Multiple sequence alignment - TraesCS6A01G227900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G227900 chr6A 100.000 4862 0 0 1 4862 429399039 429394178 0.000000e+00 8979.0
1 TraesCS6A01G227900 chr6A 94.845 97 4 1 4019 4115 499205117 499205022 3.030000e-32 150.0
2 TraesCS6A01G227900 chr6D 92.720 3640 139 47 421 4020 292717015 292720568 0.000000e+00 5138.0
3 TraesCS6A01G227900 chr6D 89.270 233 13 8 4517 4741 292721763 292721991 1.030000e-71 281.0
4 TraesCS6A01G227900 chr6D 91.772 158 6 3 4232 4384 292720655 292720810 3.810000e-51 213.0
5 TraesCS6A01G227900 chr6D 95.041 121 5 1 4743 4862 292722073 292722193 6.420000e-44 189.0
6 TraesCS6A01G227900 chr6D 88.889 126 13 1 261 386 292683972 292684096 2.340000e-33 154.0
7 TraesCS6A01G227900 chr6D 93.878 98 5 1 4018 4115 222595193 222595289 3.920000e-31 147.0
8 TraesCS6A01G227900 chr6D 96.226 53 2 0 4180 4232 292720566 292720618 2.410000e-13 87.9
9 TraesCS6A01G227900 chr6B 91.474 2029 90 39 310 2318 457168167 457170132 0.000000e+00 2712.0
10 TraesCS6A01G227900 chr6B 95.339 1695 49 11 2354 4030 457170127 457171809 0.000000e+00 2665.0
11 TraesCS6A01G227900 chr6B 89.503 181 14 1 4566 4741 457172912 457173092 1.760000e-54 224.0
12 TraesCS6A01G227900 chr6B 90.323 155 12 3 4232 4384 457172004 457172157 2.970000e-47 200.0
13 TraesCS6A01G227900 chr6B 90.083 121 12 0 4399 4519 457172776 457172896 1.810000e-34 158.0
14 TraesCS6A01G227900 chr6B 93.878 98 5 1 4018 4115 525565720 525565624 3.920000e-31 147.0
15 TraesCS6A01G227900 chr6B 85.714 77 4 2 4156 4232 457171898 457171967 1.880000e-09 75.0
16 TraesCS6A01G227900 chr6B 93.333 45 3 0 4144 4188 664026840 664026884 3.140000e-07 67.6
17 TraesCS6A01G227900 chr6B 90.385 52 2 3 4144 4192 543802947 543802998 1.130000e-06 65.8
18 TraesCS6A01G227900 chr3D 90.076 262 22 3 7 265 16260575 16260835 2.170000e-88 337.0
19 TraesCS6A01G227900 chr2D 90.551 254 20 4 7 258 556947477 556947728 2.800000e-87 333.0
20 TraesCS6A01G227900 chr1A 90.588 255 19 5 7 258 518087202 518086950 2.800000e-87 333.0
21 TraesCS6A01G227900 chr1A 89.370 254 24 3 10 261 111154831 111154579 2.820000e-82 316.0
22 TraesCS6A01G227900 chr1A 95.349 43 2 0 4144 4186 77276520 77276562 8.730000e-08 69.4
23 TraesCS6A01G227900 chr3A 89.922 258 24 2 7 263 621215951 621215695 1.010000e-86 331.0
24 TraesCS6A01G227900 chr3A 97.436 39 1 0 4147 4185 514559423 514559385 3.140000e-07 67.6
25 TraesCS6A01G227900 chr5A 89.412 255 23 3 7 258 457057607 457057860 7.850000e-83 318.0
26 TraesCS6A01G227900 chr5A 89.020 255 24 3 7 258 326036165 326036418 3.650000e-81 313.0
27 TraesCS6A01G227900 chr7D 89.105 257 25 3 7 261 43129745 43129490 2.820000e-82 316.0
28 TraesCS6A01G227900 chr7D 88.417 259 27 3 7 263 206448072 206448329 4.730000e-80 309.0
29 TraesCS6A01G227900 chr7D 93.939 99 5 1 4017 4115 474273738 474273641 1.090000e-31 148.0
30 TraesCS6A01G227900 chr7A 94.898 98 4 1 4018 4115 134486775 134486871 8.430000e-33 152.0
31 TraesCS6A01G227900 chr7A 93.878 98 5 1 4018 4115 184652504 184652408 3.920000e-31 147.0
32 TraesCS6A01G227900 chr7A 97.500 40 1 0 4147 4186 209156758 209156719 8.730000e-08 69.4
33 TraesCS6A01G227900 chr2A 93.269 104 6 1 4012 4115 659096317 659096419 8.430000e-33 152.0
34 TraesCS6A01G227900 chr2A 93.023 43 3 0 4147 4189 63693600 63693558 4.060000e-06 63.9
35 TraesCS6A01G227900 chr4A 94.845 97 4 1 4019 4115 281354306 281354401 3.030000e-32 150.0
36 TraesCS6A01G227900 chr5B 88.034 117 10 4 4002 4115 57707998 57708113 8.490000e-28 135.0
37 TraesCS6A01G227900 chr7B 88.679 53 4 2 4147 4199 687842606 687842556 4.060000e-06 63.9
38 TraesCS6A01G227900 chr5D 89.796 49 3 2 4136 4182 447227841 447227889 1.460000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G227900 chr6A 429394178 429399039 4861 True 8979.000000 8979 100.0000 1 4862 1 chr6A.!!$R1 4861
1 TraesCS6A01G227900 chr6D 292717015 292722193 5178 False 1181.780000 5138 93.0058 421 4862 5 chr6D.!!$F3 4441
2 TraesCS6A01G227900 chr6B 457168167 457173092 4925 False 1005.666667 2712 90.4060 310 4741 6 chr6B.!!$F3 4431

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
283 284 0.168128 GTTTGCACCACGTATCCTGC 59.832 55.0 0.0 0.0 0.00 4.85 F
502 503 0.504384 CAGCACGCATAGTCGCATAC 59.496 55.0 0.0 0.0 32.06 2.39 F
1235 1251 0.681564 TCCTCCTTCGTCTGCTCCTC 60.682 60.0 0.0 0.0 0.00 3.71 F
1491 1519 1.729586 ACTGCTCCTACCAAGGTCAA 58.270 50.0 0.0 0.0 44.09 3.18 F
3137 3175 0.729116 CAAGCTCATACGCCACCAAG 59.271 55.0 0.0 0.0 0.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1160 1172 0.532640 CATGTATGCGGCAGCTGGTA 60.533 55.000 17.12 0.0 45.42 3.25 R
1626 1662 2.032681 GGAGACTTGGCGCAGGTT 59.967 61.111 10.83 0.0 0.00 3.50 R
3129 3167 0.743097 GATGGAGCATTCTTGGTGGC 59.257 55.000 0.00 0.0 32.62 5.01 R
3245 3283 0.244450 TACCGACGACCACACATTCC 59.756 55.000 0.00 0.0 0.00 3.01 R
4011 4066 0.333993 AACGGAGGGAGTACCAGCTA 59.666 55.000 0.00 0.0 43.89 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.021451 AGACTTTGGAAGCGTTGGG 57.979 52.632 0.00 0.00 0.00 4.12
19 20 0.472471 AGACTTTGGAAGCGTTGGGA 59.528 50.000 0.00 0.00 0.00 4.37
20 21 0.875059 GACTTTGGAAGCGTTGGGAG 59.125 55.000 0.00 0.00 0.00 4.30
21 22 1.172812 ACTTTGGAAGCGTTGGGAGC 61.173 55.000 0.00 0.00 0.00 4.70
22 23 2.187599 CTTTGGAAGCGTTGGGAGCG 62.188 60.000 0.00 0.00 40.04 5.03
23 24 4.697756 TGGAAGCGTTGGGAGCGG 62.698 66.667 0.00 0.00 40.04 5.52
24 25 4.388499 GGAAGCGTTGGGAGCGGA 62.388 66.667 0.00 0.00 40.04 5.54
25 26 2.815647 GAAGCGTTGGGAGCGGAG 60.816 66.667 0.00 0.00 40.04 4.63
26 27 4.394712 AAGCGTTGGGAGCGGAGG 62.395 66.667 0.00 0.00 40.04 4.30
29 30 4.452733 CGTTGGGAGCGGAGGGAC 62.453 72.222 0.00 0.00 0.00 4.46
31 32 3.003173 TTGGGAGCGGAGGGACTG 61.003 66.667 0.00 0.00 41.55 3.51
43 44 2.893398 GGACTGCTAGTGTCCCCG 59.107 66.667 19.74 0.00 46.01 5.73
44 45 1.681327 GGACTGCTAGTGTCCCCGA 60.681 63.158 19.74 0.00 46.01 5.14
45 46 1.511768 GACTGCTAGTGTCCCCGAC 59.488 63.158 6.72 0.00 0.00 4.79
46 47 1.228769 ACTGCTAGTGTCCCCGACA 60.229 57.895 0.00 0.00 40.50 4.35
47 48 1.251527 ACTGCTAGTGTCCCCGACAG 61.252 60.000 0.00 0.00 43.57 3.51
48 49 1.949847 CTGCTAGTGTCCCCGACAGG 61.950 65.000 0.00 0.00 43.57 4.00
49 50 2.893398 CTAGTGTCCCCGACAGGC 59.107 66.667 0.00 0.00 43.57 4.85
50 51 3.064987 CTAGTGTCCCCGACAGGCG 62.065 68.421 0.00 0.00 43.57 5.52
78 79 4.980805 GACAAGGGCGTGCGTCCA 62.981 66.667 17.75 0.00 43.56 4.02
79 80 4.988598 ACAAGGGCGTGCGTCCAG 62.989 66.667 17.75 11.47 43.56 3.86
100 101 3.712881 GTCCGCGCGCTTCTGTTT 61.713 61.111 30.48 0.00 0.00 2.83
101 102 3.411351 TCCGCGCGCTTCTGTTTC 61.411 61.111 30.48 0.00 0.00 2.78
102 103 3.711842 CCGCGCGCTTCTGTTTCA 61.712 61.111 30.48 0.00 0.00 2.69
103 104 2.497628 CGCGCGCTTCTGTTTCAC 60.498 61.111 30.48 0.00 0.00 3.18
104 105 2.127232 GCGCGCTTCTGTTTCACC 60.127 61.111 26.67 0.00 0.00 4.02
105 106 2.556287 CGCGCTTCTGTTTCACCC 59.444 61.111 5.56 0.00 0.00 4.61
106 107 2.954611 GCGCTTCTGTTTCACCCC 59.045 61.111 0.00 0.00 0.00 4.95
107 108 1.896660 GCGCTTCTGTTTCACCCCA 60.897 57.895 0.00 0.00 0.00 4.96
108 109 1.452145 GCGCTTCTGTTTCACCCCAA 61.452 55.000 0.00 0.00 0.00 4.12
109 110 1.028905 CGCTTCTGTTTCACCCCAAA 58.971 50.000 0.00 0.00 0.00 3.28
