Multiple sequence alignment - TraesCS6A01G226600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G226600 chr6A 100.000 5566 0 0 1 5566 426638404 426632839 0.000000e+00 10279.0
1 TraesCS6A01G226600 chr6A 100.000 2773 0 0 5969 8741 426632436 426629664 0.000000e+00 5121.0
2 TraesCS6A01G226600 chr6A 88.904 712 57 12 8040 8741 20868086 20868785 0.000000e+00 857.0
3 TraesCS6A01G226600 chr6A 94.910 334 13 3 2604 2936 65071069 65071399 3.620000e-143 520.0
4 TraesCS6A01G226600 chr6A 90.114 263 21 3 2969 3227 105585831 105585570 3.910000e-88 337.0
5 TraesCS6A01G226600 chr6A 89.734 263 22 3 2969 3227 58765505 58765766 1.820000e-86 331.0
6 TraesCS6A01G226600 chr6A 90.909 44 2 2 7996 8038 51440878 51440836 3.410000e-04 58.4
7 TraesCS6A01G226600 chr6A 85.965 57 3 4 8009 8061 19777535 19777480 1.000000e-03 56.5
8 TraesCS6A01G226600 chr6D 95.646 2687 57 19 2925 5566 294088463 294091134 0.000000e+00 4259.0
9 TraesCS6A01G226600 chr6D 95.532 2104 48 11 5969 8035 294091197 294093291 0.000000e+00 3323.0
10 TraesCS6A01G226600 chr6D 97.571 1482 32 3 905 2383 294086772 294088252 0.000000e+00 2534.0
11 TraesCS6A01G226600 chr6D 97.213 861 22 1 1 859 294085914 294086774 0.000000e+00 1456.0
12 TraesCS6A01G226600 chr6B 95.169 2629 83 19 2970 5566 458579778 458582394 0.000000e+00 4111.0
13 TraesCS6A01G226600 chr6B 94.547 2384 91 15 1 2368 458577420 458579780 0.000000e+00 3646.0
14 TraesCS6A01G226600 chr6B 94.324 1938 57 16 6150 8038 458582732 458584665 0.000000e+00 2920.0
15 TraesCS6A01G226600 chr6B 96.175 183 6 1 5969 6151 458582457 458582638 1.840000e-76 298.0
16 TraesCS6A01G226600 chr6B 95.349 43 1 1 2320 2361 548131148 548131190 5.660000e-07 67.6
17 TraesCS6A01G226600 chr7D 90.858 711 44 11 8039 8741 637696277 637695580 0.000000e+00 933.0
18 TraesCS6A01G226600 chr7D 96.653 239 8 0 2366 2604 539381772 539382010 1.770000e-106 398.0
19 TraesCS6A01G226600 chr7D 96.653 239 7 1 2367 2604 533752367 533752605 6.360000e-106 396.0
20 TraesCS6A01G226600 chr7D 89.695 262 22 3 2969 3226 510610236 510609976 6.540000e-86 329.0
21 TraesCS6A01G226600 chr4A 89.636 714 52 16 8039 8741 616999178 616998476 0.000000e+00 889.0
22 TraesCS6A01G226600 chr4A 98.397 312 4 1 2601 2912 93621678 93621988 1.660000e-151 547.0
23 TraesCS6A01G226600 chr4A 98.382 309 4 1 2604 2912 513328000 513328307 7.720000e-150 542.0
24 TraesCS6A01G226600 chr4A 98.077 312 5 1 2601 2912 546123531 546123841 7.720000e-150 542.0
25 TraesCS6A01G226600 chr4A 97.764 313 6 1 2604 2916 35571658 35571347 9.990000e-149 538.0
26 TraesCS6A01G226600 chr2B 82.275 1055 161 18 806 1839 697587996 697586947 0.000000e+00 889.0
27 TraesCS6A01G226600 chr2B 89.088 724 49 19 8039 8741 26820975 26820261 0.000000e+00 872.0
28 TraesCS6A01G226600 chr2B 83.737 578 71 13 3916 4486 697578018 697577457 7.770000e-145 525.0
29 TraesCS6A01G226600 chr2B 86.520 319 39 3 5076 5391 697576566 697576249 1.810000e-91 348.0
30 TraesCS6A01G226600 chr2B 82.126 207 23 6 4488 4682 697577404 697577200 1.950000e-36 165.0
31 TraesCS6A01G226600 chr2B 85.965 57 4 2 7984 8038 247287866 247287920 3.410000e-04 58.4
32 TraesCS6A01G226600 chr3A 89.762 713 45 16 8039 8741 125831053 125831747 0.000000e+00 887.0
33 TraesCS6A01G226600 chr3A 89.060 713 51 18 8038 8741 423998810 423998116 0.000000e+00 859.0
34 TraesCS6A01G226600 chr3A 98.382 309 3 2 2604 2912 352926702 352926396 7.720000e-150 542.0
35 TraesCS6A01G226600 chr7A 89.385 716 45 22 8039 8741 732857119 732857816 0.000000e+00 872.0
36 TraesCS6A01G226600 chr7A 89.088 724 44 22 8039 8741 732867849 732867140 0.000000e+00 867.0
37 TraesCS6A01G226600 chr7A 90.476 63 5 1 2910 2972 500793615 500793554 2.020000e-11 82.4
38 TraesCS6A01G226600 chr2A 89.106 716 45 21 8039 8741 469639225 469638530 0.000000e+00 859.0
39 TraesCS6A01G226600 chr2A 98.408 314 4 1 2604 2917 468209311 468208999 1.280000e-152 551.0
40 TraesCS6A01G226600 chr2A 84.091 572 66 11 3923 4486 717211672 717211118 6.010000e-146 529.0
41 TraesCS6A01G226600 chr2A 96.234 239 9 0 2366 2604 241962132 241962370 8.230000e-105 392.0
42 TraesCS6A01G226600 chr2A 84.741 367 51 4 5029 5391 717210326 717209961 6.450000e-96 363.0
43 TraesCS6A01G226600 chr2A 82.524 206 22 6 4488 4681 717211065 717210862 1.510000e-37 169.0
44 TraesCS6A01G226600 chr2D 83.207 923 125 16 806 1713 579588895 579587988 0.000000e+00 819.0
45 TraesCS6A01G226600 chr2D 84.083 578 69 13 3916 4486 579586882 579586321 3.590000e-148 536.0
46 TraesCS6A01G226600 chr2D 77.907 946 142 37 6143 7040 579584993 579584067 2.160000e-145 527.0
47 TraesCS6A01G226600 chr2D 97.071 239 7 0 2366 2604 213696994 213697232 3.800000e-108 403.0
48 TraesCS6A01G226600 chr2D 85.205 365 51 3 5029 5391 579585529 579585166 1.070000e-98 372.0
49 TraesCS6A01G226600 chr2D 83.010 206 21 6 4488 4681 579586268 579586065 3.240000e-39 174.0
50 TraesCS6A01G226600 chr2D 95.349 43 1 1 2320 2361 109580038 109579996 5.660000e-07 67.6
51 TraesCS6A01G226600 chr5A 98.083 313 4 1 2602 2914 630123778 630124088 2.150000e-150 544.0
52 TraesCS6A01G226600 chr5A 94.466 253 10 4 2356 2604 549204657 549204405 3.830000e-103 387.0
53 TraesCS6A01G226600 chr5A 90.038 261 21 3 2969 3225 630123829 630124088 5.060000e-87 333.0
54 TraesCS6A01G226600 chr5A 89.961 259 21 3 2969 3223 611029640 611029897 6.540000e-86 329.0
55 TraesCS6A01G226600 chr5A 97.619 42 1 0 2320 2361 290689230 290689189 1.220000e-08 73.1
56 TraesCS6A01G226600 chr5A 97.561 41 1 0 2321 2361 703429636 703429676 4.380000e-08 71.3
57 TraesCS6A01G226600 chr1A 97.764 313 5 2 2601 2912 243434078 243434389 9.990000e-149 538.0
58 TraesCS6A01G226600 chr1A 96.266 241 8 1 2367 2606 420381095 420381335 2.290000e-105 394.0
59 TraesCS6A01G226600 chr1A 96.624 237 8 0 2368 2604 540722868 540723104 2.290000e-105 394.0
60 TraesCS6A01G226600 chr1A 90.000 260 21 3 2969 3224 350489639 350489897 1.820000e-86 331.0
61 TraesCS6A01G226600 chr1A 89.831 59 5 1 2910 2968 225376787 225376844 3.380000e-09 75.0
62 TraesCS6A01G226600 chr1A 91.111 45 0 3 7996 8038 143974498 143974540 3.410000e-04 58.4
63 TraesCS6A01G226600 chr5B 95.868 242 9 1 2366 2606 288645875 288646116 2.960000e-104 390.0
64 TraesCS6A01G226600 chr5B 94.779 249 12 1 2356 2604 69282955 69282708 3.830000e-103 387.0
65 TraesCS6A01G226600 chr3D 91.188 261 18 3 2969 3225 20756314 20756573 5.020000e-92 350.0
66 TraesCS6A01G226600 chr3D 95.918 49 1 1 2925 2973 607358093 607358046 2.620000e-10 78.7
67 TraesCS6A01G226600 chr1B 90.038 261 18 5 2969 3223 446637726 446637984 1.820000e-86 331.0
68 TraesCS6A01G226600 chr5D 86.905 84 6 2 2889 2968 533629299 533629217 1.210000e-13 89.8
69 TraesCS6A01G226600 chr5D 91.111 45 0 3 7996 8038 63687683 63687641 3.410000e-04 58.4
70 TraesCS6A01G226600 chr1D 87.500 80 6 4 2889 2968 374241758 374241833 1.210000e-13 89.8
71 TraesCS6A01G226600 chr1D 94.737 38 2 0 2324 2361 309921381 309921418 9.480000e-05 60.2
72 TraesCS6A01G226600 chr4B 88.889 63 6 1 2910 2972 124746026 124746087 9.410000e-10 76.8
