Multiple sequence alignment - TraesCS6A01G227600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G227600 chr6A 100.000 3464 0 0 1 3464 428304288 428300825 0.000000e+00 6397.0
1 TraesCS6A01G227600 chr6B 96.288 1859 43 10 771 2624 457309504 457311341 0.000000e+00 3027.0
2 TraesCS6A01G227600 chr6B 94.048 84 5 0 264 347 457304760 457304843 1.010000e-25 128.0
3 TraesCS6A01G227600 chr6D 96.691 1753 37 9 771 2519 292782109 292783844 0.000000e+00 2896.0
4 TraesCS6A01G227600 chr6D 88.519 270 21 2 70 329 292781558 292781827 5.580000e-83 318.0
5 TraesCS6A01G227600 chr6D 98.529 68 1 0 2554 2621 292814886 292814953 1.690000e-23 121.0
6 TraesCS6A01G227600 chr3A 97.255 838 23 0 2627 3464 547942811 547943648 0.000000e+00 1421.0
7 TraesCS6A01G227600 chr3A 96.539 838 29 0 2627 3464 27901444 27902281 0.000000e+00 1387.0
8 TraesCS6A01G227600 chr3A 96.531 836 28 1 2630 3464 715220791 715219956 0.000000e+00 1382.0
9 TraesCS6A01G227600 chr3A 95.928 835 34 0 2630 3464 37640220 37639386 0.000000e+00 1354.0
10 TraesCS6A01G227600 chr5A 96.766 835 27 0 2630 3464 680763196 680762362 0.000000e+00 1393.0
11 TraesCS6A01G227600 chr5A 94.286 140 3 2 490 629 429471771 429471905 3.500000e-50 209.0
12 TraesCS6A01G227600 chr5A 96.429 84 3 0 387 470 429471697 429471780 4.660000e-29 139.0
13 TraesCS6A01G227600 chr5A 100.000 65 0 0 660 724 429474131 429474195 1.690000e-23 121.0
14 TraesCS6A01G227600 chr5A 93.750 48 3 0 346 393 429470979 429471026 4.800000e-09 73.1
15 TraesCS6A01G227600 chr2A 96.527 835 29 0 2630 3464 461399361 461398527 0.000000e+00 1382.0
16 TraesCS6A01G227600 chr2A 87.423 485 57 4 1961 2443 607875828 607875346 3.910000e-154 555.0
17 TraesCS6A01G227600 chr2A 75.914 793 158 24 1084 1864 607876686 607875915 3.260000e-100 375.0
18 TraesCS6A01G227600 chr1A 96.292 836 30 1 2630 3464 302919138 302918303 0.000000e+00 1371.0
19 TraesCS6A01G227600 chr3D 94.756 839 43 1 2627 3464 19759483 19760321 0.000000e+00 1304.0
20 TraesCS6A01G227600 chrUn 94.636 839 44 1 2627 3464 70151422 70152260 0.000000e+00 1299.0
21 TraesCS6A01G227600 chr2B 86.858 487 60 4 1959 2443 545433525 545434009 3.040000e-150 542.0
22 TraesCS6A01G227600 chr2B 81.087 460 77 7 1407 1864 545432965 545433416 3.290000e-95 359.0
23 TraesCS6A01G227600 chr2B 84.553 246 27 7 490 724 152703539 152703784 2.080000e-57 233.0
24 TraesCS6A01G227600 chr2D 86.680 488 61 4 1958 2443 466810471 466810956 3.930000e-149 538.0
25 TraesCS6A01G227600 chr2D 76.826 794 149 26 1084 1864 466809613 466810384 6.920000e-112 414.0
26 TraesCS6A01G227600 chr7A 85.944 249 24 7 490 727 649077315 649077067 4.440000e-64 255.0
27 TraesCS6A01G227600 chr7B 84.337 249 25 10 490 726 637335079 637335325 7.480000e-57 231.0
28 TraesCS6A01G227600 chr1B 84.064 251 27 8 490 728 611741599 611741848 2.690000e-56 230.0
29 TraesCS6A01G227600 chr1B 90.909 55 5 0 71 125 670361395 670361449 1.330000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G227600 chr6A 428300825 428304288 3463 True 6397.0 6397 100.0000 1 3464 1 chr6A.!!$R1 3463
1 TraesCS6A01G227600 chr6B 457309504 457311341 1837 False 3027.0 3027 96.2880 771 2624 1 chr6B.!!$F2 1853
2 TraesCS6A01G227600 chr6D 292781558 292783844 2286 False 1607.0 2896 92.6050 70 2519 2 chr6D.!!$F2 2449
3 TraesCS6A01G227600 chr3A 547942811 547943648 837 False 1421.0 1421 97.2550 2627 3464 1 chr3A.!!$F2 837
4 TraesCS6A01G227600 chr3A 27901444 27902281 837 False 1387.0 1387 96.5390 2627 3464 1 chr3A.!!$F1 837
5 TraesCS6A01G227600 chr3A 715219956 715220791 835 True 1382.0 1382 96.5310 2630 3464 1 chr3A.!!$R2 834
6 TraesCS6A01G227600 chr3A 37639386 37640220 834 True 1354.0 1354 95.9280 2630 3464 1 chr3A.!!$R1 834
7 TraesCS6A01G227600 chr5A 680762362 680763196 834 True 1393.0 1393 96.7660 2630 3464 1 chr5A.!!$R1 834
8 TraesCS6A01G227600 chr2A 461398527 461399361 834 True 1382.0 1382 96.5270 2630 3464 1 chr2A.!!$R1 834
9 TraesCS6A01G227600 chr2A 607875346 607876686 1340 True 465.0 555 81.6685 1084 2443 2 chr2A.!!$R2 1359
10 TraesCS6A01G227600 chr1A 302918303 302919138 835 True 1371.0 1371 96.2920 2630 3464 1 chr1A.!!$R1 834
11 TraesCS6A01G227600 chr3D 19759483 19760321 838 False 1304.0 1304 94.7560 2627 3464 1 chr3D.!!$F1 837
12 TraesCS6A01G227600 chrUn 70151422 70152260 838 False 1299.0 1299 94.6360 2627 3464 1 chrUn.!!$F1 837
13 TraesCS6A01G227600 chr2B 545432965 545434009 1044 False 450.5 542 83.9725 1407 2443 2 chr2B.!!$F2 1036
14 TraesCS6A01G227600 chr2D 466809613 466810956 1343 False 476.0 538 81.7530 1084 2443 2 chr2D.!!$F1 1359

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
409 477 0.034670 AAGGTCTTGGAGGCTGATGC 60.035 55.0 0.00 0.0 38.76 3.91 F
652 720 0.095935 CCGTGATTTTCAGCTCAGCG 59.904 55.0 0.00 0.0 0.00 5.18 F
654 722 0.179179 GTGATTTTCAGCTCAGCGCC 60.179 55.0 2.29 0.0 40.39 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1949 2073 0.099968 CTCCTGCATGCCAATTCACG 59.900 55.000 16.68 0.0 0.00 4.35 R
2428 2560 0.323816 TCCATCTCGAGCTGTCCACT 60.324 55.000 14.70 0.0 0.00 4.00 R
2484 2616 1.201647 ACGTGCATGCTTCGTAGTACT 59.798 47.619 28.96 0.0 36.05 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 5.429957 GCACCTATTTGCTTCTTATGGAG 57.570 43.478 0.00 0.00 39.59 3.86
30 31 5.126067 GCACCTATTTGCTTCTTATGGAGA 58.874 41.667 0.00 0.00 39.59 3.71
31 32 5.008118 GCACCTATTTGCTTCTTATGGAGAC 59.992 44.000 0.00 0.00 39.59 3.36
32 33 7.352951 GCACCTATTTGCTTCTTATGGAGACA 61.353 42.308 0.00 0.00 41.84 3.41
33 34 8.600665 GCACCTATTTGCTTCTTATGGAGACAT 61.601 40.741 0.00 0.00 46.00 3.06
48 49 5.820131 TGGAGACATATATTTGCTTTTGCG 58.180 37.500 0.00 0.00 42.36 4.85
49 50 5.588246 TGGAGACATATATTTGCTTTTGCGA 59.412 36.000 0.00 0.00 42.36 5.10
50 51 6.238456 TGGAGACATATATTTGCTTTTGCGAG 60.238 38.462 0.00 0.00 42.36 5.03
51 52 9.066637 TGGAGACATATATTTGCTTTTGCGAGG 62.067 40.741 0.00 0.00 42.36 4.63
63 64 5.884771 GCTTTTGCGAGGAAAATCTTATCT 58.115 37.500 3.13 0.00 34.86 1.98
64 65 5.741040 GCTTTTGCGAGGAAAATCTTATCTG 59.259 40.000 3.13 0.00 34.86 2.90
65 66 6.403636 GCTTTTGCGAGGAAAATCTTATCTGA 60.404 38.462 3.13 0.00 34.86 3.27
66 67 7.447374 TTTTGCGAGGAAAATCTTATCTGAA 57.553 32.000 0.00 0.00 0.00 3.02
67 68 7.447374 TTTGCGAGGAAAATCTTATCTGAAA 57.553 32.000 0.00 0.00 0.00 2.69
68 69 7.447374 TTGCGAGGAAAATCTTATCTGAAAA 57.553 32.000 0.00 0.00 0.00 2.29