110 111 1.269051 CGCTTCTGTTTCACCCCAAAC 60.269 52.381 0.00 0.00 36.87 2.93
111 112 1.068588 GCTTCTGTTTCACCCCAAACC 59.931 52.381 0.00 0.00 35.69 3.27
112 113 1.336755 CTTCTGTTTCACCCCAAACCG 59.663 52.381 0.00 0.00 35.69 4.44
113 114 0.547075 TCTGTTTCACCCCAAACCGA 59.453 50.000 0.00 0.00 35.69 4.69
114 115 0.951558 CTGTTTCACCCCAAACCGAG 59.048 55.000 0.00 0.00 35.69 4.63
115 116 1.104577 TGTTTCACCCCAAACCGAGC 61.105 55.000 0.00 0.00 35.69 5.03
116 117 1.894756 TTTCACCCCAAACCGAGCG 60.895 57.895 0.00 0.00 0.00 5.03
119 120 4.572571 ACCCCAAACCGAGCGCAA 62.573 61.111 11.47 0.00 0.00 4.85
120 121 3.737172 CCCCAAACCGAGCGCAAG 61.737 66.667 11.47 1.89 43.44 4.01
121 122 2.978010 CCCAAACCGAGCGCAAGT 60.978 61.111 11.47 0.00 41.68 3.16
122 123 2.551912 CCCAAACCGAGCGCAAGTT 61.552 57.895 11.47 7.07 41.68 2.66
123 124 1.358759 CCAAACCGAGCGCAAGTTT 59.641 52.632 11.47 13.31 41.68 2.66
124 125 0.934436 CCAAACCGAGCGCAAGTTTG 60.934 55.000 28.51 28.51 46.28 2.93
125 126 2.399856 AAACCGAGCGCAAGTTTGA 58.600 47.368 17.95 0.00 41.68 2.69
126 127 0.307760 AAACCGAGCGCAAGTTTGAG 59.692 50.000 17.95 0.00 41.68 3.02
127 128 0.814010 AACCGAGCGCAAGTTTGAGT 60.814 50.000 11.47 0.00 41.68 3.41
128 129 1.222115 ACCGAGCGCAAGTTTGAGTC 61.222 55.000 11.47 0.00 41.68 3.36
129 130 1.128611 CGAGCGCAAGTTTGAGTCG 59.871 57.895 11.47 2.25 41.68 4.18
130 131 1.275471 CGAGCGCAAGTTTGAGTCGA 61.275 55.000 11.47 0.00 35.45 4.20
131 132 0.859232 GAGCGCAAGTTTGAGTCGAA 59.141 50.000 11.47 0.00 41.68 3.71
132 133 1.260561 GAGCGCAAGTTTGAGTCGAAA 59.739 47.619 11.47 0.00 41.68 3.46
133 134 1.668751 AGCGCAAGTTTGAGTCGAAAA 59.331 42.857 11.47 0.00 41.68 2.29
134 135 2.290641 AGCGCAAGTTTGAGTCGAAAAT 59.709 40.909 11.47 0.00 41.68 1.82
135 136 3.496884 AGCGCAAGTTTGAGTCGAAAATA 59.503 39.130 11.47 0.00 41.68 1.40
136 137 4.024387 AGCGCAAGTTTGAGTCGAAAATAA 60.024 37.500 11.47 0.00 41.68 1.40
137 138 4.318332 GCGCAAGTTTGAGTCGAAAATAAG 59.682 41.667 0.30 0.00 41.68 1.73
138 139 5.440685 CGCAAGTTTGAGTCGAAAATAAGT 58.559 37.500 0.00 0.00 0.00 2.24
139 140 5.560378 CGCAAGTTTGAGTCGAAAATAAGTC 59.440 40.000 0.00 0.00 0.00 3.01
140 141 5.560378 GCAAGTTTGAGTCGAAAATAAGTCG 59.440 40.000 0.00 0.00 39.88 4.18
141 142 6.563381 GCAAGTTTGAGTCGAAAATAAGTCGA 60.563 38.462 0.00 0.00 44.82 4.20
149 150 5.903764 TCGAAAATAAGTCGAAAACGGAA 57.096 34.783 0.00 0.00 44.10 4.30
150 151 5.908106 TCGAAAATAAGTCGAAAACGGAAG 58.092 37.500 0.00 0.00 44.10 3.46
151 152 5.077424 CGAAAATAAGTCGAAAACGGAAGG 58.923 41.667 0.00 0.00 41.02 3.46
152 153 5.107375 CGAAAATAAGTCGAAAACGGAAGGA 60.107 40.000 0.00 0.00 41.02 3.36
153 154 6.564499 CGAAAATAAGTCGAAAACGGAAGGAA 60.564 38.462 0.00 0.00 41.02 3.36
154 155 6.812879 AAATAAGTCGAAAACGGAAGGAAT 57.187 33.333 0.00 0.00 0.00 3.01
155 156 6.418585 AATAAGTCGAAAACGGAAGGAATC 57.581 37.500 0.00 0.00 0.00 2.52
156 157 2.696506 AGTCGAAAACGGAAGGAATCC 58.303 47.619 0.00 0.00 45.57 3.01
168 169 4.972514 GAAGGAATCCAGACATTTGTCC 57.027 45.455 0.61 0.00 45.85 4.02
169 170 2.991250 AGGAATCCAGACATTTGTCCG 58.009 47.619 0.61 0.00 45.85 4.79
170 171 2.305927 AGGAATCCAGACATTTGTCCGT 59.694 45.455 0.61 0.00 45.85 4.69
171 172 3.081804 GGAATCCAGACATTTGTCCGTT 58.918 45.455 7.07 0.00 45.85 4.44
172 173 3.506067 GGAATCCAGACATTTGTCCGTTT 59.494 43.478 7.07 0.48 45.85 3.60
173 174 4.475944 GAATCCAGACATTTGTCCGTTTG 58.524 43.478 7.07 0.00 45.85 2.93
174 175 3.201353 TCCAGACATTTGTCCGTTTGA 57.799 42.857 7.07 0.00 45.85 2.69
175 176 3.138304 TCCAGACATTTGTCCGTTTGAG 58.862 45.455 7.07 0.00 45.85 3.02
176 177 2.226437 CCAGACATTTGTCCGTTTGAGG 59.774 50.000 7.07 0.00 45.85 3.86
177 178 2.878406 CAGACATTTGTCCGTTTGAGGT 59.122 45.455 7.07 0.00 45.85 3.85
178 179 3.058914 CAGACATTTGTCCGTTTGAGGTC 60.059 47.826 7.07 0.00 45.85 3.85
179 180 2.875933 GACATTTGTCCGTTTGAGGTCA 59.124 45.455 0.00 0.00 39.07 4.02
180 181 2.616842 ACATTTGTCCGTTTGAGGTCAC 59.383 45.455 0.00 0.00 0.00 3.67
181 182 1.292061 TTTGTCCGTTTGAGGTCACG 58.708 50.000 0.00 0.00 36.12 4.35
182 183 1.155424 TTGTCCGTTTGAGGTCACGC 61.155 55.000 0.00 0.00 34.98 5.34
183 184 2.355363 TCCGTTTGAGGTCACGCG 60.355 61.111 3.53 3.53 34.98 6.01
184 185 4.072088 CCGTTTGAGGTCACGCGC 62.072 66.667 5.73 0.00 34.98 6.86
185 186 3.036084 CGTTTGAGGTCACGCGCT 61.036 61.111 5.73 0.00 0.00 5.92
186 187 2.551270 GTTTGAGGTCACGCGCTG 59.449 61.111 5.73 3.89 0.00 5.18
187 188 2.664851 TTTGAGGTCACGCGCTGG 60.665 61.111 5.73 0.00 0.00 4.85
188 189 4.680237 TTGAGGTCACGCGCTGGG 62.680 66.667 5.73 0.00 0.00 4.45
199 200 3.272334 CGCTGGGCCGCACTATTC 61.272 66.667 17.93 0.00 0.00 1.75
200 201 3.272334 GCTGGGCCGCACTATTCG 61.272 66.667 14.09 0.00 0.00 3.34
201 202 2.186903 CTGGGCCGCACTATTCGT 59.813 61.111 0.00 0.00 0.00 3.85
202 203 1.883084 CTGGGCCGCACTATTCGTC 60.883 63.158 0.00 0.00 0.00 4.20
203 204 2.298158 CTGGGCCGCACTATTCGTCT 62.298 60.000 0.00 0.00 0.00 4.18
204 205 1.883084 GGGCCGCACTATTCGTCTG 60.883 63.158 0.00 0.00 0.00 3.51
205 206 1.153628 GGCCGCACTATTCGTCTGT 60.154 57.895 0.00 0.00 0.00 3.41
206 207 0.739813 GGCCGCACTATTCGTCTGTT 60.740 55.000 0.00 0.00 0.00 3.16
207 208 1.076332 GCCGCACTATTCGTCTGTTT 58.924 50.000 0.00 0.00 0.00 2.83
208 209 1.463444 GCCGCACTATTCGTCTGTTTT 59.537 47.619 0.00 0.00 0.00 2.43
209 210 2.669434 GCCGCACTATTCGTCTGTTTTA 59.331 45.455 0.00 0.00 0.00 1.52
210 211 3.483085 GCCGCACTATTCGTCTGTTTTAC 60.483 47.826 0.00 0.00 0.00 2.01
211 212 3.061697 CCGCACTATTCGTCTGTTTTACC 59.938 47.826 0.00 0.00 0.00 2.85
212 213 3.924686 CGCACTATTCGTCTGTTTTACCT 59.075 43.478 0.00 0.00 0.00 3.08
213 214 4.387862 CGCACTATTCGTCTGTTTTACCTT 59.612 41.667 0.00 0.00 0.00 3.50
214 215 5.444218 CGCACTATTCGTCTGTTTTACCTTC 60.444 44.000 0.00 0.00 0.00 3.46
215 216 5.407387 GCACTATTCGTCTGTTTTACCTTCA 59.593 40.000 0.00 0.00 0.00 3.02
216 217 6.073440 GCACTATTCGTCTGTTTTACCTTCAA 60.073 38.462 0.00 0.00 0.00 2.69
217 218 7.519328 GCACTATTCGTCTGTTTTACCTTCAAA 60.519 37.037 0.00 0.00 0.00 2.69
218 219 7.797123 CACTATTCGTCTGTTTTACCTTCAAAC 59.203 37.037 0.00 0.00 35.11 2.93
219 220 4.782252 TCGTCTGTTTTACCTTCAAACG 57.218 40.909 0.00 0.00 37.00 3.60
220 221 3.556775 TCGTCTGTTTTACCTTCAAACGG 59.443 43.478 0.00 0.00 40.51 4.44
221 222 3.556775 CGTCTGTTTTACCTTCAAACGGA 59.443 43.478 3.45 3.45 43.96 4.69
223 224 3.556775 TCTGTTTTACCTTCAAACGGACG 59.443 43.478 3.45 0.00 42.20 4.79
224 225 3.269178 TGTTTTACCTTCAAACGGACGT 58.731 40.909 0.00 0.00 37.00 4.34
225 226 3.063725 TGTTTTACCTTCAAACGGACGTG 59.936 43.478 0.00 0.00 37.00 4.49
226 227 1.219646 TTACCTTCAAACGGACGTGC 58.780 50.000 0.00 0.00 0.00 5.34
227 228 0.940519 TACCTTCAAACGGACGTGCG 60.941 55.000 28.33 28.33 0.00 5.34
228 229 2.127758 CTTCAAACGGACGTGCGC 60.128 61.111 29.80 0.00 0.00 6.09
229 230 3.887078 CTTCAAACGGACGTGCGCG 62.887 63.158 29.80 19.78 44.93 6.86
237 238 4.796231 GACGTGCGCGGACAGGAT 62.796 66.667 30.05 12.35 43.45 3.24
243 244 4.873129 CGCGGACAGGATGGGTCG 62.873 72.222 0.00 0.00 43.62 4.79
245 246 4.873129 CGGACAGGATGGGTCGCG 62.873 72.222 0.00 0.00 43.62 5.87
261 262 2.571757 CGCGCTGGAGTTGGTCTA 59.428 61.111 5.56 0.00 0.00 2.59
262 263 1.080093 CGCGCTGGAGTTGGTCTAA 60.080 57.895 5.56 0.00 0.00 2.10
263 264 0.460284 CGCGCTGGAGTTGGTCTAAT 60.460 55.000 5.56 0.00 0.00 1.73
