Multiple sequence alignment - TraesCS6A01G224900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G224900 chr6A 100.000 2388 0 0 1 2388 422287053 422284666 0.000000e+00 4410
1 TraesCS6A01G224900 chr6A 95.000 300 15 0 15 314 49655340 49655041 2.780000e-129 472
2 TraesCS6A01G224900 chr4D 90.196 1071 71 15 1317 2379 143787354 143786310 0.000000e+00 1365
3 TraesCS6A01G224900 chr6D 89.377 1092 72 18 1317 2386 320243398 320242329 0.000000e+00 1334
4 TraesCS6A01G224900 chr5A 88.695 1088 81 17 1317 2388 121977302 121976241 0.000000e+00 1290
5 TraesCS6A01G224900 chr5A 95.667 300 13 0 15 314 146032966 146032667 1.280000e-132 483
6 TraesCS6A01G224900 chr5A 93.968 315 18 1 1 314 146092914 146092600 2.150000e-130 475
7 TraesCS6A01G224900 chr5A 93.968 315 18 1 1 314 146153425 146153111 2.150000e-130 475
8 TraesCS6A01G224900 chr5A 93.968 315 18 1 1 314 449839835 449839521 2.150000e-130 475
9 TraesCS6A01G224900 chr1B 88.705 1089 80 21 1317 2388 346268034 346266972 0.000000e+00 1290
10 TraesCS6A01G224900 chr3B 88.381 1093 84 17 1317 2388 658820438 658819368 0.000000e+00 1275
11 TraesCS6A01G224900 chr4B 88.273 1100 79 19 1317 2388 206821278 206822355 0.000000e+00 1271
12 TraesCS6A01G224900 chr4B 95.089 448 21 1 1 447 297331105 297331552 0.000000e+00 704
13 TraesCS6A01G224900 chr2B 88.355 1082 84 19 1317 2388 686386999 686385950 0.000000e+00 1262
14 TraesCS6A01G224900 chr6B 88.067 1081 84 21 1317 2388 170447134 170448178 0.000000e+00 1240
15 TraesCS6A01G224900 chr6B 91.779 815 44 16 1580 2388 384387300 384386503 0.000000e+00 1112
16 TraesCS6A01G224900 chr7D 90.518 907 48 22 443 1315 582117305 582118207 0.000000e+00 1164
17 TraesCS6A01G224900 chr7D 95.745 329 12 2 3 330 61948114 61947787 1.630000e-146 529
18 TraesCS6A01G224900 chr7D 86.311 431 32 13 9 434 151508406 151508814 6.060000e-121 444
19 TraesCS6A01G224900 chr7D 95.522 134 6 0 314 447 61947773 61947640 5.170000e-52 215
20 TraesCS6A01G224900 chr7B 88.644 907 65 12 445 1316 649846861 649847764 0.000000e+00 1070
21 TraesCS6A01G224900 chr7B 91.600 250 14 5 188 434 748319530 748319285 2.940000e-89 339
22 TraesCS6A01G224900 chr1A 88.819 635 57 11 1729 2359 17962822 17963446 0.000000e+00 767
23 TraesCS6A01G224900 chr7A 93.357 286 19 0 1030 1315 674018202 674018487 7.890000e-115 424
24 TraesCS6A01G224900 chr7A 86.486 333 20 11 634 944 674017718 674018047 2.270000e-90 342
25 TraesCS6A01G224900 chr7A 94.231 156 9 0 443 598 674017562 674017717 3.070000e-59 239
26 TraesCS6A01G224900 chr3A 85.098 255 28 4 1317 1564 574497316 574497065 3.940000e-63 252


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G224900 chr6A 422284666 422287053 2387 True 4410 4410 100.000 1 2388 1 chr6A.!!$R2 2387
1 TraesCS6A01G224900 chr4D 143786310 143787354 1044 True 1365 1365 90.196 1317 2379 1 chr4D.!!$R1 1062
2 TraesCS6A01G224900 chr6D 320242329 320243398 1069 True 1334 1334 89.377 1317 2386 1 chr6D.!!$R1 1069
3 TraesCS6A01G224900 chr5A 121976241 121977302 1061 True 1290 1290 88.695 1317 2388 1 chr5A.!!$R1 1071
4 TraesCS6A01G224900 chr1B 346266972 346268034 1062 True 1290 1290 88.705 1317 2388 1 chr1B.!!$R1 1071
5 TraesCS6A01G224900 chr3B 658819368 658820438 1070 True 1275 1275 88.381 1317 2388 1 chr3B.!!$R1 1071
6 TraesCS6A01G224900 chr4B 206821278 206822355 1077 False 1271 1271 88.273 1317 2388 1 chr4B.!!$F1 1071
7 TraesCS6A01G224900 chr2B 686385950 686386999 1049 True 1262 1262 88.355 1317 2388 1 chr2B.!!$R1 1071
8 TraesCS6A01G224900 chr6B 170447134 170448178 1044 False 1240 1240 88.067 1317 2388 1 chr6B.!!$F1 1071
9 TraesCS6A01G224900 chr6B 384386503 384387300 797 True 1112 1112 91.779 1580 2388 1 chr6B.!!$R1 808
10 TraesCS6A01G224900 chr7D 582117305 582118207 902 False 1164 1164 90.518 443 1315 1 chr7D.!!$F2 872
11 TraesCS6A01G224900 chr7B 649846861 649847764 903 False 1070 1070 88.644 445 1316 1 chr7B.!!$F1 871
12 TraesCS6A01G224900 chr1A 17962822 17963446 624 False 767 767 88.819 1729 2359 1 chr1A.!!$F1 630
13 TraesCS6A01G224900 chr7A 674017562 674018487 925 False 335 424 91.358 443 1315 3 chr7A.!!$F1 872

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
38 39 0.029300 TTTGCGTGCTTCAACTCTGC 59.971 50.0 0.00 0.0 0.00 4.26 F
77 78 0.041386 ACTGACTAGTCCCCTGGTCC 59.959 60.0 20.11 0.0 45.77 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1236 1385 0.038159 CCGAAGAGCCTCTTGAACGT 60.038 55.0 12.63 0.0 36.73 3.99 R
1570 1763 0.177836 CACACACACACTGGAGGACA 59.822 55.0 0.00 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.573337 ACTGCTTAGAATCTTCCATTTGC 57.427 39.130 0.00 0.00 0.00 3.68
24 25 4.095483 ACTGCTTAGAATCTTCCATTTGCG 59.905 41.667 0.00 0.00 0.00 4.85
25 26 4.009675 TGCTTAGAATCTTCCATTTGCGT 58.990 39.130 0.00 0.00 0.00 5.24
26 27 4.142622 TGCTTAGAATCTTCCATTTGCGTG 60.143 41.667 0.00 0.00 0.00 5.34
27 28 2.927553 AGAATCTTCCATTTGCGTGC 57.072 45.000 0.00 0.00 0.00 5.34
28 29 2.440409 AGAATCTTCCATTTGCGTGCT 58.560 42.857 0.00 0.00 0.00 4.40
29 30 2.821969 AGAATCTTCCATTTGCGTGCTT 59.178 40.909 0.00 0.00 0.00 3.91
30 31 2.927553 ATCTTCCATTTGCGTGCTTC 57.072 45.000 0.00 0.00 0.00 3.86
31 32 1.603456 TCTTCCATTTGCGTGCTTCA 58.397 45.000 0.00 0.00 0.00 3.02
32 33 1.952990 TCTTCCATTTGCGTGCTTCAA 59.047 42.857 0.00 0.00 0.00 2.69
33 34 2.053627 CTTCCATTTGCGTGCTTCAAC 58.946 47.619 0.00 0.00 0.00 3.18
34 35 1.317613 TCCATTTGCGTGCTTCAACT 58.682 45.000 0.00 0.00 0.00 3.16
35 36 1.266718 TCCATTTGCGTGCTTCAACTC 59.733 47.619 0.00 0.00 0.00 3.01
36 37 1.267806 CCATTTGCGTGCTTCAACTCT 59.732 47.619 0.00 0.00 0.00 3.24
37 38 2.313234 CATTTGCGTGCTTCAACTCTG 58.687 47.619 0.00 0.00 0.00 3.35
38 39 0.029300 TTTGCGTGCTTCAACTCTGC 59.971 50.000 0.00 0.00 0.00 4.26
39 40 1.094650 TTGCGTGCTTCAACTCTGCA 61.095 50.000 0.00 0.00 0.00 4.41
40 41 1.094650 TGCGTGCTTCAACTCTGCAA 61.095 50.000 0.00 0.00 38.50 4.08
41 42 0.239347 GCGTGCTTCAACTCTGCAAT 59.761 50.000 0.00 0.00 38.50 3.56
42 43 1.335324 GCGTGCTTCAACTCTGCAATT 60.335 47.619 0.00 0.00 38.50 2.32
43 44 2.313234 CGTGCTTCAACTCTGCAATTG 58.687 47.619 0.00 0.00 38.50 2.32