107 108 3.394674 TCTCGTGGAAGCACATGTTTA 57.605 42.857 0.00 0.00 0.00 2.01
111 112 3.880490 TCGTGGAAGCACATGTTTACTTT 59.120 39.130 0.00 0.00 0.00 2.66
114 115 4.976116 GTGGAAGCACATGTTTACTTTCAC 59.024 41.667 20.55 20.55 40.42 3.18
115 116 4.219033 GGAAGCACATGTTTACTTTCACG 58.781 43.478 0.00 0.00 0.00 4.35
135 136 7.246674 TCACGAGAAGCATAAAAATATGGAC 57.753 36.000 0.00 0.00 0.00 4.02
139 140 7.770897 ACGAGAAGCATAAAAATATGGACTTCT 59.229 33.333 13.69 13.69 38.45 2.85
152 153 4.703645 TGGACTTCTACGAGAATCACAG 57.296 45.455 0.00 0.00 33.13 3.66
154 155 4.156190 TGGACTTCTACGAGAATCACAGAC 59.844 45.833 0.00 0.00 33.13 3.51
158 159 5.473846 ACTTCTACGAGAATCACAGACTTGA 59.526 40.000 0.00 0.00 33.13 3.02
167 168 7.073733 GAGAATCACAGACTTGATGTCATGGT 61.074 42.308 1.22 0.00 41.04 3.55
179 180 2.784347 TGTCATGGTGGTGCGAATTTA 58.216 42.857 0.00 0.00 0.00 1.40
185 186 3.482436 TGGTGGTGCGAATTTACTTTCT 58.518 40.909 0.00 0.00 0.00 2.52
192 193 6.038825 TGGTGCGAATTTACTTTCTCAAGAAA 59.961 34.615 5.17 5.17 41.29 2.52
278 289 7.448748 TTTTGAAAACCTAGTAGGATCTTGC 57.551 36.000 23.50 11.40 37.67 4.01
315 326 6.021596 CGCTTGTGAACAGACATATTTTACC 58.978 40.000 0.00 0.00 0.00 2.85
341 352 1.040646 GCCCAAAATAAGGCTAGCCC 58.959 55.000 30.42 12.55 46.14 5.19
343 354 2.962859 CCCAAAATAAGGCTAGCCCAT 58.037 47.619 30.42 21.35 36.58 4.00
344 355 2.893489 CCCAAAATAAGGCTAGCCCATC 59.107 50.000 30.42 5.25 36.58 3.51
345 356 3.565307 CCAAAATAAGGCTAGCCCATCA 58.435 45.455 30.42 13.14 36.58 3.07
346 357 3.571401 CCAAAATAAGGCTAGCCCATCAG 59.429 47.826 30.42 13.83 36.58 2.90
347 358 4.464008 CAAAATAAGGCTAGCCCATCAGA 58.536 43.478 30.42 9.59 36.58 3.27
348 359 4.363991 AAATAAGGCTAGCCCATCAGAG 57.636 45.455 30.42 0.00 36.58 3.35
349 360 1.051812 TAAGGCTAGCCCATCAGAGC 58.948 55.000 30.42 1.57 36.58 4.09
351 362 0.767446 AGGCTAGCCCATCAGAGCAT 60.767 55.000 30.42 4.39 36.63 3.79
352 363 0.321475 GGCTAGCCCATCAGAGCATC 60.321 60.000 24.19 0.00 36.63 3.91
354 365 5.683333 AGGCTAGCCCATCAGAGCATCTA 62.683 52.174 30.42 0.00 39.73 1.98
386 454 1.165270 TTTTCGCCTCTAAGCTTGCC 58.835 50.000 9.86 0.00 0.00 4.52
388 456 0.108138 TTCGCCTCTAAGCTTGCCTC 60.108 55.000 9.86 0.00 0.00 4.70
389 457 0.972983 TCGCCTCTAAGCTTGCCTCT 60.973 55.000 9.86 0.00 0.00 3.69
390 458 0.747255 CGCCTCTAAGCTTGCCTCTA 59.253 55.000 9.86 0.00 0.00 2.43
392 460 2.801342 CGCCTCTAAGCTTGCCTCTAAG 60.801 54.545 9.86 0.00 0.00 2.18
393 461 2.484594 GCCTCTAAGCTTGCCTCTAAGG 60.485 54.545 9.86 6.25 38.80 2.69
395 463 3.181470 CCTCTAAGCTTGCCTCTAAGGTC 60.181 52.174 9.86 0.00 37.41 3.85
397 465 4.097418 TCTAAGCTTGCCTCTAAGGTCTT 58.903 43.478 9.86 0.00 37.41 3.01
398 466 2.777832 AGCTTGCCTCTAAGGTCTTG 57.222 50.000 0.00 0.00 37.80 3.02
400 468 1.279271 GCTTGCCTCTAAGGTCTTGGA 59.721 52.381 0.00 0.00 37.80 3.53
405 473 2.977772 CTCTAAGGTCTTGGAGGCTG 57.022 55.000 13.97 0.00 42.30 4.85
406 474 2.461695 CTCTAAGGTCTTGGAGGCTGA 58.538 52.381 13.97 0.00 42.30 4.26
407 475 3.037549 CTCTAAGGTCTTGGAGGCTGAT 58.962 50.000 13.97 0.00 42.30 2.90
409 477 0.034670 AAGGTCTTGGAGGCTGATGC 60.035 55.000 0.00 0.00 38.76 3.91
410 478 0.913451 AGGTCTTGGAGGCTGATGCT 60.913 55.000 0.00 0.00 39.59 3.79
411 479 0.833287 GGTCTTGGAGGCTGATGCTA 59.167 55.000 0.00 0.00 39.59 3.49
412 480 1.419387 GGTCTTGGAGGCTGATGCTAT 59.581 52.381 0.00 0.00 39.59 2.97
413 481 2.492012 GTCTTGGAGGCTGATGCTATG 58.508 52.381 0.00 0.00 39.59 2.23
414 482 1.202734 TCTTGGAGGCTGATGCTATGC 60.203 52.381 0.00 0.00 39.59 3.14
415 483 0.547553 TTGGAGGCTGATGCTATGCA 59.452 50.000 0.00 0.00 44.86 3.96
425 493 3.888424 TGCTATGCATTGCAGTCCT 57.112 47.368 28.18 2.52 43.65 3.85
426 494 1.671979 TGCTATGCATTGCAGTCCTC 58.328 50.000 28.18 2.62 43.65 3.71
427 495 0.585357 GCTATGCATTGCAGTCCTCG 59.415 55.000 25.19 0.00 43.65 4.63
428 496 0.585357 CTATGCATTGCAGTCCTCGC 59.415 55.000 17.52 0.00 43.65 5.03
429 497 0.815213 TATGCATTGCAGTCCTCGCC 60.815 55.000 17.52 0.00 43.65 5.54
430 498 2.437359 GCATTGCAGTCCTCGCCT 60.437 61.111 3.15 0.00 0.00 5.52
431 499 2.467826 GCATTGCAGTCCTCGCCTC 61.468 63.158 3.15 0.00 0.00 4.70
432 500 1.220206 CATTGCAGTCCTCGCCTCT 59.780 57.895 0.00 0.00 0.00 3.69
433 501 0.461548 CATTGCAGTCCTCGCCTCTA 59.538 55.000 0.00 0.00 0.00 2.43
434 502 1.134699 CATTGCAGTCCTCGCCTCTAA 60.135 52.381 0.00 0.00 0.00 2.10
435 503 0.246635 TTGCAGTCCTCGCCTCTAAC 59.753 55.000 0.00 0.00 0.00 2.34
436 504 0.898326 TGCAGTCCTCGCCTCTAACA 60.898 55.000 0.00 0.00 0.00 2.41
437 505 0.461961 GCAGTCCTCGCCTCTAACAT 59.538 55.000 0.00 0.00 0.00 2.71
438 506 1.681793 GCAGTCCTCGCCTCTAACATA 59.318 52.381 0.00 0.00 0.00 2.29
439 507 2.100916 GCAGTCCTCGCCTCTAACATAA 59.899 50.000 0.00 0.00 0.00 1.90
440 508 3.430374 GCAGTCCTCGCCTCTAACATAAA 60.430 47.826 0.00 0.00 0.00 1.40
441 509 4.755411 CAGTCCTCGCCTCTAACATAAAA 58.245 43.478 0.00 0.00 0.00 1.52
442 510 5.175859 CAGTCCTCGCCTCTAACATAAAAA 58.824 41.667 0.00 0.00 0.00 1.94
443 511 5.817816 CAGTCCTCGCCTCTAACATAAAAAT 59.182 40.000 0.00 0.00 0.00 1.82
444 512 6.018669 CAGTCCTCGCCTCTAACATAAAAATC 60.019 42.308 0.00 0.00 0.00 2.17
445 513 5.047847 TCCTCGCCTCTAACATAAAAATCG 58.952 41.667 0.00 0.00 0.00 3.34
446 514 4.809426 CCTCGCCTCTAACATAAAAATCGT 59.191 41.667 0.00 0.00 0.00 3.73
447 515 5.293569 CCTCGCCTCTAACATAAAAATCGTT 59.706 40.000 0.00 0.00 0.00 3.85
448 516 6.102006 TCGCCTCTAACATAAAAATCGTTG 57.898 37.500 0.00 0.00 0.00 4.10
449 517 5.870433 TCGCCTCTAACATAAAAATCGTTGA 59.130 36.000 0.00 0.00 0.00 3.18
450 518 6.537301 TCGCCTCTAACATAAAAATCGTTGAT 59.463 34.615 0.00 0.00 0.00 2.57
451 519 6.628856 CGCCTCTAACATAAAAATCGTTGATG 59.371 38.462 0.00 0.00 0.00 3.07
452 520 7.472543 GCCTCTAACATAAAAATCGTTGATGT 58.527 34.615 0.00 0.00 32.18 3.06
453 521 7.640240 GCCTCTAACATAAAAATCGTTGATGTC 59.360 37.037 0.00 0.00 30.55 3.06
454 522 7.846107 CCTCTAACATAAAAATCGTTGATGTCG 59.154 37.037 0.00 0.00 30.55 4.35
455 523 7.177407 TCTAACATAAAAATCGTTGATGTCGC 58.823 34.615 0.00 0.00 30.55 5.19
456 524 4.658071 ACATAAAAATCGTTGATGTCGCC 58.342 39.130 0.00 0.00 0.00 5.54
457 525 4.394920 ACATAAAAATCGTTGATGTCGCCT 59.605 37.500 0.00 0.00 0.00 5.52
458 526 3.471495 AAAAATCGTTGATGTCGCCTC 57.529 42.857 0.00 0.00 0.00 4.70
459 527 2.386661 AAATCGTTGATGTCGCCTCT 57.613 45.000 0.00 0.00 0.00 3.69
