.328 39.130 0.00 0.00 0.00 3.57
5330 7013 4.556942 GGCAACTTTGGTACTTAAACGT 57.443 40.909 0.00 0.00 0.00 3.99
5380 7069 7.638444 TCCAATATTCTACATCTTTTCCCACA 58.362 34.615 0.00 0.00 0.00 4.17
5458 7149 6.204882 GTGATTTTCTGTTTGTAGGTACTGCT 59.795 38.462 0.00 0.00 43.07 4.24
5492 7183 7.551262 TGGAATAGTTTCATAGCTTCGCTTAAA 59.449 33.333 0.00 0.00 35.36 1.52
5556 7247 9.410556 GCTTATATAGGTTAAACAATGCAATGG 57.589 33.333 6.73 0.00 0.00 3.16
5557 7248 9.410556 GGCTTATATAGGTTAAACAATGCAATG 57.589 33.333 0.00 0.00 0.00 2.82
5558 7249 9.142014 TGGCTTATATAGGTTAAACAATGCAAT 57.858 29.630 0.00 0.00 0.00 3.56
5559 7250 8.526667 TGGCTTATATAGGTTAAACAATGCAA 57.473 30.769 0.00 0.00 0.00 4.08
5560 7251 7.996066 TCTGGCTTATATAGGTTAAACAATGCA 59.004 33.333 0.00 0.00 0.00 3.96
5561 7252 8.391075 TCTGGCTTATATAGGTTAAACAATGC 57.609 34.615 0.00 0.00 0.00 3.56
5562 7253 9.561069 ACTCTGGCTTATATAGGTTAAACAATG 57.439 33.333 0.00 0.00 0.00 2.82
5563 7254 9.561069 CACTCTGGCTTATATAGGTTAAACAAT 57.439 33.333 0.00 0.00 0.00 2.71
5564 7255 7.990886 CCACTCTGGCTTATATAGGTTAAACAA 59.009 37.037 0.00 0.00 0.00 2.83
5565 7256 7.346175 TCCACTCTGGCTTATATAGGTTAAACA 59.654 37.037 0.00 0.00 37.47 2.83
5566 7257 7.732996 TCCACTCTGGCTTATATAGGTTAAAC 58.267 38.462 0.00 0.00 37.47 2.01
5567 7258 7.787904 TCTCCACTCTGGCTTATATAGGTTAAA 59.212 37.037 0.00 0.00 37.47 1.52
5568 7259 7.302948 TCTCCACTCTGGCTTATATAGGTTAA 58.697 38.462 0.00 0.00 37.47 2.01
5569 7260 6.860034 TCTCCACTCTGGCTTATATAGGTTA 58.140 40.000 0.00 0.00 37.47 2.85
5570 7261 5.716979 TCTCCACTCTGGCTTATATAGGTT 58.283 41.667 0.00 0.00 37.47 3.50
5571 7262 5.340891 TCTCCACTCTGGCTTATATAGGT 57.659 43.478 0.00 0.00 37.47 3.08
5572 7263 6.268847 AGTTTCTCCACTCTGGCTTATATAGG 59.731 42.308 0.00 0.00 37.47 2.57
5573 7264 7.014711 TCAGTTTCTCCACTCTGGCTTATATAG 59.985 40.741 0.00 0.00 37.47 1.31
5574 7265 6.839134 TCAGTTTCTCCACTCTGGCTTATATA 59.161 38.462 0.00 0.00 37.47 0.86
5575 7266 5.663106 TCAGTTTCTCCACTCTGGCTTATAT 59.337 40.000 0.00 0.00 37.47 0.86
5576 7267 5.023452 TCAGTTTCTCCACTCTGGCTTATA 58.977 41.667 0.00 0.00 37.47 0.98
5577 7268 3.840666 TCAGTTTCTCCACTCTGGCTTAT 59.159 43.478 0.00 0.00 37.47 1.73