44 45 2.031769 CGTGCTTCAACTCTGCAATTGA 60.032 45.455 10.34 4.10 38.50 2.57
45 46 3.365666 CGTGCTTCAACTCTGCAATTGAT 60.366 43.478 10.34 0.00 38.50 2.57
46 47 3.918591 GTGCTTCAACTCTGCAATTGATG 59.081 43.478 10.34 10.77 38.50 3.07
63 64 4.100981 GCATCTCCTGCGACTGAC 57.899 61.111 0.00 0.00 41.97 3.51
64 65 1.515020 GCATCTCCTGCGACTGACT 59.485 57.895 0.00 0.00 41.97 3.41
65 66 0.741326 GCATCTCCTGCGACTGACTA 59.259 55.000 0.00 0.00 41.97 2.59
66 67 1.268999 GCATCTCCTGCGACTGACTAG 60.269 57.143 0.00 0.00 41.97 2.57
67 68 2.020720 CATCTCCTGCGACTGACTAGT 58.979 52.381 0.00 0.00 40.66 2.57
75 76 3.693810 GACTGACTAGTCCCCTGGT 57.306 57.895 20.11 10.55 46.14 4.00
76 77 1.476477 GACTGACTAGTCCCCTGGTC 58.524 60.000 20.11 14.75 46.14 4.02
77 78 0.041386 ACTGACTAGTCCCCTGGTCC 59.959 60.000 20.11 0.00 45.77 4.46
78 79 0.688087 CTGACTAGTCCCCTGGTCCC 60.688 65.000 20.11 0.00 45.77 4.46
79 80 1.153695 TGACTAGTCCCCTGGTCCCT 61.154 60.000 20.11 0.00 45.77 4.20
80 81 0.688087 GACTAGTCCCCTGGTCCCTG 60.688 65.000 12.13 0.00 41.86 4.45
81 82 2.040606 TAGTCCCCTGGTCCCTGC 59.959 66.667 0.00 0.00 0.00 4.85
82 83 2.537714 CTAGTCCCCTGGTCCCTGCT 62.538 65.000 0.00 0.00 0.00 4.24
83 84 2.119847 TAGTCCCCTGGTCCCTGCTT 62.120 60.000 0.00 0.00 0.00 3.91
84 85 2.610859 TCCCCTGGTCCCTGCTTC 60.611 66.667 0.00 0.00 0.00 3.86
85 86 2.612115 CCCCTGGTCCCTGCTTCT 60.612 66.667 0.00 0.00 0.00 2.85
86 87 2.234296 CCCCTGGTCCCTGCTTCTT 61.234 63.158 0.00 0.00 0.00 2.52
87 88 1.770324 CCCTGGTCCCTGCTTCTTT 59.230 57.895 0.00 0.00 0.00 2.52
88 89 0.610232 CCCTGGTCCCTGCTTCTTTG 60.610 60.000 0.00 0.00 0.00 2.77
89 90 0.610232 CCTGGTCCCTGCTTCTTTGG 60.610 60.000 0.00 0.00 0.00 3.28
90 91 0.401738 CTGGTCCCTGCTTCTTTGGA 59.598 55.000 0.00 0.00 0.00 3.53
91 92 0.401738 TGGTCCCTGCTTCTTTGGAG 59.598 55.000 0.00 0.00 0.00 3.86
92 93 0.693049 GGTCCCTGCTTCTTTGGAGA 59.307 55.000 0.00 0.00 0.00 3.71
93 94 1.283321 GGTCCCTGCTTCTTTGGAGAT 59.717 52.381 0.00 0.00 0.00 2.75
94 95 2.505819 GGTCCCTGCTTCTTTGGAGATA 59.494 50.000 0.00 0.00 0.00 1.98
95 96 3.054361 GGTCCCTGCTTCTTTGGAGATAA 60.054 47.826 0.00 0.00 0.00 1.75
96 97 4.385754 GGTCCCTGCTTCTTTGGAGATAAT 60.386 45.833 0.00 0.00 0.00 1.28
97 98 4.819088 GTCCCTGCTTCTTTGGAGATAATC 59.181 45.833 0.00 0.00 0.00 1.75
98 99 4.723789 TCCCTGCTTCTTTGGAGATAATCT 59.276 41.667 0.00 0.00 0.00 2.40
99 100 5.192522 TCCCTGCTTCTTTGGAGATAATCTT 59.807 40.000 0.00 0.00 0.00 2.40
100 101 5.530543 CCCTGCTTCTTTGGAGATAATCTTC 59.469 44.000 0.00 0.00 0.00 2.87
101 102 6.118170 CCTGCTTCTTTGGAGATAATCTTCA 58.882 40.000 0.00 0.00 27.95 3.02
102 103 6.771749 CCTGCTTCTTTGGAGATAATCTTCAT 59.228 38.462 0.00 0.00 30.81 2.57
103 104 7.935755 CCTGCTTCTTTGGAGATAATCTTCATA 59.064 37.037 0.00 0.00 30.81 2.15
104 105 9.504708 CTGCTTCTTTGGAGATAATCTTCATAT 57.495 33.333 0.00 0.00 30.81 1.78
124 125 9.787532 TTCATATAAGTTTTGTGAAAGCTATGC 57.212 29.630 3.60 0.00 31.33 3.14
125 126 9.177608 TCATATAAGTTTTGTGAAAGCTATGCT 57.822 29.630 0.00 0.00 42.56 3.79
126 127 9.443283 CATATAAGTTTTGTGAAAGCTATGCTC 57.557 33.333 0.00 0.00 38.25 4.26
127 128 7.693969 ATAAGTTTTGTGAAAGCTATGCTCT 57.306 32.000 0.00 0.00 38.25 4.09
128 129 6.396829 AAGTTTTGTGAAAGCTATGCTCTT 57.603 33.333 0.00 0.00 38.25 2.85
129 130 5.766222 AGTTTTGTGAAAGCTATGCTCTTG 58.234 37.500 0.00 0.00 38.25 3.02
130 131 4.771590 TTTGTGAAAGCTATGCTCTTGG 57.228 40.909 0.00 0.00 38.25 3.61
131 132 3.701205 TGTGAAAGCTATGCTCTTGGA 57.299 42.857 0.00 0.00 38.25 3.53
132 133 4.226427 TGTGAAAGCTATGCTCTTGGAT 57.774 40.909 0.00 0.00 38.25 3.41
133 134 4.194640 TGTGAAAGCTATGCTCTTGGATC 58.805 43.478 0.00 0.00 38.25 3.36
134 135 4.080695 TGTGAAAGCTATGCTCTTGGATCT 60.081 41.667 0.00 0.00 38.25 2.75
135 136 4.272991 GTGAAAGCTATGCTCTTGGATCTG 59.727 45.833 0.00 0.00 38.25 2.90
136 137 4.080695 TGAAAGCTATGCTCTTGGATCTGT 60.081 41.667 0.00 0.00 38.25 3.41
137 138 5.129320 TGAAAGCTATGCTCTTGGATCTGTA 59.871 40.000 0.00 0.00 38.25 2.74
138 139 4.599047 AGCTATGCTCTTGGATCTGTAC 57.401 45.455 0.00 0.00 30.62 2.90
139 140 3.963374 AGCTATGCTCTTGGATCTGTACA 59.037 43.478 0.00 0.00 30.62 2.90
140 141 4.054671 GCTATGCTCTTGGATCTGTACAC 58.945 47.826 0.00 0.00 0.00 2.90
141 142 4.442052 GCTATGCTCTTGGATCTGTACACA 60.442 45.833 0.00 0.00 0.00 3.72
142 143 4.558226 ATGCTCTTGGATCTGTACACAA 57.442 40.909 0.00 0.00 0.00 3.33
143 144 4.350368 TGCTCTTGGATCTGTACACAAA 57.650 40.909 0.00 0.00 0.00 2.83
144 145 4.910195 TGCTCTTGGATCTGTACACAAAT 58.090 39.130 0.00 0.00 0.00 2.32
145 146 4.696877 TGCTCTTGGATCTGTACACAAATG 59.303 41.667 0.00 0.00 0.00 2.32
146 147 4.697352 GCTCTTGGATCTGTACACAAATGT 59.303 41.667 0.00 0.00 43.30 2.71
147 148 5.874810 GCTCTTGGATCTGTACACAAATGTA 59.125 40.000 0.00 0.00 40.48 2.29
148 149 6.540189 GCTCTTGGATCTGTACACAAATGTAT 59.460 38.462 0.00 0.00 43.21 2.29
149 150 7.710907 GCTCTTGGATCTGTACACAAATGTATA 59.289 37.037 0.00 0.00 43.21 1.47
150 151 8.942338 TCTTGGATCTGTACACAAATGTATAC 57.058 34.615 0.00 0.00 43.21 1.47
151 152 8.758829 TCTTGGATCTGTACACAAATGTATACT 58.241 33.333 4.17 0.00 43.21 2.12
158 159 9.454585 TCTGTACACAAATGTATACTATTACGC 57.545 33.333 4.17 0.00 43.21 4.42
159 160 9.459640 CTGTACACAAATGTATACTATTACGCT 57.540 33.333 4.17 0.00 43.21 5.07
160 161 9.240159 TGTACACAAATGTATACTATTACGCTG 57.760 33.333 4.17 1.53 43.21 5.18
161 162 7.173863 ACACAAATGTATACTATTACGCTGC 57.826 36.000 4.17 0.00 37.26 5.25
162 163 6.984474 ACACAAATGTATACTATTACGCTGCT 59.016 34.615 4.17 0.00 37.26 4.24
163 164 7.042725 ACACAAATGTATACTATTACGCTGCTG 60.043 37.037 4.17 0.00 37.26 4.41
164 165 6.073765 ACAAATGTATACTATTACGCTGCTGC 60.074 38.462 5.34 5.34 0.00 5.25
165 166 4.848562 TGTATACTATTACGCTGCTGCT 57.151 40.909 14.03 3.65 36.97 4.24
166 167 4.795268 TGTATACTATTACGCTGCTGCTC 58.205 43.478 14.03 0.00 36.97 4.26
167 168 2.795175 TACTATTACGCTGCTGCTCC 57.205 50.000 14.03 0.00 36.97 4.70
168 169 1.115467 ACTATTACGCTGCTGCTCCT 58.885 50.000 14.03 0.00 36.97 3.69
169 170 1.067821 ACTATTACGCTGCTGCTCCTC 59.932 52.381 14.03 0.00 36.97 3.71
170 171 1.067669 CTATTACGCTGCTGCTCCTCA 59.932 52.381 14.03 0.00 36.97 3.86
