Multiple sequence alignment - TraesCS6A01G226400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G226400 chr6A 100.000 2312 0 0 1 2312 426216547 426214236 0.000000e+00 4270.0
1 TraesCS6A01G226400 chr6B 93.674 822 35 8 682 1496 459147944 459148755 0.000000e+00 1214.0
2 TraesCS6A01G226400 chr6B 90.444 586 47 7 1709 2289 459161627 459162208 0.000000e+00 763.0
3 TraesCS6A01G226400 chr6B 97.436 39 1 0 1637 1675 459161580 459161618 1.480000e-07 67.6
4 TraesCS6A01G226400 chr6D 91.187 817 61 7 1495 2309 295047165 295047972 0.000000e+00 1099.0
5 TraesCS6A01G226400 chr6D 91.595 464 21 8 1003 1458 294964207 294964660 1.950000e-175 625.0
6 TraesCS6A01G226400 chr6D 89.641 502 28 9 1003 1496 294624517 294625002 3.260000e-173 617.0
7 TraesCS6A01G226400 chr6D 94.103 390 19 1 850 1239 295045065 295045450 7.110000e-165 590.0
8 TraesCS6A01G226400 chr6D 89.848 394 34 6 340 732 294961506 294961894 3.430000e-138 501.0
9 TraesCS6A01G226400 chr6D 86.744 347 44 2 1 346 295042701 295043046 3.600000e-103 385.0
10 TraesCS6A01G226400 chr6D 92.537 268 10 4 1230 1496 295046841 295047099 2.170000e-100 375.0
11 TraesCS6A01G226400 chr6D 94.583 240 10 2 603 839 295044555 295044794 3.630000e-98 368.0
12 TraesCS6A01G226400 chr6D 89.362 282 24 1 338 613 295043075 295043356 1.310000e-92 350.0
13 TraesCS6A01G226400 chr6D 87.778 270 23 5 695 961 294624161 294624423 8.020000e-80 307.0
14 TraesCS6A01G226400 chr6D 89.583 240 19 2 725 961 294963877 294964113 1.340000e-77 300.0
15 TraesCS6A01G226400 chr1B 84.058 345 46 4 1 342 529542760 529543098 7.970000e-85 324.0
16 TraesCS6A01G226400 chr1B 88.235 85 9 1 262 346 487944296 487944379 1.460000e-17 100.0
17 TraesCS6A01G226400 chr5B 89.583 96 8 2 252 346 479842570 479842476 1.120000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G226400 chr6A 426214236 426216547 2311 True 4270.000000 4270 100.000000 1 2312 1 chr6A.!!$R1 2311
1 TraesCS6A01G226400 chr6B 459147944 459148755 811 False 1214.000000 1214 93.674000 682 1496 1 chr6B.!!$F1 814
2 TraesCS6A01G226400 chr6B 459161580 459162208 628 False 415.300000 763 93.940000 1637 2289 2 chr6B.!!$F2 652
3 TraesCS6A01G226400 chr6D 295042701 295047972 5271 False 527.833333 1099 91.419333 1 2309 6 chr6D.!!$F3 2308