264 265 1.009829 GCGCTGGAGTTGGTCTAATG 58.990 55.000 0.00 0.00 0.00 1.90
265 266 1.676014 GCGCTGGAGTTGGTCTAATGT 60.676 52.381 0.00 0.00 0.00 2.71
266 267 2.699954 CGCTGGAGTTGGTCTAATGTT 58.300 47.619 0.00 0.00 0.00 2.71
267 268 3.074412 CGCTGGAGTTGGTCTAATGTTT 58.926 45.455 0.00 0.00 0.00 2.83
268 269 3.120199 CGCTGGAGTTGGTCTAATGTTTG 60.120 47.826 0.00 0.00 0.00 2.93
269 270 3.366374 GCTGGAGTTGGTCTAATGTTTGC 60.366 47.826 0.00 0.00 0.00 3.68
270 271 3.820467 CTGGAGTTGGTCTAATGTTTGCA 59.180 43.478 0.00 0.00 0.00 4.08
271 272 3.568007 TGGAGTTGGTCTAATGTTTGCAC 59.432 43.478 0.00 0.00 0.00 4.57
272 273 3.057526 GGAGTTGGTCTAATGTTTGCACC 60.058 47.826 0.00 0.00 0.00 5.01
273 274 3.561143 AGTTGGTCTAATGTTTGCACCA 58.439 40.909 0.00 0.00 35.26 4.17
274 275 3.317993 AGTTGGTCTAATGTTTGCACCAC 59.682 43.478 0.00 0.00 36.85 4.16
275 276 1.876799 TGGTCTAATGTTTGCACCACG 59.123 47.619 0.00 0.00 31.99 4.94
276 277 1.877443 GGTCTAATGTTTGCACCACGT 59.123 47.619 0.00 0.00 0.00 4.49
277 278 3.068560 GGTCTAATGTTTGCACCACGTA 58.931 45.455 0.00 0.00 0.00 3.57
278 279 3.687698 GGTCTAATGTTTGCACCACGTAT 59.312 43.478 0.00 0.00 0.00 3.06
279 280 4.201783 GGTCTAATGTTTGCACCACGTATC 60.202 45.833 0.00 0.00 0.00 2.24
280 281 3.936453 TCTAATGTTTGCACCACGTATCC 59.064 43.478 0.00 0.00 0.00 2.59
281 282 2.489938 ATGTTTGCACCACGTATCCT 57.510 45.000 0.00 0.00 0.00 3.24
282 283 1.518325 TGTTTGCACCACGTATCCTG 58.482 50.000 0.00 0.00 0.00 3.86
283 284 0.168128 GTTTGCACCACGTATCCTGC 59.832 55.000 0.00 0.00 0.00 4.85
284 285 1.295357 TTTGCACCACGTATCCTGCG 61.295 55.000 0.00 0.00 31.96 5.18
285 286 2.161078 TTGCACCACGTATCCTGCGA 62.161 55.000 0.00 0.00 31.96 5.10
286 287 2.165301 GCACCACGTATCCTGCGAC 61.165 63.158 0.00 0.00 0.00 5.19
287 288 1.511305 CACCACGTATCCTGCGACT 59.489 57.895 0.00 0.00 0.00 4.18
288 289 0.525668 CACCACGTATCCTGCGACTC 60.526 60.000 0.00 0.00 0.00 3.36
289 290 1.065928 CCACGTATCCTGCGACTCC 59.934 63.158 0.00 0.00 0.00 3.85
290 291 1.298413 CACGTATCCTGCGACTCCG 60.298 63.158 0.00 0.00 39.16 4.63
291 292 1.450848 ACGTATCCTGCGACTCCGA 60.451 57.895 0.00 0.00 38.22 4.55
292 293 1.280142 CGTATCCTGCGACTCCGAG 59.720 63.158 0.00 0.00 38.22 4.63
293 294 1.655329 GTATCCTGCGACTCCGAGG 59.345 63.158 0.00 0.00 38.22 4.63
294 295 2.194212 TATCCTGCGACTCCGAGGC 61.194 63.158 0.00 0.00 38.22 4.70
295 296 2.904178 TATCCTGCGACTCCGAGGCA 62.904 60.000 1.23 0.65 38.22 4.75
301 302 3.760035 GACTCCGAGGCAGGCGAA 61.760 66.667 0.00 0.00 0.00 4.70
302 303 3.708220 GACTCCGAGGCAGGCGAAG 62.708 68.421 0.00 0.00 0.00 3.79
321 322 4.760047 ATGTCGGCAGGCGACCAC 62.760 66.667 37.86 20.82 35.71 4.16
323 324 3.755628 GTCGGCAGGCGACCACTA 61.756 66.667 33.49 3.50 0.00 2.74
418 419 4.974792 CGGGAGGAGATATGCGTG 57.025 61.111 0.00 0.00 0.00 5.34
419 420 2.341452 CGGGAGGAGATATGCGTGA 58.659 57.895 0.00 0.00 0.00 4.35
469 470 4.051237 GCTTCGTTCCATTTTCAGCTTTT 58.949 39.130 0.00 0.00 0.00 2.27
470 471 4.084900 GCTTCGTTCCATTTTCAGCTTTTG 60.085 41.667 0.00 0.00 0.00 2.44
482 483 1.775208 CAGCTTTTGTTTTCGCTGTCG 59.225 47.619 0.00 0.00 43.53 4.35
484 485 1.821336 CTTTTGTTTTCGCTGTCGCA 58.179 45.000 0.00 0.00 35.30 5.10
494 495 3.001067 CTGTCGCAGCACGCATAG 58.999 61.111 0.00 0.00 42.60 2.23
495 496 1.807165 CTGTCGCAGCACGCATAGT 60.807 57.895 0.00 0.00 42.60 2.12
496 497 1.746727 CTGTCGCAGCACGCATAGTC 61.747 60.000 0.00 0.00 42.60 2.59
497 498 2.579518 TCGCAGCACGCATAGTCG 60.580 61.111 0.00 0.00 42.60 4.18
498 499 4.271170 CGCAGCACGCATAGTCGC 62.271 66.667 0.00 0.00 42.60 5.19
499 500 3.188100 GCAGCACGCATAGTCGCA 61.188 61.111 0.00 0.00 41.79 5.10
500 501 2.528743 GCAGCACGCATAGTCGCAT 61.529 57.895 0.00 0.00 41.79 4.73
501 502 1.215014 GCAGCACGCATAGTCGCATA 61.215 55.000 0.00 0.00 41.79 3.14
502 503 0.504384 CAGCACGCATAGTCGCATAC 59.496 55.000 0.00 0.00 32.06 2.39
503 504 0.934901 AGCACGCATAGTCGCATACG 60.935 55.000 0.00 0.00 42.01 3.06
504 505 1.876453 GCACGCATAGTCGCATACGG 61.876 60.000 0.00 0.00 40.63 4.02
505 506 1.660575 ACGCATAGTCGCATACGGC 60.661 57.895 0.00 0.00 46.74 5.68
519 520 0.838987 TACGGCCCCCTAATCCATCC 60.839 60.000 0.00 0.00 0.00 3.51
562 563 1.460504 TAGTCCACGCACTCCACTAG 58.539 55.000 0.00 0.00 0.00 2.57
563 564 1.446272 GTCCACGCACTCCACTAGC 60.446 63.158 0.00 0.00 0.00 3.42
564 565 1.906333 TCCACGCACTCCACTAGCA 60.906 57.895 0.00 0.00 0.00 3.49
565 566 1.446792 CCACGCACTCCACTAGCAG 60.447 63.158 0.00 0.00 0.00 4.24
566 567 1.446792 CACGCACTCCACTAGCAGG 60.447 63.158 0.00 0.00 0.00 4.85
567 568 1.606601 ACGCACTCCACTAGCAGGA 60.607 57.895 4.60 4.60 0.00 3.86
610 611 2.560896 GCGTTTAGCTCAAAAGACACG 58.439 47.619 0.00 0.00 44.04 4.49
611 612 2.560896 CGTTTAGCTCAAAAGACACGC 58.439 47.619 0.00 0.00 0.00 5.34
612 613 2.033236 CGTTTAGCTCAAAAGACACGCA 60.033 45.455 0.00 0.00 0.00 5.24
613 614 3.289076 GTTTAGCTCAAAAGACACGCAC 58.711 45.455 0.00 0.00 0.00 5.34
614 615 1.136690 TAGCTCAAAAGACACGCACG 58.863 50.000 0.00 0.00 0.00 5.34
841 851 3.961576 GAGCGGCTCGGTTTACTAT 57.038 52.632 15.09 0.00 37.83 2.12
848 858 4.321082 GCGGCTCGGTTTACTATCTATTCT 60.321 45.833 0.00 0.00 0.00 2.40
999 1011 4.171103 GCCACCGCCCCGAATAGT 62.171 66.667 0.00 0.00 0.00 2.12
1017 1029 6.018994 CGAATAGTTTTAGCATACCACCAGAC 60.019 42.308 0.00 0.00 0.00 3.51
1118 1130 2.440065 GGCCGCAACCCATCATCA 60.440 61.111 0.00 0.00 0.00 3.07
1126 1138 1.644437 AACCCATCATCATCCGGCCA 61.644 55.000 2.24 0.00 0.00 5.36
1128 1140 1.148949 CCATCATCATCCGGCCACA 59.851 57.895 2.24 0.00 0.00 4.17
1160 1172 2.198304 GAGCCGAGTTGATTGGGGGT 62.198 60.000 0.00 0.00 32.21 4.95
1161 1173 0.912487 AGCCGAGTTGATTGGGGGTA 60.912 55.000 0.00 0.00 32.21 3.69
1189 1202 1.332195 CGCATACATGGAGGAGGAGA 58.668 55.000 0.00 0.00 0.00 3.71
1229 1245 1.803943 CCTCGTCCTCCTTCGTCTG 59.196 63.158 0.00 0.00 0.00 3.51
1233 1249 1.513622 GTCCTCCTTCGTCTGCTCC 59.486 63.158 0.00 0.00 0.00 4.70
1234 1250 0.968393 GTCCTCCTTCGTCTGCTCCT 60.968 60.000 0.00 0.00 0.00 3.69
1235 1251 0.681564 TCCTCCTTCGTCTGCTCCTC 60.682 60.000 0.00 0.00 0.00 3.71
1261 1277 2.899339 GCGGGCTCTGCTGATTCC 60.899 66.667 0.00 0.00 0.00 3.01
1275 1291 4.781959 TTCCTCGTAACGCGCCCG 62.782 66.667 5.73 6.11 41.07 6.13
1448 1476 4.778415 CGACCCCGACAGCTCACG 62.778 72.222 2.56 2.56 38.22 4.35
1491 1519 1.729586 ACTGCTCCTACCAAGGTCAA 58.270 50.000 0.00 0.00 44.09 3.18
1509 1537 4.321230 GGTCAATTCACCTTAGGCTTGTTG 60.321 45.833 0.00 0.00 33.08 3.33
1575 1605 5.348986 AGTACAACTAGTATCGCCATGTTG 58.651 41.667 0.00 0.00 40.11 3.33
1605 1641 1.892819 ATGTCTCTGGTGCTCGGTGG 61.893 60.000 0.00 0.00 0.00 4.61
1797 1833 2.171237 CCCCATCATCAGTAAGCTGTCA 59.829 50.000 0.00 0.00 43.05 3.58
1798 1834 3.181447 CCCCATCATCAGTAAGCTGTCAT 60.181 47.826 0.00 0.00 43.05 3.06
1843 1879 1.905894 TCCTGTGCCATGCTTGTAGTA 59.094 47.619 0.00 0.00 0.00 1.82
2013 2050 3.181479 CGAAGGAGACGGATGGTAAATCA 60.181 47.826 0.00 0.00 0.00 2.57
2068 2105 6.743575 TTAAAAGAATGCTCTAAGCTGGTC 57.256 37.500 0.11 0.00 42.97 4.02
2106 2143 6.908825 TGCTGTACTGTTTATGAATTGTTCC 58.091 36.000 1.46 0.00 0.00 3.62
2247 2284 2.605823 GGACGAGACAGATGATAAGCCG 60.606 54.545 0.00 0.00 0.00 5.52
2295 2332 7.277981 ACAAATACCTCGAGTCAACATGAATAC 59.722 37.037 12.31 0.00 0.00 1.89
2344 2381 3.662247 AGGAAGTTCTACAACTGTCCG 57.338 47.619 2.25 0.00 42.45 4.79