73 TraesCS6A01G226600 chr4B 83.333 84 8 3 2889 2968 649357462 649357543 1.220000e-08 73.1
74 TraesCS6A01G226600 chr4B 90.698 43 4 0 7996 8038 104298779 104298821 3.410000e-04 58.4
75 TraesCS6A01G226600 chr4B 91.111 45 0 3 7996 8038 554675025 554674983 3.410000e-04 58.4
76 TraesCS6A01G226600 chr4D 89.831 59 5 1 2910 2968 303585005 303585062 3.380000e-09 75.0
77 TraesCS6A01G226600 chr4D 80.000 95 10 6 2317 2402 136305797 136305891 2.630000e-05 62.1
78 TraesCS6A01G226600 chr3B 83.529 85 6 4 2889 2968 564376930 564376849 1.220000e-08 73.1
79 TraesCS6A01G226600 chr3B 94.737 38 2 0 2324 2361 749038032 749037995 9.480000e-05 60.2
80 TraesCS6A01G226600 chrUn 91.111 45 0 3 7996 8038 118956921 118956879 3.410000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G226600 chr6A 426629664 426638404 8740 True 7700.000000 10279 100.000000 1 8741 2 chr6A.!!$R4 8740
1 TraesCS6A01G226600 chr6A 20868086 20868785 699 False 857.000000 857 88.904000 8040 8741 1 chr6A.!!$F1 701
2 TraesCS6A01G226600 chr6D 294085914 294093291 7377 False 2893.000000 4259 96.490500 1 8035 4 chr6D.!!$F1 8034
3 TraesCS6A01G226600 chr6B 458577420 458584665 7245 False 2743.750000 4111 95.053750 1 8038 4 chr6B.!!$F2 8037
4 TraesCS6A01G226600 chr7D 637695580 637696277 697 True 933.000000 933 90.858000 8039 8741 1 chr7D.!!$R2 702
5 TraesCS6A01G226600 chr4A 616998476 616999178 702 True 889.000000 889 89.636000 8039 8741 1 chr4A.!!$R2 702
6 TraesCS6A01G226600 chr2B 697586947 697587996 1049 True 889.000000 889 82.275000 806 1839 1 chr2B.!!$R2 1033
7 TraesCS6A01G226600 chr2B 26820261 26820975 714 True 872.000000 872 89.088000 8039 8741 1 chr2B.!!$R1 702
8 TraesCS6A01G226600 chr2B 697576249 697578018 1769 True 346.000000 525 84.127667 3916 5391 3 chr2B.!!$R3 1475
9 TraesCS6A01G226600 chr3A 125831053 125831747 694 False 887.000000 887 89.762000 8039 8741 1 chr3A.!!$F1 702
10 TraesCS6A01G226600 chr3A 423998116 423998810 694 True 859.000000 859 89.060000 8038 8741 1 chr3A.!!$R2 703
11 TraesCS6A01G226600 chr7A 732857119 732857816 697 False 872.000000 872 89.385000 8039 8741 1 chr7A.!!$F1 702
12 TraesCS6A01G226600 chr7A 732867140 732867849 709 True 867.000000 867 89.088000 8039 8741 1 chr7A.!!$R2 702
13 TraesCS6A01G226600 chr2A 469638530 469639225 695 True 859.000000 859 89.106000 8039 8741 1 chr2A.!!$R2 702
14 TraesCS6A01G226600 chr2A 717209961 717211672 1711 True 353.666667 529 83.785333 3923 5391 3 chr2A.!!$R3 1468
15 TraesCS6A01G226600 chr2D 579584067 579588895 4828 True 485.600000 819 82.682400 806 7040 5 chr2D.!!$R2 6234

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
474 475 0.107848 ATCCGCCTTCTAACCAACCG 60.108 55.000 0.00 0.00 0.00 4.44 F
1457 1471 0.240411 CAAGAAGCAGGCAAGCTGTC 59.760 55.000 5.21 5.84 45.89 3.51 F
2032 2105 1.202794 TGCCAGCACTTGATTGAGTCA 60.203 47.619 0.00 0.00 34.25 3.41 F
2388 2469 1.285078 GCCTCCTTTGGTTCATAGGGT 59.715 52.381 4.94 0.00 34.20 4.34 F
2911 2994 0.113190 CTCCAAACCAAAGGAGGCCT 59.887 55.000 3.86 3.86 46.11 5.19 F
2912 2995 1.354368 CTCCAAACCAAAGGAGGCCTA 59.646 52.381 4.42 0.00 46.11 3.93 F
3724 3872 1.415659 AGCAGCACAGACTCTTCAACT 59.584 47.619 0.00 0.00 0.00 3.16 F
4038 4186 2.034124 AGTGTTGCAGCCAAATGAAGT 58.966 42.857 0.00 0.00 31.68 3.01 F
4102 4250 2.271800 GGTGTATGCTCTTCTGGTTCG 58.728 52.381 0.00 0.00 0.00 3.95 F
5496 6044 5.883115 TCTGGTTTTGTGTGATTAGACAACA 59.117 36.000 0.00 0.00 39.48 3.33 F
6612 7275 1.077716 GACATGGGTAGGTGGCACC 60.078 63.158 29.32 29.32 38.99 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1611 1625 0.325296 TAGCCAGTGGGGTCTCGAAT 60.325 55.000 12.15 0.0 45.66 3.34 R
2892 2975 0.113190 AGGCCTCCTTTGGTTTGGAG 59.887 55.000 0.00 0.0 46.91 3.86 R
2893 2976 1.451449 TAGGCCTCCTTTGGTTTGGA 58.549 50.000 9.68 0.0 34.61 3.53 R
4038 4186 0.687920 TGGCATACACGAGGAACCAA 59.312 50.000 0.00 0.0 0.00 3.67 R
4227 4381 2.124278 GGGGCGGAAGAATCCCAC 60.124 66.667 0.00 0.0 43.37 4.61 R
4852 5368 3.425193 CGCCATTTTCACAGCTTGTTTAC 59.575 43.478 0.00 0.0 0.00 2.01 R
5496 6044 2.790433 ACTCCAAACGGCATGTATTGT 58.210 42.857 0.00 0.0 0.00 2.71 R
5997 6545 1.084289 GGTGGCCGTTCATCAGTTAC 58.916 55.000 0.00 0.0 0.00 2.50 R
6076 6624 5.470098 GCAAGATTTAGGAGTGTTCACTTCA 59.530 40.000 12.92 0.0 0.00 3.02 R
7229 7922 2.431419 TGGTTTCAGTTCAGTACCACGA 59.569 45.455 0.00 0.0 34.13 4.35 R
8464 9258 0.109964 ACACACACACACGCAACAAC 60.110 50.000 0.00 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
228 229 6.886459 AGGACTTCACAATTGCTGTATGTATT 59.114 34.615 5.05 0.00 36.10 1.89
252 253 1.376037 GTGCTCTAGTGGGTGGCAC 60.376 63.158 9.70 9.70 44.53 5.01
267 268 3.356290 GTGGCACTCTTTCATGGGTATT 58.644 45.455 11.13 0.00 0.00 1.89
474 475 0.107848 ATCCGCCTTCTAACCAACCG 60.108 55.000 0.00 0.00 0.00 4.44
476 477 0.604511 CCGCCTTCTAACCAACCGTT 60.605 55.000 0.00 0.00 38.57 4.44
479 480 1.892209 CCTTCTAACCAACCGTTGCT 58.108 50.000 5.68 0.00 35.79 3.91
491 492 1.291877 CCGTTGCTGTAGTGCTGGTC 61.292 60.000 0.00 0.00 0.00 4.02
642 643 1.307355 TGATGATGGTGCAAGTGCCG 61.307 55.000 0.00 0.00 41.18 5.69
727 730 1.264749 TACAGCGTCCTCCAATGGCT 61.265 55.000 0.00 0.00 0.00 4.75
1020 1034 6.208644 CAGGATGTCATCTTCAAACGTTTTT 58.791 36.000 11.66 0.00 0.00 1.94
1137 1151 7.857456 TGTATGATTACAACTGGGAGTACATT 58.143 34.615 0.00 0.00 35.40 2.71
1205 1219 4.636206 GCCAGATCCCAAAGTACAGTTTAG 59.364 45.833 0.00 0.00 0.00 1.85
1294 1308 6.368779 TGCTACTACTTTTGGTACAGGAAT 57.631 37.500 0.00 0.00 42.39 3.01
1295 1309 6.775708 TGCTACTACTTTTGGTACAGGAATT 58.224 36.000 0.00 0.00 42.39 2.17
1457 1471 0.240411 CAAGAAGCAGGCAAGCTGTC 59.760 55.000 5.21 5.84 45.89 3.51
1845 1871 3.690628 GGGATTGCAAAATTTCCACCATG 59.309 43.478 16.62 0.00 0.00 3.66
1847 1873 5.002516 GGATTGCAAAATTTCCACCATGAA 58.997 37.500 1.71 0.00 0.00 2.57
2020 2093 1.451028 GATCCTGAGGTGCCAGCAC 60.451 63.158 14.39 14.39 45.49 4.40
2032 2105 1.202794 TGCCAGCACTTGATTGAGTCA 60.203 47.619 0.00 0.00 34.25 3.41
2074 2147 3.052082 CAGGTGGTTGCTGGAGCG 61.052 66.667 0.00 0.00 45.83 5.03
2136 2209 2.578021 TCCCAGCTTAGATCTTGCCTTT 59.422 45.455 0.00 0.00 0.00 3.11
2168 2244 8.687242 CCCTTTTAGTTTTCTCTTTGTTCTTCT 58.313 33.333 0.00 0.00 0.00 2.85
2265 2344 4.829064 TTACTTGTGACATTTCAGTGCC 57.171 40.909 0.00 0.00 30.10 5.01
2383 2464 1.992557 TGTAGGCCTCCTTTGGTTCAT 59.007 47.619 9.68 0.00 34.61 2.57
2384 2465 3.186283 TGTAGGCCTCCTTTGGTTCATA 58.814 45.455 9.68 0.00 34.61 2.15
2385 2466 3.199946 TGTAGGCCTCCTTTGGTTCATAG 59.800 47.826 9.68 0.00 34.61 2.23
2386 2467 1.566231 AGGCCTCCTTTGGTTCATAGG 59.434 52.381 0.00 0.00 34.61 2.57
2387 2468 1.410224 GGCCTCCTTTGGTTCATAGGG 60.410 57.143 0.00 0.00 34.20 3.53
2388 2469 1.285078 GCCTCCTTTGGTTCATAGGGT 59.715 52.381 4.94 0.00 34.20 4.34
2389 2470 2.508300 GCCTCCTTTGGTTCATAGGGTA 59.492 50.000 4.94 0.00 34.20 3.69
2390 2471 3.433740 GCCTCCTTTGGTTCATAGGGTAG 60.434 52.174 4.94 0.00 34.20 3.18
2391 2472 3.136626 CCTCCTTTGGTTCATAGGGTAGG 59.863 52.174 4.94 2.50 34.20 3.18
2392 2473 4.037927 CTCCTTTGGTTCATAGGGTAGGA 58.962 47.826 4.94 0.00 34.20 2.94