460 528 3.520290 AAATCGTTGATGTCGCCTCTA 57.480 42.857 0.00 0.00 0.00 2.43
461 529 3.520290 AATCGTTGATGTCGCCTCTAA 57.480 42.857 0.00 0.00 0.00 2.10
462 530 2.561733 TCGTTGATGTCGCCTCTAAG 57.438 50.000 0.00 0.00 0.00 2.18
463 531 1.134367 TCGTTGATGTCGCCTCTAAGG 59.866 52.381 0.00 0.00 38.80 2.69
464 532 1.135083 CGTTGATGTCGCCTCTAAGGT 60.135 52.381 0.00 0.00 37.80 3.50
465 533 2.098607 CGTTGATGTCGCCTCTAAGGTA 59.901 50.000 0.00 0.00 37.80 3.08
466 534 3.428452 CGTTGATGTCGCCTCTAAGGTAA 60.428 47.826 0.00 0.00 37.80 2.85
467 535 4.113354 GTTGATGTCGCCTCTAAGGTAAG 58.887 47.826 0.00 0.00 37.80 2.34
468 536 3.628008 TGATGTCGCCTCTAAGGTAAGA 58.372 45.455 0.00 0.00 37.80 2.10
469 537 3.632604 TGATGTCGCCTCTAAGGTAAGAG 59.367 47.826 0.00 0.00 42.30 2.85
470 538 3.361281 TGTCGCCTCTAAGGTAAGAGA 57.639 47.619 2.47 0.00 44.93 3.10
471 539 3.015327 TGTCGCCTCTAAGGTAAGAGAC 58.985 50.000 2.47 0.00 44.93 3.36
472 540 3.015327 GTCGCCTCTAAGGTAAGAGACA 58.985 50.000 2.47 0.00 44.93 3.41
473 541 3.442977 GTCGCCTCTAAGGTAAGAGACAA 59.557 47.826 2.47 0.00 44.93 3.18
474 542 3.442977 TCGCCTCTAAGGTAAGAGACAAC 59.557 47.826 2.47 0.00 44.93 3.32
475 543 3.444388 CGCCTCTAAGGTAAGAGACAACT 59.556 47.826 2.47 0.00 44.93 3.16
476 544 4.639310 CGCCTCTAAGGTAAGAGACAACTA 59.361 45.833 2.47 0.00 44.93 2.24
477 545 5.448904 CGCCTCTAAGGTAAGAGACAACTAC 60.449 48.000 2.47 0.00 44.93 2.73
478 546 5.163530 GCCTCTAAGGTAAGAGACAACTACC 60.164 48.000 2.47 0.00 44.93 3.18
479 547 5.360429 CCTCTAAGGTAAGAGACAACTACCC 59.640 48.000 2.47 0.00 44.93 3.69
480 548 4.946157 TCTAAGGTAAGAGACAACTACCCG 59.054 45.833 0.00 0.00 0.00 5.28
481 549 3.166560 AGGTAAGAGACAACTACCCGT 57.833 47.619 0.00 0.00 0.00 5.28
482 550 3.087781 AGGTAAGAGACAACTACCCGTC 58.912 50.000 0.00 0.00 0.00 4.79
483 551 2.821969 GGTAAGAGACAACTACCCGTCA 59.178 50.000 0.00 0.00 34.48 4.35
484 552 3.256631 GGTAAGAGACAACTACCCGTCAA 59.743 47.826 0.00 0.00 34.48 3.18
485 553 4.262164 GGTAAGAGACAACTACCCGTCAAA 60.262 45.833 0.00 0.00 34.48 2.69
486 554 4.411256 AAGAGACAACTACCCGTCAAAA 57.589 40.909 0.00 0.00 34.48 2.44
487 555 4.411256 AGAGACAACTACCCGTCAAAAA 57.589 40.909 0.00 0.00 34.48 1.94
505 573 2.980246 AAAAAGGTAAGAGGCAGCCT 57.020 45.000 16.12 16.12 36.03 4.58
513 581 4.232310 GAGGCAGCCTCCATTCAC 57.768 61.111 29.22 4.08 44.36 3.18
514 582 1.606531 GAGGCAGCCTCCATTCACT 59.393 57.895 29.22 0.00 44.36 3.41
515 583 0.034670 GAGGCAGCCTCCATTCACTT 60.035 55.000 29.22 0.00 44.36 3.16
516 584 1.210478 GAGGCAGCCTCCATTCACTTA 59.790 52.381 29.22 0.00 44.36 2.24
517 585 1.635487 AGGCAGCCTCCATTCACTTAA 59.365 47.619 8.70 0.00 0.00 1.85
518 586 2.041620 AGGCAGCCTCCATTCACTTAAA 59.958 45.455 8.70 0.00 0.00 1.52
519 587 2.825532 GGCAGCCTCCATTCACTTAAAA 59.174 45.455 3.29 0.00 0.00 1.52
520 588 3.258123 GGCAGCCTCCATTCACTTAAAAA 59.742 43.478 3.29 0.00 0.00 1.94
543 611 9.992910 AAAAATTCAAAAGAATCAACTCTTTGC 57.007 25.926 0.00 0.00 43.33 3.68
544 612 8.721019 AAATTCAAAAGAATCAACTCTTTGCA 57.279 26.923 0.00 0.00 43.33 4.08
545 613 8.897872 AATTCAAAAGAATCAACTCTTTGCAT 57.102 26.923 0.00 0.00 43.33 3.96
546 614 7.703298 TTCAAAAGAATCAACTCTTTGCATG 57.297 32.000 0.00 0.00 43.33 4.06
547 615 6.218019 TCAAAAGAATCAACTCTTTGCATGG 58.782 36.000 0.00 0.00 43.33 3.66
548 616 3.863142 AGAATCAACTCTTTGCATGGC 57.137 42.857 0.00 0.00 32.17 4.40
549 617 3.428532 AGAATCAACTCTTTGCATGGCT 58.571 40.909 0.00 0.00 32.17 4.75
550 618 3.192844 AGAATCAACTCTTTGCATGGCTG 59.807 43.478 0.00 0.00 32.17 4.85
551 619 1.250328 TCAACTCTTTGCATGGCTGG 58.750 50.000 0.00 0.00 32.17 4.85
552 620 0.245539 CAACTCTTTGCATGGCTGGG 59.754 55.000 0.00 0.00 0.00 4.45
553 621 0.178953 AACTCTTTGCATGGCTGGGT 60.179 50.000 0.00 0.00 0.00 4.51
554 622 0.178953 ACTCTTTGCATGGCTGGGTT 60.179 50.000 0.00 0.00 0.00 4.11
555 623 0.529378 CTCTTTGCATGGCTGGGTTC 59.471 55.000 0.00 0.00 0.00 3.62
556 624 0.112995 TCTTTGCATGGCTGGGTTCT 59.887 50.000 0.00 0.00 0.00 3.01
557 625 0.529378 CTTTGCATGGCTGGGTTCTC 59.471 55.000 0.00 0.00 0.00 2.87
558 626 0.112995 TTTGCATGGCTGGGTTCTCT 59.887 50.000 0.00 0.00 0.00 3.10
559 627 0.322816 TTGCATGGCTGGGTTCTCTC 60.323 55.000 0.00 0.00 0.00 3.20
560 628 1.300963 GCATGGCTGGGTTCTCTCA 59.699 57.895 0.00 0.00 0.00 3.27
561 629 1.028868 GCATGGCTGGGTTCTCTCAC 61.029 60.000 0.00 0.00 0.00 3.51
562 630 0.742281 CATGGCTGGGTTCTCTCACG 60.742 60.000 0.00 0.00 0.00 4.35
563 631 2.435059 GGCTGGGTTCTCTCACGC 60.435 66.667 0.00 0.00 0.00 5.34
581 649 2.480419 ACGCATGTGAACAGCTCTAAAC 59.520 45.455 14.43 0.00 0.00 2.01
582 650 2.738846 CGCATGTGAACAGCTCTAAACT 59.261 45.455 0.00 0.00 0.00 2.66
586 654 5.673068 GCATGTGAACAGCTCTAAACTCATG 60.673 44.000 0.00 0.00 34.19 3.07
587 655 4.318332 TGTGAACAGCTCTAAACTCATGG 58.682 43.478 0.00 0.00 0.00 3.66
590 658 3.902881 ACAGCTCTAAACTCATGGAGG 57.097 47.619 0.00 0.00 33.35 4.30
591 659 3.445008 ACAGCTCTAAACTCATGGAGGA 58.555 45.455 0.00 0.00 33.35 3.71
596 664 6.481644 CAGCTCTAAACTCATGGAGGAATTAC 59.518 42.308 0.00 0.00 33.35 1.89
599 667 8.204836 GCTCTAAACTCATGGAGGAATTACTTA 58.795 37.037 0.00 0.00 33.35 2.24
618 686 8.611654 TTACTTATTTACTTGTTGACTGGGAC 57.388 34.615 0.00 0.00 0.00 4.46
619 687 6.002082 ACTTATTTACTTGTTGACTGGGACC 58.998 40.000 0.00 0.00 0.00 4.46
620 688 4.724279 ATTTACTTGTTGACTGGGACCT 57.276 40.909 0.00 0.00 0.00 3.85
623 691 1.348036 ACTTGTTGACTGGGACCTAGC 59.652 52.381 4.46 0.00 0.00 3.42
624 692 1.625818 CTTGTTGACTGGGACCTAGCT 59.374 52.381 4.46 0.00 0.00 3.32
625 693 1.729586 TGTTGACTGGGACCTAGCTT 58.270 50.000 4.46 0.00 0.00 3.74
628 696 3.097614 GTTGACTGGGACCTAGCTTAGA 58.902 50.000 4.46 0.00 0.00 2.10
629 697 2.736347 TGACTGGGACCTAGCTTAGAC 58.264 52.381 4.46 0.00 0.00 2.59
630 698 2.042569 TGACTGGGACCTAGCTTAGACA 59.957 50.000 4.46 0.00 0.00 3.41
631 699 2.427812 GACTGGGACCTAGCTTAGACAC 59.572 54.545 4.46 0.00 0.00 3.67
632 700 2.043252 ACTGGGACCTAGCTTAGACACT 59.957 50.000 4.46 0.00 0.00 3.55
633 701 2.691011 CTGGGACCTAGCTTAGACACTC 59.309 54.545 0.00 0.00 0.00 3.51
634 702 2.033372 GGGACCTAGCTTAGACACTCC 58.967 57.143 0.00 0.00 0.00 3.85
635 703 1.677052 GGACCTAGCTTAGACACTCCG 59.323 57.143 0.00 0.00 0.00 4.63
636 704 2.367486 GACCTAGCTTAGACACTCCGT 58.633 52.381 0.00 0.00 0.00 4.69
637 705 2.093106 ACCTAGCTTAGACACTCCGTG 58.907 52.381 0.00 0.00 39.75 4.94