2376 2413 7.495934 TGGTTTTCTCTTTCTTTCTCTGTAGTG 59.504 37.037 0.00 0.00 0.00 2.74
2604 2642 5.710099 TGTCTTCAGTCTGACCTTTGTTTTT 59.290 36.000 0.78 0.00 32.67 1.94
2638 2676 4.935352 TTTTGTTTTGTCCCCTCTCATG 57.065 40.909 0.00 0.00 0.00 3.07
2952 2990 2.880890 GCCTATGCAGTATCCTTTGGTG 59.119 50.000 0.00 0.00 37.47 4.17
3129 3167 2.001812 ACACTGCTCAAGCTCATACG 57.998 50.000 3.32 0.00 42.66 3.06
3137 3175 0.729116 CAAGCTCATACGCCACCAAG 59.271 55.000 0.00 0.00 0.00 3.61
3245 3283 2.661504 TCAAGTCATTTGTCAACGCG 57.338 45.000 3.53 3.53 38.01 6.01
3312 3350 1.271934 CATAGTCGATCTGGCAGGAGG 59.728 57.143 15.73 3.98 0.00 4.30
3551 3589 3.582647 TCACCAGAATAGCTGAAAGGTCA 59.417 43.478 0.00 0.00 44.61 4.02
3565 3603 8.099537 AGCTGAAAGGTCATATTATATGTGGAG 58.900 37.037 11.44 2.48 44.61 3.86
3627 3665 9.231297 AGTACACATATGCAATACATTATTCCC 57.769 33.333 1.58 0.00 40.38 3.97
3671 3709 5.627499 TGCTTTCACAATACATCCTCAAC 57.373 39.130 0.00 0.00 0.00 3.18
3785 3826 5.357742 AGTCAGTGATACACATGGCATTA 57.642 39.130 0.00 0.00 36.74 1.90
3787 3828 7.066307 AGTCAGTGATACACATGGCATTATA 57.934 36.000 0.00 0.00 36.74 0.98
3917 3972 6.355397 CCTAGCGGCAATGATTCTTATATG 57.645 41.667 1.45 0.00 0.00 1.78
3922 3977 3.448660 GGCAATGATTCTTATATGGGGGC 59.551 47.826 0.00 0.00 0.00 5.80
3982 4037 4.201990 TGCAAAATTGGAAATTGTGGTTGC 60.202 37.500 10.66 10.66 39.35 4.17
4009 4064 2.463589 CTTGCCAGTCGCCCCTTACA 62.464 60.000 0.00 0.00 36.24 2.41
4011 4066 1.077716 GCCAGTCGCCCCTTACATT 60.078 57.895 0.00 0.00 0.00 2.71
4030 4085 0.333993 TAGCTGGTACTCCCTCCGTT 59.666 55.000 0.00 0.00 0.00 4.44
4032 4087 1.957765 GCTGGTACTCCCTCCGTTCC 61.958 65.000 0.00 0.00 0.00 3.62
4036 4091 1.558294 GGTACTCCCTCCGTTCCAAAT 59.442 52.381 0.00 0.00 0.00 2.32
4038 4093 3.198417 GGTACTCCCTCCGTTCCAAATTA 59.802 47.826 0.00 0.00 0.00 1.40
4041 4096 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
4045 4100 3.124636 CCTCCGTTCCAAATTACTCGTTG 59.875 47.826 0.00 0.00 0.00 4.10
4046 4101 2.481185 TCCGTTCCAAATTACTCGTTGC 59.519 45.455 0.00 0.00 0.00 4.17
4050 4105 4.319190 CGTTCCAAATTACTCGTTGCAGAA 60.319 41.667 0.00 0.00 0.00 3.02
4051 4106 5.516090 GTTCCAAATTACTCGTTGCAGAAA 58.484 37.500 0.00 0.00 0.00 2.52
4062 4126 5.065218 ACTCGTTGCAGAAAATGGATGTATC 59.935 40.000 0.00 0.00 0.00 2.24
4065 4129 6.479990 TCGTTGCAGAAAATGGATGTATCTAG 59.520 38.462 0.00 0.00 0.00 2.43
4066 4130 6.479990 CGTTGCAGAAAATGGATGTATCTAGA 59.520 38.462 0.00 0.00 0.00 2.43
4077 4141 9.851686 AATGGATGTATCTAGAACTAAAATGCA 57.148 29.630 0.00 0.00 0.00 3.96
4098 4162 7.838771 TGCATCTAGATACATTCATACATGC 57.161 36.000 4.54 2.05 34.74 4.06
4099 4163 6.532657 TGCATCTAGATACATTCATACATGCG 59.467 38.462 4.54 0.00 36.52 4.73
4100 4164 6.753744 GCATCTAGATACATTCATACATGCGA 59.246 38.462 4.54 0.00 0.00 5.10
4101 4165 7.253917 GCATCTAGATACATTCATACATGCGAC 60.254 40.741 4.54 0.00 0.00 5.19
4104 4168 6.775939 AGATACATTCATACATGCGACAAG 57.224 37.500 0.00 0.00 0.00 3.16
4105 4169 6.283694 AGATACATTCATACATGCGACAAGT 58.716 36.000 0.00 0.00 0.00 3.16
4106 4170 7.433680 AGATACATTCATACATGCGACAAGTA 58.566 34.615 0.00 0.00 0.00 2.24
4108 4172 6.925610 ACATTCATACATGCGACAAGTAAT 57.074 33.333 0.00 0.00 0.00 1.89
4109 4173 7.320443 ACATTCATACATGCGACAAGTAATT 57.680 32.000 0.00 0.00 0.00 1.40
4110 4174 7.761409 ACATTCATACATGCGACAAGTAATTT 58.239 30.769 0.00 0.00 0.00 1.82
4111 4175 7.697710 ACATTCATACATGCGACAAGTAATTTG 59.302 33.333 0.00 0.00 42.68 2.32
4112 4176 6.117911 TCATACATGCGACAAGTAATTTGG 57.882 37.500 0.00 0.00 41.25 3.28
4113 4177 5.877564 TCATACATGCGACAAGTAATTTGGA 59.122 36.000 0.00 0.00 41.25 3.53
4114 4178 6.372937 TCATACATGCGACAAGTAATTTGGAA 59.627 34.615 0.00 0.00 41.25 3.53
4115 4179 5.446143 ACATGCGACAAGTAATTTGGAAA 57.554 34.783 0.00 0.00 41.25 3.13
4116 4180 6.024552 ACATGCGACAAGTAATTTGGAAAT 57.975 33.333 0.00 0.00 41.25 2.17
4117 4181 6.454795 ACATGCGACAAGTAATTTGGAAATT 58.545 32.000 0.00 3.02 41.25 1.82
4118 4182 6.586082 ACATGCGACAAGTAATTTGGAAATTC 59.414 34.615 0.60 0.00 41.25 2.17
4119 4183 6.078202 TGCGACAAGTAATTTGGAAATTCA 57.922 33.333 0.60 0.00 41.25 2.57
4120 4184 6.686630 TGCGACAAGTAATTTGGAAATTCAT 58.313 32.000 0.60 0.00 41.25 2.57
4121 4185 7.821652 TGCGACAAGTAATTTGGAAATTCATA 58.178 30.769 0.60 0.00 41.25 2.15
4122 4186 7.753132 TGCGACAAGTAATTTGGAAATTCATAC 59.247 33.333 0.60 0.00 41.25 2.39
4123 4187 7.753132 GCGACAAGTAATTTGGAAATTCATACA 59.247 33.333 0.60 0.00 41.25 2.29
4124 4188 9.787532 CGACAAGTAATTTGGAAATTCATACAT 57.212 29.630 0.60 0.00 41.25 2.29
4126 4190 9.369904 ACAAGTAATTTGGAAATTCATACATGC 57.630 29.630 0.60 0.00 41.25 4.06
4127 4191 8.533965 CAAGTAATTTGGAAATTCATACATGCG 58.466 33.333 0.60 0.00 39.24 4.73
4128 4192 7.995289 AGTAATTTGGAAATTCATACATGCGA 58.005 30.769 0.60 0.00 39.24 5.10
4129 4193 8.632679 AGTAATTTGGAAATTCATACATGCGAT 58.367 29.630 0.60 0.00 39.24 4.58
4130 4194 9.891828 GTAATTTGGAAATTCATACATGCGATA 57.108 29.630 0.60 0.00 39.24 2.92
4132 4196 9.467258 AATTTGGAAATTCATACATGCGATAAG 57.533 29.630 0.00 0.00 33.54 1.73
4133 4197 7.566760 TTGGAAATTCATACATGCGATAAGT 57.433 32.000 0.00 0.00 0.00 2.24
4134 4198 8.669946 TTGGAAATTCATACATGCGATAAGTA 57.330 30.769 0.00 0.00 0.00 2.24
4135 4199 8.669946 TGGAAATTCATACATGCGATAAGTAA 57.330 30.769 0.00 0.00 0.00 2.24
4136 4200 9.283768 TGGAAATTCATACATGCGATAAGTAAT 57.716 29.630 0.00 0.00 0.00 1.89
4140 4204 9.897744 AATTCATACATGCGATAAGTAATTTGG 57.102 29.630 0.00 0.00 0.00 3.28
4141 4205 8.669946 TTCATACATGCGATAAGTAATTTGGA 57.330 30.769 0.00 0.00 0.00 3.53
4142 4206 8.669946 TCATACATGCGATAAGTAATTTGGAA 57.330 30.769 0.00 0.00 0.00 3.53
4143 4207 9.114952 TCATACATGCGATAAGTAATTTGGAAA 57.885 29.630 0.00 0.00 0.00 3.13
4144 4208 9.897744 CATACATGCGATAAGTAATTTGGAAAT 57.102 29.630 0.00 0.00 0.00 2.17
4146 4210 8.856490 ACATGCGATAAGTAATTTGGAAATTC 57.144 30.769 0.60 0.00 39.24 2.17
4147 4211 8.465999 ACATGCGATAAGTAATTTGGAAATTCA 58.534 29.630 0.60 0.00 39.24 2.57
4148 4212 9.467258 CATGCGATAAGTAATTTGGAAATTCAT 57.533 29.630 0.60 0.00 39.24 2.57
4150 4214 9.944663 TGCGATAAGTAATTTGGAAATTCATAC 57.055 29.630 0.60 0.00 39.24 2.39
4151 4215 9.944663 GCGATAAGTAATTTGGAAATTCATACA 57.055 29.630 0.60 0.00 39.24 2.29
4157 4221 7.915397 AGTAATTTGGAAATTCATACATGCGAC 59.085 33.333 0.60 0.00 39.24 5.19
4163 4227 6.372937 TGGAAATTCATACATGCGACAAGTAA 59.627 34.615 0.00 0.00 0.00 2.24
4169 4233 5.877564 TCATACATGCGACAAGTAATTTGGA 59.122 36.000 0.00 0.00 41.25 3.53
4185 4249 4.748277 TTTGGAACGGAGGGAGTATTAG 57.252 45.455 0.00 0.00 0.00 1.73
4194 4258 4.556898 CGGAGGGAGTATTAGACATGAACG 60.557 50.000 0.00 0.00 0.00 3.95
4232 4296 4.473196 TCATTAACAGGCAAGGTGAGGATA 59.527 41.667 0.00 0.00 0.00 2.59
4235 4299 2.769209 ACAGGCAAGGTGAGGATATCT 58.231 47.619 2.05 0.00 0.00 1.98
4250 4355 8.458843 GTGAGGATATCTTTCTCTAGCTCATAC 58.541 40.741 2.05 0.00 0.00 2.39
4254 4359 8.948145 GGATATCTTTCTCTAGCTCATACGTAA 58.052 37.037 0.00 0.00 0.00 3.18
4297 4402 5.743026 TGCAATTTCAGTTCAGTTCGTAA 57.257 34.783 0.00 0.00 0.00 3.18
4299 4404 5.968848 TGCAATTTCAGTTCAGTTCGTAAAC 59.031 36.000 0.00 0.00 35.50 2.01
4300 4405 5.968848 GCAATTTCAGTTCAGTTCGTAAACA 59.031 36.000 0.00 0.00 37.88 2.83