5578 7269 3.239449 TCAGTTTCTCCACTCTGGCTTA 58.761 45.455 0.00 0.00 37.47 3.09
5579 7270 2.050144 TCAGTTTCTCCACTCTGGCTT 58.950 47.619 0.00 0.00 37.47 4.35
5580 7271 1.722034 TCAGTTTCTCCACTCTGGCT 58.278 50.000 0.00 0.00 37.47 4.75
5581 7272 2.550180 GTTTCAGTTTCTCCACTCTGGC 59.450 50.000 0.00 0.00 37.47 4.85
5582 7273 3.812053 CAGTTTCAGTTTCTCCACTCTGG 59.188 47.826 0.00 0.00 39.43 3.86
5583 7274 3.812053 CCAGTTTCAGTTTCTCCACTCTG 59.188 47.826 0.00 0.00 0.00 3.35
5584 7275 3.181450 CCCAGTTTCAGTTTCTCCACTCT 60.181 47.826 0.00 0.00 0.00 3.24
5585 7276 3.142174 CCCAGTTTCAGTTTCTCCACTC 58.858 50.000 0.00 0.00 0.00 3.51
5586 7277 2.509964 ACCCAGTTTCAGTTTCTCCACT 59.490 45.455 0.00 0.00 0.00 4.00
5587 7278 2.618709 CACCCAGTTTCAGTTTCTCCAC 59.381 50.000 0.00 0.00 0.00 4.02
5588 7279 2.507886 TCACCCAGTTTCAGTTTCTCCA 59.492 45.455 0.00 0.00 0.00 3.86
5589 7280 3.208747 TCACCCAGTTTCAGTTTCTCC 57.791 47.619 0.00 0.00 0.00 3.71
5590 7281 5.586643 GGATATCACCCAGTTTCAGTTTCTC 59.413 44.000 4.83 0.00 0.00 2.87
5591 7282 5.014123 TGGATATCACCCAGTTTCAGTTTCT 59.986 40.000 4.83 0.00 0.00 2.52
5592 7283 5.253330 TGGATATCACCCAGTTTCAGTTTC 58.747 41.667 4.83 0.00 0.00 2.78
5593 7284 5.255397 TGGATATCACCCAGTTTCAGTTT 57.745 39.130 4.83 0.00 0.00 2.66
5594 7285 4.927267 TGGATATCACCCAGTTTCAGTT 57.073 40.909 4.83 0.00 0.00 3.16
5595 7286 5.440610 GAATGGATATCACCCAGTTTCAGT 58.559 41.667 4.83 0.00 37.08 3.41
5596 7287 4.823989 GGAATGGATATCACCCAGTTTCAG 59.176 45.833 4.83 0.00 37.08 3.02
5597 7288 4.229353 TGGAATGGATATCACCCAGTTTCA 59.771 41.667 4.83 0.00 37.08 2.69
5598 7289 4.792068 TGGAATGGATATCACCCAGTTTC 58.208 43.478 4.83 0.00 37.08 2.78
5599 7290 4.879295 TGGAATGGATATCACCCAGTTT 57.121 40.909 4.83 0.00 37.08 2.66
5600 7291 4.879295 TTGGAATGGATATCACCCAGTT 57.121 40.909 4.83 0.00 37.08 3.16
5601 7292 4.879295 TTTGGAATGGATATCACCCAGT 57.121 40.909 4.83 0.00 37.08 4.00
5602 7293 6.736110 AAATTTGGAATGGATATCACCCAG 57.264 37.500 4.83 0.00 37.08 4.45
5603 7294 6.267471 GCTAAATTTGGAATGGATATCACCCA 59.733 38.462 5.63 3.09 38.19 4.51
5604 7295 6.494835 AGCTAAATTTGGAATGGATATCACCC 59.505 38.462 5.63 0.47 0.00 4.61
5605 7296 7.530426 AGCTAAATTTGGAATGGATATCACC 57.470 36.000 5.63 3.17 0.00 4.02