171 172 0.250234 ATTACGCTGCTGCTCCTCAA 59.750 50.000 14.03 1.05 36.97 3.02
172 173 0.250234 TTACGCTGCTGCTCCTCAAT 59.750 50.000 14.03 0.00 36.97 2.57
173 174 0.460811 TACGCTGCTGCTCCTCAATG 60.461 55.000 14.03 0.00 36.97 2.82
174 175 1.449070 CGCTGCTGCTCCTCAATGA 60.449 57.895 14.03 0.00 36.97 2.57
175 176 0.814410 CGCTGCTGCTCCTCAATGAT 60.814 55.000 14.03 0.00 36.97 2.45
176 177 1.539712 CGCTGCTGCTCCTCAATGATA 60.540 52.381 14.03 0.00 36.97 2.15
177 178 2.780714 GCTGCTGCTCCTCAATGATAT 58.219 47.619 8.53 0.00 36.03 1.63
178 179 3.147629 GCTGCTGCTCCTCAATGATATT 58.852 45.455 8.53 0.00 36.03 1.28
179 180 4.321718 GCTGCTGCTCCTCAATGATATTA 58.678 43.478 8.53 0.00 36.03 0.98
180 181 4.758674 GCTGCTGCTCCTCAATGATATTAA 59.241 41.667 8.53 0.00 36.03 1.40
181 182 5.334724 GCTGCTGCTCCTCAATGATATTAAC 60.335 44.000 8.53 0.00 36.03 2.01
182 183 5.933617 TGCTGCTCCTCAATGATATTAACT 58.066 37.500 0.00 0.00 0.00 2.24
183 184 6.359804 TGCTGCTCCTCAATGATATTAACTT 58.640 36.000 0.00 0.00 0.00 2.66
184 185 7.508687 TGCTGCTCCTCAATGATATTAACTTA 58.491 34.615 0.00 0.00 0.00 2.24
185 186 7.442364 TGCTGCTCCTCAATGATATTAACTTAC 59.558 37.037 0.00 0.00 0.00 2.34
186 187 7.095017 GCTGCTCCTCAATGATATTAACTTACC 60.095 40.741 0.00 0.00 0.00 2.85
187 188 7.224297 TGCTCCTCAATGATATTAACTTACCC 58.776 38.462 0.00 0.00 0.00 3.69
188 189 7.147391 TGCTCCTCAATGATATTAACTTACCCA 60.147 37.037 0.00 0.00 0.00 4.51
189 190 7.389053 GCTCCTCAATGATATTAACTTACCCAG 59.611 40.741 0.00 0.00 0.00 4.45
190 191 8.561536 TCCTCAATGATATTAACTTACCCAGA 57.438 34.615 0.00 0.00 0.00 3.86
191 192 8.429641 TCCTCAATGATATTAACTTACCCAGAC 58.570 37.037 0.00 0.00 0.00 3.51
192 193 8.432805 CCTCAATGATATTAACTTACCCAGACT 58.567 37.037 0.00 0.00 0.00 3.24
193 194 9.482627 CTCAATGATATTAACTTACCCAGACTC 57.517 37.037 0.00 0.00 0.00 3.36
194 195 8.429641 TCAATGATATTAACTTACCCAGACTCC 58.570 37.037 0.00 0.00 0.00 3.85
195 196 6.742559 TGATATTAACTTACCCAGACTCCC 57.257 41.667 0.00 0.00 0.00 4.30
196 197 6.206787 TGATATTAACTTACCCAGACTCCCA 58.793 40.000 0.00 0.00 0.00 4.37
197 198 6.674861 TGATATTAACTTACCCAGACTCCCAA 59.325 38.462 0.00 0.00 0.00 4.12
198 199 5.853572 ATTAACTTACCCAGACTCCCAAA 57.146 39.130 0.00 0.00 0.00 3.28
199 200 5.853572 TTAACTTACCCAGACTCCCAAAT 57.146 39.130 0.00 0.00 0.00 2.32
200 201 4.302559 AACTTACCCAGACTCCCAAATC 57.697 45.455 0.00 0.00 0.00 2.17
201 202 3.256704 ACTTACCCAGACTCCCAAATCA 58.743 45.455 0.00 0.00 0.00 2.57
202 203 3.009143 ACTTACCCAGACTCCCAAATCAC 59.991 47.826 0.00 0.00 0.00 3.06
203 204 1.444933 ACCCAGACTCCCAAATCACA 58.555 50.000 0.00 0.00 0.00 3.58
204 205 1.780309 ACCCAGACTCCCAAATCACAA 59.220 47.619 0.00 0.00 0.00 3.33
205 206 2.176798 ACCCAGACTCCCAAATCACAAA 59.823 45.455 0.00 0.00 0.00 2.83
206 207 2.821969 CCCAGACTCCCAAATCACAAAG 59.178 50.000 0.00 0.00 0.00 2.77
207 208 3.498481 CCCAGACTCCCAAATCACAAAGA 60.498 47.826 0.00 0.00 0.00 2.52
208 209 4.144297 CCAGACTCCCAAATCACAAAGAA 58.856 43.478 0.00 0.00 0.00 2.52
209 210 4.584325 CCAGACTCCCAAATCACAAAGAAA 59.416 41.667 0.00 0.00 0.00 2.52
210 211 5.278660 CCAGACTCCCAAATCACAAAGAAAG 60.279 44.000 0.00 0.00 0.00 2.62
211 212 4.279420 AGACTCCCAAATCACAAAGAAAGC 59.721 41.667 0.00 0.00 0.00 3.51
212 213 3.960102 ACTCCCAAATCACAAAGAAAGCA 59.040 39.130 0.00 0.00 0.00 3.91
213 214 4.038402 ACTCCCAAATCACAAAGAAAGCAG 59.962 41.667 0.00 0.00 0.00 4.24
214 215 4.214310 TCCCAAATCACAAAGAAAGCAGA 58.786 39.130 0.00 0.00 0.00 4.26
215 216 4.648762 TCCCAAATCACAAAGAAAGCAGAA 59.351 37.500 0.00 0.00 0.00 3.02
216 217 4.986659 CCCAAATCACAAAGAAAGCAGAAG 59.013 41.667 0.00 0.00 0.00 2.85
217 218 5.452356 CCCAAATCACAAAGAAAGCAGAAGT 60.452 40.000 0.00 0.00 0.00 3.01
218 219 6.044682 CCAAATCACAAAGAAAGCAGAAGTT 58.955 36.000 0.00 0.00 0.00 2.66
219 220 6.199719 CCAAATCACAAAGAAAGCAGAAGTTC 59.800 38.462 0.00 0.00 0.00 3.01
220 221 4.536364 TCACAAAGAAAGCAGAAGTTCG 57.464 40.909 0.00 0.00 0.00 3.95
221 222 3.312421 TCACAAAGAAAGCAGAAGTTCGG 59.688 43.478 0.00 0.00 0.00 4.30
222 223 2.618709 ACAAAGAAAGCAGAAGTTCGGG 59.381 45.455 5.14 0.00 0.00 5.14
223 224 2.618709 CAAAGAAAGCAGAAGTTCGGGT 59.381 45.455 1.63 1.63 0.00 5.28
224 225 2.640316 AGAAAGCAGAAGTTCGGGTT 57.360 45.000 13.64 13.64 33.97 4.11
225 226 2.495084 AGAAAGCAGAAGTTCGGGTTC 58.505 47.619 18.53 12.70 31.51 3.62
226 227 2.104963 AGAAAGCAGAAGTTCGGGTTCT 59.895 45.455 18.53 14.32 31.51 3.01
227 228 3.323979 AGAAAGCAGAAGTTCGGGTTCTA 59.676 43.478 18.53 0.00 31.51 2.10
228 229 3.983044 AAGCAGAAGTTCGGGTTCTAT 57.017 42.857 13.64 0.00 32.81 1.98
229 230 3.528597 AGCAGAAGTTCGGGTTCTATC 57.471 47.619 1.63 0.00 32.81 2.08
230 231 2.159226 AGCAGAAGTTCGGGTTCTATCG 60.159 50.000 1.63 0.00 32.81 2.92
231 232 2.159282 GCAGAAGTTCGGGTTCTATCGA 60.159 50.000 5.14 0.00 32.81 3.59
232 233 3.696898 CAGAAGTTCGGGTTCTATCGAG 58.303 50.000 0.00 0.00 36.72 4.04
233 234 2.099427 AGAAGTTCGGGTTCTATCGAGC 59.901 50.000 0.00 0.00 36.72 5.03
234 235 1.765230 AGTTCGGGTTCTATCGAGCT 58.235 50.000 0.00 0.00 40.94 4.09
235 236 2.928334 AGTTCGGGTTCTATCGAGCTA 58.072 47.619 0.00 0.00 43.16 3.32
236 237 2.617774 AGTTCGGGTTCTATCGAGCTAC 59.382 50.000 0.00 0.00 43.16 3.58
237 238 2.336945 TCGGGTTCTATCGAGCTACA 57.663 50.000 0.00 0.00 0.00 2.74
238 239 2.646930 TCGGGTTCTATCGAGCTACAA 58.353 47.619 0.00 0.00 0.00 2.41
239 240 2.617308 TCGGGTTCTATCGAGCTACAAG 59.383 50.000 0.00 0.00 0.00 3.16
240 241 2.358267 CGGGTTCTATCGAGCTACAAGT 59.642 50.000 0.00 0.00 0.00 3.16
241 242 3.181489 CGGGTTCTATCGAGCTACAAGTT 60.181 47.826 0.00 0.00 0.00 2.66
242 243 4.361420 GGGTTCTATCGAGCTACAAGTTC 58.639 47.826 0.00 0.00 0.00 3.01
243 244 4.142227 GGGTTCTATCGAGCTACAAGTTCA 60.142 45.833 0.00 0.00 0.00 3.18
244 245 5.038033 GGTTCTATCGAGCTACAAGTTCAG 58.962 45.833 0.00 0.00 0.00 3.02
245 246 5.163642 GGTTCTATCGAGCTACAAGTTCAGA 60.164 44.000 0.00 0.00 0.00 3.27
246 247 5.743026 TCTATCGAGCTACAAGTTCAGAG 57.257 43.478 0.00 0.00 0.00 3.35
247 248 5.186942 TCTATCGAGCTACAAGTTCAGAGT 58.813 41.667 0.00 0.00 0.00 3.24
248 249 4.792521 ATCGAGCTACAAGTTCAGAGTT 57.207 40.909 0.00 0.00 0.00 3.01