638 706 2.290768 ACCTAGCTTAGACACTCCGTGA 60.291 50.000 0.00 0.00 36.96 4.35
639 707 2.952978 CCTAGCTTAGACACTCCGTGAT 59.047 50.000 0.00 0.00 36.96 3.06
640 708 3.381908 CCTAGCTTAGACACTCCGTGATT 59.618 47.826 0.00 0.00 36.96 2.57
641 709 3.963428 AGCTTAGACACTCCGTGATTT 57.037 42.857 0.38 0.00 36.96 2.17
642 710 4.273148 AGCTTAGACACTCCGTGATTTT 57.727 40.909 0.38 0.00 36.96 1.82
643 711 4.246458 AGCTTAGACACTCCGTGATTTTC 58.754 43.478 0.38 0.00 36.96 2.29
644 712 3.994392 GCTTAGACACTCCGTGATTTTCA 59.006 43.478 0.38 0.00 36.96 2.69
645 713 4.092091 GCTTAGACACTCCGTGATTTTCAG 59.908 45.833 0.38 0.00 36.96 3.02
646 714 2.417719 AGACACTCCGTGATTTTCAGC 58.582 47.619 0.38 0.00 36.96 4.26
647 715 2.037772 AGACACTCCGTGATTTTCAGCT 59.962 45.455 0.38 0.00 36.96 4.24
648 716 2.413453 GACACTCCGTGATTTTCAGCTC 59.587 50.000 0.38 0.00 36.96 4.09
649 717 2.224281 ACACTCCGTGATTTTCAGCTCA 60.224 45.455 0.38 0.00 36.96 4.26
650 718 2.414481 CACTCCGTGATTTTCAGCTCAG 59.586 50.000 0.00 0.00 35.23 3.35
651 719 1.396301 CTCCGTGATTTTCAGCTCAGC 59.604 52.381 0.00 0.00 0.00 4.26
652 720 0.095935 CCGTGATTTTCAGCTCAGCG 59.904 55.000 0.00 0.00 0.00 5.18
653 721 0.519999 CGTGATTTTCAGCTCAGCGC 60.520 55.000 0.00 0.00 39.57 5.92
654 722 0.179179 GTGATTTTCAGCTCAGCGCC 60.179 55.000 2.29 0.00 40.39 6.53
655 723 0.321919 TGATTTTCAGCTCAGCGCCT 60.322 50.000 2.29 0.00 40.39 5.52
656 724 0.376502 GATTTTCAGCTCAGCGCCTC 59.623 55.000 2.29 0.00 40.39 4.70
657 725 0.321919 ATTTTCAGCTCAGCGCCTCA 60.322 50.000 2.29 0.00 40.39 3.86
658 726 0.952497 TTTTCAGCTCAGCGCCTCAG 60.952 55.000 2.29 0.00 40.39 3.35
659 727 3.947132 TTCAGCTCAGCGCCTCAGC 62.947 63.158 13.53 13.53 40.39 4.26
661 729 3.704207 AGCTCAGCGCCTCAGCTT 61.704 61.111 17.25 4.75 46.80 3.74
662 730 2.185350 GCTCAGCGCCTCAGCTTA 59.815 61.111 13.99 0.00 46.80 3.09
663 731 1.882167 GCTCAGCGCCTCAGCTTAG 60.882 63.158 13.99 0.00 46.80 2.18
664 732 1.812525 CTCAGCGCCTCAGCTTAGA 59.187 57.895 2.29 0.00 46.80 2.10
665 733 0.248990 CTCAGCGCCTCAGCTTAGAG 60.249 60.000 2.29 0.00 46.80 2.43
673 741 1.919918 CTCAGCTTAGAGGCTTCACG 58.080 55.000 0.00 0.00 41.00 4.35
674 742 1.203523 CTCAGCTTAGAGGCTTCACGT 59.796 52.381 0.00 0.00 41.00 4.49
675 743 1.067565 TCAGCTTAGAGGCTTCACGTG 60.068 52.381 9.94 9.94 41.00 4.49
676 744 0.247736 AGCTTAGAGGCTTCACGTGG 59.752 55.000 17.00 0.92 39.86 4.94
677 745 0.741221 GCTTAGAGGCTTCACGTGGG 60.741 60.000 17.00 10.25 0.00 4.61
678 746 0.608640 CTTAGAGGCTTCACGTGGGT 59.391 55.000 17.00 0.00 0.00 4.51
679 747 0.606604 TTAGAGGCTTCACGTGGGTC 59.393 55.000 17.00 10.69 0.00 4.46
680 748 1.255667 TAGAGGCTTCACGTGGGTCC 61.256 60.000 17.00 13.55 0.00 4.46
681 749 3.607370 GAGGCTTCACGTGGGTCCC 62.607 68.421 17.00 11.10 0.00 4.46
682 750 3.948719 GGCTTCACGTGGGTCCCA 61.949 66.667 17.00 6.47 0.00 4.37
683 751 2.358737 GCTTCACGTGGGTCCCAG 60.359 66.667 12.21 8.34 32.34 4.45
684 752 2.358737 CTTCACGTGGGTCCCAGC 60.359 66.667 12.21 5.62 32.34 4.85
685 753 2.847234 TTCACGTGGGTCCCAGCT 60.847 61.111 12.21 0.00 32.34 4.24
686 754 2.397413 CTTCACGTGGGTCCCAGCTT 62.397 60.000 12.21 0.00 32.34 3.74
687 755 1.122632 TTCACGTGGGTCCCAGCTTA 61.123 55.000 12.21 0.00 32.34 3.09
688 756 1.079127 CACGTGGGTCCCAGCTTAG 60.079 63.158 12.21 3.30 32.34 2.18
689 757 1.229082 ACGTGGGTCCCAGCTTAGA 60.229 57.895 12.21 0.00 32.34 2.10
690 758 1.258445 ACGTGGGTCCCAGCTTAGAG 61.258 60.000 12.21 0.00 32.34 2.43
691 759 1.908483 GTGGGTCCCAGCTTAGAGG 59.092 63.158 12.21 0.00 32.34 3.69
692 760 1.995626 TGGGTCCCAGCTTAGAGGC 60.996 63.158 6.47 0.00 0.00 4.70
693 761 1.995626 GGGTCCCAGCTTAGAGGCA 60.996 63.158 1.78 0.00 34.17 4.75
694 762 1.524482 GGTCCCAGCTTAGAGGCAG 59.476 63.158 0.00 0.00 34.17 4.85
695 763 1.153269 GTCCCAGCTTAGAGGCAGC 60.153 63.158 0.00 0.00 37.56 5.25
696 764 1.613332 TCCCAGCTTAGAGGCAGCA 60.613 57.895 0.00 0.00 39.99 4.41
697 765 0.984961 TCCCAGCTTAGAGGCAGCAT 60.985 55.000 0.00 0.00 39.99 3.79
698 766 0.534652 CCCAGCTTAGAGGCAGCATC 60.535 60.000 0.00 0.00 39.99 3.91
699 767 0.879400 CCAGCTTAGAGGCAGCATCG 60.879 60.000 0.42 0.00 39.99 3.84
700 768 1.227497 AGCTTAGAGGCAGCATCGC 60.227 57.895 0.42 0.00 39.99 4.58
708 776 2.747460 GCAGCATCGCCTCCAACA 60.747 61.111 0.00 0.00 0.00 3.33
709 777 3.044059 GCAGCATCGCCTCCAACAC 62.044 63.158 0.00 0.00 0.00 3.32
710 778 1.672030 CAGCATCGCCTCCAACACA 60.672 57.895 0.00 0.00 0.00 3.72
711 779 1.672356 AGCATCGCCTCCAACACAC 60.672 57.895 0.00 0.00 0.00 3.82
712 780 1.672356 GCATCGCCTCCAACACACT 60.672 57.895 0.00 0.00 0.00 3.55
713 781 1.915614 GCATCGCCTCCAACACACTG 61.916 60.000 0.00 0.00 0.00 3.66
714 782 1.672356 ATCGCCTCCAACACACTGC 60.672 57.895 0.00 0.00 0.00 4.40
715 783 2.116983 ATCGCCTCCAACACACTGCT 62.117 55.000 0.00 0.00 0.00 4.24
716 784 2.610694 CGCCTCCAACACACTGCTG 61.611 63.158 0.00 0.00 0.00 4.41
717 785 1.227943 GCCTCCAACACACTGCTGA 60.228 57.895 0.00 0.00 0.00 4.26
718 786 0.607489 GCCTCCAACACACTGCTGAT 60.607 55.000 0.00 0.00 0.00 2.90
719 787 1.162698 CCTCCAACACACTGCTGATG 58.837 55.000 0.00 0.00 0.00 3.07
720 788 0.520404 CTCCAACACACTGCTGATGC 59.480 55.000 0.00 0.00 40.20 3.91
721 789 0.890542 TCCAACACACTGCTGATGCC 60.891 55.000 0.00 0.00 38.71 4.40
722 790 1.582968 CAACACACTGCTGATGCCC 59.417 57.895 0.00 0.00 38.71 5.36
723 791 0.892358 CAACACACTGCTGATGCCCT 60.892 55.000 0.00 0.00 38.71 5.19
724 792 0.607489 AACACACTGCTGATGCCCTC 60.607 55.000 0.00 0.00 38.71 4.30
725 793 1.002990 CACACTGCTGATGCCCTCA 60.003 57.895 0.00 0.00 38.71 3.86
733 801 1.664873 CTGATGCCCTCAGTGACATG 58.335 55.000 0.00 0.00 45.42 3.21
734 802 1.208776 CTGATGCCCTCAGTGACATGA 59.791 52.381 0.00 0.00 45.42 3.07
742 810 3.588955 CCTCAGTGACATGAATGAACGA 58.411 45.455 0.00 0.00 0.00 3.85
786 898 0.519961 CCTTTACCAAAACGGGAGCG 59.480 55.000 0.00 0.00 40.22 5.03
814 926 2.851195 ACAAACAATGTCGCCTTCTCT 58.149 42.857 0.00 0.00 37.96 3.10
947 1059 0.271927 TCTGGCCAATCCTATCCCCT 59.728 55.000 7.01 0.00 35.26 4.79
1206 1321 4.424711 GCATGGAACCTCCGGCCA 62.425 66.667 2.24 0.00 40.17 5.36
1885 2003 6.200854 GGTCACTGATTTTTGGAATTCAACAC 59.799 38.462 7.93 0.00 34.67 3.32
1898 2016 6.030228 GGAATTCAACACCGATCATCTTTTC 58.970 40.000 7.93 0.00 0.00 2.29
1920 2044 2.905959 TTCTCAATCACGCAATGCAG 57.094 45.000 5.91 0.42 0.00 4.41
1935 2059 2.905959 TGCAGCATCGTTCATCTTTG 57.094 45.000 0.00 0.00 0.00 2.77
