Multiple sequence alignment - TraesCS6A01G225400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G225400 chr6A 100.000 4478 0 0 1 4478 423536555 423532078 0.000000e+00 8270.0
1 TraesCS6A01G225400 chr6A 82.012 1034 161 21 2276 3295 423523162 423522140 0.000000e+00 856.0
2 TraesCS6A01G225400 chr6A 85.499 531 67 6 2 524 407081829 407081301 3.050000e-151 545.0
3 TraesCS6A01G225400 chr6D 94.754 1525 42 20 715 2220 296826846 296825341 0.000000e+00 2338.0
4 TraesCS6A01G225400 chr6D 94.126 1464 69 5 2219 3677 296825306 296823855 0.000000e+00 2211.0
5 TraesCS6A01G225400 chr6D 82.389 988 157 14 2318 3295 296752970 296751990 0.000000e+00 845.0
6 TraesCS6A01G225400 chr6D 91.667 216 11 2 516 724 296827085 296826870 4.380000e-75 292.0
7 TraesCS6A01G225400 chr6D 75.820 579 124 15 2510 3079 452907794 452908365 3.410000e-71 279.0
8 TraesCS6A01G225400 chr6B 94.419 1523 44 18 715 2220 460206331 460207829 0.000000e+00 2303.0
9 TraesCS6A01G225400 chr6B 97.062 885 10 3 2250 3127 460209052 460209927 0.000000e+00 1476.0
10 TraesCS6A01G225400 chr6B 82.604 960 150 14 2346 3295 460275802 460276754 0.000000e+00 832.0
11 TraesCS6A01G225400 chr6B 89.173 508 44 6 3123 3627 460211096 460211595 1.370000e-174 623.0
12 TraesCS6A01G225400 chr6B 93.780 209 13 0 516 724 460206099 460206307 9.350000e-82 315.0
13 TraesCS6A01G225400 chr3A 90.433 554 41 4 3716 4260 28367060 28366510 0.000000e+00 719.0
14 TraesCS6A01G225400 chr3A 91.111 45 3 1 3676 3720 119470916 119470873 4.840000e-05 60.2
15 TraesCS6A01G225400 chr5D 89.685 572 36 7 3708 4260 331557512 331556945 0.000000e+00 708.0
16 TraesCS6A01G225400 chr5D 78.322 1061 194 25 2277 3314 106520967 106519920 0.000000e+00 652.0
17 TraesCS6A01G225400 chr5D 86.767 529 57 9 2 519 93059272 93058746 1.080000e-160 577.0
18 TraesCS6A01G225400 chr5D 83.486 109 18 0 4358 4466 270283721 270283613 7.920000e-18 102.0
19 TraesCS6A01G225400 chr5D 89.362 47 4 1 3676 3722 386648835 386648880 1.740000e-04 58.4
20 TraesCS6A01G225400 chr5D 91.111 45 1 3 3670 3712 408774274 408774317 1.740000e-04 58.4
21 TraesCS6A01G225400 chr5D 94.737 38 1 1 1515 1552 447432357 447432321 1.740000e-04 58.4
22 TraesCS6A01G225400 chr5D 94.595 37 2 0 3676 3712 541992634 541992598 1.740000e-04 58.4
23 TraesCS6A01G225400 chr5B 92.813 487 32 3 3743 4228 223995799 223995315 0.000000e+00 702.0
24 TraesCS6A01G225400 chr5B 78.249 1062 193 25 2277 3314 115418492 115419539 0.000000e+00 647.0
25 TraesCS6A01G225400 chr5B 71.653 829 176 49 1079 1885 115413033 115413824 1.660000e-39 174.0
26 TraesCS6A01G225400 chr5B 94.737 38 1 1 1515 1552 545923681 545923645 1.740000e-04 58.4
27 TraesCS6A01G225400 chr7D 90.909 528 34 5 3743 4260 358478660 358478137 0.000000e+00 697.0
28 TraesCS6A01G225400 chr7D 86.476 525 61 7 2 519 55575543 55576064 6.500000e-158 568.0
29 TraesCS6A01G225400 chr7D 94.872 39 2 0 2686 2724 194224801 194224839 1.340000e-05 62.1
30 TraesCS6A01G225400 chr3B 92.608 487 33 3 3743 4228 817453494 817453010 0.000000e+00 697.0
31 TraesCS6A01G225400 chr3B 91.992 487 36 3 3743 4228 814708692 814709176 0.000000e+00 680.0
32 TraesCS6A01G225400 chr3B 88.889 459 32 7 3806 4260 733933001 733932558 8.470000e-152 547.0
33 TraesCS6A01G225400 chr3B 88.671 459 33 7 3806 4260 734001030 734000587 3.940000e-150 542.0
34 TraesCS6A01G225400 chr3B 92.857 42 1 2 3663 3703 485691386 485691426 4.840000e-05 60.2
35 TraesCS6A01G225400 chr5A 78.437 1062 191 29 2277 3314 109966129 109967176 0.000000e+00 658.0
36 TraesCS6A01G225400 chr5A 86.981 530 54 9 3 520 25878989 25879515 2.320000e-162 582.0
37 TraesCS6A01G225400 chr5A 86.364 528 58 10 2 517 674580353 674579828 8.410000e-157 564.0
38 TraesCS6A01G225400 chr5A 71.807 830 173 48 1079 1885 109957130 109957921 3.560000e-41 180.0
39 TraesCS6A01G225400 chr2D 88.155 515 51 6 2 508 422518580 422518068 4.950000e-169 604.0
40 TraesCS6A01G225400 chr2D 82.609 115 20 0 4352 4466 5752414 5752528 7.920000e-18 102.0
41 TraesCS6A01G225400 chr2D 83.929 112 13 3 4358 4466 264869219 264869110 7.920000e-18 102.0
42 TraesCS6A01G225400 chr2D 82.727 110 17 2 4358 4466 329160843 329160735 3.690000e-16 97.1
43 TraesCS6A01G225400 chr3D 87.006 531 58 7 2 523 499967454 499966926 4.990000e-164 588.0
44 TraesCS6A01G225400 chr3D 86.578 529 56 10 2 519 391255480 391256004 1.810000e-158 569.0
45 TraesCS6A01G225400 chr3D 86.476 525 56 11 2 516 576256138 576256657 3.020000e-156 562.0
46 TraesCS6A01G225400 chr3D 85.455 110 12 3 4358 4465 102184699 102184592 1.320000e-20 111.0
47 TraesCS6A01G225400 chrUn 88.671 459 33 7 3806 4260 296614430 296614873 3.940000e-150 542.0
48 TraesCS6A01G225400 chrUn 89.381 113 3 1 4148 4260 310684713 310684816 2.810000e-27 134.0
49 TraesCS6A01G225400 chr1B 83.636 110 17 1 4358 4466 401142934 401142825 7.920000e-18 102.0
50 TraesCS6A01G225400 chr1B 87.500 48 5 1 3676 3723 120992560 120992514 2.000000e-03 54.7
51 TraesCS6A01G225400 chr2B 83.636 110 12 5 4358 4464 397942782 397942676 1.030000e-16 99.0
52 TraesCS6A01G225400 chr4B 83.036 112 13 5 4358 4466 4308522 4308414 3.690000e-16 97.1
53 TraesCS6A01G225400 chr1D 82.727 110 18 1 4358 4466 298146013 298145904 3.690000e-16 97.1
54 TraesCS6A01G225400 chr7A 97.297 37 1 0 3676 3712 520915651 520915615 3.740000e-06 63.9
55 TraesCS6A01G225400 chr7B 94.595 37 2 0 3676 3712 731107272 731107236 1.740000e-04 58.4
56 TraesCS6A01G225400 chr4D 94.595 37 2 0 3676 3712 499678185 499678149 1.740000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G225400 chr6A 423532078 423536555 4477 True 8270.000000 8270 100.000000 1 4478 1 chr6A.!!$R3 4477
1 TraesCS6A01G225400 chr6A 423522140 423523162 1022 True 856.000000 856 82.012000 2276 3295 1 chr6A.!!$R2 1019
2 TraesCS6A01G225400 chr6A 407081301 407081829 528 True 545.000000 545 85.499000 2 524 1 chr6A.!!$R1 522
3 TraesCS6A01G225400 chr6D 296823855 296827085 3230 True 1613.666667 2338 93.515667 516 3677 3 chr6D.!!$R2 3161
4 TraesCS6A01G225400 chr6D 296751990 296752970 980 True 845.000000 845 82.389000 2318 3295 1 chr6D.!!$R1 977
5 TraesCS6A01G225400 chr6D 452907794 452908365 571 False 279.000000 279 75.820000 2510 3079 1 chr6D.!!$F1 569
6 TraesCS6A01G225400 chr6B 460206099 460211595 5496 False 1179.250000 2303 93.608500 516 3627 4 chr6B.!!$F2 3111