249 250 4.585955 TCGAGCTACAAGTTCAGAGTTT 57.414 40.909 0.00 0.00 0.00 2.66
250 251 4.547532 TCGAGCTACAAGTTCAGAGTTTC 58.452 43.478 0.00 0.00 0.00 2.78
251 252 4.278669 TCGAGCTACAAGTTCAGAGTTTCT 59.721 41.667 0.00 0.00 0.00 2.52
252 253 4.619336 CGAGCTACAAGTTCAGAGTTTCTC 59.381 45.833 0.00 0.00 0.00 2.87
253 254 4.888917 AGCTACAAGTTCAGAGTTTCTCC 58.111 43.478 0.00 0.00 0.00 3.71
254 255 3.997681 GCTACAAGTTCAGAGTTTCTCCC 59.002 47.826 0.00 0.00 0.00 4.30
255 256 4.262678 GCTACAAGTTCAGAGTTTCTCCCT 60.263 45.833 0.00 0.00 0.00 4.20
256 257 4.779993 ACAAGTTCAGAGTTTCTCCCTT 57.220 40.909 0.00 0.00 0.00 3.95
257 258 4.709250 ACAAGTTCAGAGTTTCTCCCTTC 58.291 43.478 0.00 0.00 0.00 3.46
258 259 4.410555 ACAAGTTCAGAGTTTCTCCCTTCT 59.589 41.667 0.00 0.00 0.00 2.85
259 260 4.882842 AGTTCAGAGTTTCTCCCTTCTC 57.117 45.455 0.00 0.00 0.00 2.87
260 261 4.488770 AGTTCAGAGTTTCTCCCTTCTCT 58.511 43.478 0.00 0.00 37.70 3.10
267 268 7.747809 AGAGTTTCTCCCTTCTCTGAATAAT 57.252 36.000 0.00 0.00 36.17 1.28
268 269 8.156822 AGAGTTTCTCCCTTCTCTGAATAATT 57.843 34.615 0.00 0.00 36.17 1.40
269 270 8.264347 AGAGTTTCTCCCTTCTCTGAATAATTC 58.736 37.037 0.00 0.00 36.17 2.17
270 271 7.922382 AGTTTCTCCCTTCTCTGAATAATTCA 58.078 34.615 0.00 0.00 38.17 2.57
284 285 7.092137 TGAATAATTCAGATTTCTGCACCTG 57.908 36.000 2.60 0.00 43.46 4.00
285 286 3.863142 AATTCAGATTTCTGCACCTGC 57.137 42.857 2.60 0.00 43.46 4.85
286 287 8.712463 TGAATAATTCAGATTTCTGCACCTGCA 61.712 37.037 2.60 0.00 43.46 4.41
295 296 3.578456 GCACCTGCATAAGCGTGT 58.422 55.556 0.00 0.00 46.23 4.49
296 297 2.762360 GCACCTGCATAAGCGTGTA 58.238 52.632 0.00 0.00 46.23 2.90
297 298 0.652592 GCACCTGCATAAGCGTGTAG 59.347 55.000 0.00 0.00 46.23 2.74
298 299 2.007049 GCACCTGCATAAGCGTGTAGT 61.007 52.381 0.00 0.00 46.23 2.73
299 300 2.737359 GCACCTGCATAAGCGTGTAGTA 60.737 50.000 0.00 0.00 46.23 1.82
300 301 3.517602 CACCTGCATAAGCGTGTAGTAA 58.482 45.455 0.00 0.00 46.23 2.24
301 302 4.119862 CACCTGCATAAGCGTGTAGTAAT 58.880 43.478 0.00 0.00 46.23 1.89
302 303 4.570772 CACCTGCATAAGCGTGTAGTAATT 59.429 41.667 0.00 0.00 46.23 1.40
303 304 5.064707 CACCTGCATAAGCGTGTAGTAATTT 59.935 40.000 0.00 0.00 46.23 1.82
304 305 5.293569 ACCTGCATAAGCGTGTAGTAATTTC 59.706 40.000 0.00 0.00 46.23 2.17
305 306 5.277345 CCTGCATAAGCGTGTAGTAATTTCC 60.277 44.000 0.00 0.00 46.23 3.13
306 307 4.573201 TGCATAAGCGTGTAGTAATTTCCC 59.427 41.667 0.00 0.00 46.23 3.97
307 308 4.814771 GCATAAGCGTGTAGTAATTTCCCT 59.185 41.667 0.00 0.00 0.00 4.20
308 309 5.296035 GCATAAGCGTGTAGTAATTTCCCTT 59.704 40.000 0.00 0.00 0.00 3.95
309 310 6.480981 GCATAAGCGTGTAGTAATTTCCCTTA 59.519 38.462 0.00 0.00 0.00 2.69
310 311 7.172703 GCATAAGCGTGTAGTAATTTCCCTTAT 59.827 37.037 0.00 0.00 0.00 1.73
311 312 9.701098 CATAAGCGTGTAGTAATTTCCCTTATA 57.299 33.333 0.00 0.00 0.00 0.98
312 313 9.702494 ATAAGCGTGTAGTAATTTCCCTTATAC 57.298 33.333 0.00 0.00 0.00 1.47
313 314 7.116075 AGCGTGTAGTAATTTCCCTTATACA 57.884 36.000 0.00 0.00 0.00 2.29
314 315 7.558604 AGCGTGTAGTAATTTCCCTTATACAA 58.441 34.615 0.00 0.00 0.00 2.41
315 316 7.709613 AGCGTGTAGTAATTTCCCTTATACAAG 59.290 37.037 0.00 0.00 0.00 3.16
316 317 7.493645 GCGTGTAGTAATTTCCCTTATACAAGT 59.506 37.037 0.00 0.00 0.00 3.16
322 323 9.760077 AGTAATTTCCCTTATACAAGTATGACG 57.240 33.333 3.06 0.00 0.00 4.35
323 324 9.538508 GTAATTTCCCTTATACAAGTATGACGT 57.461 33.333 3.06 0.00 0.00 4.34
324 325 8.658499 AATTTCCCTTATACAAGTATGACGTC 57.342 34.615 9.11 9.11 0.00 4.34
325 326 7.414222 TTTCCCTTATACAAGTATGACGTCT 57.586 36.000 17.92 4.95 0.00 4.18
326 327 8.523915 TTTCCCTTATACAAGTATGACGTCTA 57.476 34.615 17.92 3.52 0.00 2.59
327 328 7.741027 TCCCTTATACAAGTATGACGTCTAG 57.259 40.000 17.92 2.83 0.00 2.43
328 329 7.285566 TCCCTTATACAAGTATGACGTCTAGT 58.714 38.462 17.92 6.81 0.00 2.57
329 330 7.776969 TCCCTTATACAAGTATGACGTCTAGTT 59.223 37.037 17.92 12.12 0.00 2.24
330 331 8.074972 CCCTTATACAAGTATGACGTCTAGTTC 58.925 40.741 17.92 3.20 0.00 3.01
331 332 8.618677 CCTTATACAAGTATGACGTCTAGTTCA 58.381 37.037 17.92 0.00 0.00 3.18
332 333 9.653067 CTTATACAAGTATGACGTCTAGTTCAG 57.347 37.037 17.92 7.48 0.00 3.02
333 334 5.961396 ACAAGTATGACGTCTAGTTCAGT 57.039 39.130 17.92 8.01 0.00 3.41
334 335 6.328641 ACAAGTATGACGTCTAGTTCAGTT 57.671 37.500 17.92 2.12 0.00 3.16
335 336 6.150318 ACAAGTATGACGTCTAGTTCAGTTG 58.850 40.000 17.92 14.65 0.00 3.16
336 337 4.734917 AGTATGACGTCTAGTTCAGTTGC 58.265 43.478 17.92 0.00 0.00 4.17
337 338 3.660501 ATGACGTCTAGTTCAGTTGCA 57.339 42.857 17.92 0.00 0.00 4.08
338 339 3.446310 TGACGTCTAGTTCAGTTGCAA 57.554 42.857 17.92 0.00 0.00 4.08
339 340 3.787785 TGACGTCTAGTTCAGTTGCAAA 58.212 40.909 17.92 0.00 0.00 3.68
340 341 4.185394 TGACGTCTAGTTCAGTTGCAAAA 58.815 39.130 17.92 0.00 0.00 2.44
341 342 4.033587 TGACGTCTAGTTCAGTTGCAAAAC 59.966 41.667 17.92 2.03 0.00 2.43
342 343 3.936453 ACGTCTAGTTCAGTTGCAAAACA 59.064 39.130 13.46 1.53 0.00 2.83
343 344 4.201783 ACGTCTAGTTCAGTTGCAAAACAC 60.202 41.667 13.46 3.80 0.00 3.32
344 345 4.598062 GTCTAGTTCAGTTGCAAAACACC 58.402 43.478 13.46 0.00 0.00 4.16
345 346 4.095782 GTCTAGTTCAGTTGCAAAACACCA 59.904 41.667 13.46 0.23 0.00 4.17
346 347 4.887071 TCTAGTTCAGTTGCAAAACACCAT 59.113 37.500 13.46 0.00 0.00 3.55
347 348 4.045636 AGTTCAGTTGCAAAACACCATC 57.954 40.909 13.46 0.00 0.00 3.51
348 349 3.701040 AGTTCAGTTGCAAAACACCATCT 59.299 39.130 13.46 0.00 0.00 2.90
349 350 4.160252 AGTTCAGTTGCAAAACACCATCTT 59.840 37.500 13.46 0.00 0.00 2.40
350 351 4.734398 TCAGTTGCAAAACACCATCTTT 57.266 36.364 0.00 0.00 0.00 2.52
351 352 5.083533 TCAGTTGCAAAACACCATCTTTT 57.916 34.783 0.00 0.00 0.00 2.27
352 353 5.486526 TCAGTTGCAAAACACCATCTTTTT 58.513 33.333 0.00 0.00 0.00 1.94
375 376 7.555639 TTTTGTTTTTGTTGTCGTACTTCTG 57.444 32.000 0.00 0.00 0.00 3.02
376 377 4.654015 TGTTTTTGTTGTCGTACTTCTGC 58.346 39.130 0.00 0.00 0.00 4.26
377 378 4.393680 TGTTTTTGTTGTCGTACTTCTGCT 59.606 37.500 0.00 0.00 0.00 4.24
378 379 5.581479 TGTTTTTGTTGTCGTACTTCTGCTA 59.419 36.000 0.00 0.00 0.00 3.49
379 380 5.646467 TTTTGTTGTCGTACTTCTGCTAC 57.354 39.130 0.00 0.00 0.00 3.58