1945 2069 6.414109 GCATCGTTCATCTTTGAAATCTGATG 59.586 38.462 0.00 12.37 43.29 3.07
1946 2070 7.677982 GCATCGTTCATCTTTGAAATCTGATGA 60.678 37.037 16.86 4.75 43.29 2.92
1947 2071 7.854557 TCGTTCATCTTTGAAATCTGATGAT 57.145 32.000 8.53 0.00 43.29 2.45
1949 2073 8.393366 TCGTTCATCTTTGAAATCTGATGATTC 58.607 33.333 8.53 0.00 43.29 2.52
1954 2078 7.671495 TCTTTGAAATCTGATGATTCGTGAA 57.329 32.000 0.00 0.00 41.62 3.18
1955 2079 8.272545 TCTTTGAAATCTGATGATTCGTGAAT 57.727 30.769 0.00 0.00 41.62 2.57
1956 2080 8.733458 TCTTTGAAATCTGATGATTCGTGAATT 58.267 29.630 0.00 0.00 41.62 2.17
2046 2178 1.987855 GGTGGTGATCGGGGAGACA 60.988 63.158 0.00 0.00 0.00 3.41
2316 2448 1.198759 AGTACCAGTGGGGCGTCAAT 61.199 55.000 15.21 0.00 42.05 2.57
2424 2556 2.462782 CGACGACGAGGAGGAGTCC 61.463 68.421 0.00 0.00 44.33 3.85
2483 2615 8.928270 TTCTAAGCTTTAGTTCATACTGTAGC 57.072 34.615 3.20 0.00 40.00 3.58
2484 2616 8.063200 TCTAAGCTTTAGTTCATACTGTAGCA 57.937 34.615 3.20 0.00 41.12 3.49
2485 2617 8.191446 TCTAAGCTTTAGTTCATACTGTAGCAG 58.809 37.037 3.20 0.00 41.12 4.24
2518 2650 2.357075 TGCACGTTTCCAAGTGTTGTA 58.643 42.857 0.00 0.00 40.26 2.41
2519 2651 2.096174 TGCACGTTTCCAAGTGTTGTAC 59.904 45.455 0.00 0.00 40.26 2.90
2540 2672 7.239438 TGTACTATTAGCTAGCCTCCTGTATT 58.761 38.462 12.13 0.00 0.00 1.89
2574 2706 1.808945 CCGTTTCTTGCTCAGATGCTT 59.191 47.619 0.00 0.00 0.00 3.91
2595 2727 4.345271 TGCGCATCATCATACATAATGC 57.655 40.909 5.66 0.00 39.41 3.56
2619 2751 4.451435 CGTCGTAGAGGCACATCTATTAGA 59.549 45.833 0.00 0.00 36.95 2.10
2624 2756 6.374613 CGTAGAGGCACATCTATTAGACCATA 59.625 42.308 0.00 0.00 34.41 2.74
2625 2757 6.597832 AGAGGCACATCTATTAGACCATAC 57.402 41.667 0.00 0.00 0.00 2.39
2628 2760 6.077993 AGGCACATCTATTAGACCATACAGA 58.922 40.000 0.00 0.00 0.00 3.41
2713 2847 0.388649 CAGAAAGCTACCAGTCGCGT 60.389 55.000 5.77 0.00 0.00 6.01
2758 2892 0.606604 ACACCCGTGACTAGCGATTT 59.393 50.000 0.96 0.00 0.00 2.17
2793 2927 2.753701 CCCGGACCCACATGTCAA 59.246 61.111 0.73 0.00 36.97 3.18
3185 3319 2.281484 GAAGGCGGCCACACTTGA 60.281 61.111 23.09 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 5.008118 GTCTCCATAAGAAGCAAATAGGTGC 59.992 44.000 0.00 0.00 45.28 5.01
8 9 6.115446 TGTCTCCATAAGAAGCAAATAGGTG 58.885 40.000 0.00 0.00 35.21 4.00
9 10 6.313519 TGTCTCCATAAGAAGCAAATAGGT 57.686 37.500 0.00 0.00 35.21 3.08
15 16 8.786898 GCAAATATATGTCTCCATAAGAAGCAA 58.213 33.333 0.00 0.00 37.12 3.91
16 17 8.159447 AGCAAATATATGTCTCCATAAGAAGCA 58.841 33.333 0.00 0.00 37.12 3.91
17 18 8.558973 AGCAAATATATGTCTCCATAAGAAGC 57.441 34.615 0.00 0.00 37.12 3.86
21 22 9.403110 GCAAAAGCAAATATATGTCTCCATAAG 57.597 33.333 0.00 0.00 37.12 1.73
22 23 8.075574 CGCAAAAGCAAATATATGTCTCCATAA 58.924 33.333 0.00 0.00 37.12 1.90
23 24 7.443879 TCGCAAAAGCAAATATATGTCTCCATA 59.556 33.333 0.00 0.00 37.92 2.74
24 25 6.262944 TCGCAAAAGCAAATATATGTCTCCAT 59.737 34.615 0.00 0.00 34.97 3.41
25 26 5.588246 TCGCAAAAGCAAATATATGTCTCCA 59.412 36.000 0.00 0.00 0.00 3.86
26 27 6.060028 TCGCAAAAGCAAATATATGTCTCC 57.940 37.500 0.00 0.00 0.00 3.71
27 28 6.017934 TCCTCGCAAAAGCAAATATATGTCTC 60.018 38.462 0.00 0.00 0.00 3.36
28 29 5.822519 TCCTCGCAAAAGCAAATATATGTCT 59.177 36.000 0.00 0.00 0.00 3.41
29 30 6.060028 TCCTCGCAAAAGCAAATATATGTC 57.940 37.500 0.00 0.00 0.00 3.06
30 31 6.449635 TTCCTCGCAAAAGCAAATATATGT 57.550 33.333 0.00 0.00 0.00 2.29
31 32 7.754069 TTTTCCTCGCAAAAGCAAATATATG 57.246 32.000 0.00 0.00 0.00 1.78
32 33 8.416329 AGATTTTCCTCGCAAAAGCAAATATAT 58.584 29.630 5.50 0.00 34.69 0.86
33 34 7.771183 AGATTTTCCTCGCAAAAGCAAATATA 58.229 30.769 5.50 0.00 34.69 0.86
34 35 6.633856 AGATTTTCCTCGCAAAAGCAAATAT 58.366 32.000 5.50 0.00 34.69 1.28
35 36 6.024552 AGATTTTCCTCGCAAAAGCAAATA 57.975 33.333 5.50 0.00 34.69 1.40
36 37 4.886579 AGATTTTCCTCGCAAAAGCAAAT 58.113 34.783 5.50 0.00 34.69 2.32
37 38 4.320608 AGATTTTCCTCGCAAAAGCAAA 57.679 36.364 5.50 0.00 34.69 3.68
38 39 4.320608 AAGATTTTCCTCGCAAAAGCAA 57.679 36.364 5.50 0.00 34.69 3.91
39 40 5.415701 AGATAAGATTTTCCTCGCAAAAGCA 59.584 36.000 5.50 0.00 34.69 3.91
40 41 5.741040 CAGATAAGATTTTCCTCGCAAAAGC 59.259 40.000 0.00 0.00 32.82 3.51
41 42 7.076842 TCAGATAAGATTTTCCTCGCAAAAG 57.923 36.000 0.00 0.00 0.00 2.27
42 43 7.447374 TTCAGATAAGATTTTCCTCGCAAAA 57.553 32.000 0.00 0.00 0.00 2.44
43 44 7.447374 TTTCAGATAAGATTTTCCTCGCAAA 57.553 32.000 0.00 0.00 0.00 3.68
44 45 7.447374 TTTTCAGATAAGATTTTCCTCGCAA 57.553 32.000 0.00 0.00 0.00 4.85
45 46 7.447374 TTTTTCAGATAAGATTTTCCTCGCA 57.553 32.000 0.00 0.00 0.00 5.10
74 75 4.200838 TCCACGAGAAGCAAATATGTGA 57.799 40.909 0.00 0.00 0.00 3.58
107 108 8.184192 CCATATTTTTATGCTTCTCGTGAAAGT 58.816 33.333 1.12 0.00 0.00 2.66
111 112 7.047891 AGTCCATATTTTTATGCTTCTCGTGA 58.952 34.615 0.00 0.00 0.00 4.35
114 115 8.147642 AGAAGTCCATATTTTTATGCTTCTCG 57.852 34.615 0.00 0.00 34.65 4.04
135 136 5.944013 TCAAGTCTGTGATTCTCGTAGAAG 58.056 41.667 4.16 0.00 37.69 2.85
139 140 5.641709 GACATCAAGTCTGTGATTCTCGTA 58.358 41.667 0.00 0.00 44.09 3.43
154 155 0.448990 CGCACCACCATGACATCAAG 59.551 55.000 0.00 0.00 0.00 3.02
158 159 1.838112 AATTCGCACCACCATGACAT 58.162 45.000 0.00 0.00 0.00 3.06
167 168 5.060506 TCTTGAGAAAGTAAATTCGCACCA 58.939 37.500 0.00 0.00 38.56 4.17
170 171 6.910433 GTGTTTCTTGAGAAAGTAAATTCGCA 59.090 34.615 6.43 0.00 43.82 5.10
259 270 6.174049 GTGAAGCAAGATCCTACTAGGTTTT 58.826 40.000 1.83 0.00 36.53 2.43
267 278 5.275067 AGATCTGTGAAGCAAGATCCTAC 57.725 43.478 8.64 0.00 38.24 3.18
278 289 3.838120 TCACAAGCGTAGATCTGTGAAG 58.162 45.455 5.18 0.00 39.48 3.02
329 340 1.627834 GCTCTGATGGGCTAGCCTTAT 59.372 52.381 32.18 25.18 36.10 1.73
330 341 1.051812 GCTCTGATGGGCTAGCCTTA 58.948 55.000 32.18 21.78 36.10 2.69
331 342 0.984961 TGCTCTGATGGGCTAGCCTT 60.985 55.000 32.18 20.41 33.99 4.35
332 343 0.767446 ATGCTCTGATGGGCTAGCCT 60.767 55.000 32.18 14.96 33.99 4.58
333 344 0.321475 GATGCTCTGATGGGCTAGCC 60.321 60.000 26.55 26.55 33.99 3.93
334 345 0.686224 AGATGCTCTGATGGGCTAGC 59.314 55.000 6.04 6.04 35.51 3.42
335 346 2.094803 CGTAGATGCTCTGATGGGCTAG 60.095 54.545 0.00 0.00 0.00 3.42
337 348 0.678395 CGTAGATGCTCTGATGGGCT 59.322 55.000 0.00 0.00 0.00 5.19
338 349 0.320247 CCGTAGATGCTCTGATGGGC 60.320 60.000 0.00 0.00 0.00 5.36
339 350 1.043816 ACCGTAGATGCTCTGATGGG 58.956 55.000 0.00 0.00 0.00 4.00