4390 4497 9.791801 AAATATCTTTTTACTTTGCCATTGGTT 57.208 25.926 4.26 0.00 0.00 3.67
4391 4498 9.791801 AATATCTTTTTACTTTGCCATTGGTTT 57.208 25.926 4.26 0.00 0.00 3.27
4392 4499 6.917217 TCTTTTTACTTTGCCATTGGTTTG 57.083 33.333 4.26 0.00 0.00 2.93
4393 4500 6.410540 TCTTTTTACTTTGCCATTGGTTTGT 58.589 32.000 4.26 1.86 0.00 2.83
4396 4503 3.902881 ACTTTGCCATTGGTTTGTCAA 57.097 38.095 4.26 0.00 0.00 3.18
4403 5762 5.188434 TGCCATTGGTTTGTCAAATTTCAA 58.812 33.333 4.26 7.52 0.00 2.69
4472 5831 6.928979 TTCAGATTTGAACTCCAACGTTAA 57.071 33.333 0.00 0.00 38.37 2.01
4477 5836 6.540914 AGATTTGAACTCCAACGTTAACAAGA 59.459 34.615 0.00 0.00 33.85 3.02
4500 5859 3.621268 TGTGAACGAGAAAACTGGACAAG 59.379 43.478 0.00 0.00 0.00 3.16
4576 5964 4.261197 GCCCATGAACTTTAATCGCTAAGG 60.261 45.833 0.00 0.00 0.00 2.69
4624 6012 1.603802 CGCTTGGAGCAAAGAAGACAA 59.396 47.619 0.50 0.00 42.58 3.18
4631 6019 3.244596 GGAGCAAAGAAGACAAGGGTAGT 60.245 47.826 0.00 0.00 0.00 2.73
4639 6027 4.409247 AGAAGACAAGGGTAGTTCAACACT 59.591 41.667 0.00 0.00 39.87 3.55
4681 6069 7.243487 GTGAAGATCACAAATTAGCGATTTCA 58.757 34.615 5.65 0.00 46.22 2.69
4690 6079 5.415415 AATTAGCGATTTCACTGAGCATC 57.585 39.130 0.00 0.00 0.00 3.91
4696 6085 4.034394 GCGATTTCACTGAGCATCACATAA 59.966 41.667 0.00 0.00 42.56 1.90
4811 6288 6.758416 TCCATCGATAGCATAGCATTACATTC 59.242 38.462 0.00 0.00 0.00 2.67
4845 6322 6.374053 TGCAATAACAAGCAAGATAAGTAGCA 59.626 34.615 0.00 0.00 37.90 3.49
4848 6325 9.098355 CAATAACAAGCAAGATAAGTAGCAGTA 57.902 33.333 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.472471 TCCCAACGCTTCCAAAGTCT 59.528 50.000 0.00 0.00 0.00 3.24
1 2 0.875059 CTCCCAACGCTTCCAAAGTC 59.125 55.000 0.00 0.00 0.00 3.01
2 3 1.172812 GCTCCCAACGCTTCCAAAGT 61.173 55.000 0.00 0.00 0.00 2.66
3 4 1.581447 GCTCCCAACGCTTCCAAAG 59.419 57.895 0.00 0.00 0.00 2.77
4 5 2.258013 CGCTCCCAACGCTTCCAAA 61.258 57.895 0.00 0.00 0.00 3.28
5 6 2.668212 CGCTCCCAACGCTTCCAA 60.668 61.111 0.00 0.00 0.00 3.53
6 7 4.697756 CCGCTCCCAACGCTTCCA 62.698 66.667 0.00 0.00 0.00 3.53
7 8 4.388499 TCCGCTCCCAACGCTTCC 62.388 66.667 0.00 0.00 0.00 3.46
8 9 2.815647 CTCCGCTCCCAACGCTTC 60.816 66.667 0.00 0.00 0.00 3.86
9 10 4.394712 CCTCCGCTCCCAACGCTT 62.395 66.667 0.00 0.00 0.00 4.68
12 13 4.452733 GTCCCTCCGCTCCCAACG 62.453 72.222 0.00 0.00 0.00 4.10
13 14 3.003763 AGTCCCTCCGCTCCCAAC 61.004 66.667 0.00 0.00 0.00 3.77
14 15 3.003173 CAGTCCCTCCGCTCCCAA 61.003 66.667 0.00 0.00 0.00 4.12
17 18 2.442272 TAGCAGTCCCTCCGCTCC 60.442 66.667 0.00 0.00 37.20 4.70
18 19 1.755008 ACTAGCAGTCCCTCCGCTC 60.755 63.158 0.00 0.00 37.20 5.03
19 20 2.055042 CACTAGCAGTCCCTCCGCT 61.055 63.158 0.00 0.00 39.80 5.52
20 21 2.286127 GACACTAGCAGTCCCTCCGC 62.286 65.000 4.92 0.00 0.00 5.54
21 22 1.810532 GACACTAGCAGTCCCTCCG 59.189 63.158 4.92 0.00 0.00 4.63
27 28 1.248785 TGTCGGGGACACTAGCAGTC 61.249 60.000 7.26 7.26 37.67 3.51
28 29 1.228769 TGTCGGGGACACTAGCAGT 60.229 57.895 0.00 0.00 37.67 4.40
29 30 1.513158 CTGTCGGGGACACTAGCAG 59.487 63.158 0.00 0.00 37.67 4.24
30 31 1.982395 CCTGTCGGGGACACTAGCA 60.982 63.158 0.00 0.00 37.67 3.49
31 32 2.893398 CCTGTCGGGGACACTAGC 59.107 66.667 0.00 0.00 37.67 3.42
32 33 2.893398 GCCTGTCGGGGACACTAG 59.107 66.667 0.00 0.00 37.67 2.57
33 34 3.066190 CGCCTGTCGGGGACACTA 61.066 66.667 0.00 0.00 45.63 2.74
61 62 4.980805 TGGACGCACGCCCTTGTC 62.981 66.667 0.00 0.00 0.00 3.18
62 63 4.988598 CTGGACGCACGCCCTTGT 62.989 66.667 0.00 0.00 0.00 3.16
83 84 3.631049 GAAACAGAAGCGCGCGGAC 62.631 63.158 33.06 20.15 0.00 4.79
84 85 3.411351 GAAACAGAAGCGCGCGGA 61.411 61.111 33.06 0.00 0.00 5.54
85 86 3.711842 TGAAACAGAAGCGCGCGG 61.712 61.111 33.06 16.99 0.00 6.46
86 87 2.497628 GTGAAACAGAAGCGCGCG 60.498 61.111 28.44 28.44 36.32 6.86
87 88 2.127232 GGTGAAACAGAAGCGCGC 60.127 61.111 26.66 26.66 39.98 6.86
88 89 2.556287 GGGTGAAACAGAAGCGCG 59.444 61.111 0.00 0.00 39.98 6.86
89 90 1.452145 TTGGGGTGAAACAGAAGCGC 61.452 55.000 0.00 0.00 39.98 5.92
90 91 1.028905 TTTGGGGTGAAACAGAAGCG 58.971 50.000 0.00 0.00 39.98 4.68
91 92 1.068588 GGTTTGGGGTGAAACAGAAGC 59.931 52.381 0.00 0.00 39.98 3.86
92 93 1.336755 CGGTTTGGGGTGAAACAGAAG 59.663 52.381 0.00 0.00 39.98 2.85
93 94 1.064611 TCGGTTTGGGGTGAAACAGAA 60.065 47.619 0.00 0.00 37.18 3.02
94 95 0.547075 TCGGTTTGGGGTGAAACAGA 59.453 50.000 0.00 0.00 39.98 3.41
95 96 0.951558 CTCGGTTTGGGGTGAAACAG 59.048 55.000 0.00 0.00 39.98 3.16
96 97 1.104577 GCTCGGTTTGGGGTGAAACA 61.105 55.000 0.00 0.00 39.98 2.83
97 98 1.658114 GCTCGGTTTGGGGTGAAAC 59.342 57.895 0.00 0.00 35.45 2.78
98 99 1.894756 CGCTCGGTTTGGGGTGAAA 60.895 57.895 0.00 0.00 0.00 2.69
99 100 2.281208 CGCTCGGTTTGGGGTGAA 60.281 61.111 0.00 0.00 0.00 3.18
102 103 4.572571 TTGCGCTCGGTTTGGGGT 62.573 61.111 9.73 0.00 0.00 4.95
103 104 3.737172 CTTGCGCTCGGTTTGGGG 61.737 66.667 9.73 0.00 0.00 4.96
104 105 2.070654 AAACTTGCGCTCGGTTTGGG 62.071 55.000 19.08 0.36 32.84 4.12
105 106 0.934436 CAAACTTGCGCTCGGTTTGG 60.934 55.000 28.14 17.85 43.19 3.28
106 107 0.028770 TCAAACTTGCGCTCGGTTTG 59.971 50.000 29.03 29.03 46.18 2.93
107 108 0.307760 CTCAAACTTGCGCTCGGTTT 59.692 50.000 9.73 13.79 34.10 3.27
108 109 0.814010 ACTCAAACTTGCGCTCGGTT 60.814 50.000 9.73 8.16 0.00 4.44
109 110 1.222115 GACTCAAACTTGCGCTCGGT 61.222 55.000 9.73 1.34 0.00 4.69
110 111 1.493311 GACTCAAACTTGCGCTCGG 59.507 57.895 9.73 0.61 0.00 4.63
111 112 1.128611 CGACTCAAACTTGCGCTCG 59.871 57.895 9.73 1.60 0.00 5.03
112 113 0.859232 TTCGACTCAAACTTGCGCTC 59.141 50.000 9.73 0.00 0.00 5.03
113 114 1.295792 TTTCGACTCAAACTTGCGCT 58.704 45.000 9.73 0.00 0.00 5.92
114 115 2.099633 TTTTCGACTCAAACTTGCGC 57.900 45.000 0.00 0.00 0.00 6.09
115 116 5.440685 ACTTATTTTCGACTCAAACTTGCG 58.559 37.500 0.00 0.00 0.00 4.85
116 117 5.560378 CGACTTATTTTCGACTCAAACTTGC 59.440 40.000 0.00 0.00 38.85 4.01
117 118 6.873656 TCGACTTATTTTCGACTCAAACTTG 58.126 36.000 0.00 0.00 40.51 3.16
118 119 7.473027 TTCGACTTATTTTCGACTCAAACTT 57.527 32.000 0.00 0.00 44.89 2.66
119 120 7.473027 TTTCGACTTATTTTCGACTCAAACT 57.527 32.000 0.00 0.00 44.89 2.66
120 121 7.149556 CGTTTTCGACTTATTTTCGACTCAAAC 60.150 37.037 9.10 9.10 44.89 2.93
121 122 6.842282 CGTTTTCGACTTATTTTCGACTCAAA 59.158 34.615 0.00 0.00 44.89 2.69
122 123 6.349426 CGTTTTCGACTTATTTTCGACTCAA 58.651 36.000 0.00 0.00 44.89 3.02
123 124 5.107760 CCGTTTTCGACTTATTTTCGACTCA 60.108 40.000 0.00 0.00 44.89 3.41
124 125 5.117592 TCCGTTTTCGACTTATTTTCGACTC 59.882 40.000 0.00 0.00 44.89 3.36
125 126 4.984161 TCCGTTTTCGACTTATTTTCGACT 59.016 37.500 0.00 0.00 44.89 4.18
126 127 5.254669 TCCGTTTTCGACTTATTTTCGAC 57.745 39.130 0.00 0.00 44.89 4.20
141 142 9.339958 GACAAATGTCTGGATTCCTTCCGTTTT 62.340 40.741 3.95 0.00 40.33 2.43
142 143 7.959066 GACAAATGTCTGGATTCCTTCCGTTT 61.959 42.308 3.95 3.00 40.33 3.60
143 144 6.548030 GACAAATGTCTGGATTCCTTCCGTT 61.548 44.000 3.95 0.00 40.33 4.44
144 145 5.103123 GACAAATGTCTGGATTCCTTCCGT 61.103 45.833 3.95 0.00 40.33 4.69
145 146 3.375299 GACAAATGTCTGGATTCCTTCCG 59.625 47.826 3.95 0.00 40.33 4.30
146 147 3.696548 GGACAAATGTCTGGATTCCTTCC 59.303 47.826 12.87 0.00 44.20 3.46
147 148 3.375299 CGGACAAATGTCTGGATTCCTTC 59.625 47.826 13.46 0.00 45.32 3.46
148 149 3.347216 CGGACAAATGTCTGGATTCCTT 58.653 45.455 13.46 0.00 45.32 3.36