7 TraesCS6A01G225400 chr6B 460275802 460276754 952 False 832.000000 832 82.604000 2346 3295 1 chr6B.!!$F1 949
8 TraesCS6A01G225400 chr3A 28366510 28367060 550 True 719.000000 719 90.433000 3716 4260 1 chr3A.!!$R1 544
9 TraesCS6A01G225400 chr5D 331556945 331557512 567 True 708.000000 708 89.685000 3708 4260 1 chr5D.!!$R4 552
10 TraesCS6A01G225400 chr5D 106519920 106520967 1047 True 652.000000 652 78.322000 2277 3314 1 chr5D.!!$R2 1037
11 TraesCS6A01G225400 chr5D 93058746 93059272 526 True 577.000000 577 86.767000 2 519 1 chr5D.!!$R1 517
12 TraesCS6A01G225400 chr5B 115418492 115419539 1047 False 647.000000 647 78.249000 2277 3314 1 chr5B.!!$F2 1037
13 TraesCS6A01G225400 chr7D 358478137 358478660 523 True 697.000000 697 90.909000 3743 4260 1 chr7D.!!$R1 517
14 TraesCS6A01G225400 chr7D 55575543 55576064 521 False 568.000000 568 86.476000 2 519 1 chr7D.!!$F1 517
15 TraesCS6A01G225400 chr5A 109966129 109967176 1047 False 658.000000 658 78.437000 2277 3314 1 chr5A.!!$F3 1037
16 TraesCS6A01G225400 chr5A 25878989 25879515 526 False 582.000000 582 86.981000 3 520 1 chr5A.!!$F1 517
17 TraesCS6A01G225400 chr5A 674579828 674580353 525 True 564.000000 564 86.364000 2 517 1 chr5A.!!$R1 515
18 TraesCS6A01G225400 chr2D 422518068 422518580 512 True 604.000000 604 88.155000 2 508 1 chr2D.!!$R3 506
19 TraesCS6A01G225400 chr3D 499966926 499967454 528 True 588.000000 588 87.006000 2 523 1 chr3D.!!$R2 521
20 TraesCS6A01G225400 chr3D 391255480 391256004 524 False 569.000000 569 86.578000 2 519 1 chr3D.!!$F1 517
21 TraesCS6A01G225400 chr3D 576256138 576256657 519 False 562.000000 562 86.476000 2 516 1 chr3D.!!$F2 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
886 955 0.037326 TCTTGCCAGAATCGTCGCTT 60.037 50.0 0.00 0.00 0.0 4.68 F
968 1037 0.783579 CGACGGCAAGGCAAAATTTG 59.216 50.0 0.57 0.57 0.0 2.32 F
2039 2125 0.108138 ATCAGTTACCCGTGCTCTGC 60.108 55.0 0.00 0.00 0.0 4.26 F
2061 2147 1.453155 CTGGTACCTGCATCAACACC 58.547 55.0 14.36 0.00 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1940 2009 0.032678 AGCAGACCTCGGCAATATCG 59.967 55.0 0.21 0.00 39.54 2.92 R
2365 3651 0.037326 TGCTGCTTGAAGTACCTCCG 60.037 55.0 0.00 0.00 0.00 4.63 R
3330 5835 1.524008 CGGAACTCTTTTGGCCCCAC 61.524 60.0 0.00 0.00 0.00 4.61 R
3729 6242 1.581934 ATATGTATTGCAGCGCACGT 58.418 45.0 11.47 1.06 38.71 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 124 0.792640 GACTACGTCGACCTCGTCAA 59.207 55.000 10.58 0.00 41.72 3.18
124 126 2.604914 GACTACGTCGACCTCGTCAATA 59.395 50.000 10.58 0.00 41.72 1.90
157 162 4.681978 GCGGCCACTGAAGACGGT 62.682 66.667 2.24 0.00 35.84 4.83
258 276 1.262151 GCCGTTTAAGCGTGAAACTGA 59.738 47.619 10.88 0.00 35.13 3.41
261 279 2.221055 CGTTTAAGCGTGAAACTGAGCT 59.779 45.455 3.26 0.00 42.35 4.09
277 295 2.017049 GAGCTGTTTTATGGCCGTGAT 58.983 47.619 8.05 0.00 0.00 3.06
408 437 1.445582 GCTGCGTGTTAGGCGTACT 60.446 57.895 0.00 0.00 0.00 2.73
409 438 1.012486 GCTGCGTGTTAGGCGTACTT 61.012 55.000 0.00 0.00 0.00 2.24
411 440 2.805845 CTGCGTGTTAGGCGTACTTAT 58.194 47.619 0.00 0.00 0.00 1.73
423 452 3.554337 GGCGTACTTATGATCCAACGGAT 60.554 47.826 0.00 0.00 46.28 4.18
464 493 1.586154 CGTTGCCGCTCCAAAGGAAT 61.586 55.000 0.00 0.00 0.00 3.01
495 524 0.461693 AAACCGGACGTTCGTTTGGA 60.462 50.000 16.40 0.00 31.78 3.53
534 563 2.159435 GCCTAACAACAAAGTATGCGGG 60.159 50.000 0.00 0.00 0.00 6.13
538 567 2.423577 ACAACAAAGTATGCGGGAGAC 58.576 47.619 0.00 0.00 0.00 3.36
591 620 2.032681 AACGGCTGGCCTTGTCTC 59.967 61.111 3.32 0.00 0.00 3.36
621 650 4.183686 CCCGCGGCATCTTGCTTG 62.184 66.667 22.85 0.00 44.28 4.01
634 663 1.137194 TGCTTGCGCAATTGATCGG 59.863 52.632 25.26 11.20 44.62 4.18
647 683 2.851805 TGATCGGTCATGAGAGTTCG 57.148 50.000 0.00 0.00 0.00 3.95
653 689 0.802607 GTCATGAGAGTTCGTCGCCC 60.803 60.000 0.00 0.00 0.00 6.13
688 724 3.057548 TCGAGTACCGAGCGGCAA 61.058 61.111 9.14 0.00 43.23 4.52
717 786 2.710377 ACAAAGTAGGCATTCGCATGA 58.290 42.857 0.00 0.00 41.24 3.07
723 792 1.089920 AGGCATTCGCATGAACACTC 58.910 50.000 0.00 0.00 41.24 3.51
768 837 8.454106 TCAGTCTTTTTCAGTCTCTTCTTTTTG 58.546 33.333 0.00 0.00 0.00 2.44
886 955 0.037326 TCTTGCCAGAATCGTCGCTT 60.037 50.000 0.00 0.00 0.00 4.68
926 995 2.656947 TGCAGCCTCCAAACTAAAGT 57.343 45.000 0.00 0.00 0.00 2.66
927 996 3.780804 TGCAGCCTCCAAACTAAAGTA 57.219 42.857 0.00 0.00 0.00 2.24
928 997 4.093472 TGCAGCCTCCAAACTAAAGTAA 57.907 40.909 0.00 0.00 0.00 2.24
929 998 4.465886 TGCAGCCTCCAAACTAAAGTAAA 58.534 39.130 0.00 0.00 0.00 2.01
930 999 4.518970 TGCAGCCTCCAAACTAAAGTAAAG 59.481 41.667 0.00 0.00 0.00 1.85
968 1037 0.783579 CGACGGCAAGGCAAAATTTG 59.216 50.000 0.57 0.57 0.00 2.32
1127 1196 3.259751 GTACCCGTTCGGCATCGC 61.260 66.667 5.66 0.00 36.13 4.58
1341 1410 2.821366 GGGAGCAGCATGTGGACG 60.821 66.667 0.00 0.00 39.31 4.79
1830 1899 2.444624 CGTGTGCGTGGATTCGAGG 61.445 63.158 0.00 0.00 0.00 4.63
1885 1954 1.004979 GGTACCAAGGCAACCCATACA 59.995 52.381 7.15 0.00 37.17 2.29
1922 1991 3.394719 GAGGTCTGCTCTTCGTCTTTTT 58.605 45.455 0.00 0.00 0.00 1.94
1940 2009 8.083462 CGTCTTTTTCCTATTCCTATCCTACTC 58.917 40.741 0.00 0.00 0.00 2.59
1943 2012 8.722622 TTTTTCCTATTCCTATCCTACTCGAT 57.277 34.615 0.00 0.00 0.00 3.59
1946 2015 9.992442 TTTCCTATTCCTATCCTACTCGATATT 57.008 33.333 0.00 0.00 0.00 1.28
1947 2016 8.982091 TCCTATTCCTATCCTACTCGATATTG 57.018 38.462 0.00 0.00 0.00 1.90
1948 2017 7.502895 TCCTATTCCTATCCTACTCGATATTGC 59.497 40.741 0.00 0.00 0.00 3.56
1950 2019 3.945921 TCCTATCCTACTCGATATTGCCG 59.054 47.826 0.00 0.00 0.00 5.69
1951 2020 3.945921 CCTATCCTACTCGATATTGCCGA 59.054 47.826 0.00 0.00 34.61 5.54
1970 2056 4.449405 GCCGAGGTCTGCTATAAGAAATTC 59.551 45.833 0.00 0.00 0.00 2.17
1971 2057 5.601662 CCGAGGTCTGCTATAAGAAATTCA 58.398 41.667 0.00 0.00 0.00 2.57
1972 2058 5.694006 CCGAGGTCTGCTATAAGAAATTCAG 59.306 44.000 0.00 0.00 0.00 3.02
1973 2059 6.461648 CCGAGGTCTGCTATAAGAAATTCAGA 60.462 42.308 0.00 0.00 0.00 3.27
1974 2060 7.151308 CGAGGTCTGCTATAAGAAATTCAGAT 58.849 38.462 0.00 0.00 33.80 2.90
1975 2061 7.655328 CGAGGTCTGCTATAAGAAATTCAGATT 59.345 37.037 0.00 0.00 33.80 2.40
1976 2062 9.336171 GAGGTCTGCTATAAGAAATTCAGATTT 57.664 33.333 0.00 0.00 38.16 2.17