340 351 1.410517 ACACCGTAGATGCTCTGATGG 59.589 52.381 0.00 0.00 0.00 3.51
341 352 2.879002 ACACCGTAGATGCTCTGATG 57.121 50.000 0.00 0.00 0.00 3.07
343 354 2.943690 GACTACACCGTAGATGCTCTGA 59.056 50.000 8.11 0.00 0.00 3.27
344 355 2.946329 AGACTACACCGTAGATGCTCTG 59.054 50.000 8.11 0.00 0.00 3.35
345 356 3.284793 AGACTACACCGTAGATGCTCT 57.715 47.619 8.11 0.00 0.00 4.09
346 357 4.373348 AAAGACTACACCGTAGATGCTC 57.627 45.455 8.11 0.00 0.00 4.26
347 358 4.803098 AAAAGACTACACCGTAGATGCT 57.197 40.909 8.11 0.44 0.00 3.79
371 439 0.747255 TAGAGGCAAGCTTAGAGGCG 59.253 55.000 0.00 0.00 37.29 5.52
372 440 2.484594 CCTTAGAGGCAAGCTTAGAGGC 60.485 54.545 0.00 0.00 0.00 4.70
373 441 2.769095 ACCTTAGAGGCAAGCTTAGAGG 59.231 50.000 0.00 1.81 39.63 3.69
374 442 3.704061 AGACCTTAGAGGCAAGCTTAGAG 59.296 47.826 0.00 0.00 39.63 2.43
376 444 4.187694 CAAGACCTTAGAGGCAAGCTTAG 58.812 47.826 0.00 0.00 39.63 2.18
378 446 2.290577 CCAAGACCTTAGAGGCAAGCTT 60.291 50.000 0.00 0.00 39.63 3.74
379 447 1.280421 CCAAGACCTTAGAGGCAAGCT 59.720 52.381 0.00 0.00 39.63 3.74
380 448 1.279271 TCCAAGACCTTAGAGGCAAGC 59.721 52.381 0.00 0.00 39.63 4.01
381 449 2.093235 CCTCCAAGACCTTAGAGGCAAG 60.093 54.545 10.46 0.00 40.53 4.01
386 454 2.461695 TCAGCCTCCAAGACCTTAGAG 58.538 52.381 0.00 0.00 0.00 2.43
388 456 2.744494 GCATCAGCCTCCAAGACCTTAG 60.744 54.545 0.00 0.00 33.58 2.18
389 457 1.210478 GCATCAGCCTCCAAGACCTTA 59.790 52.381 0.00 0.00 33.58 2.69
390 458 0.034670 GCATCAGCCTCCAAGACCTT 60.035 55.000 0.00 0.00 33.58 3.50
392 460 0.833287 TAGCATCAGCCTCCAAGACC 59.167 55.000 0.00 0.00 43.56 3.85
393 461 2.492012 CATAGCATCAGCCTCCAAGAC 58.508 52.381 0.00 0.00 43.56 3.01
395 463 1.236628 GCATAGCATCAGCCTCCAAG 58.763 55.000 0.00 0.00 43.56 3.61
397 465 2.223852 TGCATAGCATCAGCCTCCA 58.776 52.632 0.00 0.00 43.56 3.86
407 475 1.671979 GAGGACTGCAATGCATAGCA 58.328 50.000 8.91 0.00 44.86 3.49
409 477 0.585357 GCGAGGACTGCAATGCATAG 59.415 55.000 8.91 0.00 38.13 2.23
410 478 0.815213 GGCGAGGACTGCAATGCATA 60.815 55.000 8.91 0.00 38.13 3.14
411 479 2.117156 GGCGAGGACTGCAATGCAT 61.117 57.895 8.91 0.00 38.13 3.96
412 480 2.747460 GGCGAGGACTGCAATGCA 60.747 61.111 7.99 7.99 36.92 3.96
413 481 2.437359 AGGCGAGGACTGCAATGC 60.437 61.111 0.00 0.00 0.00 3.56
414 482 0.461548 TAGAGGCGAGGACTGCAATG 59.538 55.000 0.00 0.00 0.00 2.82
415 483 1.134670 GTTAGAGGCGAGGACTGCAAT 60.135 52.381 0.00 0.00 0.00 3.56
416 484 0.246635 GTTAGAGGCGAGGACTGCAA 59.753 55.000 0.00 0.00 0.00 4.08
417 485 0.898326 TGTTAGAGGCGAGGACTGCA 60.898 55.000 0.00 0.00 0.00 4.41
418 486 0.461961 ATGTTAGAGGCGAGGACTGC 59.538 55.000 0.00 0.00 0.00 4.40
419 487 4.386867 TTTATGTTAGAGGCGAGGACTG 57.613 45.455 0.00 0.00 0.00 3.51
420 488 5.416271 TTTTTATGTTAGAGGCGAGGACT 57.584 39.130 0.00 0.00 0.00 3.85
421 489 5.050972 CGATTTTTATGTTAGAGGCGAGGAC 60.051 44.000 0.00 0.00 0.00 3.85
422 490 5.047847 CGATTTTTATGTTAGAGGCGAGGA 58.952 41.667 0.00 0.00 0.00 3.71
423 491 4.809426 ACGATTTTTATGTTAGAGGCGAGG 59.191 41.667 0.00 0.00 0.00 4.63
424 492 5.968387 ACGATTTTTATGTTAGAGGCGAG 57.032 39.130 0.00 0.00 0.00 5.03
425 493 5.870433 TCAACGATTTTTATGTTAGAGGCGA 59.130 36.000 0.00 0.00 0.00 5.54
426 494 6.102006 TCAACGATTTTTATGTTAGAGGCG 57.898 37.500 0.00 0.00 0.00 5.52
427 495 7.472543 ACATCAACGATTTTTATGTTAGAGGC 58.527 34.615 0.00 0.00 0.00 4.70
428 496 7.846107 CGACATCAACGATTTTTATGTTAGAGG 59.154 37.037 0.00 0.00 31.19 3.69
429 497 7.370836 GCGACATCAACGATTTTTATGTTAGAG 59.629 37.037 0.00 0.00 31.19 2.43
430 498 7.177407 GCGACATCAACGATTTTTATGTTAGA 58.823 34.615 0.00 0.00 31.19 2.10
431 499 6.410914 GGCGACATCAACGATTTTTATGTTAG 59.589 38.462 0.00 0.00 31.19 2.34
432 500 6.092944 AGGCGACATCAACGATTTTTATGTTA 59.907 34.615 0.00 0.00 31.19 2.41
433 501 5.092781 GGCGACATCAACGATTTTTATGTT 58.907 37.500 0.00 0.00 31.19 2.71
434 502 4.394920 AGGCGACATCAACGATTTTTATGT 59.605 37.500 0.00 0.00 33.63 2.29
435 503 4.908736 AGGCGACATCAACGATTTTTATG 58.091 39.130 0.00 0.00 0.00 1.90
436 504 4.876107 AGAGGCGACATCAACGATTTTTAT 59.124 37.500 0.00 0.00 0.00 1.40
437 505 4.250464 AGAGGCGACATCAACGATTTTTA 58.750 39.130 0.00 0.00 0.00 1.52
438 506 3.074412 AGAGGCGACATCAACGATTTTT 58.926 40.909 0.00 0.00 0.00 1.94
439 507 2.699954 AGAGGCGACATCAACGATTTT 58.300 42.857 0.00 0.00 0.00 1.82
440 508 2.386661 AGAGGCGACATCAACGATTT 57.613 45.000 0.00 0.00 0.00 2.17
441 509 3.448686 CTTAGAGGCGACATCAACGATT 58.551 45.455 0.00 0.00 0.00 3.34
442 510 2.223829 CCTTAGAGGCGACATCAACGAT 60.224 50.000 0.00 0.00 0.00 3.73
443 511 1.134367 CCTTAGAGGCGACATCAACGA 59.866 52.381 0.00 0.00 0.00 3.85
444 512 1.135083 ACCTTAGAGGCGACATCAACG 60.135 52.381 0.00 0.00 39.63 4.10
445 513 2.674796 ACCTTAGAGGCGACATCAAC 57.325 50.000 0.00 0.00 39.63 3.18
446 514 4.021229 TCTTACCTTAGAGGCGACATCAA 58.979 43.478 0.00 0.00 39.63 2.57
447 515 3.628008 TCTTACCTTAGAGGCGACATCA 58.372 45.455 0.00 0.00 39.63 3.07
448 516 3.884091 TCTCTTACCTTAGAGGCGACATC 59.116 47.826 0.00 0.00 41.62 3.06
449 517 3.633065 GTCTCTTACCTTAGAGGCGACAT 59.367 47.826 0.00 0.00 41.62 3.06
450 518 3.015327 GTCTCTTACCTTAGAGGCGACA 58.985 50.000 0.00 0.00 41.62 4.35
451 519 3.696281 GTCTCTTACCTTAGAGGCGAC 57.304 52.381 0.00 0.00 41.62 5.19
454 522 5.163530 GGTAGTTGTCTCTTACCTTAGAGGC 60.164 48.000 0.00 0.00 45.12 4.70
455 523 5.360429 GGGTAGTTGTCTCTTACCTTAGAGG 59.640 48.000 0.00 0.00 41.62 3.69
456 524 5.066246 CGGGTAGTTGTCTCTTACCTTAGAG 59.934 48.000 0.00 0.00 42.46 2.43
457 525 4.946157 CGGGTAGTTGTCTCTTACCTTAGA 59.054 45.833 0.53 0.00 0.00 2.10
458 526 4.704057 ACGGGTAGTTGTCTCTTACCTTAG 59.296 45.833 0.53 0.00 0.00 2.18
459 527 4.666512 ACGGGTAGTTGTCTCTTACCTTA 58.333 43.478 0.53 0.00 0.00 2.69
460 528 3.504375 ACGGGTAGTTGTCTCTTACCTT 58.496 45.455 0.53 0.00 0.00 3.50
461 529 3.087781 GACGGGTAGTTGTCTCTTACCT 58.912 50.000 0.53 0.00 32.37 3.08
462 530 2.821969 TGACGGGTAGTTGTCTCTTACC 59.178 50.000 0.00 0.00 36.10 2.85
463 531 4.510038 TTGACGGGTAGTTGTCTCTTAC 57.490 45.455 0.00 0.00 36.10 2.34
464 532 5.534207 TTTTGACGGGTAGTTGTCTCTTA 57.466 39.130 0.00 0.00 36.10 2.10
465 533 4.411256 TTTTGACGGGTAGTTGTCTCTT 57.589 40.909 0.00 0.00 36.10 2.85
466 534 4.411256 TTTTTGACGGGTAGTTGTCTCT 57.589 40.909 0.00 0.00 36.10 3.10
486 554 2.796557 GAGGCTGCCTCTTACCTTTTT 58.203 47.619 35.51 4.84 46.41 1.94