5610 7301 9.920946 AACTCTTAGCTAAATTTGGAATGGATA 57.079 29.630 7.74 0.00 0.00 2.59
5611 7302 8.829373 AACTCTTAGCTAAATTTGGAATGGAT 57.171 30.769 7.74 0.00 0.00 3.41
5612 7303 9.747898 TTAACTCTTAGCTAAATTTGGAATGGA 57.252 29.630 7.74 0.00 0.00 3.41
5618 7309 9.788960 GGAACATTAACTCTTAGCTAAATTTGG 57.211 33.333 7.74 0.00 0.00 3.28
5656 7347 8.925161 TTGCTTATAGGTTAAACAATGCAATC 57.075 30.769 0.00 0.00 32.82 2.67
5680 7371 3.954258 CCACTTTCAGTTTCTCCACCTTT 59.046 43.478 0.00 0.00 0.00 3.11
5721 7412 2.446435 TCACATAGGGAGCTTTTTGCC 58.554 47.619 0.00 0.00 44.23 4.52
5765 7456 5.990996 ACAACACAAAGGCATAAAATGAAGG 59.009 36.000 0.00 0.00 0.00 3.46
5776 7467 5.361285 ACCAATTAGTTACAACACAAAGGCA 59.639 36.000 0.00 0.00 0.00 4.75
5797 7488 8.357402 GCAGTTATTTAAAGAAAGAGGAAACCA 58.643 33.333 0.00 0.00 0.00 3.67
5798 7489 8.357402 TGCAGTTATTTAAAGAAAGAGGAAACC 58.643 33.333 0.00 0.00 0.00 3.27
5945 7660 7.593273 CACCGTAAGAAAACATAATTGCAAAGA 59.407 33.333 1.71 0.00 43.02 2.52
6063 7780 5.220662 CGCAGAGTAAATCAACATTGGTAGG 60.221 44.000 0.00 0.00 0.00 3.18
6064 7781 5.351465 ACGCAGAGTAAATCAACATTGGTAG 59.649 40.000 0.00 0.00 0.00 3.18
6399 8138 7.754069 TCATGATTTTGAAAACAGTGAACAC 57.246 32.000 0.00 0.00 0.00 3.32
6430 8169 2.585845 GCCAAGCGAGCTAAAAGAAAC 58.414 47.619 0.00 0.00 0.00 2.78
6462 8201 8.445275 TGACTGTTGTGTGTAAAGTTTCATAT 57.555 30.769 0.00 0.00 0.00 1.78
6511 8250 9.912634 GGAATAACAATCAGATTTCAAAGTTCA 57.087 29.630 0.00 0.00 0.00 3.18
6512 8251 9.358872 GGGAATAACAATCAGATTTCAAAGTTC 57.641 33.333 0.00 0.00 0.00 3.01
6513 8252 9.093458 AGGGAATAACAATCAGATTTCAAAGTT 57.907 29.630 0.00 0.00 0.00 2.66
6541 8288 1.071299 TGAAGGAAGAAGCAGCGCA 59.929 52.632 11.47 0.00 0.00 6.09
6545 8292 4.861102 AATTTGGTGAAGGAAGAAGCAG 57.139 40.909 0.00 0.00 0.00 4.24
6593 8358 0.947244 CTGTGGTGTTGAGGTGAAGC 59.053 55.000 0.00 0.00 0.00 3.86
6687 8454 1.228367 AACAACCTCAGCTGCCCAG 60.228 57.895 9.47 0.70 0.00 4.45
6688 8455 1.529010 CAACAACCTCAGCTGCCCA 60.529 57.895 9.47 0.00 0.00 5.36
6689 8456 2.924105 GCAACAACCTCAGCTGCCC 61.924 63.158 9.47 0.00 0.00 5.36
6690 8457 2.647297 GCAACAACCTCAGCTGCC 59.353 61.111 9.47 0.00 0.00 4.85