1977 2063 9.118300 AGGTCTGCTATAAGAAATTCAGATTTG 57.882 33.333 0.00 0.00 35.65 2.32
1978 2064 8.348507 GGTCTGCTATAAGAAATTCAGATTTGG 58.651 37.037 0.00 0.00 35.65 3.28
1979 2065 8.897752 GTCTGCTATAAGAAATTCAGATTTGGT 58.102 33.333 0.00 0.00 35.65 3.67
1980 2066 9.466497 TCTGCTATAAGAAATTCAGATTTGGTT 57.534 29.630 0.00 0.00 35.65 3.67
2039 2125 0.108138 ATCAGTTACCCGTGCTCTGC 60.108 55.000 0.00 0.00 0.00 4.26
2061 2147 1.453155 CTGGTACCTGCATCAACACC 58.547 55.000 14.36 0.00 0.00 4.16
2223 2349 4.985538 TCCCAAGAACAAGAAGTATGCTT 58.014 39.130 0.00 0.00 30.15 3.91
2365 3651 3.497031 GCCTCGCCACCGTAAAGC 61.497 66.667 0.00 0.00 35.54 3.51
2520 3812 3.553095 GAAGGGAGGCAACGGCACT 62.553 63.158 0.00 0.00 43.71 4.40
3251 5753 2.124403 GCAGTGCCTGGAGATGGG 60.124 66.667 2.85 0.00 31.21 4.00
3356 5861 2.689646 CCAAAAGAGTTCCGAGGAGAC 58.310 52.381 0.00 0.00 0.00 3.36
3385 5890 2.904866 TTGCTGTTGGGTCGCCAC 60.905 61.111 0.00 0.00 0.00 5.01
3399 5904 3.376078 CCACCGCCAGCAAGCAAT 61.376 61.111 0.00 0.00 0.00 3.56
3426 5931 2.610833 CGAGATTGAGCTTAGCAATGCA 59.389 45.455 8.35 0.00 36.19 3.96
3436 5941 3.611057 GCTTAGCAATGCATATGTCAGCC 60.611 47.826 8.35 0.00 0.00 4.85
3453 5958 0.249489 GCCTGGACGATTCTGCGTAT 60.249 55.000 0.00 0.00 45.72 3.06
3502 6007 2.709170 TTTTTCTTGCTTCCGGCGA 58.291 47.368 9.30 0.00 45.43 5.54
3525 6032 1.756950 CGGACCCTCCTGGATCGAA 60.757 63.158 0.00 0.00 38.00 3.71
3534 6041 3.624861 CCTCCTGGATCGAATTTTGTGAG 59.375 47.826 0.00 0.00 34.57 3.51
3540 6047 4.033932 TGGATCGAATTTTGTGAGCATACG 59.966 41.667 0.00 0.00 0.00 3.06
3543 6050 2.791158 CGAATTTTGTGAGCATACGGCC 60.791 50.000 0.00 0.00 46.50 6.13
3545 6052 1.164411 TTTTGTGAGCATACGGCCAG 58.836 50.000 2.24 0.00 46.50 4.85
3599 6106 6.646240 GGTAACAAAGAAATGGTCACGTACTA 59.354 38.462 0.00 0.00 0.00 1.82
3641 6153 9.677567 ACGTTTACTAGTTTTTAGATGAACGTA 57.322 29.630 0.00 0.00 44.76 3.57
3650 6162 9.886132 AGTTTTTAGATGAACGTATACAAGGAT 57.114 29.630 3.32 0.00 0.00 3.24
3683 6195 8.726870 TTTGCATAAGGTGTAGTAAATACTCC 57.273 34.615 0.00 0.00 44.89 3.85
3684 6196 6.823497 TGCATAAGGTGTAGTAAATACTCCC 58.177 40.000 0.00 0.00 45.43 4.30
3685 6197 6.614087 TGCATAAGGTGTAGTAAATACTCCCT 59.386 38.462 0.00 0.00 45.43 4.20
3686 6198 7.153315 GCATAAGGTGTAGTAAATACTCCCTC 58.847 42.308 0.00 0.00 45.43 4.30
3687 6199 7.668492 CATAAGGTGTAGTAAATACTCCCTCC 58.332 42.308 0.00 0.90 45.43 4.30
3688 6200 4.213513 AGGTGTAGTAAATACTCCCTCCG 58.786 47.826 0.00 0.00 45.43 4.63
3689 6201 3.956848 GGTGTAGTAAATACTCCCTCCGT 59.043 47.826 0.00 0.00 40.65 4.69
3690 6202 5.103940 AGGTGTAGTAAATACTCCCTCCGTA 60.104 44.000 0.00 0.00 45.43 4.02
3691 6203 5.594317 GGTGTAGTAAATACTCCCTCCGTAA 59.406 44.000 0.00 0.00 40.65 3.18
3692 6204 6.096846 GGTGTAGTAAATACTCCCTCCGTAAA 59.903 42.308 0.00 0.00 40.65 2.01
3693 6205 7.199078 GTGTAGTAAATACTCCCTCCGTAAAG 58.801 42.308 0.00 0.00 37.73 1.85
3694 6206 7.067494 GTGTAGTAAATACTCCCTCCGTAAAGA 59.933 40.741 0.00 0.00 37.73 2.52
3695 6207 7.615365 TGTAGTAAATACTCCCTCCGTAAAGAA 59.385 37.037 0.00 0.00 37.73 2.52
3696 6208 7.486407 AGTAAATACTCCCTCCGTAAAGAAA 57.514 36.000 0.00 0.00 0.00 2.52
3697 6209 8.087303 AGTAAATACTCCCTCCGTAAAGAAAT 57.913 34.615 0.00 0.00 0.00 2.17
3698 6210 9.205513 AGTAAATACTCCCTCCGTAAAGAAATA 57.794 33.333 0.00 0.00 0.00 1.40
3699 6211 9.993454 GTAAATACTCCCTCCGTAAAGAAATAT 57.007 33.333 0.00 0.00 0.00 1.28
3703 6215 7.672122 ACTCCCTCCGTAAAGAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
3704 6216 8.773033 ACTCCCTCCGTAAAGAAATATAAGTA 57.227 34.615 0.00 0.00 0.00 2.24
3705 6217 9.377238 ACTCCCTCCGTAAAGAAATATAAGTAT 57.623 33.333 0.00 0.00 0.00 2.12
3706 6218 9.640963 CTCCCTCCGTAAAGAAATATAAGTATG 57.359 37.037 0.00 0.00 0.00 2.39
3865 6386 2.241941 TGCTTCCAAGGCCTATGAATGA 59.758 45.455 5.16 0.00 0.00 2.57
3870 6391 6.708885 TTCCAAGGCCTATGAATGATATCT 57.291 37.500 5.16 0.00 0.00 1.98
3873 6394 6.446110 TCCAAGGCCTATGAATGATATCTCAT 59.554 38.462 5.16 11.12 44.14 2.90
3970 6491 5.621193 ACTTAGGTGCACAAATGTACTTCT 58.379 37.500 20.43 4.67 40.94 2.85
4120 6650 7.221450 TCATGTCATTTCAGCATCTATCATGA 58.779 34.615 0.00 0.00 36.63 3.07
4271 6801 6.566197 ATTCCATGAGAATTAGATTTCGGC 57.434 37.500 0.00 0.00 42.86 5.54
4272 6802 5.296151 TCCATGAGAATTAGATTTCGGCT 57.704 39.130 0.00 0.00 0.00 5.52
4273 6803 5.059161 TCCATGAGAATTAGATTTCGGCTG 58.941 41.667 0.00 0.00 0.00 4.85
4274 6804 4.818546 CCATGAGAATTAGATTTCGGCTGT 59.181 41.667 0.00 0.00 0.00 4.40
4275 6805 5.991606 CCATGAGAATTAGATTTCGGCTGTA 59.008 40.000 0.00 0.00 0.00 2.74
4276 6806 6.652481 CCATGAGAATTAGATTTCGGCTGTAT 59.348 38.462 0.00 0.00 0.00 2.29
4277 6807 7.819415 CCATGAGAATTAGATTTCGGCTGTATA 59.181 37.037 0.00 0.00 0.00 1.47
4278 6808 9.376075 CATGAGAATTAGATTTCGGCTGTATAT 57.624 33.333 0.00 0.00 0.00 0.86
4279 6809 8.763049 TGAGAATTAGATTTCGGCTGTATATG 57.237 34.615 0.00 0.00 0.00 1.78
4280 6810 8.367911 TGAGAATTAGATTTCGGCTGTATATGT 58.632 33.333 0.00 0.00 0.00 2.29
4281 6811 9.209175 GAGAATTAGATTTCGGCTGTATATGTT 57.791 33.333 0.00 0.00 0.00 2.71
4282 6812 8.993121 AGAATTAGATTTCGGCTGTATATGTTG 58.007 33.333 0.00 0.00 0.00 3.33
4283 6813 8.677148 AATTAGATTTCGGCTGTATATGTTGT 57.323 30.769 0.00 0.00 0.00 3.32
4284 6814 5.991328 AGATTTCGGCTGTATATGTTGTG 57.009 39.130 0.00 0.00 0.00 3.33
4285 6815 5.428253 AGATTTCGGCTGTATATGTTGTGT 58.572 37.500 0.00 0.00 0.00 3.72
4286 6816 5.880332 AGATTTCGGCTGTATATGTTGTGTT 59.120 36.000 0.00 0.00 0.00 3.32
4287 6817 5.950758 TTTCGGCTGTATATGTTGTGTTT 57.049 34.783 0.00 0.00 0.00 2.83
4288 6818 7.551262 AGATTTCGGCTGTATATGTTGTGTTTA 59.449 33.333 0.00 0.00 0.00 2.01
4289 6819 7.436430 TTTCGGCTGTATATGTTGTGTTTAA 57.564 32.000 0.00 0.00 0.00 1.52
4290 6820 7.436430 TTCGGCTGTATATGTTGTGTTTAAA 57.564 32.000 0.00 0.00 0.00 1.52
4291 6821 6.833839 TCGGCTGTATATGTTGTGTTTAAAC 58.166 36.000 11.54 11.54 0.00 2.01
4292 6822 6.025280 CGGCTGTATATGTTGTGTTTAAACC 58.975 40.000 15.59 7.72 0.00 3.27
4293 6823 6.128117 CGGCTGTATATGTTGTGTTTAAACCT 60.128 38.462 15.59 0.00 0.00 3.50
4294 6824 7.064847 CGGCTGTATATGTTGTGTTTAAACCTA 59.935 37.037 15.59 1.91 0.00 3.08
4295 6825 8.899771 GGCTGTATATGTTGTGTTTAAACCTAT 58.100 33.333 15.59 5.72 0.00 2.57
4296 6826 9.716507 GCTGTATATGTTGTGTTTAAACCTATG 57.283 33.333 15.59 0.00 0.00 2.23