2393 2474 4.440808 TCCTTTGGTTCATAGGGTAGGAA 58.559 43.478 4.94 0.00 34.20 3.36
2394 2475 4.853276 TCCTTTGGTTCATAGGGTAGGAAA 59.147 41.667 4.94 0.00 34.20 3.13
2395 2476 5.313772 TCCTTTGGTTCATAGGGTAGGAAAA 59.686 40.000 4.94 0.00 34.20 2.29
2396 2477 6.011096 TCCTTTGGTTCATAGGGTAGGAAAAT 60.011 38.462 4.94 0.00 34.20 1.82
2397 2478 6.321435 CCTTTGGTTCATAGGGTAGGAAAATC 59.679 42.308 0.00 0.00 30.68 2.17
2398 2479 5.031066 TGGTTCATAGGGTAGGAAAATCG 57.969 43.478 0.00 0.00 29.56 3.34
2399 2480 4.472108 TGGTTCATAGGGTAGGAAAATCGT 59.528 41.667 0.00 0.00 29.56 3.73
2400 2481 5.662208 TGGTTCATAGGGTAGGAAAATCGTA 59.338 40.000 0.00 0.00 29.56 3.43
2401 2482 6.183360 TGGTTCATAGGGTAGGAAAATCGTAG 60.183 42.308 0.00 0.00 29.56 3.51
2402 2483 6.221659 GTTCATAGGGTAGGAAAATCGTAGG 58.778 44.000 0.00 0.00 29.56 3.18
2403 2484 5.708544 TCATAGGGTAGGAAAATCGTAGGA 58.291 41.667 0.00 0.00 0.00 2.94
2404 2485 6.138263 TCATAGGGTAGGAAAATCGTAGGAA 58.862 40.000 0.00 0.00 0.00 3.36
2405 2486 6.785963 TCATAGGGTAGGAAAATCGTAGGAAT 59.214 38.462 0.00 0.00 0.00 3.01
2406 2487 7.951806 TCATAGGGTAGGAAAATCGTAGGAATA 59.048 37.037 0.00 0.00 0.00 1.75
2407 2488 6.667558 AGGGTAGGAAAATCGTAGGAATAG 57.332 41.667 0.00 0.00 0.00 1.73
2408 2489 5.543020 AGGGTAGGAAAATCGTAGGAATAGG 59.457 44.000 0.00 0.00 0.00 2.57
2409 2490 5.541484 GGGTAGGAAAATCGTAGGAATAGGA 59.459 44.000 0.00 0.00 0.00 2.94
2410 2491 6.042437 GGGTAGGAAAATCGTAGGAATAGGAA 59.958 42.308 0.00 0.00 0.00 3.36
2411 2492 7.419403 GGGTAGGAAAATCGTAGGAATAGGAAA 60.419 40.741 0.00 0.00 0.00 3.13
2412 2493 7.656542 GGTAGGAAAATCGTAGGAATAGGAAAG 59.343 40.741 0.00 0.00 0.00 2.62
2413 2494 7.196637 AGGAAAATCGTAGGAATAGGAAAGT 57.803 36.000 0.00 0.00 0.00 2.66
2414 2495 7.273712 AGGAAAATCGTAGGAATAGGAAAGTC 58.726 38.462 0.00 0.00 0.00 3.01
2415 2496 7.046033 GGAAAATCGTAGGAATAGGAAAGTCA 58.954 38.462 0.00 0.00 0.00 3.41
2416 2497 7.011202 GGAAAATCGTAGGAATAGGAAAGTCAC 59.989 40.741 0.00 0.00 0.00 3.67
2417 2498 6.540438 AATCGTAGGAATAGGAAAGTCACA 57.460 37.500 0.00 0.00 0.00 3.58
2418 2499 5.578005 TCGTAGGAATAGGAAAGTCACAG 57.422 43.478 0.00 0.00 0.00 3.66
2419 2500 4.401519 TCGTAGGAATAGGAAAGTCACAGG 59.598 45.833 0.00 0.00 0.00 4.00
2420 2501 4.401519 CGTAGGAATAGGAAAGTCACAGGA 59.598 45.833 0.00 0.00 0.00 3.86
2591 2674 9.190317 AGGAATAGGATTTCATTCTTACAAACC 57.810 33.333 0.00 0.00 32.77 3.27
2592 2675 8.966868 GGAATAGGATTTCATTCTTACAAACCA 58.033 33.333 0.00 0.00 32.77 3.67
2596 2679 7.670364 AGGATTTCATTCTTACAAACCAAAGG 58.330 34.615 0.00 0.00 0.00 3.11
2597 2680 6.873605 GGATTTCATTCTTACAAACCAAAGGG 59.126 38.462 0.00 0.00 41.29 3.95
2598 2681 4.864704 TCATTCTTACAAACCAAAGGGC 57.135 40.909 0.00 0.00 37.90 5.19
2599 2682 4.479158 TCATTCTTACAAACCAAAGGGCT 58.521 39.130 0.00 0.00 37.90 5.19
2600 2683 4.522789 TCATTCTTACAAACCAAAGGGCTC 59.477 41.667 0.00 0.00 37.90 4.70
2601 2684 3.876309 TCTTACAAACCAAAGGGCTCT 57.124 42.857 0.00 0.00 37.90 4.09
2602 2685 4.986054 TCTTACAAACCAAAGGGCTCTA 57.014 40.909 0.00 0.00 37.90 2.43
2603 2686 5.313280 TCTTACAAACCAAAGGGCTCTAA 57.687 39.130 0.00 0.00 37.90 2.10
2604 2687 5.313712 TCTTACAAACCAAAGGGCTCTAAG 58.686 41.667 0.00 0.00 37.90 2.18
2605 2688 2.876581 ACAAACCAAAGGGCTCTAAGG 58.123 47.619 2.77 2.77 37.90 2.69
2606 2689 1.546029 CAAACCAAAGGGCTCTAAGGC 59.454 52.381 4.20 0.00 40.51 4.35
2616 2699 2.498644 GCTCTAAGGCCTCTTTTGGT 57.501 50.000 5.23 0.00 34.59 3.67
2617 2700 2.796557 GCTCTAAGGCCTCTTTTGGTT 58.203 47.619 5.23 0.00 34.59 3.67
2618 2701 2.750166 GCTCTAAGGCCTCTTTTGGTTC 59.250 50.000 5.23 0.00 34.59 3.62
2619 2702 3.810743 GCTCTAAGGCCTCTTTTGGTTCA 60.811 47.826 5.23 0.00 34.59 3.18
2620 2703 4.593956 CTCTAAGGCCTCTTTTGGTTCAT 58.406 43.478 5.23 0.00 34.59 2.57
2621 2704 5.745227 CTCTAAGGCCTCTTTTGGTTCATA 58.255 41.667 5.23 0.00 34.59 2.15
2622 2705 5.745227 TCTAAGGCCTCTTTTGGTTCATAG 58.255 41.667 5.23 0.00 34.59 2.23
2623 2706 3.372440 AGGCCTCTTTTGGTTCATAGG 57.628 47.619 0.00 0.00 0.00 2.57
2624 2707 2.919602 AGGCCTCTTTTGGTTCATAGGA 59.080 45.455 0.00 0.00 0.00 2.94
2625 2708 3.529319 AGGCCTCTTTTGGTTCATAGGAT 59.471 43.478 0.00 0.00 0.00 3.24
2626 2709 4.726825 AGGCCTCTTTTGGTTCATAGGATA 59.273 41.667 0.00 0.00 0.00 2.59
2627 2710 5.066593 GGCCTCTTTTGGTTCATAGGATAG 58.933 45.833 0.00 0.00 0.00 2.08
2628 2711 5.066593 GCCTCTTTTGGTTCATAGGATAGG 58.933 45.833 0.00 0.00 0.00 2.57
2629 2712 5.163195 GCCTCTTTTGGTTCATAGGATAGGA 60.163 44.000 0.00 0.00 0.00 2.94
2630 2713 6.466470 GCCTCTTTTGGTTCATAGGATAGGAT 60.466 42.308 0.00 0.00 28.27 3.24
2631 2714 7.521669 CCTCTTTTGGTTCATAGGATAGGATT 58.478 38.462 0.00 0.00 28.27 3.01
2632 2715 8.660435 CCTCTTTTGGTTCATAGGATAGGATTA 58.340 37.037 0.00 0.00 28.27 1.75
2635 2718 9.155975 CTTTTGGTTCATAGGATAGGATTATCG 57.844 37.037 0.00 0.00 37.20 2.92
2636 2719 7.792364 TTGGTTCATAGGATAGGATTATCGT 57.208 36.000 0.00 0.00 37.20 3.73
2637 2720 8.888836 TTGGTTCATAGGATAGGATTATCGTA 57.111 34.615 0.00 0.00 39.58 3.43
2638 2721 8.521170 TGGTTCATAGGATAGGATTATCGTAG 57.479 38.462 1.23 0.00 39.00 3.51
2639 2722 7.560262 TGGTTCATAGGATAGGATTATCGTAGG 59.440 40.741 1.23 3.78 39.00 3.18
2640 2723 7.778853 GGTTCATAGGATAGGATTATCGTAGGA 59.221 40.741 7.24 7.24 41.67 2.94
2641 2724 9.186837 GTTCATAGGATAGGATTATCGTAGGAA 57.813 37.037 14.87 14.87 45.40 3.36
2642 2725 9.937876 TTCATAGGATAGGATTATCGTAGGAAT 57.062 33.333 14.87 0.00 44.20 3.01
2646 2729 8.115490 AGGATAGGATTATCGTAGGAATAGGA 57.885 38.462 1.23 0.00 37.20 2.94
2647 2730 8.566979 AGGATAGGATTATCGTAGGAATAGGAA 58.433 37.037 1.23 0.00 37.20 3.36
2648 2731 9.369672 GGATAGGATTATCGTAGGAATAGGAAT 57.630 37.037 1.23 0.00 37.20 3.01
2652 2735 9.726438 AGGATTATCGTAGGAATAGGAATTTTG 57.274 33.333 0.00 0.00 0.00 2.44
2653 2736 9.503399 GGATTATCGTAGGAATAGGAATTTTGT 57.497 33.333 0.00 0.00 0.00 2.83
2656 2739 9.991906 TTATCGTAGGAATAGGAATTTTGTAGG 57.008 33.333 0.00 0.00 0.00 3.18
2657 2740 7.664552 TCGTAGGAATAGGAATTTTGTAGGA 57.335 36.000 0.00 0.00 0.00 2.94
2658 2741 8.081517 TCGTAGGAATAGGAATTTTGTAGGAA 57.918 34.615 0.00 0.00 0.00 3.36
2659 2742 8.542080 TCGTAGGAATAGGAATTTTGTAGGAAA 58.458 33.333 0.00 0.00 0.00 3.13
2660 2743 9.338622 CGTAGGAATAGGAATTTTGTAGGAAAT 57.661 33.333 0.00 0.00 0.00 2.17
2663 2746 9.413734 AGGAATAGGAATTTTGTAGGAAATGAG 57.586 33.333 0.00 0.00 30.06 2.90
2664 2747 9.408648 GGAATAGGAATTTTGTAGGAAATGAGA 57.591 33.333 0.00 0.00 30.06 3.27
2668 2751 8.286191 AGGAATTTTGTAGGAAATGAGATGAC 57.714 34.615 0.00 0.00 30.06 3.06
2669 2752 7.890127 AGGAATTTTGTAGGAAATGAGATGACA 59.110 33.333 0.00 0.00 30.06 3.58
2670 2753 8.689972 GGAATTTTGTAGGAAATGAGATGACAT 58.310 33.333 0.00 0.00 30.06 3.06
2671 2754 9.512435 GAATTTTGTAGGAAATGAGATGACATG 57.488 33.333 0.00 0.00 30.06 3.21
2672 2755 8.585471 ATTTTGTAGGAAATGAGATGACATGT 57.415 30.769 0.00 0.00 0.00 3.21
2673 2756 9.685276 ATTTTGTAGGAAATGAGATGACATGTA 57.315 29.630 0.00 0.00 0.00 2.29
2674 2757 9.685276 TTTTGTAGGAAATGAGATGACATGTAT 57.315 29.630 0.00 0.00 0.00 2.29
2675 2758 8.893219 TTGTAGGAAATGAGATGACATGTATC 57.107 34.615 0.00 2.87 0.00 2.24