4 TraesCS6A01G226400 chr6D 294961506 294964660 3154 False 475.333333 625 90.342000 340 1458 3 chr6D.!!$F2 1118
5 TraesCS6A01G226400 chr6D 294624161 294625002 841 False 462.000000 617 88.709500 695 1496 2 chr6D.!!$F1 801

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
919 4432 0.108567 GAAGAGAGGACGAGGGCAAC 60.109 60.0 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1739 6784 0.03759 AGTCAAACATAAGGCGGCCA 59.962 50.0 23.09 0.6 0.0 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.980702 CCCAGCCAAGCAGCCACA 62.981 66.667 0.00 0.00 0.00 4.17
37 38 4.208403 AGCCAAGCAGCCACACCA 62.208 61.111 0.00 0.00 0.00 4.17
48 49 2.821810 CACACCACGCACACCACA 60.822 61.111 0.00 0.00 0.00 4.17
49 50 2.045829 ACACCACGCACACCACAA 60.046 55.556 0.00 0.00 0.00 3.33
51 52 3.199190 ACCACGCACACCACAACG 61.199 61.111 0.00 0.00 0.00 4.10
57 58 2.830285 GCACACCACAACGACCACC 61.830 63.158 0.00 0.00 0.00 4.61
113 115 4.071875 TGTACGCGAACCGGCCAT 62.072 61.111 15.93 0.00 42.52 4.40
152 154 4.899239 GCCAGATCCCCGCACTCG 62.899 72.222 0.00 0.00 0.00 4.18
154 156 3.842923 CAGATCCCCGCACTCGCT 61.843 66.667 0.00 0.00 35.30 4.93
156 158 1.756950 AGATCCCCGCACTCGCTAA 60.757 57.895 0.00 0.00 35.30 3.09
163 165 2.260434 GCACTCGCTAACCGACCA 59.740 61.111 0.00 0.00 41.89 4.02
193 195 2.191641 GCTGCCCCTCACCAGATC 59.808 66.667 0.00 0.00 0.00 2.75
195 197 3.083349 TGCCCCTCACCAGATCCG 61.083 66.667 0.00 0.00 0.00 4.18
233 235 2.827642 GCCTCCATGCACAGCCTC 60.828 66.667 0.00 0.00 0.00 4.70
236 238 4.783621 TCCATGCACAGCCTCGGC 62.784 66.667 0.00 0.00 42.33 5.54
329 331 2.436115 GGGCGAAGGAGGAAACGG 60.436 66.667 0.00 0.00 0.00 4.44
335 337 4.677151 AGGAGGAAACGGGCCCCT 62.677 66.667 18.66 6.72 0.00 4.79
374 412 2.043941 GGTGGGGAGGGTGGGTAT 59.956 66.667 0.00 0.00 0.00 2.73
410 448 2.607892 GCGTTTGCTCTTGAGCCGT 61.608 57.895 18.48 0.00 38.39 5.68
464 502 3.119884 TGTTGCTCGTGCTATGGAAAATG 60.120 43.478 11.19 0.00 40.48 2.32
487 525 3.263261 GGGTTTCTCAAAACGCCAAAAA 58.737 40.909 6.79 0.00 46.87 1.94
528 572 8.553085 TCTCTCTCCAAATGATGTAATTAGGA 57.447 34.615 0.00 0.00 0.00 2.94
840 4089 3.425713 CGCGTTCATGCAGCCACT 61.426 61.111 0.00 0.00 34.15 4.00
871 4380 9.639601 TCTATTATATAAACTCAACATCTGCGG 57.360 33.333 0.00 0.00 0.00 5.69
918 4431 0.251832 AGAAGAGAGGACGAGGGCAA 60.252 55.000 0.00 0.00 0.00 4.52