4302 6832 7.499321 TGTTGTGTTTAAACCTATGATTCGT 57.501 32.000 15.59 0.00 0.00 3.85
4303 6833 7.932335 TGTTGTGTTTAAACCTATGATTCGTT 58.068 30.769 15.59 0.00 0.00 3.85
4304 6834 8.071368 TGTTGTGTTTAAACCTATGATTCGTTC 58.929 33.333 15.59 0.00 0.00 3.95
4305 6835 7.731882 TGTGTTTAAACCTATGATTCGTTCA 57.268 32.000 15.59 0.00 39.12 3.18
4306 6836 8.330466 TGTGTTTAAACCTATGATTCGTTCAT 57.670 30.769 15.59 8.31 46.86 2.57
4307 6837 8.447833 TGTGTTTAAACCTATGATTCGTTCATC 58.552 33.333 15.59 0.00 44.13 2.92
4308 6838 7.908601 GTGTTTAAACCTATGATTCGTTCATCC 59.091 37.037 15.59 0.00 44.13 3.51
4309 6839 7.066525 TGTTTAAACCTATGATTCGTTCATCCC 59.933 37.037 15.59 0.00 44.13 3.85
4310 6840 3.771577 ACCTATGATTCGTTCATCCCC 57.228 47.619 6.84 0.00 44.13 4.81
4311 6841 3.318313 ACCTATGATTCGTTCATCCCCT 58.682 45.455 6.84 0.00 44.13 4.79
4312 6842 4.489737 ACCTATGATTCGTTCATCCCCTA 58.510 43.478 6.84 0.00 44.13 3.53
4313 6843 5.094387 ACCTATGATTCGTTCATCCCCTAT 58.906 41.667 6.84 0.00 44.13 2.57
4314 6844 5.548056 ACCTATGATTCGTTCATCCCCTATT 59.452 40.000 6.84 0.00 44.13 1.73
4315 6845 6.044404 ACCTATGATTCGTTCATCCCCTATTT 59.956 38.462 6.84 0.00 44.13 1.40
4316 6846 6.372659 CCTATGATTCGTTCATCCCCTATTTG 59.627 42.308 6.84 0.00 44.13 2.32
4317 6847 3.882888 TGATTCGTTCATCCCCTATTTGC 59.117 43.478 0.00 0.00 0.00 3.68
4318 6848 3.358111 TTCGTTCATCCCCTATTTGCA 57.642 42.857 0.00 0.00 0.00 4.08
4319 6849 2.639065 TCGTTCATCCCCTATTTGCAC 58.361 47.619 0.00 0.00 0.00 4.57
4320 6850 1.330521 CGTTCATCCCCTATTTGCACG 59.669 52.381 0.00 0.00 0.00 5.34
4321 6851 2.365582 GTTCATCCCCTATTTGCACGT 58.634 47.619 0.00 0.00 0.00 4.49
4322 6852 2.752903 GTTCATCCCCTATTTGCACGTT 59.247 45.455 0.00 0.00 0.00 3.99
4323 6853 2.639065 TCATCCCCTATTTGCACGTTC 58.361 47.619 0.00 0.00 0.00 3.95
4324 6854 2.026729 TCATCCCCTATTTGCACGTTCA 60.027 45.455 0.00 0.00 0.00 3.18
4325 6855 2.799126 TCCCCTATTTGCACGTTCAT 57.201 45.000 0.00 0.00 0.00 2.57
4326 6856 3.916359 TCCCCTATTTGCACGTTCATA 57.084 42.857 0.00 0.00 0.00 2.15
4327 6857 4.431416 TCCCCTATTTGCACGTTCATAT 57.569 40.909 0.00 0.00 0.00 1.78
4328 6858 4.133820 TCCCCTATTTGCACGTTCATATG 58.866 43.478 1.75 0.00 0.00 1.78
4329 6859 3.304659 CCCCTATTTGCACGTTCATATGC 60.305 47.826 0.00 0.00 42.40 3.14
4330 6860 3.565482 CCCTATTTGCACGTTCATATGCT 59.435 43.478 0.00 0.00 42.55 3.79
4331 6861 4.754618 CCCTATTTGCACGTTCATATGCTA 59.245 41.667 0.00 0.00 42.55 3.49
4332 6862 5.106948 CCCTATTTGCACGTTCATATGCTAG 60.107 44.000 0.00 0.00 42.55 3.42
4333 6863 3.673746 TTTGCACGTTCATATGCTAGC 57.326 42.857 8.10 8.10 42.55 3.42
4334 6864 1.581934 TGCACGTTCATATGCTAGCC 58.418 50.000 13.29 0.00 42.55 3.93
4335 6865 1.134551 TGCACGTTCATATGCTAGCCA 60.135 47.619 13.29 0.00 42.55 4.75
4336 6866 2.146342 GCACGTTCATATGCTAGCCAT 58.854 47.619 13.29 8.48 38.84 4.40
4337 6867 3.244044 TGCACGTTCATATGCTAGCCATA 60.244 43.478 13.29 10.43 42.55 2.74
4338 6868 3.935203 GCACGTTCATATGCTAGCCATAT 59.065 43.478 13.29 12.20 45.75 1.78
4339 6869 5.109210 GCACGTTCATATGCTAGCCATATA 58.891 41.667 13.29 3.87 43.59 0.86
4340 6870 5.755375 GCACGTTCATATGCTAGCCATATAT 59.245 40.000 13.29 6.25 43.59 0.86
4341 6871 6.923508 GCACGTTCATATGCTAGCCATATATA 59.076 38.462 13.29 3.07 43.59 0.86
4342 6872 7.438160 GCACGTTCATATGCTAGCCATATATAA 59.562 37.037 13.29 9.97 43.59 0.98
4343 6873 9.481340 CACGTTCATATGCTAGCCATATATAAT 57.519 33.333 13.29 0.00 43.59 1.28
4344 6874 9.481340 ACGTTCATATGCTAGCCATATATAATG 57.519 33.333 13.29 16.72 43.59 1.90
4345 6875 9.481340 CGTTCATATGCTAGCCATATATAATGT 57.519 33.333 13.29 0.00 43.59 2.71
4374 6904 5.101648 AGATAGTCGGTATCTAGGGCTAC 57.898 47.826 6.47 0.00 45.31 3.58
4375 6905 2.181954 AGTCGGTATCTAGGGCTACG 57.818 55.000 0.00 0.00 0.00 3.51
4376 6906 0.520847 GTCGGTATCTAGGGCTACGC 59.479 60.000 0.00 0.00 0.00 4.42
4377 6907 0.109153 TCGGTATCTAGGGCTACGCA 59.891 55.000 0.00 0.00 0.00 5.24
4378 6908 1.174783 CGGTATCTAGGGCTACGCAT 58.825 55.000 0.00 0.00 0.00 4.73
4379 6909 1.135373 CGGTATCTAGGGCTACGCATG 60.135 57.143 0.00 0.00 0.00 4.06
4380 6910 1.204941 GGTATCTAGGGCTACGCATGG 59.795 57.143 0.00 0.00 0.00 3.66
4381 6911 2.168496 GTATCTAGGGCTACGCATGGA 58.832 52.381 0.00 0.00 0.00 3.41
4382 6912 1.261480 ATCTAGGGCTACGCATGGAG 58.739 55.000 0.00 0.00 0.00 3.86
4383 6913 0.827925 TCTAGGGCTACGCATGGAGG 60.828 60.000 0.00 0.00 0.00 4.30
4384 6914 2.441822 CTAGGGCTACGCATGGAGGC 62.442 65.000 0.00 0.00 37.52 4.70
4392 6922 2.423446 GCATGGAGGCGGTAGGAG 59.577 66.667 0.00 0.00 0.00 3.69
4393 6923 2.134287 GCATGGAGGCGGTAGGAGA 61.134 63.158 0.00 0.00 0.00 3.71
4394 6924 1.476007 GCATGGAGGCGGTAGGAGAT 61.476 60.000 0.00 0.00 0.00 2.75
4395 6925 0.319728 CATGGAGGCGGTAGGAGATG 59.680 60.000 0.00 0.00 0.00 2.90
4396 6926 0.105453 ATGGAGGCGGTAGGAGATGT 60.105 55.000 0.00 0.00 0.00 3.06
4397 6927 0.755698 TGGAGGCGGTAGGAGATGTC 60.756 60.000 0.00 0.00 0.00 3.06
4398 6928 0.468400 GGAGGCGGTAGGAGATGTCT 60.468 60.000 0.00 0.00 0.00 3.41
4399 6929 1.404843 GAGGCGGTAGGAGATGTCTT 58.595 55.000 0.00 0.00 0.00 3.01
4400 6930 1.067821 GAGGCGGTAGGAGATGTCTTG 59.932 57.143 0.00 0.00 0.00 3.02
4401 6931 0.105039 GGCGGTAGGAGATGTCTTGG 59.895 60.000 0.00 0.00 0.00 3.61
4402 6932 1.112113 GCGGTAGGAGATGTCTTGGA 58.888 55.000 0.00 0.00 0.00 3.53
4403 6933 1.067821 GCGGTAGGAGATGTCTTGGAG 59.932 57.143 0.00 0.00 0.00 3.86
4404 6934 2.379972 CGGTAGGAGATGTCTTGGAGT 58.620 52.381 0.00 0.00 0.00 3.85
4405 6935 3.552875 CGGTAGGAGATGTCTTGGAGTA 58.447 50.000 0.00 0.00 0.00 2.59
4406 6936 4.145807 CGGTAGGAGATGTCTTGGAGTAT 58.854 47.826 0.00 0.00 0.00 2.12
4407 6937 5.314529 CGGTAGGAGATGTCTTGGAGTATA 58.685 45.833 0.00 0.00 0.00 1.47
4408 6938 5.181622 CGGTAGGAGATGTCTTGGAGTATAC 59.818 48.000 0.00 0.00 0.00 1.47
4409 6939 5.181622 GGTAGGAGATGTCTTGGAGTATACG 59.818 48.000 0.00 0.00 0.00 3.06
4410 6940 4.794334 AGGAGATGTCTTGGAGTATACGT 58.206 43.478 0.00 0.00 0.00 3.57
4411 6941 4.822896 AGGAGATGTCTTGGAGTATACGTC 59.177 45.833 0.00 0.00 0.00 4.34
4412 6942 4.579340 GGAGATGTCTTGGAGTATACGTCA 59.421 45.833 0.00 0.00 31.64 4.35
4413 6943 5.067413 GGAGATGTCTTGGAGTATACGTCAA 59.933 44.000 0.00 11.50 31.64 3.18
4414 6944 6.405508 GGAGATGTCTTGGAGTATACGTCAAA 60.406 42.308 12.58 4.53 31.64 2.69