6691 8458 2.647297 GGCAACAACCTCAGCTGC 59.353 61.111 9.47 0.00 0.00 5.25
6703 8470 2.674380 CTCAGGTGGGCTGGCAAC 60.674 66.667 2.88 0.89 0.00 4.17
6704 8471 4.666253 GCTCAGGTGGGCTGGCAA 62.666 66.667 2.88 0.00 0.00 4.52
6706 8473 4.792804 GAGCTCAGGTGGGCTGGC 62.793 72.222 9.65 0.00 39.05 4.85
6707 8474 4.463879 CGAGCTCAGGTGGGCTGG 62.464 72.222 9.65 3.93 39.05 4.85
6708 8475 3.368190 CTCGAGCTCAGGTGGGCTG 62.368 68.421 9.65 2.10 39.05 4.85
6709 8476 3.073735 CTCGAGCTCAGGTGGGCT 61.074 66.667 15.40 3.34 41.88 5.19
6710 8477 3.363844 GACTCGAGCTCAGGTGGGC 62.364 68.421 13.61 0.00 0.00 5.36
6711 8478 2.716017 GGACTCGAGCTCAGGTGGG 61.716 68.421 13.61 0.00 0.00 4.61
6712 8479 1.680651 AGGACTCGAGCTCAGGTGG 60.681 63.158 13.61 0.00 0.00 4.61
6713 8480 0.962855 TCAGGACTCGAGCTCAGGTG 60.963 60.000 13.61 9.49 0.00 4.00
6714 8481 0.963355 GTCAGGACTCGAGCTCAGGT 60.963 60.000 13.61 11.34 0.00 4.00
6715 8482 0.962855 TGTCAGGACTCGAGCTCAGG 60.963 60.000 13.61 7.94 0.00 3.86
6716 8483 0.170116 GTGTCAGGACTCGAGCTCAG 59.830 60.000 13.61 12.50 0.00 3.35
6717 8484 2.258317 GTGTCAGGACTCGAGCTCA 58.742 57.895 13.61 0.00 0.00 4.26
6727 8494 4.337060 CGCACGTCCGTGTCAGGA 62.337 66.667 19.67 0.00 46.90 3.86
6729 8496 4.640855 ACCGCACGTCCGTGTCAG 62.641 66.667 19.67 11.66 46.90 3.51
6730 8497 4.934942 CACCGCACGTCCGTGTCA 62.935 66.667 19.67 0.00 46.90 3.58
6743 8510 3.479269 GAAACTCCGCGAGCACCG 61.479 66.667 8.23 0.00 42.21 4.94
6744 8511 2.048127 AGAAACTCCGCGAGCACC 60.048 61.111 8.23 0.00 32.04 5.01
6745 8512 2.095252 GGAGAAACTCCGCGAGCAC 61.095 63.158 8.23 0.00 41.08 4.40
6746 8513 2.261671 GGAGAAACTCCGCGAGCA 59.738 61.111 8.23 0.00 41.08 4.26
6754 8521 6.879400 TGGCTCTTCTTTATAGGAGAAACTC 58.121 40.000 0.00 0.00 35.54 3.01
6755 8522 6.875972 TGGCTCTTCTTTATAGGAGAAACT 57.124 37.500 0.00 0.00 35.54 2.66
6756 8523 6.036191 CGTTGGCTCTTCTTTATAGGAGAAAC 59.964 42.308 0.00 0.00 35.54 2.78
6757 8524 6.070995 TCGTTGGCTCTTCTTTATAGGAGAAA 60.071 38.462 0.00 0.00 35.54 2.52
6758 8525 5.421056 TCGTTGGCTCTTCTTTATAGGAGAA 59.579 40.000 0.00 2.00 35.54 2.87
6759 8526 4.954202 TCGTTGGCTCTTCTTTATAGGAGA 59.046 41.667 0.00 0.00 34.71 3.71