919 4432 0.108567 GAAGAGAGGACGAGGGCAAC 60.109 60.000 0.00 0.00 0.00 4.17
933 4446 2.825836 CAACCAGCGCCTCATCCC 60.826 66.667 2.29 0.00 0.00 3.85
990 4513 2.669391 GCAAGAACCAGCAAAGATTCGG 60.669 50.000 0.00 0.00 0.00 4.30
1042 4607 2.592993 TTCTTGGTGGGCGAGGAGG 61.593 63.158 0.00 0.00 0.00 4.30
1043 4608 3.322466 CTTGGTGGGCGAGGAGGT 61.322 66.667 0.00 0.00 0.00 3.85
1044 4609 3.612247 CTTGGTGGGCGAGGAGGTG 62.612 68.421 0.00 0.00 0.00 4.00
1322 6290 4.447138 TTGTTGTTTAGGATCCACCACT 57.553 40.909 15.82 0.00 42.04 4.00
1407 6380 4.806330 TCTAGAAAAAGGTCAGCACGTAG 58.194 43.478 0.00 0.00 0.00 3.51
1464 6442 5.521372 TGCAGACTCTTTATGTGATCGATTG 59.479 40.000 0.00 0.00 0.00 2.67
1465 6443 5.750547 GCAGACTCTTTATGTGATCGATTGA 59.249 40.000 0.00 0.00 0.00 2.57
1466 6444 6.292061 GCAGACTCTTTATGTGATCGATTGAC 60.292 42.308 0.00 0.07 0.00 3.18
1467 6445 6.977502 CAGACTCTTTATGTGATCGATTGACT 59.022 38.462 0.00 0.00 0.00 3.41
1468 6446 6.977502 AGACTCTTTATGTGATCGATTGACTG 59.022 38.462 0.00 0.00 0.00 3.51
1469 6447 6.867550 ACTCTTTATGTGATCGATTGACTGA 58.132 36.000 0.00 0.00 0.00 3.41
1547 6592 4.911514 ATTTGTTTTTACGCAGAGGTGT 57.088 36.364 0.00 0.00 41.49 4.16
1549 6594 2.907634 TGTTTTTACGCAGAGGTGTGA 58.092 42.857 0.00 0.00 38.44 3.58
1554 6599 5.508200 TTTTACGCAGAGGTGTGATTTTT 57.492 34.783 0.00 0.00 38.44 1.94
1560 6605 4.213270 CGCAGAGGTGTGATTTTTGACTAA 59.787 41.667 0.00 0.00 36.14 2.24
1566 6611 5.820947 AGGTGTGATTTTTGACTAAAGACGT 59.179 36.000 0.00 0.00 0.00 4.34
1567 6612 6.018180 AGGTGTGATTTTTGACTAAAGACGTC 60.018 38.462 7.70 7.70 0.00 4.34
1568 6613 5.839239 GTGTGATTTTTGACTAAAGACGTCG 59.161 40.000 10.46 0.00 34.17 5.12
1569 6614 4.839174 GTGATTTTTGACTAAAGACGTCGC 59.161 41.667 10.46 0.00 34.17 5.19
1570 6615 4.508492 TGATTTTTGACTAAAGACGTCGCA 59.492 37.500 10.46 0.00 34.17 5.10
1571 6616 4.861389 TTTTTGACTAAAGACGTCGCAA 57.139 36.364 10.46 6.44 34.17 4.85
1572 6617 5.412526 TTTTTGACTAAAGACGTCGCAAT 57.587 34.783 10.46 0.27 34.17 3.56
1575 6620 2.734606 TGACTAAAGACGTCGCAATTGG 59.265 45.455 10.46 8.75 34.17 3.16
1580 6625 2.031919 ACGTCGCAATTGGCAGGA 59.968 55.556 7.72 0.00 45.17 3.86
1601 6646 2.183679 TGGCAAAGTGTGGGTCTTTTT 58.816 42.857 0.00 0.00 33.58 1.94
1609 6654 0.104120 GTGGGTCTTTTTGTGGCCAC 59.896 55.000 29.67 29.67 0.00 5.01
1616 6661 0.745128 TTTTTGTGGCCACGACGAGT 60.745 50.000 30.07 0.00 0.00 4.18