4415 6945 7.113658 AGATGTCTTGGAGTATACGTCAAAT 57.886 36.000 12.58 6.20 31.64 2.32
4416 6946 7.203910 AGATGTCTTGGAGTATACGTCAAATC 58.796 38.462 12.58 12.18 31.64 2.17
4417 6947 6.525578 TGTCTTGGAGTATACGTCAAATCT 57.474 37.500 12.58 0.00 0.00 2.40
4418 6948 6.931838 TGTCTTGGAGTATACGTCAAATCTT 58.068 36.000 12.58 0.00 0.00 2.40
4419 6949 7.033791 TGTCTTGGAGTATACGTCAAATCTTC 58.966 38.462 12.58 0.00 0.00 2.87
4420 6950 6.196724 GTCTTGGAGTATACGTCAAATCTTCG 59.803 42.308 12.58 0.00 0.00 3.79
4421 6951 4.928601 TGGAGTATACGTCAAATCTTCGG 58.071 43.478 0.00 0.00 0.00 4.30
4422 6952 3.734735 GGAGTATACGTCAAATCTTCGGC 59.265 47.826 0.00 0.00 0.00 5.54
4423 6953 4.357142 GAGTATACGTCAAATCTTCGGCA 58.643 43.478 0.00 0.00 0.00 5.69
4424 6954 4.751060 AGTATACGTCAAATCTTCGGCAA 58.249 39.130 0.00 0.00 0.00 4.52
4425 6955 5.172934 AGTATACGTCAAATCTTCGGCAAA 58.827 37.500 0.00 0.00 0.00 3.68
4426 6956 2.681152 ACGTCAAATCTTCGGCAAAC 57.319 45.000 0.00 0.00 0.00 2.93
4427 6957 1.944024 ACGTCAAATCTTCGGCAAACA 59.056 42.857 0.00 0.00 0.00 2.83
4428 6958 2.552315 ACGTCAAATCTTCGGCAAACAT 59.448 40.909 0.00 0.00 0.00 2.71
4429 6959 2.910482 CGTCAAATCTTCGGCAAACATG 59.090 45.455 0.00 0.00 0.00 3.21
4430 6960 3.244976 GTCAAATCTTCGGCAAACATGG 58.755 45.455 0.00 0.00 0.00 3.66
4431 6961 2.890311 TCAAATCTTCGGCAAACATGGT 59.110 40.909 0.00 0.00 0.00 3.55
4432 6962 3.057596 TCAAATCTTCGGCAAACATGGTC 60.058 43.478 0.00 0.00 0.00 4.02
4433 6963 2.496899 ATCTTCGGCAAACATGGTCT 57.503 45.000 0.00 0.00 0.00 3.85
4434 6964 2.270352 TCTTCGGCAAACATGGTCTT 57.730 45.000 0.00 0.00 0.00 3.01
4435 6965 1.879380 TCTTCGGCAAACATGGTCTTG 59.121 47.619 0.00 0.00 0.00 3.02
4436 6966 1.879380 CTTCGGCAAACATGGTCTTGA 59.121 47.619 0.00 0.00 0.00 3.02
4437 6967 2.198827 TCGGCAAACATGGTCTTGAT 57.801 45.000 0.00 0.00 0.00 2.57
4438 6968 2.083774 TCGGCAAACATGGTCTTGATC 58.916 47.619 0.00 0.00 0.00 2.92
4439 6969 1.811965 CGGCAAACATGGTCTTGATCA 59.188 47.619 0.00 0.00 0.00 2.92
4440 6970 2.424601 CGGCAAACATGGTCTTGATCAT 59.575 45.455 0.00 0.00 0.00 2.45
4441 6971 3.488047 CGGCAAACATGGTCTTGATCATC 60.488 47.826 0.00 0.00 0.00 2.92
4442 6972 3.181483 GGCAAACATGGTCTTGATCATCC 60.181 47.826 0.00 0.57 0.00 3.51
4443 6973 3.181483 GCAAACATGGTCTTGATCATCCC 60.181 47.826 0.00 0.00 0.00 3.85
4444 6974 4.275810 CAAACATGGTCTTGATCATCCCT 58.724 43.478 0.00 0.00 0.00 4.20
4445 6975 5.439721 CAAACATGGTCTTGATCATCCCTA 58.560 41.667 0.00 0.00 0.00 3.53
4446 6976 4.970860 ACATGGTCTTGATCATCCCTAG 57.029 45.455 0.00 0.00 0.00 3.02
4447 6977 4.560739 ACATGGTCTTGATCATCCCTAGA 58.439 43.478 0.00 0.00 0.00 2.43
4448 6978 4.346418 ACATGGTCTTGATCATCCCTAGAC 59.654 45.833 13.78 13.78 36.26 2.59
4449 6979 3.994317 TGGTCTTGATCATCCCTAGACA 58.006 45.455 20.63 8.72 37.86 3.41
4450 6980 4.560739 TGGTCTTGATCATCCCTAGACAT 58.439 43.478 20.63 0.00 37.86 3.06
4451 6981 4.346127 TGGTCTTGATCATCCCTAGACATG 59.654 45.833 20.63 0.00 37.86 3.21
4452 6982 4.346418 GGTCTTGATCATCCCTAGACATGT 59.654 45.833 20.63 0.00 37.86 3.21
4453 6983 5.540337 GGTCTTGATCATCCCTAGACATGTA 59.460 44.000 20.63 0.00 37.86 2.29
4454 6984 6.295011 GGTCTTGATCATCCCTAGACATGTAG 60.295 46.154 20.63 0.00 37.86 2.74
4455 6985 5.244851 TCTTGATCATCCCTAGACATGTAGC 59.755 44.000 0.00 0.00 0.00 3.58
4456 6986 4.745351 TGATCATCCCTAGACATGTAGCT 58.255 43.478 0.00 0.00 0.00 3.32
4457 6987 5.150715 TGATCATCCCTAGACATGTAGCTT 58.849 41.667 0.00 0.00 0.00 3.74
4458 6988 5.244851 TGATCATCCCTAGACATGTAGCTTC 59.755 44.000 0.00 0.00 0.00 3.86
4459 6989 4.809193 TCATCCCTAGACATGTAGCTTCT 58.191 43.478 0.00 0.00 0.00 2.85
4460 6990 4.586421 TCATCCCTAGACATGTAGCTTCTG 59.414 45.833 0.00 0.00 0.00 3.02
4461 6991 3.300388 TCCCTAGACATGTAGCTTCTGG 58.700 50.000 0.00 0.00 0.00 3.86
4462 6992 3.052869 TCCCTAGACATGTAGCTTCTGGA 60.053 47.826 0.00 0.00 0.00 3.86
4463 6993 3.320541 CCCTAGACATGTAGCTTCTGGAG 59.679 52.174 0.00 0.00 0.00 3.86
4464 6994 3.957497 CCTAGACATGTAGCTTCTGGAGT 59.043 47.826 0.00 0.00 0.00 3.85
4465 6995 4.037446 CCTAGACATGTAGCTTCTGGAGTC 59.963 50.000 0.00 0.00 0.00 3.36
4466 6996 3.707316 AGACATGTAGCTTCTGGAGTCT 58.293 45.455 0.00 0.00 0.00 3.24
4467 6997 4.093011 AGACATGTAGCTTCTGGAGTCTT 58.907 43.478 0.00 0.00 31.61 3.01
4468 6998 4.081752 AGACATGTAGCTTCTGGAGTCTTG 60.082 45.833 0.00 0.00 31.61 3.02
4469 6999 3.834813 ACATGTAGCTTCTGGAGTCTTGA 59.165 43.478 0.00 0.00 0.00 3.02
4470 7000 3.944055 TGTAGCTTCTGGAGTCTTGAC 57.056 47.619 0.00 0.00 0.00 3.18
4471 7001 3.230976 TGTAGCTTCTGGAGTCTTGACA 58.769 45.455 0.00 0.00 0.00 3.58
4472 7002 3.834813 TGTAGCTTCTGGAGTCTTGACAT 59.165 43.478 0.00 0.00 0.00 3.06
4473 7003 3.331478 AGCTTCTGGAGTCTTGACATG 57.669 47.619 3.49 0.00 0.00 3.21
4474 7004 2.636893 AGCTTCTGGAGTCTTGACATGT 59.363 45.455 0.00 0.00 0.00 3.21
4475 7005 2.999355 GCTTCTGGAGTCTTGACATGTC 59.001 50.000 19.27 19.27 0.00 3.06
4476 7006 3.306641 GCTTCTGGAGTCTTGACATGTCT 60.307 47.826 25.55 5.81 0.00 3.41
4477 7007 4.802248 GCTTCTGGAGTCTTGACATGTCTT 60.802 45.833 25.55 7.17 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 124 1.865865 GCCGGTGTCATCGTCATTAT 58.134 50.000 1.90 0.00 0.00 1.28
124 126 1.809619 CGCCGGTGTCATCGTCATT 60.810 57.895 6.91 0.00 0.00 2.57
258 276 2.017049 GATCACGGCCATAAAACAGCT 58.983 47.619 2.24 0.00 0.00 4.24
261 279 1.283613 AGGGATCACGGCCATAAAACA 59.716 47.619 2.24 0.00 0.00 2.83
355 384 0.674269 GTTCGGGTGGGCGTGATAAA 60.674 55.000 0.00 0.00 0.00 1.40
356 385 1.078988 GTTCGGGTGGGCGTGATAA 60.079 57.895 0.00 0.00 0.00 1.75
358 387 2.966732 ATGTTCGGGTGGGCGTGAT 61.967 57.895 0.00 0.00 0.00 3.06
359 388 3.632080 ATGTTCGGGTGGGCGTGA 61.632 61.111 0.00 0.00 0.00 4.35
362 391 1.312371 AAATCATGTTCGGGTGGGCG 61.312 55.000 0.00 0.00 0.00 6.13
363 392 0.173255 CAAATCATGTTCGGGTGGGC 59.827 55.000 0.00 0.00 0.00 5.36
366 395 1.832883 TCCCAAATCATGTTCGGGTG 58.167 50.000 9.84 0.00 38.15 4.61
405 434 5.335426 GCGTCTATCCGTTGGATCATAAGTA 60.335 44.000 0.71 0.00 42.11 2.24
408 437 3.610821 CGCGTCTATCCGTTGGATCATAA 60.611 47.826 0.71 0.00 42.11 1.90
409 438 2.095415 CGCGTCTATCCGTTGGATCATA 60.095 50.000 0.71 0.00 42.11 2.15
411 440 0.030235 CGCGTCTATCCGTTGGATCA 59.970 55.000 0.71 0.00 42.11 2.92
423 452 4.201679 CGCCCATGTCCGCGTCTA 62.202 66.667 4.92 0.00 43.35 2.59