380 381 4.579454 TTGTTGTCGTACTTCTGCTACT 57.421 40.909 0.00 0.00 0.00 2.57
381 382 4.579454 TGTTGTCGTACTTCTGCTACTT 57.421 40.909 0.00 0.00 0.00 2.24
382 383 4.295870 TGTTGTCGTACTTCTGCTACTTG 58.704 43.478 0.00 0.00 0.00 3.16
383 384 4.037089 TGTTGTCGTACTTCTGCTACTTGA 59.963 41.667 0.00 0.00 0.00 3.02
384 385 4.421033 TGTCGTACTTCTGCTACTTGAG 57.579 45.455 0.00 0.00 0.00 3.02
385 386 4.070009 TGTCGTACTTCTGCTACTTGAGA 58.930 43.478 0.00 0.00 0.00 3.27
386 387 4.154375 TGTCGTACTTCTGCTACTTGAGAG 59.846 45.833 0.00 0.00 0.00 3.20
387 388 4.392445 GTCGTACTTCTGCTACTTGAGAGA 59.608 45.833 0.00 0.00 0.00 3.10
388 389 5.065474 GTCGTACTTCTGCTACTTGAGAGAT 59.935 44.000 0.00 0.00 0.00 2.75
389 390 5.065346 TCGTACTTCTGCTACTTGAGAGATG 59.935 44.000 0.00 0.00 0.00 2.90
390 391 4.734398 ACTTCTGCTACTTGAGAGATGG 57.266 45.455 0.00 0.00 0.00 3.51
391 392 4.348486 ACTTCTGCTACTTGAGAGATGGA 58.652 43.478 0.00 0.00 0.00 3.41
392 393 4.961730 ACTTCTGCTACTTGAGAGATGGAT 59.038 41.667 0.00 0.00 0.00 3.41
393 394 6.132658 ACTTCTGCTACTTGAGAGATGGATA 58.867 40.000 0.00 0.00 0.00 2.59
394 395 6.040391 ACTTCTGCTACTTGAGAGATGGATAC 59.960 42.308 0.00 0.00 0.00 2.24
395 396 4.830046 TCTGCTACTTGAGAGATGGATACC 59.170 45.833 0.00 0.00 0.00 2.73
396 397 4.546674 TGCTACTTGAGAGATGGATACCA 58.453 43.478 0.00 0.00 38.19 3.25
397 398 4.342378 TGCTACTTGAGAGATGGATACCAC 59.658 45.833 0.00 0.00 35.80 4.16
398 399 4.586841 GCTACTTGAGAGATGGATACCACT 59.413 45.833 0.00 0.00 35.80 4.00
399 400 5.770663 GCTACTTGAGAGATGGATACCACTA 59.229 44.000 0.00 0.00 35.80 2.74
400 401 6.265649 GCTACTTGAGAGATGGATACCACTAA 59.734 42.308 0.00 0.00 35.80 2.24
401 402 6.723298 ACTTGAGAGATGGATACCACTAAG 57.277 41.667 0.00 0.00 35.80 2.18
402 403 5.600484 ACTTGAGAGATGGATACCACTAAGG 59.400 44.000 0.00 0.00 45.67 2.69
415 416 4.273148 CCACTAAGGTAAGCTGTCAACT 57.727 45.455 0.00 0.00 0.00 3.16
416 417 4.642429 CCACTAAGGTAAGCTGTCAACTT 58.358 43.478 0.00 0.00 0.00 2.66
417 418 4.691216 CCACTAAGGTAAGCTGTCAACTTC 59.309 45.833 0.00 0.00 0.00 3.01
418 419 5.511545 CCACTAAGGTAAGCTGTCAACTTCT 60.512 44.000 0.00 0.00 0.00 2.85
419 420 6.295123 CCACTAAGGTAAGCTGTCAACTTCTA 60.295 42.308 0.00 0.00 0.00 2.10
420 421 6.586844 CACTAAGGTAAGCTGTCAACTTCTAC 59.413 42.308 0.00 0.00 0.00 2.59
421 422 4.175787 AGGTAAGCTGTCAACTTCTACG 57.824 45.455 0.00 0.00 0.00 3.51
422 423 3.573110 AGGTAAGCTGTCAACTTCTACGT 59.427 43.478 0.00 0.00 0.00 3.57
423 424 4.763793 AGGTAAGCTGTCAACTTCTACGTA 59.236 41.667 0.00 0.00 0.00 3.57
424 425 5.418209 AGGTAAGCTGTCAACTTCTACGTAT 59.582 40.000 0.00 0.00 0.00 3.06
425 426 5.515626 GGTAAGCTGTCAACTTCTACGTATG 59.484 44.000 0.00 0.00 0.00 2.39
426 427 3.512680 AGCTGTCAACTTCTACGTATGC 58.487 45.455 0.00 0.00 0.00 3.14
427 428 3.056821 AGCTGTCAACTTCTACGTATGCA 60.057 43.478 0.00 0.00 0.00 3.96
428 429 3.060895 GCTGTCAACTTCTACGTATGCAC 59.939 47.826 0.00 0.00 0.00 4.57
429 430 4.486090 CTGTCAACTTCTACGTATGCACT 58.514 43.478 0.00 0.00 0.00 4.40
430 431 5.632244 TGTCAACTTCTACGTATGCACTA 57.368 39.130 0.00 0.00 0.00 2.74
431 432 6.203808 TGTCAACTTCTACGTATGCACTAT 57.796 37.500 0.00 0.00 0.00 2.12
432 433 6.033966 TGTCAACTTCTACGTATGCACTATG 58.966 40.000 0.00 0.00 0.00 2.23
433 434 5.041287 TCAACTTCTACGTATGCACTATGC 58.959 41.667 0.00 0.00 45.29 3.14
512 513 1.610522 ACCAATCTGCACTGAACTTGC 59.389 47.619 0.00 0.00 40.63 4.01
558 559 8.988064 TTCACTACTTCAGAGTGCTTTAATAG 57.012 34.615 0.00 0.00 43.37 1.73
580 581 9.726438 AATAGTTATTGTTCACTAGTTGCTTCT 57.274 29.630 0.00 0.00 0.00 2.85
598 599 4.624882 GCTTCTAGTCAGCATAATCCATCG 59.375 45.833 10.67 0.00 37.22 3.84
676 713 6.209391 AGCAGTGTCTATTGCCTAATTGTTTT 59.791 34.615 0.00 0.00 40.10 2.43
709 747 5.450818 TTTGGGGTGCTGATTAGATAAGT 57.549 39.130 0.00 0.00 0.00 2.24
713 751 4.020128 GGGGTGCTGATTAGATAAGTAGGG 60.020 50.000 0.00 0.00 0.00 3.53
792 830 6.388619 AGGCCAGAAGGAATCTAGTTTTAA 57.611 37.500 5.01 0.00 36.32 1.52
820 858 2.137523 TCGCTAAACGTTTGTCCCTTC 58.862 47.619 23.46 3.86 44.19 3.46
839 877 3.904800 TCCCATGCTAATCTTGACGAA 57.095 42.857 0.00 0.00 0.00 3.85
854 913 2.369870 CGAAGACGTGTACATGGCC 58.630 57.895 17.60 9.19 34.56 5.36
858 917 2.024176 AGACGTGTACATGGCCAATC 57.976 50.000 17.60 5.96 0.00 2.67
885 944 4.081642 TGGCTTTCGTTATTCTAGCTGTCT 60.082 41.667 0.00 0.00 32.58 3.41
888 947 6.128254 GGCTTTCGTTATTCTAGCTGTCTTTT 60.128 38.462 0.00 0.00 32.58 2.27
981 1127 9.265901 ACAGATATGCACTATAAATGTCTGAAC 57.734 33.333 12.97 0.00 40.19 3.18
1018 1164 1.203994 GCATGGTGCTCATTTTCTGCT 59.796 47.619 0.00 0.00 40.96 4.24
1076 1222 4.192317 GAGGGCGTTAGATTTCAGACAAT 58.808 43.478 0.00 0.00 0.00 2.71
1077 1223 3.941483 AGGGCGTTAGATTTCAGACAATG 59.059 43.478 0.00 0.00 0.00 2.82
1112 1258 2.623889 CCGCTGTAGCTGGTATTCTACT 59.376 50.000 0.00 0.00 39.32 2.57
1150 1296 1.067295 ATCTGACAAGAGGTTGCCCA 58.933 50.000 0.00 0.00 37.14 5.36
1163 1309 3.072184 AGGTTGCCCATTTTGCATAAACA 59.928 39.130 0.00 0.00 38.76 2.83
1165 1311 4.320129 GGTTGCCCATTTTGCATAAACAAC 60.320 41.667 14.29 14.29 38.76 3.32
1174 1320 3.637911 TGCATAAACAACCCGGACTAT 57.362 42.857 0.73 0.00 0.00 2.12
1175 1321 3.275143 TGCATAAACAACCCGGACTATG 58.725 45.455 0.73 0.00 0.00 2.23
1236 1385 4.415881 TCAACTTCTTCAGTGGCACTAA 57.584 40.909 21.59 10.12 35.12 2.24
1278 1427 0.966370 AACTCCTTCGAGGCTAGCGT 60.966 55.000 10.22 10.22 40.77 5.07
1308 1457 2.047061 TGGTCAAGTCAAGTACAGCCT 58.953 47.619 0.00 0.00 0.00 4.58
1326 1475 5.045286 ACAGCCTGGAGTCTTATTCAGAATT 60.045 40.000 0.00 0.00 31.28 2.17
1375 1524 5.757850 AAGTCAAAATCAAGAAAGAGCGT 57.242 34.783 0.00 0.00 0.00 5.07
1422 1571 2.650602 GTGTTTGGTGCGTGCGTG 60.651 61.111 0.00 0.00 0.00 5.34
1454 1605 0.104855 TCTCCTGTGTGTGTGCTCAC 59.895 55.000 11.94 11.94 44.08 3.51
1455 1606 0.105593 CTCCTGTGTGTGTGCTCACT 59.894 55.000 18.85 0.00 44.14 3.41
1456 1607 0.541392 TCCTGTGTGTGTGCTCACTT 59.459 50.000 18.85 0.00 44.14 3.16
1457 1608 1.065491 TCCTGTGTGTGTGCTCACTTT 60.065 47.619 18.85 0.00 44.14 2.66
1458 1609 1.064505 CCTGTGTGTGTGCTCACTTTG 59.935 52.381 18.85 5.92 44.14 2.77