149 150 2.991250 CGGACAAATGTCTGGATTCCT 58.009 47.619 13.46 0.00 45.32 3.36
157 158 3.139077 GACCTCAAACGGACAAATGTCT 58.861 45.455 12.87 0.00 44.20 3.41
158 159 2.875933 TGACCTCAAACGGACAAATGTC 59.124 45.455 4.96 4.96 44.04 3.06
159 160 2.616842 GTGACCTCAAACGGACAAATGT 59.383 45.455 0.00 0.00 30.89 2.71
160 161 2.349438 CGTGACCTCAAACGGACAAATG 60.349 50.000 0.00 0.00 36.17 2.32
161 162 1.871039 CGTGACCTCAAACGGACAAAT 59.129 47.619 0.00 0.00 36.17 2.32
162 163 1.292061 CGTGACCTCAAACGGACAAA 58.708 50.000 0.00 0.00 36.17 2.83
163 164 1.155424 GCGTGACCTCAAACGGACAA 61.155 55.000 0.00 0.00 40.12 3.18
164 165 1.593209 GCGTGACCTCAAACGGACA 60.593 57.895 0.00 0.00 40.12 4.02
165 166 2.654912 CGCGTGACCTCAAACGGAC 61.655 63.158 0.00 0.00 40.12 4.79
166 167 2.355363 CGCGTGACCTCAAACGGA 60.355 61.111 0.00 0.00 40.12 4.69
167 168 4.072088 GCGCGTGACCTCAAACGG 62.072 66.667 8.43 0.00 40.12 4.44
168 169 3.036084 AGCGCGTGACCTCAAACG 61.036 61.111 8.43 0.00 42.61 3.60
169 170 2.551270 CAGCGCGTGACCTCAAAC 59.449 61.111 8.43 0.00 0.00 2.93
170 171 2.664851 CCAGCGCGTGACCTCAAA 60.665 61.111 8.43 0.00 0.00 2.69
171 172 4.680237 CCCAGCGCGTGACCTCAA 62.680 66.667 8.43 0.00 0.00 3.02
182 183 3.272334 GAATAGTGCGGCCCAGCG 61.272 66.667 0.00 0.00 40.67 5.18
183 184 3.272334 CGAATAGTGCGGCCCAGC 61.272 66.667 0.00 0.00 37.71 4.85
184 185 1.883084 GACGAATAGTGCGGCCCAG 60.883 63.158 0.00 0.00 0.00 4.45
185 186 2.185867 GACGAATAGTGCGGCCCA 59.814 61.111 0.00 0.00 0.00 5.36
186 187 1.883084 CAGACGAATAGTGCGGCCC 60.883 63.158 0.00 0.00 37.53 5.80
187 188 0.739813 AACAGACGAATAGTGCGGCC 60.740 55.000 0.00 0.00 37.53 6.13
188 189 1.076332 AAACAGACGAATAGTGCGGC 58.924 50.000 0.00 0.00 36.94 6.53
189 190 3.061697 GGTAAAACAGACGAATAGTGCGG 59.938 47.826 0.00 0.00 0.00 5.69
190 191 3.924686 AGGTAAAACAGACGAATAGTGCG 59.075 43.478 0.00 0.00 0.00 5.34
191 192 5.407387 TGAAGGTAAAACAGACGAATAGTGC 59.593 40.000 0.00 0.00 0.00 4.40
192 193 7.416154 TTGAAGGTAAAACAGACGAATAGTG 57.584 36.000 0.00 0.00 0.00 2.74
193 194 7.306983 CGTTTGAAGGTAAAACAGACGAATAGT 60.307 37.037 0.00 0.00 41.99 2.12
194 195 7.007697 CGTTTGAAGGTAAAACAGACGAATAG 58.992 38.462 0.00 0.00 41.99 1.73
195 196 6.073657 CCGTTTGAAGGTAAAACAGACGAATA 60.074 38.462 0.00 0.00 41.99 1.75
196 197 5.277634 CCGTTTGAAGGTAAAACAGACGAAT 60.278 40.000 0.00 0.00 41.99 3.34
197 198 4.034279 CCGTTTGAAGGTAAAACAGACGAA 59.966 41.667 0.00 0.00 41.99 3.85
198 199 3.556775 CCGTTTGAAGGTAAAACAGACGA 59.443 43.478 0.00 0.00 41.99 4.20
199 200 3.556775 TCCGTTTGAAGGTAAAACAGACG 59.443 43.478 0.00 0.00 40.19 4.18
200 201 4.551410 CGTCCGTTTGAAGGTAAAACAGAC 60.551 45.833 5.66 5.66 39.73 3.51
201 202 3.556775 CGTCCGTTTGAAGGTAAAACAGA 59.443 43.478 0.00 0.00 37.37 3.41
202 203 3.310501 ACGTCCGTTTGAAGGTAAAACAG 59.689 43.478 0.00 0.00 37.37 3.16
203 204 3.063725 CACGTCCGTTTGAAGGTAAAACA 59.936 43.478 0.00 0.00 37.37 2.83
204 205 3.610495 CACGTCCGTTTGAAGGTAAAAC 58.390 45.455 0.00 0.00 34.79 2.43
205 206 2.031930 GCACGTCCGTTTGAAGGTAAAA 59.968 45.455 0.00 0.00 0.00 1.52
206 207 1.598601 GCACGTCCGTTTGAAGGTAAA 59.401 47.619 0.00 0.00 0.00 2.01
207 208 1.219646 GCACGTCCGTTTGAAGGTAA 58.780 50.000 0.00 0.00 0.00 2.85
208 209 0.940519 CGCACGTCCGTTTGAAGGTA 60.941 55.000 0.00 0.00 0.00 3.08
209 210 2.241880 CGCACGTCCGTTTGAAGGT 61.242 57.895 0.00 0.00 0.00 3.50
210 211 2.549282 CGCACGTCCGTTTGAAGG 59.451 61.111 0.00 0.00 0.00 3.46
211 212 2.127758 GCGCACGTCCGTTTGAAG 60.128 61.111 0.30 0.00 0.00 3.02
212 213 3.990806 CGCGCACGTCCGTTTGAA 61.991 61.111 8.75 0.00 33.53 2.69
220 221 4.796231 ATCCTGTCCGCGCACGTC 62.796 66.667 8.75 0.00 37.70 4.34
226 227 4.873129 CGACCCATCCTGTCCGCG 62.873 72.222 0.00 0.00 0.00 6.46
228 229 4.873129 CGCGACCCATCCTGTCCG 62.873 72.222 0.00 0.00 0.00 4.79
243 244 3.642778 TAGACCAACTCCAGCGCGC 62.643 63.158 26.66 26.66 0.00 6.86
244 245 0.460284 ATTAGACCAACTCCAGCGCG 60.460 55.000 0.00 0.00 0.00 6.86
245 246 1.009829 CATTAGACCAACTCCAGCGC 58.990 55.000 0.00 0.00 0.00 5.92
246 247 2.386661 ACATTAGACCAACTCCAGCG 57.613 50.000 0.00 0.00 0.00 5.18
247 248 3.366374 GCAAACATTAGACCAACTCCAGC 60.366 47.826 0.00 0.00 0.00 4.85
248 249 3.820467 TGCAAACATTAGACCAACTCCAG 59.180 43.478 0.00 0.00 0.00 3.86
249 250 3.568007 GTGCAAACATTAGACCAACTCCA 59.432 43.478 0.00 0.00 0.00 3.86
250 251 3.057526 GGTGCAAACATTAGACCAACTCC 60.058 47.826 0.00 0.00 0.00 3.85
251 252 3.568007 TGGTGCAAACATTAGACCAACTC 59.432 43.478 0.00 0.00 33.72 3.01
252 253 3.317993 GTGGTGCAAACATTAGACCAACT 59.682 43.478 0.00 0.00 38.41 3.16
253 254 3.638484 GTGGTGCAAACATTAGACCAAC 58.362 45.455 0.00 0.00 38.41 3.77
254 255 2.292016 CGTGGTGCAAACATTAGACCAA 59.708 45.455 0.00 0.00 38.41 3.67
255 256 1.876799 CGTGGTGCAAACATTAGACCA 59.123 47.619 0.00 0.00 34.26 4.02
256 257 1.877443 ACGTGGTGCAAACATTAGACC 59.123 47.619 0.00 0.00 0.00 3.85
257 258 4.201783 GGATACGTGGTGCAAACATTAGAC 60.202 45.833 0.00 0.00 0.00 2.59
258 259 3.936453 GGATACGTGGTGCAAACATTAGA 59.064 43.478 0.00 0.00 0.00 2.10
259 260 3.938963 AGGATACGTGGTGCAAACATTAG 59.061 43.478 0.00 0.00 46.39 1.73
260 261 3.687212 CAGGATACGTGGTGCAAACATTA 59.313 43.478 0.00 0.00 46.39 1.90
261 262 2.487762 CAGGATACGTGGTGCAAACATT 59.512 45.455 0.00 0.00 46.39 2.71
262 263 2.083774 CAGGATACGTGGTGCAAACAT 58.916 47.619 0.00 0.00 46.39 2.71
263 264 1.518325 CAGGATACGTGGTGCAAACA 58.482 50.000 0.00 0.00 46.39 2.83
264 265 0.168128 GCAGGATACGTGGTGCAAAC 59.832 55.000 0.00 0.00 46.39 2.93
265 266 1.295357 CGCAGGATACGTGGTGCAAA 61.295 55.000 0.00 0.00 46.39 3.68
266 267 1.739929 CGCAGGATACGTGGTGCAA 60.740 57.895 0.00 0.00 46.39 4.08
267 268 2.125713 CGCAGGATACGTGGTGCA 60.126 61.111 0.00 0.00 46.39 4.57
268 269 2.165301 GTCGCAGGATACGTGGTGC 61.165 63.158 0.00 0.39 46.39 5.01
269 270 0.525668 GAGTCGCAGGATACGTGGTG 60.526 60.000 0.00 0.00 46.39 4.17
270 271 1.664321 GGAGTCGCAGGATACGTGGT 61.664 60.000 0.00 0.00 46.39 4.16
271 272 1.065928 GGAGTCGCAGGATACGTGG 59.934 63.158 0.00 0.00 46.39 4.94
272 273 1.298413 CGGAGTCGCAGGATACGTG 60.298 63.158 0.00 0.00 46.39 4.49
273 274 1.437772 CTCGGAGTCGCAGGATACGT 61.438 60.000 0.00 0.00 37.86 3.57
274 275 1.280142 CTCGGAGTCGCAGGATACG 59.720 63.158 0.00 0.00 37.86 3.06
275 276 1.655329 CCTCGGAGTCGCAGGATAC 59.345 63.158 4.02 0.00 36.49 2.24
276 277 2.194212 GCCTCGGAGTCGCAGGATA 61.194 63.158 9.69 0.00 36.49 2.59
277 278 3.532155 GCCTCGGAGTCGCAGGAT 61.532 66.667 9.69 0.00 36.49 3.24
279 280 4.504916 CTGCCTCGGAGTCGCAGG 62.505 72.222 21.50 5.87 43.30 4.85
280 281 4.504916 CCTGCCTCGGAGTCGCAG 62.505 72.222 22.00 22.00 45.33 5.18
284 285 3.708220 CTTCGCCTGCCTCGGAGTC 62.708 68.421 4.02 0.00 0.00 3.36
285 286 3.764466 CTTCGCCTGCCTCGGAGT 61.764 66.667 4.02 0.00 0.00 3.85
288 289 4.845580 ATGCTTCGCCTGCCTCGG 62.846 66.667 0.00 0.00 0.00 4.63
289 290 3.570638 CATGCTTCGCCTGCCTCG 61.571 66.667 0.00 0.00 0.00 4.63
290 291 2.437359 ACATGCTTCGCCTGCCTC 60.437 61.111 0.00 0.00 0.00 4.70
291 292 2.437359 GACATGCTTCGCCTGCCT 60.437 61.111 0.00 0.00 0.00 4.75
292 293 3.869272 CGACATGCTTCGCCTGCC 61.869 66.667 0.00 0.00 31.03 4.85
293 294 3.869272 CCGACATGCTTCGCCTGC 61.869 66.667 0.38 0.00 37.70 4.85
294 295 3.869272 GCCGACATGCTTCGCCTG 61.869 66.667 0.38 0.00 37.70 4.85