446 475 1.459450 TATTCCTTTGGAGCGGCAAC 58.541 50.000 1.45 0.00 31.21 4.17
454 483 3.028130 GGCCGGATTTTATTCCTTTGGA 58.972 45.455 5.05 0.00 33.30 3.53
495 524 2.029073 CAACTCCACCGCACGACT 59.971 61.111 0.00 0.00 0.00 4.18
534 563 0.503117 GTTTGTCTCACGCGTGTCTC 59.497 55.000 35.74 25.34 0.00 3.36
538 567 0.381428 GTTCGTTTGTCTCACGCGTG 60.381 55.000 32.76 32.76 37.57 5.34
591 620 1.893808 CGCGGGAGGAAATGATGGG 60.894 63.158 0.00 0.00 0.00 4.00
621 650 0.657312 TCATGACCGATCAATTGCGC 59.343 50.000 0.00 0.00 38.69 6.09
634 663 0.802607 GGGCGACGAACTCTCATGAC 60.803 60.000 0.00 0.00 0.00 3.06
653 689 3.777925 CAAAGACGCGCACGAGGG 61.778 66.667 5.73 0.00 43.93 4.30
668 704 2.872557 CCGCTCGGTACTCGACAA 59.127 61.111 0.00 0.00 43.74 3.18
688 724 3.492102 TGCCTACTTTGTTGAAGCTCT 57.508 42.857 0.00 0.00 39.04 4.09
736 805 2.808543 GACTGAAAAAGACTGATGCGGT 59.191 45.455 0.00 0.00 0.00 5.68
768 837 7.467344 ACCGTCAAAGGAAAAGGAATAGTTCC 61.467 42.308 0.41 0.41 41.56 3.62
781 850 2.043992 TCTCTCCAACCGTCAAAGGAA 58.956 47.619 0.00 0.00 34.73 3.36
782 851 1.712056 TCTCTCCAACCGTCAAAGGA 58.288 50.000 0.00 0.00 34.73 3.36
783 852 2.143925 GTTCTCTCCAACCGTCAAAGG 58.856 52.381 0.00 0.00 37.30 3.11
784 853 1.792949 CGTTCTCTCCAACCGTCAAAG 59.207 52.381 0.00 0.00 0.00 2.77
785 854 1.137479 ACGTTCTCTCCAACCGTCAAA 59.863 47.619 0.00 0.00 0.00 2.69
786 855 0.748450 ACGTTCTCTCCAACCGTCAA 59.252 50.000 0.00 0.00 0.00 3.18
787 856 0.031585 CACGTTCTCTCCAACCGTCA 59.968 55.000 0.00 0.00 0.00 4.35
886 955 7.048629 TGCAAGTTTCAACAAGGAAATATCA 57.951 32.000 0.00 0.00 38.86 2.15
1134 1203 1.141234 GCCCGTGTAGAGGTAGCAC 59.859 63.158 0.00 0.00 0.00 4.40
1341 1410 1.801983 GGACGAGTCGGAGAAGTCC 59.198 63.158 18.30 9.62 45.32 3.85
1808 1877 3.651480 GAATCCACGCACACGCTGC 62.651 63.158 0.00 0.00 45.53 5.25
1830 1899 1.186267 AGAGATATCCCGGGCCGTTC 61.186 60.000 26.32 10.05 0.00 3.95
1922 1991 7.502895 GCAATATCGAGTAGGATAGGAATAGGA 59.497 40.741 0.00 0.00 32.74 2.94
1940 2009 0.032678 AGCAGACCTCGGCAATATCG 59.967 55.000 0.21 0.00 39.54 2.92
1943 2012 4.149598 TCTTATAGCAGACCTCGGCAATA 58.850 43.478 0.21 0.00 39.54 1.90
1946 2015 2.067365 TCTTATAGCAGACCTCGGCA 57.933 50.000 0.21 0.00 39.54 5.69
1947 2016 3.454371 TTTCTTATAGCAGACCTCGGC 57.546 47.619 0.00 0.00 37.32 5.54
1948 2017 5.601662 TGAATTTCTTATAGCAGACCTCGG 58.398 41.667 0.00 0.00 0.00 4.63
1950 2019 8.900983 AATCTGAATTTCTTATAGCAGACCTC 57.099 34.615 0.00 0.00 35.49 3.85
1951 2020 9.118300 CAAATCTGAATTTCTTATAGCAGACCT 57.882 33.333 0.00 0.00 35.49 3.85
1952 2021 8.348507 CCAAATCTGAATTTCTTATAGCAGACC 58.651 37.037 0.00 0.00 35.49 3.85
1953 2022 8.897752 ACCAAATCTGAATTTCTTATAGCAGAC 58.102 33.333 0.00 0.00 35.49 3.51
1954 2023 9.466497 AACCAAATCTGAATTTCTTATAGCAGA 57.534 29.630 0.00 0.00 36.88 4.26
1970 2056 5.064962 TCTGCAAAAGCAAAAACCAAATCTG 59.935 36.000 0.00 0.00 0.00 2.90
1971 2057 5.184711 TCTGCAAAAGCAAAAACCAAATCT 58.815 33.333 0.00 0.00 0.00 2.40
1972 2058 5.482686 TCTGCAAAAGCAAAAACCAAATC 57.517 34.783 0.00 0.00 0.00 2.17
1973 2059 7.748691 ATATCTGCAAAAGCAAAAACCAAAT 57.251 28.000 0.00 0.00 0.00 2.32
1974 2060 7.281774 TCAATATCTGCAAAAGCAAAAACCAAA 59.718 29.630 0.00 0.00 0.00 3.28
1975 2061 6.765036 TCAATATCTGCAAAAGCAAAAACCAA 59.235 30.769 0.00 0.00 0.00 3.67
1976 2062 6.202570 GTCAATATCTGCAAAAGCAAAAACCA 59.797 34.615 0.00 0.00 0.00 3.67
1977 2063 6.593072 GTCAATATCTGCAAAAGCAAAAACC 58.407 36.000 0.00 0.00 0.00 3.27
1978 2064 6.143758 TCGTCAATATCTGCAAAAGCAAAAAC 59.856 34.615 0.00 0.00 0.00 2.43
1979 2065 6.212235 TCGTCAATATCTGCAAAAGCAAAAA 58.788 32.000 0.00 0.00 0.00 1.94
1980 2066 5.767269 TCGTCAATATCTGCAAAAGCAAAA 58.233 33.333 0.00 0.00 0.00 2.44
2039 2125 1.278985 TGTTGATGCAGGTACCAGGAG 59.721 52.381 15.94 1.86 0.00 3.69
2061 2147 2.911143 CACCTGAATCCTCCCGGG 59.089 66.667 16.85 16.85 0.00 5.73
2241 2367 7.119846 AGGTGTGCTAGAAATTAAGATTCACAC 59.880 37.037 11.77 11.77 41.03 3.82
2243 2369 7.617041 AGGTGTGCTAGAAATTAAGATTCAC 57.383 36.000 0.00 0.00 0.00 3.18
2365 3651 0.037326 TGCTGCTTGAAGTACCTCCG 60.037 55.000 0.00 0.00 0.00 4.63
2520 3812 4.660521 AGGGTGCCCTTGTAGACA 57.339 55.556 3.45 0.00 45.70 3.41
3222 5724 1.558756 AGGCACTGCTTTGCTATCTCT 59.441 47.619 9.55 0.00 42.56 3.10
3251 5753 2.757917 AGGGTCTCCTCTCGCTGC 60.758 66.667 0.00 0.00 39.80 5.25
3330 5835 1.524008 CGGAACTCTTTTGGCCCCAC 61.524 60.000 0.00 0.00 0.00 4.61
3356 5861 1.799258 AACAGCAAGCAAGGCTTCCG 61.799 55.000 0.00 0.00 46.77 4.30
3416 5921 3.566742 CAGGCTGACATATGCATTGCTAA 59.433 43.478 9.42 0.00 0.00 3.09
3426 5931 2.968574 AGAATCGTCCAGGCTGACATAT 59.031 45.455 17.94 6.17 34.88 1.78
3436 5941 2.389059 CAGATACGCAGAATCGTCCAG 58.611 52.381 0.00 0.00 43.15 3.86
3488 5993 4.760047 GGCTCGCCGGAAGCAAGA 62.760 66.667 25.09 5.95 44.04 3.02
3514 6021 3.009723 GCTCACAAAATTCGATCCAGGA 58.990 45.455 0.00 0.00 0.00 3.86
3515 6022 2.749076 TGCTCACAAAATTCGATCCAGG 59.251 45.455 0.00 0.00 0.00 4.45
3520 6027 3.242739 GCCGTATGCTCACAAAATTCGAT 60.243 43.478 0.00 0.00 36.87 3.59
3525 6032 1.745087 CTGGCCGTATGCTCACAAAAT 59.255 47.619 0.00 0.00 40.92 1.82
3534 6041 3.264897 CGACAGCTGGCCGTATGC 61.265 66.667 19.93 0.00 40.16 3.14
3540 6047 4.996434 AGCACACGACAGCTGGCC 62.996 66.667 19.93 8.50 40.13 5.36
3543 6050 2.250485 GCAAGCACACGACAGCTG 59.750 61.111 13.48 13.48 41.70 4.24
3545 6052 1.626654 ATACGCAAGCACACGACAGC 61.627 55.000 0.00 0.00 45.62 4.40
3576 6083 7.710044 TGTTAGTACGTGACCATTTCTTTGTTA 59.290 33.333 0.00 0.00 0.00 2.41
3578 6085 6.050432 TGTTAGTACGTGACCATTTCTTTGT 58.950 36.000 0.00 0.00 0.00 2.83
3579 6086 6.533819 TGTTAGTACGTGACCATTTCTTTG 57.466 37.500 0.00 0.00 0.00 2.77
3582 6089 6.032956 TCATGTTAGTACGTGACCATTTCT 57.967 37.500 0.00 0.00 43.58 2.52
3593 6100 5.079406 GTGCACAAACATCATGTTAGTACG 58.921 41.667 13.17 0.00 40.14 3.67
3599 6106 3.435105 AACGTGCACAAACATCATGTT 57.565 38.095 18.64 6.41 43.41 2.71
3670 6182 7.573968 TCTTTACGGAGGGAGTATTTACTAC 57.426 40.000 0.00 0.00 36.50 2.73
3677 6189 9.377238 ACTTATATTTCTTTACGGAGGGAGTAT 57.623 33.333 0.00 0.00 0.00 2.12
3678 6190 8.773033 ACTTATATTTCTTTACGGAGGGAGTA 57.227 34.615 0.00 0.00 0.00 2.59
3679 6191 7.672122 ACTTATATTTCTTTACGGAGGGAGT 57.328 36.000 0.00 0.00 0.00 3.85
3680 6192 9.640963 CATACTTATATTTCTTTACGGAGGGAG 57.359 37.037 0.00 0.00 0.00 4.30