1459 1610 1.739466 CTGTGTGTGTGCTCACTTTGT 59.261 47.619 18.85 0.00 44.14 2.83
1460 1611 1.468127 TGTGTGTGTGCTCACTTTGTG 59.532 47.619 18.85 0.00 44.14 3.33
1461 1612 1.093972 TGTGTGTGCTCACTTTGTGG 58.906 50.000 18.85 0.00 44.14 4.17
1462 1613 0.381801 GTGTGTGCTCACTTTGTGGG 59.618 55.000 18.85 0.00 44.14 4.61
1463 1614 0.034574 TGTGTGCTCACTTTGTGGGT 60.035 50.000 18.85 0.00 44.14 4.51
1464 1615 0.381801 GTGTGCTCACTTTGTGGGTG 59.618 55.000 11.58 0.00 40.98 4.61
1465 1616 1.360192 GTGCTCACTTTGTGGGTGC 59.640 57.895 0.00 2.82 36.24 5.01
1466 1617 1.103398 GTGCTCACTTTGTGGGTGCT 61.103 55.000 0.00 0.00 36.24 4.40
1467 1618 0.819259 TGCTCACTTTGTGGGTGCTC 60.819 55.000 0.00 0.00 36.24 4.26
1468 1619 0.819259 GCTCACTTTGTGGGTGCTCA 60.819 55.000 0.00 0.00 36.24 4.26
1469 1620 1.901591 CTCACTTTGTGGGTGCTCAT 58.098 50.000 0.00 0.00 33.87 2.90
1470 1621 1.538512 CTCACTTTGTGGGTGCTCATG 59.461 52.381 0.00 0.00 33.87 3.07
1471 1622 1.133823 TCACTTTGTGGGTGCTCATGT 60.134 47.619 0.00 0.00 33.87 3.21
1549 1727 1.798223 GCATTCGTGTGTGCTCTTGTA 59.202 47.619 0.00 0.00 38.30 2.41
1570 1763 2.637947 TGTGTGTGTGTGTGTTGCTAT 58.362 42.857 0.00 0.00 0.00 2.97
1707 1907 7.917505 CACTCACTTTTCAAAATGTAGAAGCTT 59.082 33.333 0.00 0.00 0.00 3.74
1774 1976 3.733443 AGTTTGCACAAGTTTGGGATC 57.267 42.857 0.00 0.00 31.80 3.36
1782 1984 5.003804 GCACAAGTTTGGGATCTTAGAGAA 58.996 41.667 0.00 0.00 31.80 2.87
1880 2084 1.133181 TCAGGGGCATTCCTCACACA 61.133 55.000 0.00 0.00 34.34 3.72
1969 2181 8.667076 AAGCATAAAAAGCAAGAAGTTCAAAT 57.333 26.923 5.50 0.00 0.00 2.32
2069 2282 1.444836 TTAACGGAGCGGTTCAATGG 58.555 50.000 0.00 0.00 0.00 3.16
2186 2403 5.744666 TCAACGTTTCTGAAAAACCTAGG 57.255 39.130 7.41 7.41 0.00 3.02
2255 2473 5.418840 ACTCGTATTTTCCCGGTACTAAAGA 59.581 40.000 0.00 0.00 0.00 2.52
2256 2474 6.071391 ACTCGTATTTTCCCGGTACTAAAGAA 60.071 38.462 0.00 0.00 0.00 2.52
2257 2475 6.696411 TCGTATTTTCCCGGTACTAAAGAAA 58.304 36.000 0.00 0.00 0.00 2.52
2295 2518 2.489938 ATAAAAAGCCGGAGCAGTCA 57.510 45.000 5.05 0.00 43.56 3.41
2307 2532 6.096846 AGCCGGAGCAGTCAAATAAATATTTT 59.903 34.615 5.05 0.00 43.56 1.82
2308 2533 6.756542 GCCGGAGCAGTCAAATAAATATTTTT 59.243 34.615 5.05 0.00 39.53 1.94
2338 2563 8.783660 AGGATTTCCCCTATTTCTTAAAATCC 57.216 34.615 13.48 13.48 45.59 3.01
2339 2564 7.658261 GGATTTCCCCTATTTCTTAAAATCCG 58.342 38.462 7.87 0.00 40.17 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.576895 GCAAATGGAAGATTCTAAGCAGTC 58.423 41.667 0.00 0.00 0.00 3.51
1 2 4.095483 CGCAAATGGAAGATTCTAAGCAGT 59.905 41.667 0.00 0.00 0.00 4.40
2 3 4.095483 ACGCAAATGGAAGATTCTAAGCAG 59.905 41.667 0.00 0.00 0.00 4.24
3 4 4.009675 ACGCAAATGGAAGATTCTAAGCA 58.990 39.130 0.00 0.00 0.00 3.91
4 5 4.346129 CACGCAAATGGAAGATTCTAAGC 58.654 43.478 0.00 0.00 0.00 3.09
5 6 4.095483 AGCACGCAAATGGAAGATTCTAAG 59.905 41.667 0.00 0.00 0.00 2.18
6 7 4.009675 AGCACGCAAATGGAAGATTCTAA 58.990 39.130 0.00 0.00 0.00 2.10
7 8 3.609853 AGCACGCAAATGGAAGATTCTA 58.390 40.909 0.00 0.00 0.00 2.10
8 9 2.440409 AGCACGCAAATGGAAGATTCT 58.560 42.857 0.00 0.00 0.00 2.40
9 10 2.927553 AGCACGCAAATGGAAGATTC 57.072 45.000 0.00 0.00 0.00 2.52
10 11 2.557924 TGAAGCACGCAAATGGAAGATT 59.442 40.909 0.00 0.00 0.00 2.40
11 12 2.161855 TGAAGCACGCAAATGGAAGAT 58.838 42.857 0.00 0.00 0.00 2.40
12 13 1.603456 TGAAGCACGCAAATGGAAGA 58.397 45.000 0.00 0.00 0.00 2.87
13 14 2.053627 GTTGAAGCACGCAAATGGAAG 58.946 47.619 0.00 0.00 0.00 3.46
14 15 1.680735 AGTTGAAGCACGCAAATGGAA 59.319 42.857 0.00 0.00 0.00 3.53
15 16 1.266718 GAGTTGAAGCACGCAAATGGA 59.733 47.619 0.00 0.00 0.00 3.41
16 17 1.267806 AGAGTTGAAGCACGCAAATGG 59.732 47.619 0.00 0.00 0.00 3.16
17 18 2.313234 CAGAGTTGAAGCACGCAAATG 58.687 47.619 0.00 0.00 0.00 2.32
18 19 1.335324 GCAGAGTTGAAGCACGCAAAT 60.335 47.619 0.00 0.00 0.00 2.32
19 20 0.029300 GCAGAGTTGAAGCACGCAAA 59.971 50.000 0.00 0.00 0.00 3.68
20 21 1.094650 TGCAGAGTTGAAGCACGCAA 61.095 50.000 0.00 0.00 32.55 4.85
21 22 1.094650 TTGCAGAGTTGAAGCACGCA 61.095 50.000 0.00 0.00 38.11 5.24
22 23 0.239347 ATTGCAGAGTTGAAGCACGC 59.761 50.000 0.00 0.00 38.11 5.34
23 24 2.031769 TCAATTGCAGAGTTGAAGCACG 60.032 45.455 0.00 0.00 38.11 5.34
24 25 3.631145 TCAATTGCAGAGTTGAAGCAC 57.369 42.857 0.00 0.00 38.11 4.40
25 26 4.168922 CATCAATTGCAGAGTTGAAGCA 57.831 40.909 13.05 0.00 37.82 3.91
46 47 5.626637 GACTAGTCAGTCGCAGGAGATGC 62.627 56.522 18.20 0.00 44.05 3.91
47 48 2.020720 ACTAGTCAGTCGCAGGAGATG 58.979 52.381 0.00 0.00 0.00 2.90
48 49 2.294074 GACTAGTCAGTCGCAGGAGAT 58.706 52.381 18.20 0.00 41.79 2.75
49 50 1.740297 GACTAGTCAGTCGCAGGAGA 58.260 55.000 18.20 0.00 41.79 3.71
57 58 1.476477 GACCAGGGGACTAGTCAGTC 58.524 60.000 23.91 16.41 46.71 3.51
58 59 3.693810 GACCAGGGGACTAGTCAGT 57.306 57.895 23.91 12.31 46.71 3.41
61 62 0.688087 CAGGGACCAGGGGACTAGTC 60.688 65.000 14.87 14.87 46.76 2.59
62 63 1.392534 CAGGGACCAGGGGACTAGT 59.607 63.158 0.00 0.00 40.21 2.57
63 64 2.066999 GCAGGGACCAGGGGACTAG 61.067 68.421 0.00 0.00 40.21 2.57
64 65 2.040606 GCAGGGACCAGGGGACTA 59.959 66.667 0.00 0.00 40.21 2.59
65 66 3.507143 AAGCAGGGACCAGGGGACT 62.507 63.158 0.00 0.00 46.44 3.85
66 67 2.936032 AAGCAGGGACCAGGGGAC 60.936 66.667 0.00 0.00 0.00 4.46
67 68 2.610859 GAAGCAGGGACCAGGGGA 60.611 66.667 0.00 0.00 0.00 4.81
68 69 1.793820 AAAGAAGCAGGGACCAGGGG 61.794 60.000 0.00 0.00 0.00 4.79
69 70 0.610232 CAAAGAAGCAGGGACCAGGG 60.610 60.000 0.00 0.00 0.00 4.45
70 71 0.610232 CCAAAGAAGCAGGGACCAGG 60.610 60.000 0.00 0.00 0.00 4.45
71 72 0.401738 TCCAAAGAAGCAGGGACCAG 59.598 55.000 0.00 0.00 0.00 4.00
72 73 0.401738 CTCCAAAGAAGCAGGGACCA 59.598 55.000 0.00 0.00 0.00 4.02
73 74 0.693049 TCTCCAAAGAAGCAGGGACC 59.307 55.000 0.00 0.00 0.00 4.46
74 75 2.797177 ATCTCCAAAGAAGCAGGGAC 57.203 50.000 0.00 0.00 34.49 4.46
75 76 4.723789 AGATTATCTCCAAAGAAGCAGGGA 59.276 41.667 0.00 0.00 34.49 4.20
76 77 5.046288 AGATTATCTCCAAAGAAGCAGGG 57.954 43.478 0.00 0.00 34.49 4.45
77 78 6.118170 TGAAGATTATCTCCAAAGAAGCAGG 58.882 40.000 0.00 0.00 34.49 4.85
78 79 7.804843 ATGAAGATTATCTCCAAAGAAGCAG 57.195 36.000 0.00 0.00 34.49 4.24