295 296 4.393155 TGCCGACATGCTTCGCCT 62.393 61.111 0.38 0.00 37.70 5.52
296 297 3.869272 CTGCCGACATGCTTCGCC 61.869 66.667 0.38 0.00 37.70 5.54
297 298 3.869272 CCTGCCGACATGCTTCGC 61.869 66.667 0.38 0.00 37.70 4.70
298 299 3.869272 GCCTGCCGACATGCTTCG 61.869 66.667 0.00 0.00 34.87 3.79
299 300 3.869272 CGCCTGCCGACATGCTTC 61.869 66.667 0.00 0.00 40.02 3.86
300 301 4.393155 TCGCCTGCCGACATGCTT 62.393 61.111 0.00 0.00 41.89 3.91
307 308 3.755628 GTAGTGGTCGCCTGCCGA 61.756 66.667 0.00 0.00 45.15 5.54
336 337 1.149627 CCCTCCGTTTTGGGTCACA 59.850 57.895 0.00 0.00 38.65 3.58
404 405 2.064762 GCACATCACGCATATCTCCTC 58.935 52.381 0.00 0.00 0.00 3.71
435 436 4.214327 CGAAGCGAGAGGAGGGGC 62.214 72.222 0.00 0.00 0.00 5.80
439 440 0.457851 ATGGAACGAAGCGAGAGGAG 59.542 55.000 0.00 0.00 0.00 3.69
482 483 1.215014 TATGCGACTATGCGTGCTGC 61.215 55.000 0.00 0.00 46.70 5.25
484 485 0.934901 CGTATGCGACTATGCGTGCT 60.935 55.000 0.00 0.00 41.33 4.40
494 495 2.108278 ATTAGGGGGCCGTATGCGAC 62.108 60.000 4.21 0.00 42.61 5.19
495 496 1.823169 GATTAGGGGGCCGTATGCGA 61.823 60.000 4.21 0.00 42.61 5.10
496 497 1.375523 GATTAGGGGGCCGTATGCG 60.376 63.158 0.00 0.00 42.61 4.73
497 498 1.002502 GGATTAGGGGGCCGTATGC 60.003 63.158 0.00 0.00 40.16 3.14
498 499 0.991920 ATGGATTAGGGGGCCGTATG 59.008 55.000 0.00 0.00 0.00 2.39
499 500 1.286248 GATGGATTAGGGGGCCGTAT 58.714 55.000 0.00 0.00 0.00 3.06
500 501 0.838987 GGATGGATTAGGGGGCCGTA 60.839 60.000 0.00 0.00 0.00 4.02
501 502 2.154074 GGATGGATTAGGGGGCCGT 61.154 63.158 0.00 0.00 0.00 5.68
502 503 2.757077 GGATGGATTAGGGGGCCG 59.243 66.667 0.00 0.00 0.00 6.13
503 504 1.208165 ATCGGATGGATTAGGGGGCC 61.208 60.000 0.00 0.00 28.32 5.80
504 505 0.698818 AATCGGATGGATTAGGGGGC 59.301 55.000 0.00 0.00 43.54 5.80
505 506 3.844211 TCTTAATCGGATGGATTAGGGGG 59.156 47.826 0.00 0.00 45.72 5.40
519 520 6.686130 ACTAACCGCGAAATATCTTAATCG 57.314 37.500 8.23 0.00 38.28 3.34
562 563 4.767255 CGGGTCCTGCACTCCTGC 62.767 72.222 0.00 0.00 44.52 4.85
563 564 4.767255 GCGGGTCCTGCACTCCTG 62.767 72.222 18.40 0.00 0.00 3.86
565 566 3.842925 TTTGCGGGTCCTGCACTCC 62.843 63.158 25.55 0.00 43.10 3.85
566 567 2.281484 TTTGCGGGTCCTGCACTC 60.281 61.111 25.55 0.00 43.10 3.51
567 568 2.281761 CTTTGCGGGTCCTGCACT 60.282 61.111 25.55 0.00 43.10 4.40
568 569 4.043200 GCTTTGCGGGTCCTGCAC 62.043 66.667 25.55 10.44 43.10 4.57
605 606 0.732880 ATCTACAGTGCGTGCGTGTC 60.733 55.000 3.24 0.00 0.00 3.67
607 608 1.840181 ATATCTACAGTGCGTGCGTG 58.160 50.000 0.00 0.00 0.00 5.34
608 609 2.579207 AATATCTACAGTGCGTGCGT 57.421 45.000 0.00 0.00 0.00 5.24
610 611 3.871594 AGGAAAATATCTACAGTGCGTGC 59.128 43.478 0.00 0.00 0.00 5.34
611 612 4.508124 GGAGGAAAATATCTACAGTGCGTG 59.492 45.833 0.00 0.00 0.00 5.34
612 613 4.694339 GGAGGAAAATATCTACAGTGCGT 58.306 43.478 0.00 0.00 0.00 5.24
613 614 3.736252 CGGAGGAAAATATCTACAGTGCG 59.264 47.826 0.00 0.00 0.00 5.34
841 851 1.744014 GCCGGCGGGTTAGAATAGA 59.256 57.895 29.48 0.00 34.97 1.98
903 913 4.189580 CACTATGGGGTGGGGGCG 62.190 72.222 0.00 0.00 33.95 6.13
904 914 1.869824 TTTCACTATGGGGTGGGGGC 61.870 60.000 0.00 0.00 37.75 5.80
999 1011 4.704540 CCATTGTCTGGTGGTATGCTAAAA 59.295 41.667 0.00 0.00 40.49 1.52
1118 1130 3.474570 GAGCTCCTGTGGCCGGAT 61.475 66.667 5.05 0.00 0.00 4.18
1160 1172 0.532640 CATGTATGCGGCAGCTGGTA 60.533 55.000 17.12 0.00 45.42 3.25
1161 1173 1.820906 CATGTATGCGGCAGCTGGT 60.821 57.895 17.12 0.00 45.42 4.00
1167 1180 1.447217 CTCCTCCATGTATGCGGCA 59.553 57.895 4.58 4.58 0.00 5.69
1189 1202 1.079819 CTGTTGGATCTGCGGACGT 60.080 57.895 0.00 0.00 0.00 4.34
1223 1239 1.379176 CCAGAGGAGGAGCAGACGA 60.379 63.158 0.00 0.00 0.00 4.20
1229 1245 4.527583 CGCAGCCAGAGGAGGAGC 62.528 72.222 0.00 0.00 0.00 4.70
1275 1291 2.354259 CAATCAGCAGAGACTTCCCAC 58.646 52.381 0.00 0.00 0.00 4.61
1395 1423 2.266055 CTCACCTTGCTCCGGTCC 59.734 66.667 0.00 0.00 30.82 4.46
1491 1519 6.719370 TGATTAACAACAAGCCTAAGGTGAAT 59.281 34.615 0.00 0.00 0.00 2.57
1509 1537 4.143263 GCAAGCAGCAAACACATGATTAAC 60.143 41.667 0.00 0.00 44.79 2.01
1567 1597 5.587844 AGACATCATTAGAAGACAACATGGC 59.412 40.000 0.00 0.00 0.00 4.40
1572 1602 6.312426 CACCAGAGACATCATTAGAAGACAAC 59.688 42.308 0.00 0.00 0.00 3.32
1575 1605 4.808364 GCACCAGAGACATCATTAGAAGAC 59.192 45.833 0.00 0.00 0.00 3.01
1626 1662 2.032681 GGAGACTTGGCGCAGGTT 59.967 61.111 10.83 0.00 0.00 3.50
1660 1696 2.437359 GCCCTCGCAGTTGAGCAT 60.437 61.111 0.00 0.00 34.56 3.79
1797 1833 3.456277 GGACAGAACTATGGGAACTGGAT 59.544 47.826 0.00 0.00 33.57 3.41
1798 1834 2.838202 GGACAGAACTATGGGAACTGGA 59.162 50.000 0.00 0.00 33.57 3.86
1843 1879 6.034577 CGTAATTGCATCCGTACGATATCATT 59.965 38.462 18.76 9.82 41.34 2.57
2043 2080 7.448469 AGACCAGCTTAGAGCATTCTTTTAAAA 59.552 33.333 0.00 0.00 45.56 1.52
2044 2081 6.942576 AGACCAGCTTAGAGCATTCTTTTAAA 59.057 34.615 2.47 0.00 45.56 1.52
2075 2112 4.629634 TCATAAACAGTACAGCAATGACCG 59.370 41.667 0.00 0.00 0.00 4.79
2106 2143 6.256321 GCTGCCAACACCAATATTCAATTTAG 59.744 38.462 0.00 0.00 0.00 1.85
2344 2381 8.791675 AGAGAAAGAAAGAGAAAACCAATCATC 58.208 33.333 0.00 0.00 0.00 2.92
2376 2413 4.091365 GCGGCAACATAAATTTTGGAAGAC 59.909 41.667 0.00 0.00 0.00 3.01
2533 2571 4.359706 CGCAATGCTAGGTAAATTTTCCC 58.640 43.478 10.00 4.57 0.00 3.97
2604 2642 6.024552 ACAAAACAAAAACAGCTGAAGAGA 57.975 33.333 23.35 0.00 0.00 3.10
2638 2676 7.278461 TGAGAACTATGAATGAGTAGGTAGC 57.722 40.000 0.00 0.00 0.00 3.58
2917 2955 2.223135 GCATAGGCGTCTCAAAAGCTTC 60.223 50.000 0.00 0.00 32.38 3.86
2952 2990 4.275936 TGCAAGTTAGAGGAAGAAAAGCAC 59.724 41.667 0.00 0.00 0.00 4.40
3129 3167 0.743097 GATGGAGCATTCTTGGTGGC 59.257 55.000 0.00 0.00 32.62 5.01
3137 3175 9.403110 GATAAACATTGTATTGATGGAGCATTC 57.597 33.333 0.00 0.00 0.00 2.67
3245 3283 0.244450 TACCGACGACCACACATTCC 59.756 55.000 0.00 0.00 0.00 3.01
3537 3575 9.896645 CCACATATAATATGACCTTTCAGCTAT 57.103 33.333 0.00 0.00 34.35 2.97
3551 3589 5.237815 CGCACACCACTCCACATATAATAT 58.762 41.667 0.00 0.00 0.00 1.28
3565 3603 1.064505 CAATGATCATCCGCACACCAC 59.935 52.381 9.06 0.00 0.00 4.16
3627 3665 5.388061 GCAAAATGATGCATTGCTATTAGCG 60.388 40.000 13.41 0.00 44.48 4.26
3785 3826 2.234908 AGCGCAGAGACAAAGAGGTTAT 59.765 45.455 11.47 0.00 0.00 1.89
3787 3828 0.394565 AGCGCAGAGACAAAGAGGTT 59.605 50.000 11.47 0.00 0.00 3.50
3922 3977 2.923605 GCACACAGGCAATAGCAAACAG 60.924 50.000 0.00 0.00 44.61 3.16
3982 4037 1.448540 CGACTGGCAAGGTAGCAGG 60.449 63.158 0.00 0.00 35.83 4.85
4009 4064 1.063114 ACGGAGGGAGTACCAGCTAAT 60.063 52.381 0.00 0.00 43.89 1.73
4011 4066 0.333993 AACGGAGGGAGTACCAGCTA 59.666 55.000 0.00 0.00 43.89 3.32
4030 4085 5.759506 TTTTCTGCAACGAGTAATTTGGA 57.240 34.783 0.00 0.00 0.00 3.53
4032 4087 6.148948 TCCATTTTCTGCAACGAGTAATTTG 58.851 36.000 0.00 0.00 0.00 2.32
4036 4091 4.759693 ACATCCATTTTCTGCAACGAGTAA 59.240 37.500 0.00 0.00 0.00 2.24
4038 4093 3.149196 ACATCCATTTTCTGCAACGAGT 58.851 40.909 0.00 0.00 0.00 4.18
4041 4096 5.490139 AGATACATCCATTTTCTGCAACG 57.510 39.130 0.00 0.00 0.00 4.10
4045 4100 9.547753 TTAGTTCTAGATACATCCATTTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
4051 4106 9.851686 TGCATTTTAGTTCTAGATACATCCATT 57.148 29.630 0.00 0.00 0.00 3.16