3681 6193 9.151177 ACATACTTATATTTCTTTACGGAGGGA 57.849 33.333 0.00 0.00 0.00 4.20
3682 6194 9.774413 AACATACTTATATTTCTTTACGGAGGG 57.226 33.333 0.00 0.00 0.00 4.30
3704 6216 8.936864 GTGCATTGTTCTAGTCTTACTAAACAT 58.063 33.333 0.00 4.92 34.71 2.71
3705 6217 7.115805 CGTGCATTGTTCTAGTCTTACTAAACA 59.884 37.037 0.00 9.05 33.83 2.83
3706 6218 7.115947 ACGTGCATTGTTCTAGTCTTACTAAAC 59.884 37.037 0.00 0.00 29.00 2.01
3721 6234 2.051076 CAGCGCACGTGCATTGTT 60.051 55.556 37.03 18.35 42.21 2.83
3729 6242 1.581934 ATATGTATTGCAGCGCACGT 58.418 45.000 11.47 1.06 38.71 4.49
3790 6311 9.288576 CCACAATGTTAATACACATGAGGATAT 57.711 33.333 0.00 0.00 37.36 1.63
3793 6314 5.885352 CCCACAATGTTAATACACATGAGGA 59.115 40.000 0.00 0.00 37.36 3.71
3841 6362 1.915489 TCATAGGCCTTGGAAGCAGAA 59.085 47.619 12.58 0.00 0.00 3.02
3845 6366 2.936202 TCATTCATAGGCCTTGGAAGC 58.064 47.619 12.58 0.00 0.00 3.86
3865 6386 8.621126 AGATAGCCTTGGTATCAATGAGATAT 57.379 34.615 13.83 0.00 43.08 1.63
3870 6391 6.013379 CCCTAAGATAGCCTTGGTATCAATGA 60.013 42.308 13.83 0.00 43.08 2.57
3873 6394 4.597507 CCCCTAAGATAGCCTTGGTATCAA 59.402 45.833 13.83 0.00 43.08 2.57
3876 6397 4.503685 TCCCCTAAGATAGCCTTGGTAT 57.496 45.455 0.00 0.00 36.34 2.73
4059 6589 9.520515 AGTGACAAATATTTTTCATAGGTCTGT 57.479 29.630 17.60 1.18 30.57 3.41
4130 6660 4.094294 TGCATCCACGCTCTAAAATTACAC 59.906 41.667 0.00 0.00 0.00 2.90
4260 6790 7.045416 ACACAACATATACAGCCGAAATCTAA 58.955 34.615 0.00 0.00 0.00 2.10
4261 6791 6.578944 ACACAACATATACAGCCGAAATCTA 58.421 36.000 0.00 0.00 0.00 1.98
4262 6792 5.428253 ACACAACATATACAGCCGAAATCT 58.572 37.500 0.00 0.00 0.00 2.40
4263 6793 5.734855 ACACAACATATACAGCCGAAATC 57.265 39.130 0.00 0.00 0.00 2.17
4264 6794 6.509418 AAACACAACATATACAGCCGAAAT 57.491 33.333 0.00 0.00 0.00 2.17
4265 6795 5.950758 AAACACAACATATACAGCCGAAA 57.049 34.783 0.00 0.00 0.00 3.46
4266 6796 7.299586 GTTTAAACACAACATATACAGCCGAA 58.700 34.615 13.51 0.00 0.00 4.30
4267 6797 6.128227 GGTTTAAACACAACATATACAGCCGA 60.128 38.462 19.57 0.00 0.00 5.54
4268 6798 6.025280 GGTTTAAACACAACATATACAGCCG 58.975 40.000 19.57 0.00 0.00 5.52
4269 6799 7.153217 AGGTTTAAACACAACATATACAGCC 57.847 36.000 19.57 0.00 0.00 4.85
4270 6800 9.716507 CATAGGTTTAAACACAACATATACAGC 57.283 33.333 19.57 0.00 31.12 4.40
4276 6806 9.221933 ACGAATCATAGGTTTAAACACAACATA 57.778 29.630 19.57 0.00 0.00 2.29
4277 6807 8.106247 ACGAATCATAGGTTTAAACACAACAT 57.894 30.769 19.57 3.54 0.00 2.71
4278 6808 7.499321 ACGAATCATAGGTTTAAACACAACA 57.501 32.000 19.57 1.30 0.00 3.33
4279 6809 8.071368 TGAACGAATCATAGGTTTAAACACAAC 58.929 33.333 19.57 2.67 31.50 3.32
4280 6810 8.155821 TGAACGAATCATAGGTTTAAACACAA 57.844 30.769 19.57 4.99 31.50 3.33
4281 6811 7.731882 TGAACGAATCATAGGTTTAAACACA 57.268 32.000 19.57 7.08 31.50 3.72
4295 6825 3.882888 GCAAATAGGGGATGAACGAATCA 59.117 43.478 0.00 0.00 43.67 2.57
4296 6826 3.882888 TGCAAATAGGGGATGAACGAATC 59.117 43.478 0.00 0.00 0.00 2.52
4297 6827 3.632145 GTGCAAATAGGGGATGAACGAAT 59.368 43.478 0.00 0.00 0.00 3.34
4298 6828 3.013921 GTGCAAATAGGGGATGAACGAA 58.986 45.455 0.00 0.00 0.00 3.85
4299 6829 2.639065 GTGCAAATAGGGGATGAACGA 58.361 47.619 0.00 0.00 0.00 3.85
4300 6830 1.330521 CGTGCAAATAGGGGATGAACG 59.669 52.381 0.00 0.00 39.50 3.95
4301 6831 2.365582 ACGTGCAAATAGGGGATGAAC 58.634 47.619 0.00 0.00 0.00 3.18
4302 6832 2.799126 ACGTGCAAATAGGGGATGAA 57.201 45.000 0.00 0.00 0.00 2.57
4303 6833 2.026729 TGAACGTGCAAATAGGGGATGA 60.027 45.455 0.00 0.00 0.00 2.92
4304 6834 2.364632 TGAACGTGCAAATAGGGGATG 58.635 47.619 0.00 0.00 0.00 3.51
4305 6835 2.799126 TGAACGTGCAAATAGGGGAT 57.201 45.000 0.00 0.00 0.00 3.85
4306 6836 2.799126 ATGAACGTGCAAATAGGGGA 57.201 45.000 0.00 0.00 0.00 4.81
4307 6837 3.304659 GCATATGAACGTGCAAATAGGGG 60.305 47.826 6.97 0.00 40.94 4.79
4308 6838 3.565482 AGCATATGAACGTGCAAATAGGG 59.435 43.478 6.97 0.00 43.63 3.53
4309 6839 4.818534 AGCATATGAACGTGCAAATAGG 57.181 40.909 6.97 0.00 43.63 2.57
4310 6840 5.377358 GCTAGCATATGAACGTGCAAATAG 58.623 41.667 10.63 0.08 43.63 1.73
4311 6841 4.213270 GGCTAGCATATGAACGTGCAAATA 59.787 41.667 18.24 0.00 43.63 1.40
4312 6842 3.003689 GGCTAGCATATGAACGTGCAAAT 59.996 43.478 18.24 0.00 43.63 2.32
4313 6843 2.354510 GGCTAGCATATGAACGTGCAAA 59.645 45.455 18.24 0.00 43.63 3.68
4314 6844 1.939934 GGCTAGCATATGAACGTGCAA 59.060 47.619 18.24 0.00 43.63 4.08
4315 6845 1.134551 TGGCTAGCATATGAACGTGCA 60.135 47.619 18.24 0.00 43.63 4.57
4316 6846 1.581934 TGGCTAGCATATGAACGTGC 58.418 50.000 18.24 2.75 41.57 5.34
4317 6847 8.871686 TTATATATGGCTAGCATATGAACGTG 57.128 34.615 18.24 0.00 0.00 4.49
4318 6848 9.481340 CATTATATATGGCTAGCATATGAACGT 57.519 33.333 18.24 0.83 0.00 3.99
4319 6849 9.481340 ACATTATATATGGCTAGCATATGAACG 57.519 33.333 18.24 10.84 0.00 3.95
4343 6873 9.445878 CCTAGATACCGACTATCTATAAACACA 57.554 37.037 9.14 0.00 41.67 3.72
4344 6874 8.891720 CCCTAGATACCGACTATCTATAAACAC 58.108 40.741 9.14 0.00 41.67 3.32
4345 6875 7.555554 GCCCTAGATACCGACTATCTATAAACA 59.444 40.741 9.14 0.00 41.67 2.83
4346 6876 7.774625 AGCCCTAGATACCGACTATCTATAAAC 59.225 40.741 9.14 3.04 41.67 2.01
4347 6877 7.870027 AGCCCTAGATACCGACTATCTATAAA 58.130 38.462 9.14 0.00 41.67 1.40
4348 6878 7.448915 AGCCCTAGATACCGACTATCTATAA 57.551 40.000 9.14 0.00 41.67 0.98
4349 6879 7.255766 CGTAGCCCTAGATACCGACTATCTATA 60.256 44.444 9.14 0.29 41.67 1.31
4350 6880 5.979656 AGCCCTAGATACCGACTATCTAT 57.020 43.478 9.14 0.00 41.67 1.98
4351 6881 5.163468 CGTAGCCCTAGATACCGACTATCTA 60.163 48.000 0.00 8.63 41.69 1.98
4352 6882 4.382901 CGTAGCCCTAGATACCGACTATCT 60.383 50.000 0.00 7.50 43.58 1.98
4353 6883 3.870419 CGTAGCCCTAGATACCGACTATC 59.130 52.174 0.00 0.00 30.87 2.08
4354 6884 3.871485 CGTAGCCCTAGATACCGACTAT 58.129 50.000 0.00 0.00 30.87 2.12
4355 6885 3.325293 CGTAGCCCTAGATACCGACTA 57.675 52.381 0.00 0.00 30.87 2.59
4356 6886 2.181954 CGTAGCCCTAGATACCGACT 57.818 55.000 0.00 0.00 30.87 4.18
4375 6905 1.476007 ATCTCCTACCGCCTCCATGC 61.476 60.000 0.00 0.00 0.00 4.06
4376 6906 0.319728 CATCTCCTACCGCCTCCATG 59.680 60.000 0.00 0.00 0.00 3.66
4377 6907 0.105453 ACATCTCCTACCGCCTCCAT 60.105 55.000 0.00 0.00 0.00 3.41
4378 6908 0.755698 GACATCTCCTACCGCCTCCA 60.756 60.000 0.00 0.00 0.00 3.86