1627 6672 3.323243 CCACGACGAGTTTAATTCCACT 58.677 45.455 0.00 0.00 0.00 4.00
1719 6764 8.774586 GTTGATGAGTACTGTTAACATGTCTTT 58.225 33.333 9.13 0.76 0.00 2.52
1739 6784 6.369065 GTCTTTTTCACATATTCTCGTGAGGT 59.631 38.462 0.00 0.00 42.73 3.85
1791 6840 5.003804 TCTCAGAACAATGAGGGTTTTAGC 58.996 41.667 4.05 0.00 45.60 3.09
1792 6841 4.724399 TCAGAACAATGAGGGTTTTAGCA 58.276 39.130 0.00 0.00 0.00 3.49
1793 6842 4.761739 TCAGAACAATGAGGGTTTTAGCAG 59.238 41.667 0.00 0.00 0.00 4.24
1812 6861 5.351458 AGCAGAAAGAAAAATGTGTCAACC 58.649 37.500 0.00 0.00 0.00 3.77
1817 6866 3.230976 AGAAAAATGTGTCAACCCCTCC 58.769 45.455 0.00 0.00 0.00 4.30
1880 6931 6.309980 GTCTATCATGCATAGGATGAAAGACG 59.690 42.308 0.00 0.00 35.92 4.18
1882 6933 3.134623 TCATGCATAGGATGAAAGACGGT 59.865 43.478 0.00 0.00 0.00 4.83
1900 6951 2.726760 CGGTGACTTTCTATGATAGCGC 59.273 50.000 0.00 0.00 0.00 5.92
1918 6970 2.557317 CGCCTACCCGACAAAACATAT 58.443 47.619 0.00 0.00 0.00 1.78
1922 6974 2.507407 ACCCGACAAAACATATGGCT 57.493 45.000 7.80 0.00 0.00 4.75
1936 6988 6.567602 ACATATGGCTAGAGAGGTTTTCTT 57.432 37.500 7.80 0.00 35.87 2.52
1947 6999 4.065789 AGAGGTTTTCTTTCGTCATGGAC 58.934 43.478 0.00 0.00 29.61 4.02
1951 7003 9.768435 AGAGGTTTTCTTTCGTCATGGACGTTA 62.768 40.741 17.09 5.65 44.09 3.18
1979 7031 2.415983 TCCGAATATGACCTCCCCAT 57.584 50.000 0.00 0.00 0.00 4.00
2066 7118 6.351711 TGCACATCTTATTATGCAGAGAACT 58.648 36.000 0.00 0.00 42.92 3.01
2069 7121 6.204301 CACATCTTATTATGCAGAGAACTGGG 59.796 42.308 0.00 0.00 43.62 4.45
2074 7126 2.322355 ATGCAGAGAACTGGGATTCG 57.678 50.000 0.00 0.00 43.62 3.34
2080 7132 0.608640 AGAACTGGGATTCGCTCGTT 59.391 50.000 2.19 5.67 33.57 3.85
2088 7140 0.095417 GATTCGCTCGTTGAGGTTGC 59.905 55.000 0.00 0.00 0.00 4.17
2114 7166 6.653020 TCCCCTCGATATATTGATTGAATGG 58.347 40.000 3.01 0.70 0.00 3.16
2231 7283 3.057596 ACGTGCAATGGTTTACAATCCAG 60.058 43.478 0.00 0.00 37.14 3.86
2237 7289 5.713025 CAATGGTTTACAATCCAGTTCTGG 58.287 41.667 12.20 12.20 37.14 3.86
2238 7290 3.153919 TGGTTTACAATCCAGTTCTGGC 58.846 45.455 13.44 0.00 0.00 4.85
2280 7332 1.728971 CTGCTTCACTCAACGGACATC 59.271 52.381 0.00 0.00 0.00 3.06
2309 7361 3.120786 GGTTCCGTTGAATTGTCGTACAG 60.121 47.826 0.00 0.00 31.98 2.74
2310 7362 3.646611 TCCGTTGAATTGTCGTACAGA 57.353 42.857 0.00 0.00 0.00 3.41