6760 8527 5.263968 TCGTTGGCTCTTCTTTATAGGAG 57.736 43.478 0.00 0.00 0.00 3.69
6761 8528 4.099573 CCTCGTTGGCTCTTCTTTATAGGA 59.900 45.833 0.00 0.00 0.00 2.94
6762 8529 4.372656 CCTCGTTGGCTCTTCTTTATAGG 58.627 47.826 0.00 0.00 0.00 2.57
6763 8530 4.141914 ACCCTCGTTGGCTCTTCTTTATAG 60.142 45.833 0.00 0.00 0.00 1.31
6764 8531 3.773119 ACCCTCGTTGGCTCTTCTTTATA 59.227 43.478 0.00 0.00 0.00 0.98
6765 8532 2.572104 ACCCTCGTTGGCTCTTCTTTAT 59.428 45.455 0.00 0.00 0.00 1.40
6766 8533 1.975680 ACCCTCGTTGGCTCTTCTTTA 59.024 47.619 0.00 0.00 0.00 1.85
6767 8534 0.765510 ACCCTCGTTGGCTCTTCTTT 59.234 50.000 0.00 0.00 0.00 2.52
6768 8535 0.765510 AACCCTCGTTGGCTCTTCTT 59.234 50.000 0.00 0.00 0.00 2.52
6769 8536 1.550976 CTAACCCTCGTTGGCTCTTCT 59.449 52.381 0.00 0.00 33.17 2.85
6770 8537 1.275573 ACTAACCCTCGTTGGCTCTTC 59.724 52.381 0.00 0.00 33.96 2.87
6771 8538 1.275573 GACTAACCCTCGTTGGCTCTT 59.724 52.381 0.00 0.00 33.96 2.85
6772 8539 0.896226 GACTAACCCTCGTTGGCTCT 59.104 55.000 0.00 0.00 33.96 4.09
6773 8540 0.108281 GGACTAACCCTCGTTGGCTC 60.108 60.000 0.00 0.00 33.96 4.70
6774 8541 0.544595 AGGACTAACCCTCGTTGGCT 60.545 55.000 0.00 0.00 40.05 4.75
6775 8542 0.323957 AAGGACTAACCCTCGTTGGC 59.676 55.000 0.00 0.00 40.05 4.52
6776 8543 1.338769 CCAAGGACTAACCCTCGTTGG 60.339 57.143 5.70 5.70 43.58 3.77
6777 8544 1.338769 CCCAAGGACTAACCCTCGTTG 60.339 57.143 0.00 0.00 40.05 4.10
6778 8545 0.981943 CCCAAGGACTAACCCTCGTT 59.018 55.000 0.00 0.00 40.05 3.85
6779 8546 0.178912 ACCCAAGGACTAACCCTCGT 60.179 55.000 0.00 0.00 40.05 4.18
6780 8547 0.981943 AACCCAAGGACTAACCCTCG 59.018 55.000 0.00 0.00 40.05 4.63
6781 8548 1.004394 CCAACCCAAGGACTAACCCTC 59.996 57.143 0.00 0.00 40.05 4.30
6782 8549 1.073098 CCAACCCAAGGACTAACCCT 58.927 55.000 0.00 0.00 40.05 4.34
6783 8550 0.775542 ACCAACCCAAGGACTAACCC 59.224 55.000 0.00 0.00 40.05 4.11
6784 8551 1.703513 AGACCAACCCAAGGACTAACC 59.296 52.381 0.00 0.00 39.35 2.85
6785 8552 2.370849 TGAGACCAACCCAAGGACTAAC 59.629 50.000 0.00 0.00 31.38 2.34
6786 8553 2.696775 TGAGACCAACCCAAGGACTAA 58.303 47.619 0.00 0.00 31.38 2.24
6787 8554 2.409064 TGAGACCAACCCAAGGACTA 57.591 50.000 0.00 0.00 31.38 2.59