98 99 9.787532 GCATAGCTTTCACAAAACTTATATGAA 57.212 29.630 0.00 0.00 0.00 2.57
99 100 9.177608 AGCATAGCTTTCACAAAACTTATATGA 57.822 29.630 0.00 0.00 33.89 2.15
100 101 9.443283 GAGCATAGCTTTCACAAAACTTATATG 57.557 33.333 0.00 0.00 39.88 1.78
101 102 9.401058 AGAGCATAGCTTTCACAAAACTTATAT 57.599 29.630 0.00 0.00 39.88 0.86
102 103 8.792830 AGAGCATAGCTTTCACAAAACTTATA 57.207 30.769 0.00 0.00 39.88 0.98
103 104 7.693969 AGAGCATAGCTTTCACAAAACTTAT 57.306 32.000 0.00 0.00 39.88 1.73
104 105 7.362662 CAAGAGCATAGCTTTCACAAAACTTA 58.637 34.615 0.00 0.00 39.88 2.24
105 106 6.211515 CAAGAGCATAGCTTTCACAAAACTT 58.788 36.000 0.00 0.00 39.88 2.66
106 107 5.278660 CCAAGAGCATAGCTTTCACAAAACT 60.279 40.000 0.00 0.00 39.88 2.66
107 108 4.919754 CCAAGAGCATAGCTTTCACAAAAC 59.080 41.667 0.00 0.00 39.88 2.43
108 109 4.826733 TCCAAGAGCATAGCTTTCACAAAA 59.173 37.500 0.00 0.00 39.88 2.44
109 110 4.397420 TCCAAGAGCATAGCTTTCACAAA 58.603 39.130 0.00 0.00 39.88 2.83
110 111 4.019792 TCCAAGAGCATAGCTTTCACAA 57.980 40.909 0.00 0.00 39.88 3.33
111 112 3.701205 TCCAAGAGCATAGCTTTCACA 57.299 42.857 0.00 0.00 39.88 3.58
112 113 4.272991 CAGATCCAAGAGCATAGCTTTCAC 59.727 45.833 0.00 0.00 39.88 3.18
113 114 4.080695 ACAGATCCAAGAGCATAGCTTTCA 60.081 41.667 0.00 0.00 39.88 2.69
114 115 4.450053 ACAGATCCAAGAGCATAGCTTTC 58.550 43.478 0.00 0.00 39.88 2.62
115 116 4.500499 ACAGATCCAAGAGCATAGCTTT 57.500 40.909 0.00 0.00 39.88 3.51
116 117 4.406972 TGTACAGATCCAAGAGCATAGCTT 59.593 41.667 0.00 0.00 39.88 3.74
117 118 3.963374 TGTACAGATCCAAGAGCATAGCT 59.037 43.478 0.00 0.00 43.88 3.32
118 119 4.054671 GTGTACAGATCCAAGAGCATAGC 58.945 47.826 0.00 0.00 0.00 2.97
119 120 5.268118 TGTGTACAGATCCAAGAGCATAG 57.732 43.478 0.00 0.00 0.00 2.23
120 121 5.675684 TTGTGTACAGATCCAAGAGCATA 57.324 39.130 0.00 0.00 0.00 3.14
121 122 4.558226 TTGTGTACAGATCCAAGAGCAT 57.442 40.909 0.00 0.00 0.00 3.79
122 123 4.350368 TTTGTGTACAGATCCAAGAGCA 57.650 40.909 0.00 0.00 0.00 4.26
123 124 4.697352 ACATTTGTGTACAGATCCAAGAGC 59.303 41.667 0.00 0.00 0.00 4.09
124 125 9.035607 GTATACATTTGTGTACAGATCCAAGAG 57.964 37.037 11.36 0.00 40.77 2.85
125 126 8.758829 AGTATACATTTGTGTACAGATCCAAGA 58.241 33.333 16.63 0.00 42.66 3.02
126 127 8.948631 AGTATACATTTGTGTACAGATCCAAG 57.051 34.615 16.63 0.00 42.66 3.61
132 133 9.454585 GCGTAATAGTATACATTTGTGTACAGA 57.545 33.333 16.63 0.00 42.66 3.41
133 134 9.459640 AGCGTAATAGTATACATTTGTGTACAG 57.540 33.333 16.63 0.00 42.66 2.74
134 135 9.240159 CAGCGTAATAGTATACATTTGTGTACA 57.760 33.333 16.63 0.00 42.66 2.90
135 136 8.212495 GCAGCGTAATAGTATACATTTGTGTAC 58.788 37.037 5.50 8.95 41.20 2.90
136 137 8.139350 AGCAGCGTAATAGTATACATTTGTGTA 58.861 33.333 5.50 0.00 0.00 2.90
137 138 6.984474 AGCAGCGTAATAGTATACATTTGTGT 59.016 34.615 5.50 0.00 0.00 3.72
138 139 7.283633 CAGCAGCGTAATAGTATACATTTGTG 58.716 38.462 5.50 0.00 0.00 3.33
139 140 6.073765 GCAGCAGCGTAATAGTATACATTTGT 60.074 38.462 5.50 0.00 0.00 2.83
140 141 6.299604 GCAGCAGCGTAATAGTATACATTTG 58.700 40.000 5.50 0.80 0.00 2.32
141 142 6.467723 GCAGCAGCGTAATAGTATACATTT 57.532 37.500 5.50 0.82 0.00 2.32
157 158 2.251409 TATCATTGAGGAGCAGCAGC 57.749 50.000 0.00 0.00 42.56 5.25
158 159 5.996513 AGTTAATATCATTGAGGAGCAGCAG 59.003 40.000 0.00 0.00 0.00 4.24
159 160 5.933617 AGTTAATATCATTGAGGAGCAGCA 58.066 37.500 0.00 0.00 0.00 4.41
160 161 6.874288 AAGTTAATATCATTGAGGAGCAGC 57.126 37.500 0.00 0.00 0.00 5.25
161 162 7.389053 GGGTAAGTTAATATCATTGAGGAGCAG 59.611 40.741 0.00 0.00 0.00 4.24
162 163 7.147391 TGGGTAAGTTAATATCATTGAGGAGCA 60.147 37.037 0.00 0.00 0.00 4.26
163 164 7.224297 TGGGTAAGTTAATATCATTGAGGAGC 58.776 38.462 0.00 0.00 0.00 4.70
164 165 8.651389 TCTGGGTAAGTTAATATCATTGAGGAG 58.349 37.037 0.00 0.00 0.00 3.69
165 166 8.429641 GTCTGGGTAAGTTAATATCATTGAGGA 58.570 37.037 0.00 0.00 0.00 3.71
166 167 8.432805 AGTCTGGGTAAGTTAATATCATTGAGG 58.567 37.037 0.00 0.00 0.00 3.86
167 168 9.482627 GAGTCTGGGTAAGTTAATATCATTGAG 57.517 37.037 0.00 0.00 0.00 3.02
168 169 8.429641 GGAGTCTGGGTAAGTTAATATCATTGA 58.570 37.037 0.00 0.00 0.00 2.57
169 170 7.661847 GGGAGTCTGGGTAAGTTAATATCATTG 59.338 40.741 0.00 0.00 0.00 2.82
170 171 7.349859 TGGGAGTCTGGGTAAGTTAATATCATT 59.650 37.037 0.00 0.00 0.00 2.57
171 172 6.849697 TGGGAGTCTGGGTAAGTTAATATCAT 59.150 38.462 0.00 0.00 0.00 2.45
172 173 6.206787 TGGGAGTCTGGGTAAGTTAATATCA 58.793 40.000 0.00 0.00 0.00 2.15
173 174 6.742559 TGGGAGTCTGGGTAAGTTAATATC 57.257 41.667 0.00 0.00 0.00 1.63
174 175 7.519347 TTTGGGAGTCTGGGTAAGTTAATAT 57.481 36.000 0.00 0.00 0.00 1.28
175 176 6.956102 TTTGGGAGTCTGGGTAAGTTAATA 57.044 37.500 0.00 0.00 0.00 0.98
176 177 5.853572 TTTGGGAGTCTGGGTAAGTTAAT 57.146 39.130 0.00 0.00 0.00 1.40
177 178 5.311121 TGATTTGGGAGTCTGGGTAAGTTAA 59.689 40.000 0.00 0.00 0.00 2.01
178 179 4.847512 TGATTTGGGAGTCTGGGTAAGTTA 59.152 41.667 0.00 0.00 0.00 2.24
179 180 3.655777 TGATTTGGGAGTCTGGGTAAGTT 59.344 43.478 0.00 0.00 0.00 2.66
180 181 3.009143 GTGATTTGGGAGTCTGGGTAAGT 59.991 47.826 0.00 0.00 0.00 2.24
181 182 3.009033 TGTGATTTGGGAGTCTGGGTAAG 59.991 47.826 0.00 0.00 0.00 2.34
182 183 2.983192 TGTGATTTGGGAGTCTGGGTAA 59.017 45.455 0.00 0.00 0.00 2.85
183 184 2.626785 TGTGATTTGGGAGTCTGGGTA 58.373 47.619 0.00 0.00 0.00 3.69
184 185 1.444933 TGTGATTTGGGAGTCTGGGT 58.555 50.000 0.00 0.00 0.00 4.51
185 186 2.584835 TTGTGATTTGGGAGTCTGGG 57.415 50.000 0.00 0.00 0.00 4.45
186 187 3.754965 TCTTTGTGATTTGGGAGTCTGG 58.245 45.455 0.00 0.00 0.00 3.86
187 188 5.766222 CTTTCTTTGTGATTTGGGAGTCTG 58.234 41.667 0.00 0.00 0.00 3.51
188 189 4.279420 GCTTTCTTTGTGATTTGGGAGTCT 59.721 41.667 0.00 0.00 0.00 3.24
189 190 4.037923 TGCTTTCTTTGTGATTTGGGAGTC 59.962 41.667 0.00 0.00 0.00 3.36
190 191 3.960102 TGCTTTCTTTGTGATTTGGGAGT 59.040 39.130 0.00 0.00 0.00 3.85
191 192 4.279169 TCTGCTTTCTTTGTGATTTGGGAG 59.721 41.667 0.00 0.00 0.00 4.30
192 193 4.214310 TCTGCTTTCTTTGTGATTTGGGA 58.786 39.130 0.00 0.00 0.00 4.37
193 194 4.589216 TCTGCTTTCTTTGTGATTTGGG 57.411 40.909 0.00 0.00 0.00 4.12