2676 2759 8.255111 TGTAGGAAATGAGATGACATGTATCT 57.745 34.615 14.05 14.05 37.59 1.98
2677 2760 8.363390 TGTAGGAAATGAGATGACATGTATCTC 58.637 37.037 24.04 24.04 46.82 2.75
2687 2770 9.368674 GAGATGACATGTATCTCAAATCCTATG 57.631 37.037 24.95 0.00 46.22 2.23
2688 2771 9.097946 AGATGACATGTATCTCAAATCCTATGA 57.902 33.333 0.00 0.00 29.05 2.15
2689 2772 9.368674 GATGACATGTATCTCAAATCCTATGAG 57.631 37.037 0.00 0.00 44.53 2.90
2690 2773 8.255111 TGACATGTATCTCAAATCCTATGAGT 57.745 34.615 0.00 0.00 43.77 3.41
2691 2774 9.367160 TGACATGTATCTCAAATCCTATGAGTA 57.633 33.333 0.00 0.00 43.77 2.59
2692 2775 9.853555 GACATGTATCTCAAATCCTATGAGTAG 57.146 37.037 0.00 0.00 43.77 2.57
2707 2790 7.747155 CTATGAGTAGGAATAGGAAACGAGA 57.253 40.000 0.00 0.00 0.00 4.04
2708 2791 8.343168 CTATGAGTAGGAATAGGAAACGAGAT 57.657 38.462 0.00 0.00 0.00 2.75
2709 2792 6.392625 TGAGTAGGAATAGGAAACGAGATG 57.607 41.667 0.00 0.00 0.00 2.90
2710 2793 5.892119 TGAGTAGGAATAGGAAACGAGATGT 59.108 40.000 0.00 0.00 0.00 3.06
2711 2794 6.039493 TGAGTAGGAATAGGAAACGAGATGTC 59.961 42.308 0.00 0.00 0.00 3.06
2712 2795 5.892119 AGTAGGAATAGGAAACGAGATGTCA 59.108 40.000 0.00 0.00 0.00 3.58
2713 2796 5.878406 AGGAATAGGAAACGAGATGTCAT 57.122 39.130 0.00 0.00 0.00 3.06
2714 2797 6.240549 AGGAATAGGAAACGAGATGTCATT 57.759 37.500 0.00 0.00 0.00 2.57
2715 2798 6.653989 AGGAATAGGAAACGAGATGTCATTT 58.346 36.000 0.00 0.00 0.00 2.32
2716 2799 6.540189 AGGAATAGGAAACGAGATGTCATTTG 59.460 38.462 0.00 0.00 0.00 2.32
2717 2800 6.238484 GGAATAGGAAACGAGATGTCATTTGG 60.238 42.308 0.00 0.00 0.00 3.28
2718 2801 4.021102 AGGAAACGAGATGTCATTTGGT 57.979 40.909 0.00 0.00 0.00 3.67
2719 2802 4.398319 AGGAAACGAGATGTCATTTGGTT 58.602 39.130 0.00 0.00 0.00 3.67
2720 2803 4.216257 AGGAAACGAGATGTCATTTGGTTG 59.784 41.667 4.80 0.00 0.00 3.77
2721 2804 4.215399 GGAAACGAGATGTCATTTGGTTGA 59.785 41.667 4.80 0.00 0.00 3.18
2722 2805 4.749245 AACGAGATGTCATTTGGTTGAC 57.251 40.909 3.39 0.00 45.05 3.18
2738 2821 5.984233 GGTTGACACCAAAGGAATTTTTC 57.016 39.130 0.00 0.00 43.61 2.29
2739 2822 4.814234 GGTTGACACCAAAGGAATTTTTCC 59.186 41.667 0.00 0.00 45.80 3.13
2740 2823 5.627968 GGTTGACACCAAAGGAATTTTTCCA 60.628 40.000 8.87 0.00 46.88 3.53
2741 2824 6.911529 GGTTGACACCAAAGGAATTTTTCCAT 60.912 38.462 8.87 0.00 46.88 3.41
2742 2825 8.334633 GGTTGACACCAAAGGAATTTTTCCATT 61.335 37.037 8.87 0.31 46.88 3.16
2753 2836 6.765915 GAATTTTTCCATTGAGTCTAGGCT 57.234 37.500 0.00 0.00 0.00 4.58
2754 2837 6.765915 AATTTTTCCATTGAGTCTAGGCTC 57.234 37.500 17.74 17.74 36.12 4.70
2755 2838 4.908601 TTTTCCATTGAGTCTAGGCTCA 57.091 40.909 23.07 23.07 43.03 4.26
2756 2839 5.441718 TTTTCCATTGAGTCTAGGCTCAT 57.558 39.130 26.91 14.39 43.99 2.90
2757 2840 5.441718 TTTCCATTGAGTCTAGGCTCATT 57.558 39.130 26.91 20.33 43.99 2.57
2758 2841 5.441718 TTCCATTGAGTCTAGGCTCATTT 57.558 39.130 26.91 15.12 43.99 2.32
2759 2842 5.441718 TCCATTGAGTCTAGGCTCATTTT 57.558 39.130 26.91 12.69 43.99 1.82
2760 2843 5.819991 TCCATTGAGTCTAGGCTCATTTTT 58.180 37.500 26.91 10.30 43.99 1.94
2761 2844 6.957631 TCCATTGAGTCTAGGCTCATTTTTA 58.042 36.000 26.91 12.75 43.99 1.52
2762 2845 7.577303 TCCATTGAGTCTAGGCTCATTTTTAT 58.423 34.615 26.91 14.49 43.99 1.40
2763 2846 8.055181 TCCATTGAGTCTAGGCTCATTTTTATT 58.945 33.333 26.91 4.66 43.99 1.40
2764 2847 8.689972 CCATTGAGTCTAGGCTCATTTTTATTT 58.310 33.333 26.91 3.37 43.99 1.40
2767 2850 8.281212 TGAGTCTAGGCTCATTTTTATTTTCC 57.719 34.615 23.07 0.00 40.23 3.13
2768 2851 8.109634 TGAGTCTAGGCTCATTTTTATTTTCCT 58.890 33.333 23.07 0.00 40.23 3.36
2769 2852 9.614792 GAGTCTAGGCTCATTTTTATTTTCCTA 57.385 33.333 19.57 0.00 35.67 2.94
2787 2870 9.813826 ATTTTCCTATAAAATGTGGAGGATAGG 57.186 33.333 0.00 0.00 36.22 2.57
2788 2871 8.575736 TTTCCTATAAAATGTGGAGGATAGGA 57.424 34.615 4.66 4.66 41.91 2.94
2789 2872 8.575736 TTCCTATAAAATGTGGAGGATAGGAA 57.424 34.615 14.34 14.34 46.44 3.36
2790 2873 7.974504 TCCTATAAAATGTGGAGGATAGGAAC 58.025 38.462 6.07 0.00 41.11 3.62
2791 2874 7.017254 TCCTATAAAATGTGGAGGATAGGAACC 59.983 40.741 6.07 0.00 41.11 3.62
2792 2875 3.560636 AAATGTGGAGGATAGGAACCG 57.439 47.619 0.00 0.00 0.00 4.44
2793 2876 2.471815 ATGTGGAGGATAGGAACCGA 57.528 50.000 0.00 0.00 0.00 4.69
2794 2877 2.471815 TGTGGAGGATAGGAACCGAT 57.528 50.000 0.00 0.00 0.00 4.18
2795 2878 2.317040 TGTGGAGGATAGGAACCGATC 58.683 52.381 5.58 5.58 0.00 3.69
2846 2929 3.895704 ACCAAAGGGCTCTAAAGGAAA 57.104 42.857 5.94 0.00 37.90 3.13
2847 2930 4.193240 ACCAAAGGGCTCTAAAGGAAAA 57.807 40.909 5.94 0.00 37.90 2.29
2848 2931 4.552674 ACCAAAGGGCTCTAAAGGAAAAA 58.447 39.130 5.94 0.00 37.90 1.94
2882 2965 9.459094 AAGAAAATCCTATCCTCTAGAATTCCT 57.541 33.333 0.65 0.00 0.00 3.36
2893 2976 8.805145 TCCTCTAGAATTCCTATGAAATTCCT 57.195 34.615 0.65 0.00 33.32 3.36
2894 2977 8.875168 TCCTCTAGAATTCCTATGAAATTCCTC 58.125 37.037 0.65 0.00 33.32 3.71
2895 2978 8.100164 CCTCTAGAATTCCTATGAAATTCCTCC 58.900 40.741 0.65 0.00 33.32 4.30
2896 2979 8.567198 TCTAGAATTCCTATGAAATTCCTCCA 57.433 34.615 0.65 0.00 33.32 3.86
2897 2980 9.003145 TCTAGAATTCCTATGAAATTCCTCCAA 57.997 33.333 0.65 0.00 33.32 3.53
2898 2981 9.632638 CTAGAATTCCTATGAAATTCCTCCAAA 57.367 33.333 0.65 0.00 33.32 3.28
2899 2982 8.298729 AGAATTCCTATGAAATTCCTCCAAAC 57.701 34.615 0.65 0.00 33.32 2.93
2900 2983 7.343057 AGAATTCCTATGAAATTCCTCCAAACC 59.657 37.037 0.65 0.00 33.32 3.27
2901 2984 5.528600 TCCTATGAAATTCCTCCAAACCA 57.471 39.130 0.00 0.00 0.00 3.67
2902 2985 5.898120 TCCTATGAAATTCCTCCAAACCAA 58.102 37.500 0.00 0.00 0.00 3.67
2903 2986 6.318913 TCCTATGAAATTCCTCCAAACCAAA 58.681 36.000 0.00 0.00 0.00 3.28
2904 2987 6.437162 TCCTATGAAATTCCTCCAAACCAAAG 59.563 38.462 0.00 0.00 0.00 2.77
2905 2988 4.953940 TGAAATTCCTCCAAACCAAAGG 57.046 40.909 0.00 0.00 0.00 3.11
2906 2989 4.551671 TGAAATTCCTCCAAACCAAAGGA 58.448 39.130 0.00 0.00 37.42 3.36
2910 2993 2.658548 CTCCAAACCAAAGGAGGCC 58.341 57.895 0.00 0.00 46.11 5.19
2911 2994 0.113190 CTCCAAACCAAAGGAGGCCT 59.887 55.000 3.86 3.86 46.11 5.19
2912 2995 1.354368 CTCCAAACCAAAGGAGGCCTA 59.646 52.381 4.42 0.00 46.11 3.93
2913 2996 1.783979 TCCAAACCAAAGGAGGCCTAA 59.216 47.619 4.42 0.00 31.13 2.69
2914 2997 2.178106 TCCAAACCAAAGGAGGCCTAAA 59.822 45.455 4.42 0.00 31.13 1.85
2915 2998 2.562738 CCAAACCAAAGGAGGCCTAAAG 59.437 50.000 4.42 0.00 31.13 1.85
2916 2999 2.562738 CAAACCAAAGGAGGCCTAAAGG 59.437 50.000 4.42 6.44 31.13 3.11
2917 3000 1.755200 ACCAAAGGAGGCCTAAAGGA 58.245 50.000 4.42 0.00 37.39 3.36
2918 3001 2.288525 ACCAAAGGAGGCCTAAAGGAT 58.711 47.619 4.42 0.00 37.39 3.24
2919 3002 2.654896 ACCAAAGGAGGCCTAAAGGATT 59.345 45.455 4.42 0.00 37.39 3.01
2920 3003 3.077543 ACCAAAGGAGGCCTAAAGGATTT 59.922 43.478 4.42 0.00 43.42 2.17
2921 3004 4.096681 CCAAAGGAGGCCTAAAGGATTTT 58.903 43.478 4.42 0.00 40.09 1.82
2922 3005 4.532126 CCAAAGGAGGCCTAAAGGATTTTT 59.468 41.667 4.42 0.00 40.09 1.94
3007 3090 8.146412 TGACATGTATCTCAAATCCTATGAGTG 58.854 37.037 0.00 0.00 43.77 3.51
3026 3109 4.786425 AGTGGGAATAGGAAAAGAGATGC 58.214 43.478 0.00 0.00 0.00 3.91