2311 7363 3.979948 TCCGTTGAATTGTCGTACAGAA 58.020 40.909 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 3.315142 CTGCTTGGCTGGGCGACTA 62.315 63.158 0.00 0.00 0.00 2.59
34 35 3.199190 CGTTGTGGTGTGCGTGGT 61.199 61.111 0.00 0.00 0.00 4.16
37 38 2.893404 GGTCGTTGTGGTGTGCGT 60.893 61.111 0.00 0.00 0.00 5.24
68 70 3.484806 TGGTGACCACGGTGGCTT 61.485 61.111 26.62 8.66 42.67 4.35
77 79 4.555709 GGGCGTGTGTGGTGACCA 62.556 66.667 0.00 0.00 0.00 4.02
98 100 3.761140 TCATGGCCGGTTCGCGTA 61.761 61.111 5.77 0.00 0.00 4.42
113 115 1.528076 GTGTGGCACATGGTGGTCA 60.528 57.895 24.95 0.00 44.52 4.02
148 150 2.564975 CGTGGTCGGTTAGCGAGT 59.435 61.111 6.80 0.00 0.00 4.18
176 178 2.191641 GATCTGGTGAGGGGCAGC 59.808 66.667 0.00 0.00 45.12 5.25
178 180 3.083349 CGGATCTGGTGAGGGGCA 61.083 66.667 0.00 0.00 0.00 5.36
180 182 4.227134 CGCGGATCTGGTGAGGGG 62.227 72.222 3.14 0.00 0.00 4.79
215 217 3.633609 GAGGCTGTGCATGGAGGCA 62.634 63.158 16.04 0.00 42.53 4.75
216 218 2.827642 GAGGCTGTGCATGGAGGC 60.828 66.667 0.00 8.37 35.02 4.70
316 318 2.045242 GGGCCCGTTTCCTCCTTC 60.045 66.667 5.69 0.00 0.00 3.46
344 382 4.504916 CCACCTCCTCTCGCAGCG 62.505 72.222 9.06 9.06 0.00 5.18
353 391 4.354943 CCACCCTCCCCACCTCCT 62.355 72.222 0.00 0.00 0.00 3.69
359 397 2.043772 CCATACCCACCCTCCCCA 59.956 66.667 0.00 0.00 0.00 4.96
427 465 2.763645 AACAACAACCCCCGGCTCT 61.764 57.895 0.00 0.00 0.00 4.09
464 502 0.741915 TGGCGTTTTGAGAAACCCAC 59.258 50.000 7.62 0.00 41.66 4.61
487 525 5.479027 GGAGAGAGAGACAAGTTCCTAAAGT 59.521 44.000 0.00 0.00 0.00 2.66
538 582 3.006323 GTGTGACAAGAGAGTGAGGTCAT 59.994 47.826 0.00 0.00 40.23 3.06
658 1911 0.464554 GGCTCTAGCGGGCTGAATTT 60.465 55.000 2.86 0.00 43.26 1.82
722 3967 4.948621 TCTTCCGTTTGACCCAAGTTTTTA 59.051 37.500 0.00 0.00 0.00 1.52
723 3968 3.764972 TCTTCCGTTTGACCCAAGTTTTT 59.235 39.130 0.00 0.00 0.00 1.94
807 4056 1.226407 GCGCTGCTTTCCCGAATTC 60.226 57.895 0.00 0.00 0.00 2.17
840 4089 9.338291 GATGTTGAGTTTATATAATAGACGCGA 57.662 33.333 15.93 0.00 0.00 5.87
871 4380 0.947244 CTGGTCAGACTTTGTGGTGC 59.053 55.000 0.00 0.00 0.00 5.01
919 4432 4.559063 CAGGGGATGAGGCGCTGG 62.559 72.222 7.64 0.00 0.00 4.85
920 4433 3.335356 AACAGGGGATGAGGCGCTG 62.335 63.158 7.64 0.00 0.00 5.18