487 555 2.498644 GAGGCTGCCTCTTACCTTTT 57.501 50.000 35.51 5.40 46.41 2.27
497 565 1.289160 TAAGTGAATGGAGGCTGCCT 58.711 50.000 23.64 23.64 36.03 4.75
498 566 2.128771 TTAAGTGAATGGAGGCTGCC 57.871 50.000 11.65 11.65 0.00 4.85
499 567 4.519540 TTTTTAAGTGAATGGAGGCTGC 57.480 40.909 0.00 0.00 0.00 5.25
522 590 6.702723 CCATGCAAAGAGTTGATTCTTTTGAA 59.297 34.615 0.00 0.00 43.08 2.69
523 591 6.218019 CCATGCAAAGAGTTGATTCTTTTGA 58.782 36.000 0.00 0.00 43.08 2.69
524 592 5.107220 GCCATGCAAAGAGTTGATTCTTTTG 60.107 40.000 0.00 0.00 43.08 2.44
525 593 4.992951 GCCATGCAAAGAGTTGATTCTTTT 59.007 37.500 0.00 0.00 43.08 2.27
526 594 4.282703 AGCCATGCAAAGAGTTGATTCTTT 59.717 37.500 0.00 0.00 45.70 2.52
527 595 3.830755 AGCCATGCAAAGAGTTGATTCTT 59.169 39.130 0.00 0.00 39.03 2.52
528 596 3.192844 CAGCCATGCAAAGAGTTGATTCT 59.807 43.478 0.00 0.00 36.83 2.40
529 597 3.508762 CAGCCATGCAAAGAGTTGATTC 58.491 45.455 0.00 0.00 36.83 2.52
530 598 2.232941 CCAGCCATGCAAAGAGTTGATT 59.767 45.455 0.00 0.00 36.83 2.57
531 599 1.822990 CCAGCCATGCAAAGAGTTGAT 59.177 47.619 0.00 0.00 36.83 2.57
532 600 1.250328 CCAGCCATGCAAAGAGTTGA 58.750 50.000 0.00 0.00 36.83 3.18
533 601 0.245539 CCCAGCCATGCAAAGAGTTG 59.754 55.000 0.00 0.00 37.83 3.16
534 602 0.178953 ACCCAGCCATGCAAAGAGTT 60.179 50.000 0.00 0.00 0.00 3.01
535 603 0.178953 AACCCAGCCATGCAAAGAGT 60.179 50.000 0.00 0.00 0.00 3.24
536 604 0.529378 GAACCCAGCCATGCAAAGAG 59.471 55.000 0.00 0.00 0.00 2.85
537 605 0.112995 AGAACCCAGCCATGCAAAGA 59.887 50.000 0.00 0.00 0.00 2.52
538 606 0.529378 GAGAACCCAGCCATGCAAAG 59.471 55.000 0.00 0.00 0.00 2.77
539 607 0.112995 AGAGAACCCAGCCATGCAAA 59.887 50.000 0.00 0.00 0.00 3.68
540 608 0.322816 GAGAGAACCCAGCCATGCAA 60.323 55.000 0.00 0.00 0.00 4.08
541 609 1.300963 GAGAGAACCCAGCCATGCA 59.699 57.895 0.00 0.00 0.00 3.96
542 610 1.028868 GTGAGAGAACCCAGCCATGC 61.029 60.000 0.00 0.00 0.00 4.06
543 611 0.742281 CGTGAGAGAACCCAGCCATG 60.742 60.000 0.00 0.00 0.00 3.66
544 612 1.599047 CGTGAGAGAACCCAGCCAT 59.401 57.895 0.00 0.00 0.00 4.40
545 613 3.059982 CGTGAGAGAACCCAGCCA 58.940 61.111 0.00 0.00 0.00 4.75
546 614 2.435059 GCGTGAGAGAACCCAGCC 60.435 66.667 0.00 0.00 0.00 4.85
547 615 1.078848 ATGCGTGAGAGAACCCAGC 60.079 57.895 0.00 0.00 0.00 4.85
548 616 0.036952 ACATGCGTGAGAGAACCCAG 60.037 55.000 14.17 0.00 0.00 4.45
549 617 0.320683 CACATGCGTGAGAGAACCCA 60.321 55.000 14.17 0.00 46.80 4.51
550 618 2.460330 CACATGCGTGAGAGAACCC 58.540 57.895 14.17 0.00 46.80 4.11
559 627 1.713597 TAGAGCTGTTCACATGCGTG 58.286 50.000 3.82 3.82 45.08 5.34
560 628 2.455674 TTAGAGCTGTTCACATGCGT 57.544 45.000 0.00 0.00 0.00 5.24
561 629 2.738846 AGTTTAGAGCTGTTCACATGCG 59.261 45.455 0.00 0.00 0.00 4.73
562 630 3.748048 TGAGTTTAGAGCTGTTCACATGC 59.252 43.478 0.00 0.00 0.00 4.06
563 631 5.163784 CCATGAGTTTAGAGCTGTTCACATG 60.164 44.000 0.00 2.70 33.61 3.21
570 638 3.445008 TCCTCCATGAGTTTAGAGCTGT 58.555 45.455 0.00 0.00 0.00 4.40
571 639 4.478206 TTCCTCCATGAGTTTAGAGCTG 57.522 45.455 0.00 0.00 0.00 4.24
572 640 5.707066 AATTCCTCCATGAGTTTAGAGCT 57.293 39.130 0.00 0.00 0.00 4.09
573 641 6.587273 AGTAATTCCTCCATGAGTTTAGAGC 58.413 40.000 0.00 0.00 0.00 4.09
591 659 9.802039 TCCCAGTCAACAAGTAAATAAGTAATT 57.198 29.630 0.00 0.00 0.00 1.40
596 664 6.238648 AGGTCCCAGTCAACAAGTAAATAAG 58.761 40.000 0.00 0.00 0.00 1.73
599 667 4.724279 AGGTCCCAGTCAACAAGTAAAT 57.276 40.909 0.00 0.00 0.00 1.40
600 668 4.504340 GCTAGGTCCCAGTCAACAAGTAAA 60.504 45.833 0.00 0.00 0.00 2.01
601 669 3.007614 GCTAGGTCCCAGTCAACAAGTAA 59.992 47.826 0.00 0.00 0.00 2.24
602 670 2.565834 GCTAGGTCCCAGTCAACAAGTA 59.434 50.000 0.00 0.00 0.00 2.24
604 672 1.625818 AGCTAGGTCCCAGTCAACAAG 59.374 52.381 0.00 0.00 0.00 3.16
605 673 1.729586 AGCTAGGTCCCAGTCAACAA 58.270 50.000 0.00 0.00 0.00 2.83
607 675 3.097614 TCTAAGCTAGGTCCCAGTCAAC 58.902 50.000 0.00 0.00 0.00 3.18
608 676 3.097614 GTCTAAGCTAGGTCCCAGTCAA 58.902 50.000 0.00 0.00 0.00 3.18
609 677 2.042569 TGTCTAAGCTAGGTCCCAGTCA 59.957 50.000 0.00 0.00 0.00 3.41
610 678 2.427812 GTGTCTAAGCTAGGTCCCAGTC 59.572 54.545 0.00 0.00 0.00 3.51
611 679 2.043252 AGTGTCTAAGCTAGGTCCCAGT 59.957 50.000 0.00 0.00 0.00 4.00
613 681 2.623502 GGAGTGTCTAAGCTAGGTCCCA 60.624 54.545 0.00 0.00 0.00 4.37
615 683 1.677052 CGGAGTGTCTAAGCTAGGTCC 59.323 57.143 0.00 0.00 0.00 4.46
616 684 2.367486 ACGGAGTGTCTAAGCTAGGTC 58.633 52.381 0.00 0.00 42.51 3.85
631 699 1.396301 GCTGAGCTGAAAATCACGGAG 59.604 52.381 0.00 0.00 0.00 4.63
632 700 1.442769 GCTGAGCTGAAAATCACGGA 58.557 50.000 0.00 0.00 0.00 4.69
633 701 0.095935 CGCTGAGCTGAAAATCACGG 59.904 55.000 1.78 0.00 0.00 4.94
634 702 0.519999 GCGCTGAGCTGAAAATCACG 60.520 55.000 1.78 0.00 44.04 4.35
635 703 3.302968 GCGCTGAGCTGAAAATCAC 57.697 52.632 1.78 0.00 44.04 3.06
645 713 1.882167 CTAAGCTGAGGCGCTGAGC 60.882 63.158 7.64 12.49 40.88 4.26
646 714 0.248990 CTCTAAGCTGAGGCGCTGAG 60.249 60.000 7.64 1.53 44.37 3.35
647 715 1.670949 CCTCTAAGCTGAGGCGCTGA 61.671 60.000 7.64 0.00 45.84 4.26
648 716 1.227205 CCTCTAAGCTGAGGCGCTG 60.227 63.158 7.64 0.00 45.84 5.18
649 717 3.215245 CCTCTAAGCTGAGGCGCT 58.785 61.111 7.64 0.00 45.84 5.92
654 722 1.203523 ACGTGAAGCCTCTAAGCTGAG 59.796 52.381 0.00 0.00 44.11 3.35
655 723 1.067565 CACGTGAAGCCTCTAAGCTGA 60.068 52.381 10.90 0.00 44.11 4.26
656 724 1.354040 CACGTGAAGCCTCTAAGCTG 58.646 55.000 10.90 0.00 44.11 4.24
658 726 0.741221 CCCACGTGAAGCCTCTAAGC 60.741 60.000 19.30 0.00 0.00 3.09
659 727 0.608640 ACCCACGTGAAGCCTCTAAG 59.391 55.000 19.30 0.00 0.00 2.18
660 728 0.606604 GACCCACGTGAAGCCTCTAA 59.393 55.000 19.30 0.00 0.00 2.10
661 729 1.255667 GGACCCACGTGAAGCCTCTA 61.256 60.000 19.30 0.00 0.00 2.43
662 730 2.584391 GGACCCACGTGAAGCCTCT 61.584 63.158 19.30 0.00 0.00 3.69
663 731 2.047179 GGACCCACGTGAAGCCTC 60.047 66.667 19.30 3.37 0.00 4.70
664 732 3.637273 GGGACCCACGTGAAGCCT 61.637 66.667 19.30 0.00 0.00 4.58
665 733 3.901797 CTGGGACCCACGTGAAGCC 62.902 68.421 19.30 14.10 0.00 4.35
666 734 2.358737 CTGGGACCCACGTGAAGC 60.359 66.667 19.30 5.00 0.00 3.86
667 735 2.358737 GCTGGGACCCACGTGAAG 60.359 66.667 19.30 10.70 0.00 3.02
668 736 1.122632 TAAGCTGGGACCCACGTGAA 61.123 55.000 19.30 0.00 0.00 3.18
669 737 1.534476 TAAGCTGGGACCCACGTGA 60.534 57.895 19.30 0.00 0.00 4.35