3054 3137 8.741101 TTTCGTTCACATCATAGGAATTTTTG 57.259 30.769 0.00 0.00 0.00 2.44
3055 3138 7.447374 TCGTTCACATCATAGGAATTTTTGT 57.553 32.000 0.00 0.00 0.00 2.83
3056 3139 7.526608 TCGTTCACATCATAGGAATTTTTGTC 58.473 34.615 0.00 0.00 0.00 3.18
3057 3140 7.174080 TCGTTCACATCATAGGAATTTTTGTCA 59.826 33.333 0.00 0.00 0.00 3.58
3059 3142 9.643693 GTTCACATCATAGGAATTTTTGTCATT 57.356 29.630 0.00 0.00 0.00 2.57
3061 3144 9.859427 TCACATCATAGGAATTTTTGTCATTTC 57.141 29.630 0.00 0.00 0.00 2.17
3063 3146 8.522830 ACATCATAGGAATTTTTGTCATTTCGT 58.477 29.630 0.00 0.00 0.00 3.85
3305 3403 9.221933 TCTTGTTAATTTCCGTGCTATTTTCTA 57.778 29.630 0.00 0.00 0.00 2.10
3402 3510 4.991687 GGCATACTGACATAGGAAGTTAGC 59.008 45.833 0.00 0.00 0.00 3.09
3417 3525 6.204882 AGGAAGTTAGCAATTGTACTGTTGTC 59.795 38.462 7.40 3.62 0.00 3.18
3478 3586 7.734924 AATGATACCAATATGTGTACTGCAG 57.265 36.000 13.48 13.48 0.00 4.41
3503 3611 6.936900 GCTGCTCCATAGATATCCTGTTTTTA 59.063 38.462 0.00 0.00 0.00 1.52
3645 3793 9.710900 GTATTTTGATTTTTCAAATCCTCCAGT 57.289 29.630 6.73 0.00 39.07 4.00
3724 3872 1.415659 AGCAGCACAGACTCTTCAACT 59.584 47.619 0.00 0.00 0.00 3.16
3988 4136 5.702065 TGGTACAAATAGTTCCTGCCATA 57.298 39.130 0.00 0.00 38.41 2.74
4038 4186 2.034124 AGTGTTGCAGCCAAATGAAGT 58.966 42.857 0.00 0.00 31.68 3.01
4102 4250 2.271800 GGTGTATGCTCTTCTGGTTCG 58.728 52.381 0.00 0.00 0.00 3.95
4227 4381 7.595819 TTCCCATAATTAATAAGGTTGGCAG 57.404 36.000 0.00 0.00 0.00 4.85
4766 5273 8.451908 AGAGTTTTGTCTGTTATAAACAAGCT 57.548 30.769 0.00 5.06 41.61 3.74
4767 5274 8.345565 AGAGTTTTGTCTGTTATAAACAAGCTG 58.654 33.333 10.04 0.00 41.61 4.24
4770 5277 7.561021 TTTGTCTGTTATAAACAAGCTGTGA 57.439 32.000 0.00 0.00 41.61 3.58
4772 5279 8.840833 TTGTCTGTTATAAACAAGCTGTGATA 57.159 30.769 0.00 0.00 41.61 2.15
4774 5281 8.935844 TGTCTGTTATAAACAAGCTGTGATAAG 58.064 33.333 0.00 0.00 41.61 1.73
4775 5282 7.905493 GTCTGTTATAAACAAGCTGTGATAAGC 59.095 37.037 0.00 0.00 41.61 3.09
4785 5292 6.599244 ACAAGCTGTGATAAGCATTAAAGCTA 59.401 34.615 5.49 0.00 45.89 3.32
4787 5294 7.199541 AGCTGTGATAAGCATTAAAGCTATG 57.800 36.000 5.49 0.00 45.89 2.23
4788 5295 6.994496 AGCTGTGATAAGCATTAAAGCTATGA 59.006 34.615 5.49 0.00 45.89 2.15
4789 5296 7.664731 AGCTGTGATAAGCATTAAAGCTATGAT 59.335 33.333 5.49 0.36 45.89 2.45
4852 5368 6.709397 AGTGATACATGATTAATCTGCACCTG 59.291 38.462 16.24 6.97 0.00 4.00
5496 6044 5.883115 TCTGGTTTTGTGTGATTAGACAACA 59.117 36.000 0.00 0.00 39.48 3.33
5997 6545 6.315091 TGCAATCAAATTTGACCAAAATGG 57.685 33.333 22.71 5.22 45.02 3.16
6076 6624 7.151999 TCAAATCTTGTTGTGTGTACTTGTT 57.848 32.000 0.00 0.00 0.00 2.83
6090 6638 4.873827 TGTACTTGTTGAAGTGAACACTCC 59.126 41.667 7.93 0.00 42.66 3.85
6094 6642 6.177610 ACTTGTTGAAGTGAACACTCCTAAA 58.822 36.000 7.93 0.00 41.12 1.85
6126 6674 5.879777 TGTGTGTTATCACCATCCAGTATTG 59.120 40.000 1.53 0.00 43.26 1.90
6255 6906 6.657966 AGCTAATAACACTTCCTAACCCAAAC 59.342 38.462 0.00 0.00 0.00 2.93
6612 7275 1.077716 GACATGGGTAGGTGGCACC 60.078 63.158 29.32 29.32 38.99 5.01
6638 7301 7.502226 CCTTGTATTTCATCCAGTTAGCCAATA 59.498 37.037 0.00 0.00 0.00 1.90
6873 7554 2.953640 TTAAGTCGCGCGTCAAAATT 57.046 40.000 30.98 17.99 0.00 1.82
7133 7826 4.102996 TGCCTCTTAATGGTGCATCTATGA 59.897 41.667 0.00 0.00 0.00 2.15
7212 7905 3.118956 GCTGGCGATATACTAATCCTGCT 60.119 47.826 0.00 0.00 36.19 4.24
7284 8000 5.888982 TTGGATTGGAGGGAGTACTATTC 57.111 43.478 0.00 0.00 0.00 1.75
7285 8001 3.895656 TGGATTGGAGGGAGTACTATTCG 59.104 47.826 0.00 0.00 0.00 3.34
7415 8131 4.263639 CCCATATGATGTCCTGTTATGGCT 60.264 45.833 3.65 0.00 38.53 4.75
7523 8248 7.137567 ACTAGAACATACCCTTGTAACCCTAT 58.862 38.462 0.00 0.00 0.00 2.57
7692 8423 1.108776 CATCAGCTGACCCCAAATGG 58.891 55.000 20.97 0.00 0.00 3.16
7807 8538 1.284982 GCATCTGCAGTGTCGTCGTT 61.285 55.000 14.67 0.00 41.59 3.85
7945 8677 1.134640 GCACTTTTTGGTTCCCCGTTT 60.135 47.619 0.00 0.00 0.00 3.60
8063 8801 8.360390 GGAGAAAATTCCTTATTTGACACTGTT 58.640 33.333 0.00 0.00 36.57 3.16
8164 8904 4.203950 CGACACTTTCGTCCATTTTGAA 57.796 40.909 0.00 0.00 43.24 2.69
8184 8924 7.411486 TTGAACCTAAATGACACCTGAAAAA 57.589 32.000 0.00 0.00 0.00 1.94
8216 8959 1.675714 CCTCATGCGGTATGTGTGTGT 60.676 52.381 5.97 0.00 38.01 3.72
8221 8964 1.689352 GCGGTATGTGTGTGTACGCC 61.689 60.000 3.51 0.00 36.48 5.68
8315 9066 1.267806 GCTGCTGTGTGTGTTTGCTAT 59.732 47.619 0.00 0.00 0.00 2.97
8362 9127 0.813184 GCTGTTGCATGCCTATGTGT 59.187 50.000 16.68 0.00 39.41 3.72
8400 9170 3.274586 CTGCTGCTGCGTGTGTGT 61.275 61.111 11.21 0.00 43.34 3.72
8402 9172 3.576356 GCTGCTGCGTGTGTGTGT 61.576 61.111 0.00 0.00 0.00 3.72
8403 9173 2.243957 GCTGCTGCGTGTGTGTGTA 61.244 57.895 0.00 0.00 0.00 2.90
8408 9202 0.110688 CTGCGTGTGTGTGTATGTGC 60.111 55.000 0.00 0.00 0.00 4.57
8432 9226 4.236416 GTGCTGCGTGCGTGTGTT 62.236 61.111 0.00 0.00 46.63 3.32
8433 9227 2.586357 TGCTGCGTGCGTGTGTTA 60.586 55.556 0.00 0.00 46.63 2.41
8434 9228 2.127758 GCTGCGTGCGTGTGTTAC 60.128 61.111 0.00 0.00 0.00 2.50
8435 9229 2.594962 GCTGCGTGCGTGTGTTACT 61.595 57.895 0.00 0.00 0.00 2.24
8436 9230 1.201578 CTGCGTGCGTGTGTTACTG 59.798 57.895 0.00 0.00 0.00 2.74
8437 9231 2.127758 GCGTGCGTGTGTTACTGC 60.128 61.111 0.00 0.00 0.00 4.40
8439 9233 2.582265 CGTGCGTGTGTTACTGCGT 61.582 57.895 0.00 0.00 33.50 5.24
8468 9274 4.217111 CGTGCGCGTGTGTGTTGT 62.217 61.111 12.43 0.00 0.00 3.32
8534 9360 4.217111 CGCGTGCGTGTGTGTTGT 62.217 61.111 6.00 0.00 34.35 3.32
8650 9476 4.142160 GGCAAAAGAGTCTTTTCAGGTGTT 60.142 41.667 24.77 2.41 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.734620 TGAAATTTTGTGACTTGACAGATTTAG 57.265 29.630 0.00 0.00 30.17 1.85
150 151 4.599047 AGCGACCAAATTTCAAATCCAA 57.401 36.364 0.00 0.00 0.00 3.53
267 268 4.542697 GTTTTCCCAATATTGCCTAGGGA 58.457 43.478 11.72 4.36 46.43 4.20
474 475 1.532868 CAAGACCAGCACTACAGCAAC 59.467 52.381 0.00 0.00 36.85 4.17
476 477 1.047801 TCAAGACCAGCACTACAGCA 58.952 50.000 0.00 0.00 36.85 4.41
479 480 4.284490 AGAATCTTCAAGACCAGCACTACA 59.716 41.667 0.00 0.00 0.00 2.74
491 492 6.261826 AGGAACAGAACACAAGAATCTTCAAG 59.738 38.462 0.00 0.00 0.00 3.02
535 536 3.073228 AGCTAGTTGGTCCAGCTCA 57.927 52.632 12.09 0.00 41.79 4.26
660 661 1.990060 GGTCTGGCAGGCCACTCTA 60.990 63.158 32.45 0.00 40.51 2.43
727 730 2.357881 CTGTGCGCTCTGCTTGGA 60.358 61.111 9.73 0.00 46.63 3.53
741 744 3.941188 CCACACGACCCTGCCTGT 61.941 66.667 0.00 0.00 0.00 4.00
971 983 2.095059 GCAACGGAAGAAATCAGCACAT 60.095 45.455 0.00 0.00 0.00 3.21
1020 1034 4.039488 ACAGCAGCCTCAAATTTTTCATCA 59.961 37.500 0.00 0.00 0.00 3.07
1137 1151 1.347707 ACCCGAAAGTCATCAGCTTCA 59.652 47.619 0.00 0.00 0.00 3.02
1277 1291 9.629878 TTTTCTGTAATTCCTGTACCAAAAGTA 57.370 29.630 0.00 0.00 0.00 2.24
1457 1471 0.389025 GGCACAAACTGTTTGAGGGG 59.611 55.000 33.05 20.99 43.26 4.79
1497 1511 1.517257 CGGCAGTCGCGAAGAAGAT 60.517 57.895 12.06 0.00 39.92 2.40
1611 1625 0.325296 TAGCCAGTGGGGTCTCGAAT 60.325 55.000 12.15 0.00 45.66 3.34
1816 1842 5.069318 GGAAATTTTGCAATCCCCAAAGAA 58.931 37.500 0.00 0.00 34.10 2.52