6788 8555 1.747444 ATGAGACCAACCCAAGGACT 58.253 50.000 0.00 0.00 33.89 3.85
6789 8556 2.586648 AATGAGACCAACCCAAGGAC 57.413 50.000 0.00 0.00 0.00 3.85
6790 8557 3.611025 AAAATGAGACCAACCCAAGGA 57.389 42.857 0.00 0.00 0.00 3.36
6808 8575 2.511900 ACGCCCCGTCCTCAAAAA 59.488 55.556 0.00 0.00 33.69 1.94
6837 8604 1.677966 AGCAACATCAGCTGCCCAG 60.678 57.895 9.47 0.73 41.61 4.45
6838 8605 2.437449 AGCAACATCAGCTGCCCA 59.563 55.556 9.47 0.00 41.61 5.36
6843 8610 2.341101 GCTGGCAGCAACATCAGCT 61.341 57.895 33.33 0.00 46.29 4.24
6844 8611 2.181021 GCTGGCAGCAACATCAGC 59.819 61.111 33.33 4.00 44.34 4.26
6845 8612 2.707849 GGGCTGGCAGCAACATCAG 61.708 63.158 37.49 0.50 44.75 2.90
6846 8613 2.677524 GGGCTGGCAGCAACATCA 60.678 61.111 37.49 0.00 44.75 3.07
6847 8614 2.012902 GATGGGCTGGCAGCAACATC 62.013 60.000 37.36 37.36 44.75 3.06
6848 8615 2.038329 ATGGGCTGGCAGCAACAT 59.962 55.556 37.49 33.71 44.75 2.71
6849 8616 2.677524 GATGGGCTGGCAGCAACA 60.678 61.111 37.49 33.15 44.75 3.33
6850 8617 3.455469 GGATGGGCTGGCAGCAAC 61.455 66.667 37.49 29.14 44.75 4.17
6854 8621 3.335356 AACTCGGATGGGCTGGCAG 62.335 63.158 10.94 10.94 0.00 4.85
6855 8622 3.329542 GAACTCGGATGGGCTGGCA 62.330 63.158 2.88 0.00 0.00 4.92
6856 8623 2.514824 GAACTCGGATGGGCTGGC 60.515 66.667 0.00 0.00 0.00 4.85
6857 8624 2.202932 CGAACTCGGATGGGCTGG 60.203 66.667 0.00 0.00 35.37 4.85
6858 8625 0.179073 ATTCGAACTCGGATGGGCTG 60.179 55.000 0.00 0.00 35.99 4.85
6859 8626 0.105039 GATTCGAACTCGGATGGGCT 59.895 55.000 0.00 0.00 37.77 5.19
6860 8627 0.880718 GGATTCGAACTCGGATGGGC 60.881 60.000 0.00 0.00 37.77 5.36
6861 8628 0.249911 GGGATTCGAACTCGGATGGG 60.250 60.000 0.00 0.00 37.77 4.00
6862 8629 0.597637 CGGGATTCGAACTCGGATGG 60.598 60.000 0.00 0.00 37.77 3.51
6863 8630 2.886859 CGGGATTCGAACTCGGATG 58.113 57.895 0.00 0.00 37.77 3.51
6867 8634 1.589196 GAGCCGGGATTCGAACTCG 60.589 63.158 2.18 6.52 42.43 4.18
6868 8635 1.589196 CGAGCCGGGATTCGAACTC 60.589 63.158 13.95 0.11 42.43 3.01
6869 8636 2.494918 CGAGCCGGGATTCGAACT 59.505 61.111 13.95 0.00 42.43 3.01
6870 8637 2.585247 CCGAGCCGGGATTCGAAC 60.585 66.667 18.96 0.00 44.15 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.