4379 6909 0.468400 AGACATCTCCTACCGCCTCC 60.468 60.000 0.00 0.00 0.00 4.30
4380 6910 1.067821 CAAGACATCTCCTACCGCCTC 59.932 57.143 0.00 0.00 0.00 4.70
4381 6911 1.115467 CAAGACATCTCCTACCGCCT 58.885 55.000 0.00 0.00 0.00 5.52
4382 6912 0.105039 CCAAGACATCTCCTACCGCC 59.895 60.000 0.00 0.00 0.00 6.13
4383 6913 1.067821 CTCCAAGACATCTCCTACCGC 59.932 57.143 0.00 0.00 0.00 5.68
4384 6914 2.379972 ACTCCAAGACATCTCCTACCG 58.620 52.381 0.00 0.00 0.00 4.02
4385 6915 5.181622 CGTATACTCCAAGACATCTCCTACC 59.818 48.000 0.56 0.00 0.00 3.18
4386 6916 5.764192 ACGTATACTCCAAGACATCTCCTAC 59.236 44.000 0.56 0.00 0.00 3.18
4387 6917 5.938279 ACGTATACTCCAAGACATCTCCTA 58.062 41.667 0.56 0.00 0.00 2.94
4388 6918 4.794334 ACGTATACTCCAAGACATCTCCT 58.206 43.478 0.56 0.00 0.00 3.69
4389 6919 4.579340 TGACGTATACTCCAAGACATCTCC 59.421 45.833 0.56 0.00 0.00 3.71
4390 6920 5.752892 TGACGTATACTCCAAGACATCTC 57.247 43.478 0.56 0.00 0.00 2.75
4391 6921 6.525578 TTTGACGTATACTCCAAGACATCT 57.474 37.500 0.56 0.00 0.00 2.90
4392 6922 7.203910 AGATTTGACGTATACTCCAAGACATC 58.796 38.462 0.56 5.57 0.00 3.06
4393 6923 7.113658 AGATTTGACGTATACTCCAAGACAT 57.886 36.000 0.56 0.00 0.00 3.06
4394 6924 6.525578 AGATTTGACGTATACTCCAAGACA 57.474 37.500 0.56 0.00 0.00 3.41
4395 6925 6.196724 CGAAGATTTGACGTATACTCCAAGAC 59.803 42.308 0.56 3.84 0.00 3.01
4396 6926 6.263344 CGAAGATTTGACGTATACTCCAAGA 58.737 40.000 0.56 0.00 0.00 3.02
4397 6927 5.459107 CCGAAGATTTGACGTATACTCCAAG 59.541 44.000 0.56 0.00 0.00 3.61
4398 6928 5.345702 CCGAAGATTTGACGTATACTCCAA 58.654 41.667 0.56 2.36 0.00 3.53
4399 6929 4.735578 GCCGAAGATTTGACGTATACTCCA 60.736 45.833 0.56 0.00 0.00 3.86
4400 6930 3.734735 GCCGAAGATTTGACGTATACTCC 59.265 47.826 0.56 0.00 0.00 3.85
4401 6931 4.357142 TGCCGAAGATTTGACGTATACTC 58.643 43.478 0.56 0.00 0.00 2.59
4402 6932 4.380841 TGCCGAAGATTTGACGTATACT 57.619 40.909 0.56 0.00 0.00 2.12
4403 6933 5.163933 TGTTTGCCGAAGATTTGACGTATAC 60.164 40.000 0.00 0.00 0.00 1.47
4404 6934 4.930405 TGTTTGCCGAAGATTTGACGTATA 59.070 37.500 0.00 0.00 0.00 1.47
4405 6935 3.749088 TGTTTGCCGAAGATTTGACGTAT 59.251 39.130 0.00 0.00 0.00 3.06
4406 6936 3.132160 TGTTTGCCGAAGATTTGACGTA 58.868 40.909 0.00 0.00 0.00 3.57
4407 6937 1.944024 TGTTTGCCGAAGATTTGACGT 59.056 42.857 0.00 0.00 0.00 4.34
4408 6938 2.679355 TGTTTGCCGAAGATTTGACG 57.321 45.000 0.00 0.00 0.00 4.35
4409 6939 3.244976 CCATGTTTGCCGAAGATTTGAC 58.755 45.455 0.00 0.00 0.00 3.18
4410 6940 2.890311 ACCATGTTTGCCGAAGATTTGA 59.110 40.909 0.00 0.00 0.00 2.69
4411 6941 3.057315 AGACCATGTTTGCCGAAGATTTG 60.057 43.478 0.00 0.00 0.00 2.32
4412 6942 3.157087 AGACCATGTTTGCCGAAGATTT 58.843 40.909 0.00 0.00 0.00 2.17
4413 6943 2.795329 AGACCATGTTTGCCGAAGATT 58.205 42.857 0.00 0.00 0.00 2.40
4414 6944 2.489329 CAAGACCATGTTTGCCGAAGAT 59.511 45.455 0.00 0.00 0.00 2.40
4415 6945 1.879380 CAAGACCATGTTTGCCGAAGA 59.121 47.619 0.00 0.00 0.00 2.87
4416 6946 1.879380 TCAAGACCATGTTTGCCGAAG 59.121 47.619 0.00 0.00 0.00 3.79
4417 6947 1.974265 TCAAGACCATGTTTGCCGAA 58.026 45.000 0.00 0.00 0.00 4.30
4418 6948 2.083774 GATCAAGACCATGTTTGCCGA 58.916 47.619 0.00 0.00 0.00 5.54
4419 6949 1.811965 TGATCAAGACCATGTTTGCCG 59.188 47.619 0.00 0.00 0.00 5.69
4420 6950 3.181483 GGATGATCAAGACCATGTTTGCC 60.181 47.826 0.00 0.00 0.00 4.52
4421 6951 3.181483 GGGATGATCAAGACCATGTTTGC 60.181 47.826 0.00 0.00 0.00 3.68
4422 6952 4.275810 AGGGATGATCAAGACCATGTTTG 58.724 43.478 13.95 0.00 0.00 2.93
4423 6953 4.598036 AGGGATGATCAAGACCATGTTT 57.402 40.909 13.95 0.00 0.00 2.83
4424 6954 4.971282 TCTAGGGATGATCAAGACCATGTT 59.029 41.667 13.95 0.00 0.00 2.71
4425 6955 4.346418 GTCTAGGGATGATCAAGACCATGT 59.654 45.833 11.81 3.39 32.27 3.21
4426 6956 4.346127 TGTCTAGGGATGATCAAGACCATG 59.654 45.833 17.71 9.48 36.56 3.66
4427 6957 4.560739 TGTCTAGGGATGATCAAGACCAT 58.439 43.478 17.71 13.20 36.56 3.55
4428 6958 3.994317 TGTCTAGGGATGATCAAGACCA 58.006 45.455 17.71 7.08 36.56 4.02
4429 6959 4.346418 ACATGTCTAGGGATGATCAAGACC 59.654 45.833 17.71 12.16 36.56 3.85
4430 6960 5.543507 ACATGTCTAGGGATGATCAAGAC 57.456 43.478 14.85 14.85 37.64 3.01
4431 6961 5.244851 GCTACATGTCTAGGGATGATCAAGA 59.755 44.000 0.00 0.00 0.00 3.02
4432 6962 5.245751 AGCTACATGTCTAGGGATGATCAAG 59.754 44.000 0.00 0.00 0.00 3.02
4433 6963 5.150715 AGCTACATGTCTAGGGATGATCAA 58.849 41.667 0.00 0.00 0.00 2.57
4434 6964 4.745351 AGCTACATGTCTAGGGATGATCA 58.255 43.478 0.00 0.00 0.00 2.92
4435 6965 5.480073 AGAAGCTACATGTCTAGGGATGATC 59.520 44.000 0.00 0.00 0.00 2.92
4436 6966 5.245751 CAGAAGCTACATGTCTAGGGATGAT 59.754 44.000 0.00 0.00 0.00 2.45
4437 6967 4.586421 CAGAAGCTACATGTCTAGGGATGA 59.414 45.833 0.00 0.00 0.00 2.92
4438 6968 4.262377 CCAGAAGCTACATGTCTAGGGATG 60.262 50.000 0.00 0.00 0.00 3.51
4439 6969 3.900601 CCAGAAGCTACATGTCTAGGGAT 59.099 47.826 0.00 0.00 0.00 3.85
4440 6970 3.052869 TCCAGAAGCTACATGTCTAGGGA 60.053 47.826 0.00 0.00 0.00 4.20
4441 6971 3.300388 TCCAGAAGCTACATGTCTAGGG 58.700 50.000 0.00 0.00 0.00 3.53
4442 6972 3.957497 ACTCCAGAAGCTACATGTCTAGG 59.043 47.826 0.00 0.00 0.00 3.02
4443 6973 4.887071 AGACTCCAGAAGCTACATGTCTAG 59.113 45.833 0.00 0.00 32.64 2.43
4444 6974 4.861196 AGACTCCAGAAGCTACATGTCTA 58.139 43.478 0.00 0.00 32.64 2.59
4445 6975 3.707316 AGACTCCAGAAGCTACATGTCT 58.293 45.455 0.00 0.00 0.00 3.41
4446 6976 4.081972 TCAAGACTCCAGAAGCTACATGTC 60.082 45.833 0.00 0.00 0.00 3.06
4447 6977 3.834813 TCAAGACTCCAGAAGCTACATGT 59.165 43.478 2.69 2.69 0.00 3.21
4448 6978 4.180057 GTCAAGACTCCAGAAGCTACATG 58.820 47.826 0.00 0.00 0.00 3.21
4449 6979 3.834813 TGTCAAGACTCCAGAAGCTACAT 59.165 43.478 1.53 0.00 0.00 2.29
4450 6980 3.230976 TGTCAAGACTCCAGAAGCTACA 58.769 45.455 1.53 0.00 0.00 2.74
4451 6981 3.944055 TGTCAAGACTCCAGAAGCTAC 57.056 47.619 1.53 0.00 0.00 3.58
4452 6982 3.834813 ACATGTCAAGACTCCAGAAGCTA 59.165 43.478 0.00 0.00 0.00 3.32
4453 6983 2.636893 ACATGTCAAGACTCCAGAAGCT 59.363 45.455 0.00 0.00 0.00 3.74
4454 6984 2.999355 GACATGTCAAGACTCCAGAAGC 59.001 50.000 21.07 0.00 0.00 3.86
4455 6985 4.533919 AGACATGTCAAGACTCCAGAAG 57.466 45.455 27.02 0.00 0.00 2.85
4456 6986 4.963318 AAGACATGTCAAGACTCCAGAA 57.037 40.909 27.02 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.