1845 1871 6.228258 TGGAAGTAACTGGTGATAACTGTTC 58.772 40.000 0.00 0.00 33.12 3.18
1847 1873 5.818678 TGGAAGTAACTGGTGATAACTGT 57.181 39.130 0.00 0.00 0.00 3.55
2020 2093 8.439286 GCTTAGTTAAAGAGTGACTCAATCAAG 58.561 37.037 15.86 9.06 36.81 3.02
2032 2105 5.233988 CACAGCTCAGCTTAGTTAAAGAGT 58.766 41.667 0.00 0.00 36.40 3.24
2074 2147 1.269257 GGCAACTGTCAAAGTGCCTTC 60.269 52.381 12.10 0.00 43.82 3.46
2136 2209 8.598916 ACAAAGAGAAAACTAAAAGGGGAAAAA 58.401 29.630 0.00 0.00 0.00 1.94
2168 2244 9.880157 ACTAGCTAATTAATCGTACAAAAGGAA 57.120 29.630 0.00 0.00 0.00 3.36
2253 2332 3.806949 TTAAGGAGGGCACTGAAATGT 57.193 42.857 0.00 0.00 0.00 2.71
2265 2344 8.183104 TGAGTGTCATCTGTATATTAAGGAGG 57.817 38.462 0.00 0.00 0.00 4.30
2351 2432 6.140968 AGGAGGCCTACAAGTTTTCTATTT 57.859 37.500 19.90 0.00 28.47 1.40
2383 2464 6.723052 CCTATTCCTACGATTTTCCTACCCTA 59.277 42.308 0.00 0.00 0.00 3.53
2384 2465 5.543020 CCTATTCCTACGATTTTCCTACCCT 59.457 44.000 0.00 0.00 0.00 4.34
2385 2466 5.541484 TCCTATTCCTACGATTTTCCTACCC 59.459 44.000 0.00 0.00 0.00 3.69
2386 2467 6.661304 TCCTATTCCTACGATTTTCCTACC 57.339 41.667 0.00 0.00 0.00 3.18
2387 2468 8.202811 ACTTTCCTATTCCTACGATTTTCCTAC 58.797 37.037 0.00 0.00 0.00 3.18
2388 2469 8.315220 ACTTTCCTATTCCTACGATTTTCCTA 57.685 34.615 0.00 0.00 0.00 2.94
2389 2470 7.093024 TGACTTTCCTATTCCTACGATTTTCCT 60.093 37.037 0.00 0.00 0.00 3.36
2390 2471 7.011202 GTGACTTTCCTATTCCTACGATTTTCC 59.989 40.741 0.00 0.00 0.00 3.13
2391 2472 7.548075 TGTGACTTTCCTATTCCTACGATTTTC 59.452 37.037 0.00 0.00 0.00 2.29
2392 2473 7.391620 TGTGACTTTCCTATTCCTACGATTTT 58.608 34.615 0.00 0.00 0.00 1.82
2393 2474 6.942976 TGTGACTTTCCTATTCCTACGATTT 58.057 36.000 0.00 0.00 0.00 2.17
2394 2475 6.407074 CCTGTGACTTTCCTATTCCTACGATT 60.407 42.308 0.00 0.00 0.00 3.34
2395 2476 5.069251 CCTGTGACTTTCCTATTCCTACGAT 59.931 44.000 0.00 0.00 0.00 3.73
2396 2477 4.401519 CCTGTGACTTTCCTATTCCTACGA 59.598 45.833 0.00 0.00 0.00 3.43
2397 2478 4.401519 TCCTGTGACTTTCCTATTCCTACG 59.598 45.833 0.00 0.00 0.00 3.51
2398 2479 5.934402 TCCTGTGACTTTCCTATTCCTAC 57.066 43.478 0.00 0.00 0.00 3.18
2399 2480 6.945636 TTTCCTGTGACTTTCCTATTCCTA 57.054 37.500 0.00 0.00 0.00 2.94
2400 2481 5.843019 TTTCCTGTGACTTTCCTATTCCT 57.157 39.130 0.00 0.00 0.00 3.36
2401 2482 6.180472 TCATTTCCTGTGACTTTCCTATTCC 58.820 40.000 0.00 0.00 0.00 3.01
2402 2483 7.106239 TCTCATTTCCTGTGACTTTCCTATTC 58.894 38.462 0.00 0.00 0.00 1.75
2403 2484 7.020827 TCTCATTTCCTGTGACTTTCCTATT 57.979 36.000 0.00 0.00 0.00 1.73
2404 2485 6.627087 TCTCATTTCCTGTGACTTTCCTAT 57.373 37.500 0.00 0.00 0.00 2.57
2405 2486 6.213397 TCATCTCATTTCCTGTGACTTTCCTA 59.787 38.462 0.00 0.00 30.60 2.94
2406 2487 4.982241 TCTCATTTCCTGTGACTTTCCT 57.018 40.909 0.00 0.00 0.00 3.36
2407 2488 5.123027 GTCATCTCATTTCCTGTGACTTTCC 59.877 44.000 0.00 0.00 34.63 3.13
2408 2489 5.702670 TGTCATCTCATTTCCTGTGACTTTC 59.297 40.000 0.00 0.00 37.46 2.62
2409 2490 5.624159 TGTCATCTCATTTCCTGTGACTTT 58.376 37.500 0.00 0.00 37.46 2.66
2410 2491 5.233083 TGTCATCTCATTTCCTGTGACTT 57.767 39.130 0.00 0.00 37.46 3.01
2411 2492 4.897509 TGTCATCTCATTTCCTGTGACT 57.102 40.909 0.00 0.00 37.46 3.41
2412 2493 4.940046 ACATGTCATCTCATTTCCTGTGAC 59.060 41.667 0.00 0.00 37.18 3.67
2413 2494 5.169992 ACATGTCATCTCATTTCCTGTGA 57.830 39.130 0.00 0.00 0.00 3.58
2414 2495 6.990939 AGATACATGTCATCTCATTTCCTGTG 59.009 38.462 0.00 0.00 0.00 3.66
2415 2496 7.134362 AGATACATGTCATCTCATTTCCTGT 57.866 36.000 0.00 0.00 0.00 4.00
2416 2497 7.655236 GAGATACATGTCATCTCATTTCCTG 57.345 40.000 24.95 0.00 45.17 3.86
2505 2588 8.548877 AGGAAAATAAACATTAGGCTAGACTCA 58.451 33.333 0.00 0.00 0.00 3.41
2583 2666 4.403734 CCTTAGAGCCCTTTGGTTTGTAA 58.596 43.478 0.00 0.00 0.00 2.41
2584 2667 3.812882 GCCTTAGAGCCCTTTGGTTTGTA 60.813 47.826 0.00 0.00 0.00 2.41
2585 2668 2.876581 CCTTAGAGCCCTTTGGTTTGT 58.123 47.619 0.00 0.00 0.00 2.83
2586 2669 1.546029 GCCTTAGAGCCCTTTGGTTTG 59.454 52.381 0.00 0.00 0.00 2.93
2587 2670 1.924731 GCCTTAGAGCCCTTTGGTTT 58.075 50.000 0.00 0.00 0.00 3.27
2588 2671 3.672066 GCCTTAGAGCCCTTTGGTT 57.328 52.632 0.00 0.00 0.00 3.67
2597 2680 2.498644 ACCAAAAGAGGCCTTAGAGC 57.501 50.000 6.77 0.00 31.15 4.09
2598 2681 4.021102 TGAACCAAAAGAGGCCTTAGAG 57.979 45.455 6.77 0.00 31.15 2.43
2599 2682 4.657814 ATGAACCAAAAGAGGCCTTAGA 57.342 40.909 6.77 0.00 31.15 2.10
2600 2683 4.884164 CCTATGAACCAAAAGAGGCCTTAG 59.116 45.833 6.77 0.00 31.15 2.18
2601 2684 4.538490 TCCTATGAACCAAAAGAGGCCTTA 59.462 41.667 6.77 0.00 31.15 2.69
2602 2685 3.333680 TCCTATGAACCAAAAGAGGCCTT 59.666 43.478 6.77 0.00 0.00 4.35
2603 2686 2.919602 TCCTATGAACCAAAAGAGGCCT 59.080 45.455 3.86 3.86 0.00 5.19
2604 2687 3.366052 TCCTATGAACCAAAAGAGGCC 57.634 47.619 0.00 0.00 0.00 5.19
2605 2688 5.066593 CCTATCCTATGAACCAAAAGAGGC 58.933 45.833 0.00 0.00 0.00 4.70
2606 2689 6.500589 TCCTATCCTATGAACCAAAAGAGG 57.499 41.667 0.00 0.00 0.00 3.69
2609 2692 9.155975 CGATAATCCTATCCTATGAACCAAAAG 57.844 37.037 0.00 0.00 31.68 2.27
2610 2693 8.656806 ACGATAATCCTATCCTATGAACCAAAA 58.343 33.333 0.00 0.00 31.68 2.44
2611 2694 8.202461 ACGATAATCCTATCCTATGAACCAAA 57.798 34.615 0.00 0.00 31.68 3.28
2612 2695 7.792364 ACGATAATCCTATCCTATGAACCAA 57.208 36.000 0.00 0.00 31.68 3.67
2613 2696 7.560262 CCTACGATAATCCTATCCTATGAACCA 59.440 40.741 0.00 0.00 31.68 3.67
2614 2697 7.778853 TCCTACGATAATCCTATCCTATGAACC 59.221 40.741 0.00 0.00 31.68 3.62
2615 2698 8.749026 TCCTACGATAATCCTATCCTATGAAC 57.251 38.462 0.00 0.00 31.68 3.18
2616 2699 9.937876 ATTCCTACGATAATCCTATCCTATGAA 57.062 33.333 0.00 0.00 31.68 2.57
2620 2703 9.234086 TCCTATTCCTACGATAATCCTATCCTA 57.766 37.037 0.00 0.00 31.68 2.94
2621 2704 8.115490 TCCTATTCCTACGATAATCCTATCCT 57.885 38.462 0.00 0.00 31.68 3.24
2622 2705 8.763984 TTCCTATTCCTACGATAATCCTATCC 57.236 38.462 0.00 0.00 31.68 2.59
2626 2709 9.726438 CAAAATTCCTATTCCTACGATAATCCT 57.274 33.333 0.00 0.00 0.00 3.24
2627 2710 9.503399 ACAAAATTCCTATTCCTACGATAATCC 57.497 33.333 0.00 0.00 0.00 3.01
2630 2713 9.991906 CCTACAAAATTCCTATTCCTACGATAA 57.008 33.333 0.00 0.00 0.00 1.75
2631 2714 9.370930 TCCTACAAAATTCCTATTCCTACGATA 57.629 33.333 0.00 0.00 0.00 2.92
2632 2715 8.258850 TCCTACAAAATTCCTATTCCTACGAT 57.741 34.615 0.00 0.00 0.00 3.73
2633 2716 7.664552 TCCTACAAAATTCCTATTCCTACGA 57.335 36.000 0.00 0.00 0.00 3.43
2634 2717 8.726870 TTTCCTACAAAATTCCTATTCCTACG 57.273 34.615 0.00 0.00 0.00 3.51
2637 2720 9.413734 CTCATTTCCTACAAAATTCCTATTCCT 57.586 33.333 0.00 0.00 0.00 3.36
2638 2721 9.408648 TCTCATTTCCTACAAAATTCCTATTCC 57.591 33.333 0.00 0.00 0.00 3.01
2642 2725 9.396022 GTCATCTCATTTCCTACAAAATTCCTA 57.604 33.333 0.00 0.00 0.00 2.94
2643 2726 7.890127 TGTCATCTCATTTCCTACAAAATTCCT 59.110 33.333 0.00 0.00 0.00 3.36
2644 2727 8.055279 TGTCATCTCATTTCCTACAAAATTCC 57.945 34.615 0.00 0.00 0.00 3.01
2645 2728 9.512435 CATGTCATCTCATTTCCTACAAAATTC 57.488 33.333 0.00 0.00 0.00 2.17
2646 2729 9.028284 ACATGTCATCTCATTTCCTACAAAATT 57.972 29.630 0.00 0.00 0.00 1.82
2647 2730 8.585471 ACATGTCATCTCATTTCCTACAAAAT 57.415 30.769 0.00 0.00 0.00 1.82