921 4434 3.011517 AACAGGGGATGAGGCGCT 61.012 61.111 7.64 0.00 0.00 5.92
990 4513 3.568853 CCTTCTTGATCATGGATCCAAGC 59.431 47.826 20.67 6.64 38.20 4.01
1119 4687 0.809385 CGTACTTCTCTTCCGCCTCA 59.191 55.000 0.00 0.00 0.00 3.86
1231 4799 0.179004 TGATGGTGGTGTTGGTGACC 60.179 55.000 0.00 0.00 0.00 4.02
1322 6290 0.320946 AACTAAACCTAGCCGCGCAA 60.321 50.000 8.75 0.00 0.00 4.85
1407 6380 3.489785 CAGTTCGGTCAAACTAGACACAC 59.510 47.826 0.00 0.00 40.29 3.82
1464 6442 6.541111 ACAAAATTTTACTCGGTCTCAGTC 57.459 37.500 2.44 0.00 0.00 3.51
1465 6443 7.713942 AGTTACAAAATTTTACTCGGTCTCAGT 59.286 33.333 2.44 0.00 0.00 3.41
1466 6444 8.084590 AGTTACAAAATTTTACTCGGTCTCAG 57.915 34.615 2.44 0.00 0.00 3.35
1467 6445 9.545105 TTAGTTACAAAATTTTACTCGGTCTCA 57.455 29.630 2.44 0.00 0.00 3.27
1468 6446 9.803130 GTTAGTTACAAAATTTTACTCGGTCTC 57.197 33.333 2.44 0.00 0.00 3.36
1469 6447 9.551734 AGTTAGTTACAAAATTTTACTCGGTCT 57.448 29.630 2.44 0.00 0.00 3.85
1522 6567 7.221067 CACACCTCTGCGTAAAAACAAATAAAA 59.779 33.333 0.00 0.00 0.00 1.52
1538 6583 5.689383 TTAGTCAAAAATCACACCTCTGC 57.311 39.130 0.00 0.00 0.00 4.26
1547 6592 4.508492 TGCGACGTCTTTAGTCAAAAATCA 59.492 37.500 14.70 0.00 38.46 2.57
1549 6594 5.412526 TTGCGACGTCTTTAGTCAAAAAT 57.587 34.783 14.70 0.00 38.46 1.82
1554 6599 2.734606 CCAATTGCGACGTCTTTAGTCA 59.265 45.455 14.70 0.00 38.46 3.41
1560 6605 1.577328 CCTGCCAATTGCGACGTCTT 61.577 55.000 14.70 0.00 45.60 3.01
1566 6611 2.417257 GCCATCCTGCCAATTGCGA 61.417 57.895 0.00 0.00 45.60 5.10
1567 6612 2.105528 GCCATCCTGCCAATTGCG 59.894 61.111 0.00 0.00 45.60 4.85
1568 6613 0.036199 TTTGCCATCCTGCCAATTGC 60.036 50.000 0.00 0.00 41.77 3.56
1569 6614 1.276989 ACTTTGCCATCCTGCCAATTG 59.723 47.619 0.00 0.00 0.00 2.32
1570 6615 1.276989 CACTTTGCCATCCTGCCAATT 59.723 47.619 0.00 0.00 0.00 2.32
1571 6616 0.899720 CACTTTGCCATCCTGCCAAT 59.100 50.000 0.00 0.00 0.00 3.16
1572 6617 0.469705 ACACTTTGCCATCCTGCCAA 60.470 50.000 0.00 0.00 0.00 4.52
1575 6620 1.588082 CCACACTTTGCCATCCTGC 59.412 57.895 0.00 0.00 0.00 4.85
1580 6625 2.086610 AAAGACCCACACTTTGCCAT 57.913 45.000 0.00 0.00 36.43 4.40
1601 6646 0.104487 TTAAACTCGTCGTGGCCACA 59.896 50.000 34.16 19.11 0.00 4.17
1609 6654 6.021055 CATACAGTGGAATTAAACTCGTCG 57.979 41.667 0.00 0.00 0.00 5.12
1698 6743 8.609176 GTGAAAAAGACATGTTAACAGTACTCA 58.391 33.333 14.65 5.84 0.00 3.41