4074 4138 6.532657 CGCATGTATGAATGTATCTAGATGCA 59.467 38.462 23.38 23.38 37.77 3.96
4075 4139 6.753744 TCGCATGTATGAATGTATCTAGATGC 59.246 38.462 15.79 14.54 36.37 3.91
4076 4140 7.756722 TGTCGCATGTATGAATGTATCTAGATG 59.243 37.037 15.79 0.00 0.00 2.90
4077 4141 7.830739 TGTCGCATGTATGAATGTATCTAGAT 58.169 34.615 10.73 10.73 0.00 1.98
4078 4142 7.214467 TGTCGCATGTATGAATGTATCTAGA 57.786 36.000 0.00 0.00 0.00 2.43
4081 4145 6.283694 ACTTGTCGCATGTATGAATGTATCT 58.716 36.000 0.00 0.00 0.00 1.98
4089 4153 5.877564 TCCAAATTACTTGTCGCATGTATGA 59.122 36.000 0.00 0.00 32.65 2.15
4094 4158 6.585702 TGAATTTCCAAATTACTTGTCGCATG 59.414 34.615 0.00 0.00 38.64 4.06
4095 4159 6.686630 TGAATTTCCAAATTACTTGTCGCAT 58.313 32.000 0.00 0.00 38.64 4.73
4097 4161 7.753132 TGTATGAATTTCCAAATTACTTGTCGC 59.247 33.333 0.00 0.00 38.64 5.19
4098 4162 9.787532 ATGTATGAATTTCCAAATTACTTGTCG 57.212 29.630 0.00 0.00 38.64 4.35
4100 4164 9.369904 GCATGTATGAATTTCCAAATTACTTGT 57.630 29.630 0.00 0.00 38.64 3.16
4101 4165 8.533965 CGCATGTATGAATTTCCAAATTACTTG 58.466 33.333 0.00 3.54 38.64 3.16
4104 4168 8.801715 ATCGCATGTATGAATTTCCAAATTAC 57.198 30.769 0.00 0.00 38.64 1.89
4106 4170 9.467258 CTTATCGCATGTATGAATTTCCAAATT 57.533 29.630 0.00 0.00 41.06 1.82
4108 4172 7.995289 ACTTATCGCATGTATGAATTTCCAAA 58.005 30.769 0.00 0.00 0.00 3.28
4109 4173 7.566760 ACTTATCGCATGTATGAATTTCCAA 57.433 32.000 0.00 0.00 0.00 3.53
4110 4174 8.669946 TTACTTATCGCATGTATGAATTTCCA 57.330 30.769 0.00 0.00 0.00 3.53
4114 4178 9.897744 CCAAATTACTTATCGCATGTATGAATT 57.102 29.630 0.00 0.00 0.00 2.17
4115 4179 9.283768 TCCAAATTACTTATCGCATGTATGAAT 57.716 29.630 0.00 0.00 0.00 2.57
4116 4180 8.669946 TCCAAATTACTTATCGCATGTATGAA 57.330 30.769 0.00 0.00 0.00 2.57
4117 4181 8.669946 TTCCAAATTACTTATCGCATGTATGA 57.330 30.769 0.00 0.00 0.00 2.15
4118 4182 9.897744 ATTTCCAAATTACTTATCGCATGTATG 57.102 29.630 0.00 0.00 0.00 2.39
4120 4184 9.944663 GAATTTCCAAATTACTTATCGCATGTA 57.055 29.630 0.00 0.00 38.64 2.29
4121 4185 8.465999 TGAATTTCCAAATTACTTATCGCATGT 58.534 29.630 0.00 0.00 38.64 3.21
4122 4186 8.854979 TGAATTTCCAAATTACTTATCGCATG 57.145 30.769 0.00 0.00 38.64 4.06
4124 4188 9.944663 GTATGAATTTCCAAATTACTTATCGCA 57.055 29.630 0.00 0.00 38.64 5.10
4125 4189 9.944663 TGTATGAATTTCCAAATTACTTATCGC 57.055 29.630 0.00 0.00 38.64 4.58
4129 4193 9.729023 CGCATGTATGAATTTCCAAATTACTTA 57.271 29.630 0.00 0.00 38.64 2.24
4130 4194 8.465999 TCGCATGTATGAATTTCCAAATTACTT 58.534 29.630 0.00 0.00 38.64 2.24
4131 4195 7.915397 GTCGCATGTATGAATTTCCAAATTACT 59.085 33.333 0.00 0.00 38.64 2.24
4132 4196 7.700234 TGTCGCATGTATGAATTTCCAAATTAC 59.300 33.333 0.00 0.00 38.64 1.89
4133 4197 7.766283 TGTCGCATGTATGAATTTCCAAATTA 58.234 30.769 0.00 0.00 38.64 1.40
4134 4198 6.629128 TGTCGCATGTATGAATTTCCAAATT 58.371 32.000 0.00 0.00 41.06 1.82
4135 4199 6.206395 TGTCGCATGTATGAATTTCCAAAT 57.794 33.333 0.00 0.00 0.00 2.32
4136 4200 5.635417 TGTCGCATGTATGAATTTCCAAA 57.365 34.783 0.00 0.00 0.00 3.28
4137 4201 5.182950 ACTTGTCGCATGTATGAATTTCCAA 59.817 36.000 0.00 0.00 0.00 3.53
4138 4202 4.699735 ACTTGTCGCATGTATGAATTTCCA 59.300 37.500 0.00 0.00 0.00 3.53
4139 4203 5.235305 ACTTGTCGCATGTATGAATTTCC 57.765 39.130 0.00 0.00 0.00 3.13
4140 4204 8.841444 AATTACTTGTCGCATGTATGAATTTC 57.159 30.769 0.00 0.00 0.00 2.17
4141 4205 9.075519 CAAATTACTTGTCGCATGTATGAATTT 57.924 29.630 0.00 8.17 0.00 1.82
4142 4206 7.701924 CCAAATTACTTGTCGCATGTATGAATT 59.298 33.333 0.00 0.00 32.65 2.17
4143 4207 7.066887 TCCAAATTACTTGTCGCATGTATGAAT 59.933 33.333 0.00 0.00 32.65 2.57
4144 4208 6.372937 TCCAAATTACTTGTCGCATGTATGAA 59.627 34.615 0.00 0.00 32.65 2.57
4145 4209 5.877564 TCCAAATTACTTGTCGCATGTATGA 59.122 36.000 0.00 0.00 32.65 2.15
4146 4210 6.117911 TCCAAATTACTTGTCGCATGTATG 57.882 37.500 0.00 0.00 32.65 2.39
4147 4211 6.551736 GTTCCAAATTACTTGTCGCATGTAT 58.448 36.000 0.00 0.00 32.65 2.29
4148 4212 5.390040 CGTTCCAAATTACTTGTCGCATGTA 60.390 40.000 0.00 2.87 32.65 2.29
4149 4213 4.612712 CGTTCCAAATTACTTGTCGCATGT 60.613 41.667 0.00 4.39 32.65 3.21
4150 4214 3.845775 CGTTCCAAATTACTTGTCGCATG 59.154 43.478 0.00 0.00 32.65 4.06
4151 4215 3.119990 CCGTTCCAAATTACTTGTCGCAT 60.120 43.478 0.00 0.00 32.65 4.73
4152 4216 2.224549 CCGTTCCAAATTACTTGTCGCA 59.775 45.455 0.00 0.00 32.65 5.10
4153 4217 2.481185 TCCGTTCCAAATTACTTGTCGC 59.519 45.455 0.00 0.00 32.65 5.19
4154 4218 3.124636 CCTCCGTTCCAAATTACTTGTCG 59.875 47.826 0.00 0.00 32.65 4.35
4157 4221 3.681593 TCCCTCCGTTCCAAATTACTTG 58.318 45.455 0.00 0.00 34.52 3.16
4163 4227 4.966805 TCTAATACTCCCTCCGTTCCAAAT 59.033 41.667 0.00 0.00 0.00 2.32
4169 4233 4.543689 TCATGTCTAATACTCCCTCCGTT 58.456 43.478 0.00 0.00 0.00 4.44
4185 4249 3.957671 ATCATGATGTGCGTTCATGTC 57.042 42.857 7.59 0.00 46.78 3.06
4194 4258 6.381481 TGTTAATGAGGAATCATGATGTGC 57.619 37.500 9.46 5.23 0.00 4.57
4235 4299 9.947669 GAACTTATTACGTATGAGCTAGAGAAA 57.052 33.333 0.00 0.00 0.00 2.52
4250 4355 5.640357 TGCTAACCCAGTTGAACTTATTACG 59.360 40.000 0.00 0.00 0.00 3.18
4254 4359 4.399303 GCATGCTAACCCAGTTGAACTTAT 59.601 41.667 11.37 0.00 0.00 1.73
4370 4477 6.314896 TGACAAACCAATGGCAAAGTAAAAAG 59.685 34.615 0.00 0.00 34.74 2.27
4380 4487 4.774124 TGAAATTTGACAAACCAATGGCA 58.226 34.783 1.94 0.00 36.26 4.92
4390 4497 8.768957 TGATTGTTTGTCTTGAAATTTGACAA 57.231 26.923 15.03 15.03 45.31 3.18
4391 4498 8.945481 ATGATTGTTTGTCTTGAAATTTGACA 57.055 26.923 0.00 0.11 38.71 3.58
4392 4499 9.252962 AGATGATTGTTTGTCTTGAAATTTGAC 57.747 29.630 0.00 0.00 0.00 3.18
4393 4500 9.820725 AAGATGATTGTTTGTCTTGAAATTTGA 57.179 25.926 0.00 0.00 30.27 2.69
4396 4503 9.820725 TCAAAGATGATTGTTTGTCTTGAAATT 57.179 25.926 0.00 0.00 37.38 1.82
4403 5762 8.034215 TGTTTGTTCAAAGATGATTGTTTGTCT 58.966 29.630 0.00 0.00 37.38 3.41
4434 5793 6.710295 TCAAATCTGAAACTTGCTAGCTGTAA 59.290 34.615 17.23 0.60 0.00 2.41
4440 5799 6.205464 TGGAGTTCAAATCTGAAACTTGCTAG 59.795 38.462 0.00 0.00 43.18 3.42
4443 5802 5.186996 TGGAGTTCAAATCTGAAACTTGC 57.813 39.130 0.00 0.00 43.18 4.01
4472 5831 4.273480 CCAGTTTTCTCGTTCACATCTTGT 59.727 41.667 0.00 0.00 0.00 3.16
4477 5836 3.804036 TGTCCAGTTTTCTCGTTCACAT 58.196 40.909 0.00 0.00 0.00 3.21
4536 5924 3.044894 TGGGCAGGTGGAATTTTTCTTT 58.955 40.909 0.00 0.00 0.00 2.52
4537 5925 2.688477 TGGGCAGGTGGAATTTTTCTT 58.312 42.857 0.00 0.00 0.00 2.52
4539 5927 2.566724 TCATGGGCAGGTGGAATTTTTC 59.433 45.455 0.00 0.00 0.00 2.29
4545 5933 0.482446 AAGTTCATGGGCAGGTGGAA 59.518 50.000 0.00 0.00 0.00 3.53
4589 5977 2.815211 GCGATCAGCTGCCGTTGA 60.815 61.111 22.73 0.00 44.04 3.18
4624 6012 5.337652 GCTTCTGATAGTGTTGAACTACCCT 60.338 44.000 0.00 0.00 44.20 4.34
4631 6019 4.686091 CGAACAGCTTCTGATAGTGTTGAA 59.314 41.667 0.29 0.00 35.18 2.69
4639 6027 3.934457 TCACACGAACAGCTTCTGATA 57.066 42.857 0.29 0.00 35.18 2.15
4681 6069 4.127907 CTGCTGATTATGTGATGCTCAGT 58.872 43.478 0.00 0.00 36.55 3.41
4696 6085 7.344913 AGAGGATTTCTTGTTATTCTGCTGAT 58.655 34.615 0.00 0.00 29.61 2.90
4741 6136 6.368791 GTGCTCACTGTGTGACTAAATCATTA 59.631 38.462 13.56 0.00 40.28 1.90
4760 6236 6.072342 TCGTACTCTTTTGTACTATGTGCTCA 60.072 38.462 0.00 0.00 40.25 4.26
4811 6288 4.002982 TGCTTGTTATTGCAGTACCTCTG 58.997 43.478 0.00 0.00 46.12 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.