2648 2731 9.685276 ATACATGTCATCTCATTTCCTACAAAA 57.315 29.630 0.00 0.00 0.00 2.44
2649 2732 9.330063 GATACATGTCATCTCATTTCCTACAAA 57.670 33.333 0.00 0.00 0.00 2.83
2650 2733 8.708378 AGATACATGTCATCTCATTTCCTACAA 58.292 33.333 0.00 0.00 0.00 2.41
2651 2734 8.255111 AGATACATGTCATCTCATTTCCTACA 57.745 34.615 0.00 0.00 0.00 2.74
2652 2735 8.755696 GAGATACATGTCATCTCATTTCCTAC 57.244 38.462 24.95 8.46 45.17 3.18
2661 2744 9.368674 CATAGGATTTGAGATACATGTCATCTC 57.631 37.037 24.04 24.04 45.76 2.75
2662 2745 9.097946 TCATAGGATTTGAGATACATGTCATCT 57.902 33.333 0.00 9.42 35.43 2.90
2663 2746 9.368674 CTCATAGGATTTGAGATACATGTCATC 57.631 37.037 0.00 4.47 42.63 2.92
2664 2747 8.878211 ACTCATAGGATTTGAGATACATGTCAT 58.122 33.333 0.00 0.00 42.63 3.06
2665 2748 8.255111 ACTCATAGGATTTGAGATACATGTCA 57.745 34.615 0.00 0.00 42.63 3.58
2666 2749 9.853555 CTACTCATAGGATTTGAGATACATGTC 57.146 37.037 0.00 0.00 42.63 3.06
2683 2766 7.747155 TCTCGTTTCCTATTCCTACTCATAG 57.253 40.000 0.00 0.00 0.00 2.23
2684 2767 7.724506 ACATCTCGTTTCCTATTCCTACTCATA 59.275 37.037 0.00 0.00 0.00 2.15
2685 2768 6.551601 ACATCTCGTTTCCTATTCCTACTCAT 59.448 38.462 0.00 0.00 0.00 2.90
2686 2769 5.892119 ACATCTCGTTTCCTATTCCTACTCA 59.108 40.000 0.00 0.00 0.00 3.41
2687 2770 6.039493 TGACATCTCGTTTCCTATTCCTACTC 59.961 42.308 0.00 0.00 0.00 2.59
2688 2771 5.892119 TGACATCTCGTTTCCTATTCCTACT 59.108 40.000 0.00 0.00 0.00 2.57
2689 2772 6.145338 TGACATCTCGTTTCCTATTCCTAC 57.855 41.667 0.00 0.00 0.00 3.18
2690 2773 6.978674 ATGACATCTCGTTTCCTATTCCTA 57.021 37.500 0.00 0.00 0.00 2.94
2691 2774 5.878406 ATGACATCTCGTTTCCTATTCCT 57.122 39.130 0.00 0.00 0.00 3.36
2692 2775 6.238484 CCAAATGACATCTCGTTTCCTATTCC 60.238 42.308 0.00 0.00 33.97 3.01
2693 2776 6.316390 ACCAAATGACATCTCGTTTCCTATTC 59.684 38.462 0.00 0.00 33.97 1.75
2694 2777 6.180472 ACCAAATGACATCTCGTTTCCTATT 58.820 36.000 0.00 0.00 33.97 1.73
2695 2778 5.745227 ACCAAATGACATCTCGTTTCCTAT 58.255 37.500 0.00 0.00 33.97 2.57
2696 2779 5.160607 ACCAAATGACATCTCGTTTCCTA 57.839 39.130 0.00 0.00 33.97 2.94
2697 2780 4.021102 ACCAAATGACATCTCGTTTCCT 57.979 40.909 0.00 0.00 33.97 3.36
2698 2781 4.215399 TCAACCAAATGACATCTCGTTTCC 59.785 41.667 0.00 0.00 33.97 3.13
2699 2782 5.356882 TCAACCAAATGACATCTCGTTTC 57.643 39.130 0.00 0.00 33.97 2.78
2716 2799 4.814234 GGAAAAATTCCTTTGGTGTCAACC 59.186 41.667 1.86 0.00 46.57 3.77
2717 2800 5.984233 GGAAAAATTCCTTTGGTGTCAAC 57.016 39.130 1.86 0.00 46.57 3.18
2728 2811 8.285329 GAGCCTAGACTCAATGGAAAAATTCCT 61.285 40.741 10.28 0.00 42.21 3.36
2729 2812 6.183360 GAGCCTAGACTCAATGGAAAAATTCC 60.183 42.308 0.51 2.12 42.14 3.01
2730 2813 6.375455 TGAGCCTAGACTCAATGGAAAAATTC 59.625 38.462 6.25 0.00 43.59 2.17
2731 2814 6.248433 TGAGCCTAGACTCAATGGAAAAATT 58.752 36.000 6.25 0.00 43.59 1.82
2732 2815 5.819991 TGAGCCTAGACTCAATGGAAAAAT 58.180 37.500 6.25 0.00 43.59 1.82
2733 2816 5.241403 TGAGCCTAGACTCAATGGAAAAA 57.759 39.130 6.25 0.00 43.59 1.94
2734 2817 4.908601 TGAGCCTAGACTCAATGGAAAA 57.091 40.909 6.25 0.00 43.59 2.29
2743 2826 8.512966 AGGAAAATAAAAATGAGCCTAGACTC 57.487 34.615 0.00 0.00 37.19 3.36
2761 2844 9.813826 CCTATCCTCCACATTTTATAGGAAAAT 57.186 33.333 0.00 0.00 39.68 1.82
2762 2845 9.009675 TCCTATCCTCCACATTTTATAGGAAAA 57.990 33.333 6.45 0.00 41.08 2.29
2763 2846 8.575736 TCCTATCCTCCACATTTTATAGGAAA 57.424 34.615 6.45 0.00 41.08 3.13
2764 2847 8.437575 GTTCCTATCCTCCACATTTTATAGGAA 58.562 37.037 14.58 14.58 46.36 3.36
2765 2848 7.017254 GGTTCCTATCCTCCACATTTTATAGGA 59.983 40.741 0.00 0.00 41.87 2.94
2766 2849 7.168905 GGTTCCTATCCTCCACATTTTATAGG 58.831 42.308 0.00 0.00 38.09 2.57
2767 2850 6.874134 CGGTTCCTATCCTCCACATTTTATAG 59.126 42.308 0.00 0.00 0.00 1.31
2768 2851 6.555738 TCGGTTCCTATCCTCCACATTTTATA 59.444 38.462 0.00 0.00 0.00 0.98
2769 2852 5.368523 TCGGTTCCTATCCTCCACATTTTAT 59.631 40.000 0.00 0.00 0.00 1.40
2770 2853 4.717778 TCGGTTCCTATCCTCCACATTTTA 59.282 41.667 0.00 0.00 0.00 1.52
2771 2854 3.521937 TCGGTTCCTATCCTCCACATTTT 59.478 43.478 0.00 0.00 0.00 1.82
2772 2855 3.112263 TCGGTTCCTATCCTCCACATTT 58.888 45.455 0.00 0.00 0.00 2.32
2773 2856 2.759355 TCGGTTCCTATCCTCCACATT 58.241 47.619 0.00 0.00 0.00 2.71
2774 2857 2.471815 TCGGTTCCTATCCTCCACAT 57.528 50.000 0.00 0.00 0.00 3.21
2775 2858 2.317040 GATCGGTTCCTATCCTCCACA 58.683 52.381 0.00 0.00 0.00 4.17
2776 2859 1.619332 GGATCGGTTCCTATCCTCCAC 59.381 57.143 13.13 0.00 41.78 4.02
2777 2860 2.011122 GGATCGGTTCCTATCCTCCA 57.989 55.000 13.13 0.00 41.78 3.86
2794 2877 8.826765 GGAATGGATTCTTATTCCTACATAGGA 58.173 37.037 18.13 3.36 45.66 2.94
2804 2887 8.924511 TGGTTCATAGGAATGGATTCTTATTC 57.075 34.615 0.00 0.00 37.08 1.75
2805 2888 9.713684 TTTGGTTCATAGGAATGGATTCTTATT 57.286 29.630 0.00 0.00 37.08 1.40
2806 2889 9.359653 CTTTGGTTCATAGGAATGGATTCTTAT 57.640 33.333 0.00 0.00 38.95 1.73
2807 2890 7.779798 CCTTTGGTTCATAGGAATGGATTCTTA 59.220 37.037 0.00 0.00 35.14 2.10
2808 2891 6.608808 CCTTTGGTTCATAGGAATGGATTCTT 59.391 38.462 0.00 0.00 35.14 2.52
2809 2892 6.131961 CCTTTGGTTCATAGGAATGGATTCT 58.868 40.000 0.00 0.00 35.14 2.40
2810 2893 5.302823 CCCTTTGGTTCATAGGAATGGATTC 59.697 44.000 6.07 0.00 35.14 2.52
2811 2894 5.211201 CCCTTTGGTTCATAGGAATGGATT 58.789 41.667 6.07 0.00 35.14 3.01
2812 2895 4.808042 CCCTTTGGTTCATAGGAATGGAT 58.192 43.478 6.07 0.00 35.14 3.41
2813 2896 3.627237 GCCCTTTGGTTCATAGGAATGGA 60.627 47.826 6.07 0.00 35.14 3.41
2814 2897 2.695147 GCCCTTTGGTTCATAGGAATGG 59.305 50.000 6.07 0.00 35.14 3.16
2815 2898 3.633986 GAGCCCTTTGGTTCATAGGAATG 59.366 47.826 6.07 0.00 41.28 2.67
2816 2899 3.529319 AGAGCCCTTTGGTTCATAGGAAT 59.471 43.478 6.07 0.00 43.89 3.01
2817 2900 2.919602 AGAGCCCTTTGGTTCATAGGAA 59.080 45.455 6.07 0.00 43.89 3.36
2818 2901 2.562296 AGAGCCCTTTGGTTCATAGGA 58.438 47.619 6.07 0.00 43.89 2.94
2819 2902 4.503714 TTAGAGCCCTTTGGTTCATAGG 57.496 45.455 0.00 0.00 43.89 2.57
2823 2906 2.714250 TCCTTTAGAGCCCTTTGGTTCA 59.286 45.455 0.00 0.00 43.89 3.18
2824 2907 3.434940 TCCTTTAGAGCCCTTTGGTTC 57.565 47.619 0.00 0.00 41.91 3.62
2872 2955 9.632638 TTTGGAGGAATTTCATAGGAATTCTAG 57.367 33.333 5.23 0.00 31.93 2.43
2874 2957 7.343057 GGTTTGGAGGAATTTCATAGGAATTCT 59.657 37.037 5.23 0.00 31.93 2.40
2875 2958 7.124147 TGGTTTGGAGGAATTTCATAGGAATTC 59.876 37.037 0.00 0.00 31.93 2.17
2876 2959 6.959366 TGGTTTGGAGGAATTTCATAGGAATT 59.041 34.615 0.00 0.00 31.93 2.17
2877 2960 6.502138 TGGTTTGGAGGAATTTCATAGGAAT 58.498 36.000 0.00 0.00 31.93 3.01
2878 2961 5.898120 TGGTTTGGAGGAATTTCATAGGAA 58.102 37.500 0.00 0.00 0.00 3.36
2879 2962 5.528600 TGGTTTGGAGGAATTTCATAGGA 57.471 39.130 0.00 0.00 0.00 2.94
2880 2963 6.351286 CCTTTGGTTTGGAGGAATTTCATAGG 60.351 42.308 0.00 0.00 32.11 2.57
2881 2964 6.437162 TCCTTTGGTTTGGAGGAATTTCATAG 59.563 38.462 0.00 0.00 36.67 2.23
2882 2965 6.318913 TCCTTTGGTTTGGAGGAATTTCATA 58.681 36.000 0.00 0.00 36.67 2.15
2883 2966 5.154418 TCCTTTGGTTTGGAGGAATTTCAT 58.846 37.500 0.00 0.00 36.67 2.57
2884 2967 4.551671 TCCTTTGGTTTGGAGGAATTTCA 58.448 39.130 0.00 0.00 36.67 2.69