670 738 1.079127 CTAAGCTGGGACCCACGTG 60.079 63.158 9.95 9.08 0.00 4.49
671 739 1.229082 TCTAAGCTGGGACCCACGT 60.229 57.895 9.95 7.88 0.00 4.49
672 740 1.517832 CTCTAAGCTGGGACCCACG 59.482 63.158 9.95 7.38 0.00 4.94
673 741 1.908483 CCTCTAAGCTGGGACCCAC 59.092 63.158 9.95 7.07 0.00 4.61
674 742 1.995626 GCCTCTAAGCTGGGACCCA 60.996 63.158 14.08 14.08 0.00 4.51
675 743 1.977293 CTGCCTCTAAGCTGGGACCC 61.977 65.000 2.45 2.45 0.00 4.46
676 744 1.524482 CTGCCTCTAAGCTGGGACC 59.476 63.158 0.00 0.00 0.00 4.46
677 745 1.153269 GCTGCCTCTAAGCTGGGAC 60.153 63.158 0.00 0.00 37.69 4.46
678 746 0.984961 ATGCTGCCTCTAAGCTGGGA 60.985 55.000 0.00 0.00 41.42 4.37
679 747 0.534652 GATGCTGCCTCTAAGCTGGG 60.535 60.000 0.00 0.00 41.42 4.45
680 748 0.879400 CGATGCTGCCTCTAAGCTGG 60.879 60.000 0.00 0.00 41.42 4.85
681 749 1.497223 GCGATGCTGCCTCTAAGCTG 61.497 60.000 0.00 0.00 41.42 4.24
682 750 1.227497 GCGATGCTGCCTCTAAGCT 60.227 57.895 0.00 0.00 41.42 3.74
683 751 3.328189 GCGATGCTGCCTCTAAGC 58.672 61.111 0.00 0.00 41.22 3.09
691 759 2.747460 TGTTGGAGGCGATGCTGC 60.747 61.111 0.00 0.00 0.00 5.25
692 760 1.672030 TGTGTTGGAGGCGATGCTG 60.672 57.895 0.00 0.00 0.00 4.41
693 761 1.672356 GTGTGTTGGAGGCGATGCT 60.672 57.895 0.00 0.00 0.00 3.79
694 762 1.672356 AGTGTGTTGGAGGCGATGC 60.672 57.895 0.00 0.00 0.00 3.91
695 763 1.915614 GCAGTGTGTTGGAGGCGATG 61.916 60.000 0.00 0.00 0.00 3.84
696 764 1.672356 GCAGTGTGTTGGAGGCGAT 60.672 57.895 0.00 0.00 0.00 4.58
697 765 2.280797 GCAGTGTGTTGGAGGCGA 60.281 61.111 0.00 0.00 0.00 5.54
698 766 2.281070 AGCAGTGTGTTGGAGGCG 60.281 61.111 0.00 0.00 0.00 5.52
699 767 0.607489 ATCAGCAGTGTGTTGGAGGC 60.607 55.000 0.00 0.00 0.00 4.70
700 768 1.162698 CATCAGCAGTGTGTTGGAGG 58.837 55.000 0.00 0.00 0.00 4.30
701 769 0.520404 GCATCAGCAGTGTGTTGGAG 59.480 55.000 0.00 0.00 41.58 3.86
702 770 0.890542 GGCATCAGCAGTGTGTTGGA 60.891 55.000 0.00 0.00 44.61 3.53
703 771 1.582968 GGCATCAGCAGTGTGTTGG 59.417 57.895 0.00 0.00 44.61 3.77
704 772 0.892358 AGGGCATCAGCAGTGTGTTG 60.892 55.000 0.00 0.00 44.61 3.33
705 773 0.607489 GAGGGCATCAGCAGTGTGTT 60.607 55.000 0.00 0.00 44.61 3.32
706 774 1.002868 GAGGGCATCAGCAGTGTGT 60.003 57.895 0.00 0.00 44.61 3.72
707 775 1.002990 TGAGGGCATCAGCAGTGTG 60.003 57.895 0.00 0.00 44.61 3.82
708 776 3.487211 TGAGGGCATCAGCAGTGT 58.513 55.556 0.00 0.00 44.61 3.55
715 783 1.278537 TCATGTCACTGAGGGCATCA 58.721 50.000 0.46 0.46 36.21 3.07
716 784 2.408271 TTCATGTCACTGAGGGCATC 57.592 50.000 0.00 0.00 0.00 3.91
717 785 2.240414 TCATTCATGTCACTGAGGGCAT 59.760 45.455 0.00 0.00 0.00 4.40
718 786 1.629861 TCATTCATGTCACTGAGGGCA 59.370 47.619 0.00 0.00 0.00 5.36
719 787 2.408271 TCATTCATGTCACTGAGGGC 57.592 50.000 0.00 0.00 0.00 5.19
720 788 2.674852 CGTTCATTCATGTCACTGAGGG 59.325 50.000 0.00 0.00 0.00 4.30
721 789 3.588955 TCGTTCATTCATGTCACTGAGG 58.411 45.455 0.00 0.00 0.00 3.86
722 790 3.061831 GCTCGTTCATTCATGTCACTGAG 59.938 47.826 0.00 0.00 0.00 3.35
723 791 2.995939 GCTCGTTCATTCATGTCACTGA 59.004 45.455 0.00 0.00 0.00 3.41
724 792 2.998670 AGCTCGTTCATTCATGTCACTG 59.001 45.455 0.00 0.00 0.00 3.66
725 793 3.056250 AGAGCTCGTTCATTCATGTCACT 60.056 43.478 8.37 0.00 0.00 3.41
726 794 3.257393 AGAGCTCGTTCATTCATGTCAC 58.743 45.455 8.37 0.00 0.00 3.67
727 795 3.599730 AGAGCTCGTTCATTCATGTCA 57.400 42.857 8.37 0.00 0.00 3.58
728 796 6.408858 TTTTAGAGCTCGTTCATTCATGTC 57.591 37.500 8.37 0.00 0.00 3.06
729 797 6.801539 TTTTTAGAGCTCGTTCATTCATGT 57.198 33.333 8.37 0.00 0.00 3.21
760 845 2.290450 CCGTTTTGGTAAAGGGCCTCTA 60.290 50.000 6.46 0.00 41.02 2.43
786 898 3.489416 GGCGACATTGTTTGTTTCTTTCC 59.511 43.478 0.00 0.00 39.18 3.13
947 1059 8.668510 TTTGCTGCATTTTACTTTTCCAATTA 57.331 26.923 1.84 0.00 0.00 1.40
1206 1321 4.003788 CCGTTGAGGCGTGACCCT 62.004 66.667 0.00 0.00 40.58 4.34
1219 1334 3.308705 GGTGGGGTCGACTCCGTT 61.309 66.667 28.89 0.00 37.05 4.44
1590 1708 0.736325 CCGCCAGGAACACGAAGTAG 60.736 60.000 0.00 0.00 38.46 2.57
1872 1990 4.588899 AGATGATCGGTGTTGAATTCCAA 58.411 39.130 2.27 0.00 0.00 3.53
1873 1991 4.220693 AGATGATCGGTGTTGAATTCCA 57.779 40.909 2.27 0.00 0.00 3.53
1885 2003 7.642978 GTGATTGAGAATTGAAAAGATGATCGG 59.357 37.037 0.00 0.00 0.00 4.18
1898 2016 3.503891 TGCATTGCGTGATTGAGAATTG 58.496 40.909 3.84 0.00 0.00 2.32
1920 2044 5.872635 TCAGATTTCAAAGATGAACGATGC 58.127 37.500 0.00 0.00 45.01 3.91
1935 2059 5.684626 GCCAATTCACGAATCATCAGATTTC 59.315 40.000 0.00 0.00 44.30 2.17
1945 2069 2.456989 CTGCATGCCAATTCACGAATC 58.543 47.619 16.68 0.00 0.00 2.52
1946 2070 1.135527 CCTGCATGCCAATTCACGAAT 59.864 47.619 16.68 0.00 0.00 3.34
1947 2071 0.527113 CCTGCATGCCAATTCACGAA 59.473 50.000 16.68 0.00 0.00 3.85
1949 2073 0.099968 CTCCTGCATGCCAATTCACG 59.900 55.000 16.68 0.00 0.00 4.35
1954 2078 2.831742 CCGCTCCTGCATGCCAAT 60.832 61.111 16.68 0.00 39.64 3.16
2424 2556 3.978723 CTCGAGCTGTCCACTGGCG 62.979 68.421 0.00 0.00 0.00 5.69
2428 2560 0.323816 TCCATCTCGAGCTGTCCACT 60.324 55.000 14.70 0.00 0.00 4.00
2483 2615 1.583856 CGTGCATGCTTCGTAGTACTG 59.416 52.381 20.33 0.00 0.00 2.74
2484 2616 1.201647 ACGTGCATGCTTCGTAGTACT 59.798 47.619 28.96 0.00 36.05 2.73
2485 2617 1.625616 ACGTGCATGCTTCGTAGTAC 58.374 50.000 28.96 13.37 36.05 2.73
2486 2618 2.357327 AACGTGCATGCTTCGTAGTA 57.643 45.000 29.73 4.20 36.80 1.82
2487 2619 1.459592 GAAACGTGCATGCTTCGTAGT 59.540 47.619 29.73 23.30 36.80 2.73
2488 2620 1.201921 GGAAACGTGCATGCTTCGTAG 60.202 52.381 29.73 14.41 36.80 3.51
2518 2650 6.078664 ACAATACAGGAGGCTAGCTAATAGT 58.921 40.000 15.72 10.77 33.65 2.12
2519 2651 6.597832 ACAATACAGGAGGCTAGCTAATAG 57.402 41.667 15.72 5.14 34.31 1.73
2540 2672 7.101054 AGCAAGAAACGGATTAACTGTATACA 58.899 34.615 5.25 5.25 37.07 2.29
2574 2706 3.127376 GGCATTATGTATGATGATGCGCA 59.873 43.478 14.96 14.96 42.93 6.09
2595 2727 1.306148 TAGATGTGCCTCTACGACGG 58.694 55.000 0.00 0.00 0.00 4.79
2741 2875 2.417787 GGTTAAATCGCTAGTCACGGGT 60.418 50.000 0.00 0.00 0.00 5.28
2758 2892 1.228533 GGCGGTCAGAAAAACGGTTA 58.771 50.000 0.00 0.00 0.00 2.85
2864 2998 3.827898 CGGTCCGACCAGCTCCTC 61.828 72.222 17.87 0.00 38.47 3.71
3185 3319 1.707427 ACTCCACCAAAGGATGAAGCT 59.293 47.619 0.00 0.00 36.99 3.74
3335 3470 5.218139 CCAAATGCACTTTCTTCTGAACTC 58.782 41.667 0.00 0.00 31.02 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.