1700 6745 8.500753 TGTGAAAAAGACATGTTAACAGTACT 57.499 30.769 14.65 9.46 0.00 2.73
1719 6764 4.503910 CCACCTCACGAGAATATGTGAAA 58.496 43.478 0.00 0.00 43.91 2.69
1739 6784 0.037590 AGTCAAACATAAGGCGGCCA 59.962 50.000 23.09 0.60 0.00 5.36
1772 6818 4.985538 TCTGCTAAAACCCTCATTGTTCT 58.014 39.130 0.00 0.00 0.00 3.01
1791 6840 5.049828 GGGGTTGACACATTTTTCTTTCTG 58.950 41.667 0.00 0.00 0.00 3.02
1792 6841 4.962362 AGGGGTTGACACATTTTTCTTTCT 59.038 37.500 0.00 0.00 0.00 2.52
1793 6842 5.276461 AGGGGTTGACACATTTTTCTTTC 57.724 39.130 0.00 0.00 0.00 2.62
1812 6861 1.597742 CATGAATAACCTGCGGAGGG 58.402 55.000 27.88 9.37 44.84 4.30
1817 6866 2.097954 ACACATGCATGAATAACCTGCG 59.902 45.455 32.75 9.56 41.75 5.18
1850 6899 6.233434 TCATCCTATGCATGATAGACCAAAC 58.767 40.000 10.16 0.00 36.84 2.93
1880 6931 3.060602 GGCGCTATCATAGAAAGTCACC 58.939 50.000 7.64 0.00 0.00 4.02
1882 6933 4.022242 GGTAGGCGCTATCATAGAAAGTCA 60.022 45.833 7.64 0.00 0.00 3.41
1896 6947 1.670083 GTTTTGTCGGGTAGGCGCT 60.670 57.895 7.64 0.00 0.00 5.92
1900 6951 2.616842 GCCATATGTTTTGTCGGGTAGG 59.383 50.000 1.24 0.00 0.00 3.18
1918 6970 3.323979 ACGAAAGAAAACCTCTCTAGCCA 59.676 43.478 0.00 0.00 31.02 4.75
1922 6974 5.245301 TCCATGACGAAAGAAAACCTCTCTA 59.755 40.000 0.00 0.00 31.02 2.43
1947 6999 8.242053 AGGTCATATTCGGATATTACACTAACG 58.758 37.037 9.68 0.00 28.28 3.18
1951 7003 6.154706 GGGAGGTCATATTCGGATATTACACT 59.845 42.308 9.68 5.04 28.28 3.55
1959 7011 2.415983 TGGGGAGGTCATATTCGGAT 57.584 50.000 0.00 0.00 0.00 4.18
1979 7031 7.558444 TGAAAAAGAAAAGGTACAAGCTAGGAA 59.442 33.333 0.00 0.00 0.00 3.36
2028 7080 9.758651 AATAAGATGTGCATAGTTAATACGTCA 57.241 29.630 0.00 0.00 31.45 4.35
2066 7118 1.218047 CCTCAACGAGCGAATCCCA 59.782 57.895 0.00 0.00 0.00 4.37
2069 7121 0.095417 GCAACCTCAACGAGCGAATC 59.905 55.000 0.00 0.00 0.00 2.52
2074 7126 1.648467 GGGATGCAACCTCAACGAGC 61.648 60.000 13.30 0.00 0.00 5.03
2088 7140 7.228108 CCATTCAATCAATATATCGAGGGGATG 59.772 40.741 0.00 0.00 36.55 3.51
2231 7283 2.421424 GGATCACTTGTCATGCCAGAAC 59.579 50.000 0.00 0.00 0.00 3.01
2237 7289 4.918037 GATCTTTGGATCACTTGTCATGC 58.082 43.478 0.00 0.00 45.54 4.06
2280 7332 4.870363 ACAATTCAACGGAACCTTTCATG 58.130 39.130 0.00 0.00 35.46 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.