2885 2968 5.139435 CTCCTTTGGTTTGGAGGAATTTC 57.861 43.478 0.00 0.00 44.44 2.17
2892 2975 0.113190 AGGCCTCCTTTGGTTTGGAG 59.887 55.000 0.00 0.00 46.91 3.86
2893 2976 1.451449 TAGGCCTCCTTTGGTTTGGA 58.549 50.000 9.68 0.00 34.61 3.53
2894 2977 2.302587 TTAGGCCTCCTTTGGTTTGG 57.697 50.000 9.68 0.00 34.61 3.28
2895 2978 2.562738 CCTTTAGGCCTCCTTTGGTTTG 59.437 50.000 9.68 0.00 34.61 2.93
2896 2979 2.449345 TCCTTTAGGCCTCCTTTGGTTT 59.551 45.455 9.68 0.00 34.61 3.27
2897 2980 2.070573 TCCTTTAGGCCTCCTTTGGTT 58.929 47.619 9.68 0.00 34.61 3.67
2898 2981 1.755200 TCCTTTAGGCCTCCTTTGGT 58.245 50.000 9.68 0.00 34.61 3.67
2899 2982 3.388552 AATCCTTTAGGCCTCCTTTGG 57.611 47.619 9.68 6.17 34.61 3.28
2900 2983 5.745312 AAAAATCCTTTAGGCCTCCTTTG 57.255 39.130 9.68 0.00 34.61 2.77
2923 3006 7.998964 GGAATCTTGTAGGAATTTCCATAGGAA 59.001 37.037 17.57 0.00 39.61 3.36
2924 3007 7.350921 AGGAATCTTGTAGGAATTTCCATAGGA 59.649 37.037 17.57 9.00 39.61 2.94
2925 3008 7.521669 AGGAATCTTGTAGGAATTTCCATAGG 58.478 38.462 17.57 4.22 39.61 2.57
2926 3009 8.435982 AGAGGAATCTTGTAGGAATTTCCATAG 58.564 37.037 17.57 8.54 39.61 2.23
2927 3010 8.337118 AGAGGAATCTTGTAGGAATTTCCATA 57.663 34.615 17.57 4.67 39.61 2.74
2928 3011 7.218314 AGAGGAATCTTGTAGGAATTTCCAT 57.782 36.000 17.57 5.57 39.61 3.41
2929 3012 6.642733 AGAGGAATCTTGTAGGAATTTCCA 57.357 37.500 17.57 1.22 39.61 3.53
2930 3013 8.894731 GTTTAGAGGAATCTTGTAGGAATTTCC 58.105 37.037 7.39 7.39 36.58 3.13
2940 3023 6.200878 TCCTTTGGTTTAGAGGAATCTTGT 57.799 37.500 0.00 0.00 36.67 3.16
3007 3090 4.170468 TGGCATCTCTTTTCCTATTCCC 57.830 45.455 0.00 0.00 0.00 3.97
3026 3109 6.624352 ATTCCTATGATGTGAACGAAATGG 57.376 37.500 0.00 0.00 0.00 3.16
3055 3138 9.834628 GGAAAATAAACATTAGACACGAAATGA 57.165 29.630 2.30 0.00 36.73 2.57
3056 3139 9.840427 AGGAAAATAAACATTAGACACGAAATG 57.160 29.630 0.00 0.00 38.71 2.32
3059 3142 9.672086 CAAAGGAAAATAAACATTAGACACGAA 57.328 29.630 0.00 0.00 0.00 3.85
3060 3143 9.058174 TCAAAGGAAAATAAACATTAGACACGA 57.942 29.630 0.00 0.00 0.00 4.35
3061 3144 9.672086 TTCAAAGGAAAATAAACATTAGACACG 57.328 29.630 0.00 0.00 0.00 4.49
3305 3403 4.391830 CACACCGTAACTAGTGATGCATTT 59.608 41.667 0.00 0.00 37.43 2.32
3402 3510 8.633075 ATTCAAAGTTGACAACAGTACAATTG 57.367 30.769 20.08 3.24 36.83 2.32
3478 3586 4.550076 AACAGGATATCTATGGAGCAGC 57.450 45.455 2.05 0.00 0.00 5.25
3645 3793 7.392953 TGTTTCTTTCATGTGCATCCTTGTATA 59.607 33.333 0.00 0.00 0.00 1.47
3686 3834 2.819608 TGCTTGTGATTACTTGGCTTCC 59.180 45.455 0.00 0.00 0.00 3.46
3724 3872 7.817418 ATTTGACAAAGCTACCTCAAAGTTA 57.183 32.000 6.77 0.00 36.37 2.24
4038 4186 0.687920 TGGCATACACGAGGAACCAA 59.312 50.000 0.00 0.00 0.00 3.67
4102 4250 3.406764 ACTGATCTGTTCTCCAGCAAAC 58.593 45.455 0.00 0.00 41.25 2.93
4227 4381 2.124278 GGGGCGGAAGAATCCCAC 60.124 66.667 0.00 0.00 43.37 4.61
4759 5266 6.071728 AGCTTTAATGCTTATCACAGCTTGTT 60.072 34.615 9.92 0.00 40.93 2.83
4761 5268 5.888105 AGCTTTAATGCTTATCACAGCTTG 58.112 37.500 9.92 0.00 40.93 4.01
4763 5270 6.994496 TCATAGCTTTAATGCTTATCACAGCT 59.006 34.615 19.68 8.44 43.74 4.24
4764 5271 7.194607 TCATAGCTTTAATGCTTATCACAGC 57.805 36.000 19.68 0.94 43.74 4.40
4852 5368 3.425193 CGCCATTTTCACAGCTTGTTTAC 59.575 43.478 0.00 0.00 0.00 2.01
5496 6044 2.790433 ACTCCAAACGGCATGTATTGT 58.210 42.857 0.00 0.00 0.00 2.71
5534 6082 3.655486 TCTACGACATTTTTCTTGCGGA 58.345 40.909 0.00 0.00 0.00 5.54
5997 6545 1.084289 GGTGGCCGTTCATCAGTTAC 58.916 55.000 0.00 0.00 0.00 2.50
6076 6624 5.470098 GCAAGATTTAGGAGTGTTCACTTCA 59.530 40.000 12.92 0.00 0.00 3.02
6090 6638 6.546395 GTGATAACACACAGGCAAGATTTAG 58.454 40.000 0.00 0.00 45.32 1.85
6255 6906 7.475015 TGTCTCAAAATCACTTCTGTTCAAAG 58.525 34.615 0.00 0.00 0.00 2.77
6544 7207 3.683365 GGTGAAAAATGCCACCTGAAT 57.317 42.857 0.00 0.00 46.94 2.57
6612 7275 5.192927 TGGCTAACTGGATGAAATACAAGG 58.807 41.667 0.00 0.00 36.15 3.61
6893 7574 9.173021 CAATATTGTAGTCCTGTGGTCAAAATA 57.827 33.333 7.32 0.00 0.00 1.40
7096 7789 3.160679 AGAGGCATGCTAAAACCACTT 57.839 42.857 18.92 0.00 0.00 3.16
7227 7920 3.450578 GTTTCAGTTCAGTACCACGACA 58.549 45.455 0.00 0.00 0.00 4.35
7229 7922 2.431419 TGGTTTCAGTTCAGTACCACGA 59.569 45.455 0.00 0.00 34.13 4.35
7230 7923 2.542595 GTGGTTTCAGTTCAGTACCACG 59.457 50.000 6.92 0.00 46.32 4.94
7232 7925 2.431419 TCGTGGTTTCAGTTCAGTACCA 59.569 45.455 0.00 0.00 36.58 3.25
7233 7926 2.798847 GTCGTGGTTTCAGTTCAGTACC 59.201 50.000 0.00 0.00 0.00 3.34
7235 7928 3.131577 AGTGTCGTGGTTTCAGTTCAGTA 59.868 43.478 0.00 0.00 0.00 2.74
7284 8000 5.180492 TCTTCTGCTAAAATTGGTTACACCG 59.820 40.000 0.00 0.00 42.58 4.94
7285 8001 6.569179 TCTTCTGCTAAAATTGGTTACACC 57.431 37.500 0.00 0.00 39.22 4.16
7504 8220 4.637600 TGGATAGGGTTACAAGGGTATGT 58.362 43.478 0.00 0.00 37.32 2.29
7505 8221 5.104277 TGTTGGATAGGGTTACAAGGGTATG 60.104 44.000 0.00 0.00 0.00 2.39
7593 8322 9.921637 GGTGAAAATATTCATTTGTCTTTACCA 57.078 29.630 0.00 0.00 46.67 3.25
7657 8386 6.208402 TCAGCTGATGCAACTTTAATGGTAAA 59.792 34.615 13.74 0.00 42.74 2.01
7658 8387 5.709631 TCAGCTGATGCAACTTTAATGGTAA 59.290 36.000 13.74 0.00 42.74 2.85
7807 8538 6.707440 AATATCACTTGTGACAAAACCACA 57.293 33.333 5.53 0.00 42.16 4.17
7945 8677 7.822161 TCCAAATCAAAAGTTGAGATCAAGA 57.178 32.000 0.00 0.00 43.98 3.02
8019 8757 7.524717 TTTCTCCCCAAAATTCTTGTCTTAG 57.475 36.000 0.00 0.00 0.00 2.18
8151 8891 5.765677 TGTCATTTAGGTTCAAAATGGACGA 59.234 36.000 8.27 0.00 42.17 4.20
8184 8924 0.532115 GCATGAGGGGCAAAATCGTT 59.468 50.000 0.00 0.00 0.00 3.85
8216 8959 3.448533 AACAGCACACACGGGCGTA 62.449 57.895 0.00 0.00 34.54 4.42
8221 8964 3.572539 ACGCAACAGCACACACGG 61.573 61.111 0.00 0.00 0.00 4.94
8362 9127 3.585020 CAGCACACACGCAGGCAA 61.585 61.111 0.00 0.00 0.00 4.52
8400 9170 0.531753 AGCACACACACGCACATACA 60.532 50.000 0.00 0.00 0.00 2.29
8402 9172 1.840630 GCAGCACACACACGCACATA 61.841 55.000 0.00 0.00 0.00 2.29
8403 9173 3.024784 CAGCACACACACGCACAT 58.975 55.556 0.00 0.00 0.00 3.21
8408 9202 4.943591 GCACGCAGCACACACACG 62.944 66.667 0.00 0.00 44.79 4.49
8432 9226 1.153549 TGCACACACACACGCAGTA 60.154 52.632 0.00 0.00 41.61 2.74
8433 9227 2.749865 GTGCACACACACACGCAGT 61.750 57.895 13.17 0.00 46.61 4.40
8434 9228 2.023181 GTGCACACACACACGCAG 59.977 61.111 13.17 0.00 46.61 5.18
8457 9251 1.125274 CACACGCAACAACACACACG 61.125 55.000 0.00 0.00 0.00 4.49
8464 9258 0.109964 ACACACACACACGCAACAAC 60.110 50.000 0.00 0.00 0.00 3.32
8467 9273 1.867373 GCACACACACACACGCAAC 60.867 57.895 0.00 0.00 0.00 4.17
8468 9274 2.328099 TGCACACACACACACGCAA 61.328 52.632 0.00 0.00 0.00 4.85
8534 9360 3.379240 GCAACAACACATACACATGCAA 58.621 40.909 0.00 0.00 35.39 4.08
8618 9444 2.087646 GACTCTTTTGCCCCTCATGTC 58.912 52.381 0.00 0.00 0.00 3.06
8650 9476 7.455641 TTTTCGTCCATTTTGAGCCTAAATA 57.544 32.000 0.00 0.00 0.00 1.40
8706 9532 7.125659 TGGAAAAGTTTTTCTTCCCTCTTTGAT 59.874 33.333 14.85 0.00 44.49 2.57
8712 9538 5.127194 ACACTGGAAAAGTTTTTCTTCCCTC 59.873 40.000 14.85 1.27 44.49 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.