194 195 5.594926 ACTTCTGCTTTCTTTGTGATTTGG 58.405 37.500 0.00 0.00 0.00 3.28
195 196 6.075205 CGAACTTCTGCTTTCTTTGTGATTTG 60.075 38.462 0.00 0.00 0.00 2.32
196 197 5.973565 CGAACTTCTGCTTTCTTTGTGATTT 59.026 36.000 0.00 0.00 0.00 2.17
197 198 5.506317 CCGAACTTCTGCTTTCTTTGTGATT 60.506 40.000 0.00 0.00 0.00 2.57
198 199 4.023707 CCGAACTTCTGCTTTCTTTGTGAT 60.024 41.667 0.00 0.00 0.00 3.06
199 200 3.312421 CCGAACTTCTGCTTTCTTTGTGA 59.688 43.478 0.00 0.00 0.00 3.58
200 201 3.548818 CCCGAACTTCTGCTTTCTTTGTG 60.549 47.826 0.00 0.00 0.00 3.33
201 202 2.618709 CCCGAACTTCTGCTTTCTTTGT 59.381 45.455 0.00 0.00 0.00 2.83
202 203 2.618709 ACCCGAACTTCTGCTTTCTTTG 59.381 45.455 0.00 0.00 0.00 2.77
203 204 2.932261 ACCCGAACTTCTGCTTTCTTT 58.068 42.857 0.00 0.00 0.00 2.52
204 205 2.640316 ACCCGAACTTCTGCTTTCTT 57.360 45.000 0.00 0.00 0.00 2.52
205 206 2.104963 AGAACCCGAACTTCTGCTTTCT 59.895 45.455 0.00 0.00 0.00 2.52
206 207 2.495084 AGAACCCGAACTTCTGCTTTC 58.505 47.619 0.00 0.00 0.00 2.62
207 208 2.640316 AGAACCCGAACTTCTGCTTT 57.360 45.000 0.00 0.00 0.00 3.51
208 209 3.676324 CGATAGAACCCGAACTTCTGCTT 60.676 47.826 0.00 0.00 39.76 3.91
209 210 2.159226 CGATAGAACCCGAACTTCTGCT 60.159 50.000 0.00 0.00 39.76 4.24
210 211 2.159282 TCGATAGAACCCGAACTTCTGC 60.159 50.000 0.00 0.00 46.15 4.26
211 212 3.777465 TCGATAGAACCCGAACTTCTG 57.223 47.619 0.00 0.00 46.15 3.02
225 226 5.493133 ACTCTGAACTTGTAGCTCGATAG 57.507 43.478 0.00 0.00 0.00 2.08
226 227 5.899120 AACTCTGAACTTGTAGCTCGATA 57.101 39.130 0.00 0.00 0.00 2.92
227 228 4.792521 AACTCTGAACTTGTAGCTCGAT 57.207 40.909 0.00 0.00 0.00 3.59
228 229 4.278669 AGAAACTCTGAACTTGTAGCTCGA 59.721 41.667 0.00 0.00 0.00 4.04
229 230 4.551388 AGAAACTCTGAACTTGTAGCTCG 58.449 43.478 0.00 0.00 0.00 5.03
230 231 4.926832 GGAGAAACTCTGAACTTGTAGCTC 59.073 45.833 0.00 0.00 0.00 4.09
231 232 4.262678 GGGAGAAACTCTGAACTTGTAGCT 60.263 45.833 0.00 0.00 0.00 3.32
232 233 3.997681 GGGAGAAACTCTGAACTTGTAGC 59.002 47.826 0.00 0.00 0.00 3.58
233 234 5.476091 AGGGAGAAACTCTGAACTTGTAG 57.524 43.478 0.00 0.00 0.00 2.74
234 235 5.602978 AGAAGGGAGAAACTCTGAACTTGTA 59.397 40.000 0.00 0.00 0.00 2.41
235 236 4.410555 AGAAGGGAGAAACTCTGAACTTGT 59.589 41.667 0.00 0.00 0.00 3.16
236 237 4.967036 AGAAGGGAGAAACTCTGAACTTG 58.033 43.478 0.00 0.00 0.00 3.16
237 238 4.904853 AGAGAAGGGAGAAACTCTGAACTT 59.095 41.667 0.00 0.00 38.14 2.66
238 239 4.488770 AGAGAAGGGAGAAACTCTGAACT 58.511 43.478 0.00 0.00 38.14 3.01
239 240 4.882842 AGAGAAGGGAGAAACTCTGAAC 57.117 45.455 0.00 0.00 38.14 3.18
243 244 7.747809 ATTATTCAGAGAAGGGAGAAACTCT 57.252 36.000 0.00 0.00 39.82 3.24
244 245 8.043710 TGAATTATTCAGAGAAGGGAGAAACTC 58.956 37.037 3.20 0.00 34.08 3.01
245 246 7.922382 TGAATTATTCAGAGAAGGGAGAAACT 58.078 34.615 3.20 0.00 34.08 2.66
260 261 6.405065 GCAGGTGCAGAAATCTGAATTATTCA 60.405 38.462 14.43 7.46 46.59 2.57
261 262 5.975939 GCAGGTGCAGAAATCTGAATTATTC 59.024 40.000 14.43 0.00 46.59 1.75
262 263 5.899299 GCAGGTGCAGAAATCTGAATTATT 58.101 37.500 14.43 0.00 46.59 1.40
263 264 5.511234 GCAGGTGCAGAAATCTGAATTAT 57.489 39.130 14.43 0.00 46.59 1.28
264 265 4.970662 GCAGGTGCAGAAATCTGAATTA 57.029 40.909 14.43 0.00 46.59 1.40
265 266 3.863142 GCAGGTGCAGAAATCTGAATT 57.137 42.857 14.43 0.00 46.59 2.17
278 279 0.652592 CTACACGCTTATGCAGGTGC 59.347 55.000 8.05 0.00 39.64 5.01
279 280 2.010145 ACTACACGCTTATGCAGGTG 57.990 50.000 0.00 4.55 39.64 4.00
280 281 3.880047 TTACTACACGCTTATGCAGGT 57.120 42.857 0.00 0.98 39.64 4.00
281 282 5.277345 GGAAATTACTACACGCTTATGCAGG 60.277 44.000 0.00 0.00 39.64 4.85
282 283 5.277345 GGGAAATTACTACACGCTTATGCAG 60.277 44.000 0.00 0.00 39.64 4.41
283 284 4.573201 GGGAAATTACTACACGCTTATGCA 59.427 41.667 1.16 0.00 39.64 3.96
284 285 4.814771 AGGGAAATTACTACACGCTTATGC 59.185 41.667 0.00 0.00 0.00 3.14
285 286 6.920569 AAGGGAAATTACTACACGCTTATG 57.079 37.500 0.00 0.00 33.37 1.90
286 287 9.702494 GTATAAGGGAAATTACTACACGCTTAT 57.298 33.333 2.85 2.85 43.57 1.73
287 288 8.694540 TGTATAAGGGAAATTACTACACGCTTA 58.305 33.333 0.00 0.00 39.15 3.09
288 289 7.558604 TGTATAAGGGAAATTACTACACGCTT 58.441 34.615 0.00 0.00 37.47 4.68
289 290 7.116075 TGTATAAGGGAAATTACTACACGCT 57.884 36.000 0.00 0.00 0.00 5.07
290 291 7.493645 ACTTGTATAAGGGAAATTACTACACGC 59.506 37.037 4.12 0.00 38.26 5.34
291 292 8.937634 ACTTGTATAAGGGAAATTACTACACG 57.062 34.615 4.12 0.00 38.26 4.49
296 297 9.760077 CGTCATACTTGTATAAGGGAAATTACT 57.240 33.333 4.12 0.00 38.26 2.24
297 298 9.538508 ACGTCATACTTGTATAAGGGAAATTAC 57.461 33.333 4.12 0.00 38.26 1.89
298 299 9.754382 GACGTCATACTTGTATAAGGGAAATTA 57.246 33.333 11.55 0.00 38.26 1.40
299 300 8.483758 AGACGTCATACTTGTATAAGGGAAATT 58.516 33.333 19.50 0.00 38.26 1.82
300 301 8.019656 AGACGTCATACTTGTATAAGGGAAAT 57.980 34.615 19.50 0.00 38.26 2.17
301 302 7.414222 AGACGTCATACTTGTATAAGGGAAA 57.586 36.000 19.50 0.00 38.26 3.13
302 303 7.776969 ACTAGACGTCATACTTGTATAAGGGAA 59.223 37.037 19.50 0.00 38.26 3.97
303 304 7.285566 ACTAGACGTCATACTTGTATAAGGGA 58.714 38.462 19.50 0.00 38.26 4.20
304 305 7.507733 ACTAGACGTCATACTTGTATAAGGG 57.492 40.000 19.50 0.00 38.26 3.95
305 306 8.618677 TGAACTAGACGTCATACTTGTATAAGG 58.381 37.037 19.50 0.00 38.26 2.69
306 307 9.653067 CTGAACTAGACGTCATACTTGTATAAG 57.347 37.037 19.50 0.00 39.86 1.73
307 308 9.170734 ACTGAACTAGACGTCATACTTGTATAA 57.829 33.333 19.50 0.00 0.00 0.98
308 309 8.728337 ACTGAACTAGACGTCATACTTGTATA 57.272 34.615 19.50 0.00 0.00 1.47
309 310 7.627298 ACTGAACTAGACGTCATACTTGTAT 57.373 36.000 19.50 0.00 0.00 2.29
310 311 7.303261 CAACTGAACTAGACGTCATACTTGTA 58.697 38.462 19.50 0.00 0.00 2.41
311 312 5.961396 ACTGAACTAGACGTCATACTTGT 57.039 39.130 19.50 5.34 0.00 3.16
312 313 5.061064 GCAACTGAACTAGACGTCATACTTG 59.939 44.000 19.50 8.53 0.00 3.16
313 314 5.162075 GCAACTGAACTAGACGTCATACTT 58.838 41.667 19.50 2.87 0.00 2.24
314 315 4.217767 TGCAACTGAACTAGACGTCATACT 59.782 41.667 19.50 0.00 0.00 2.12
315 316 4.482386 TGCAACTGAACTAGACGTCATAC 58.518 43.478 19.50 4.93 0.00 2.39
316 317 4.776795 TGCAACTGAACTAGACGTCATA 57.223 40.909 19.50 6.45 0.00 2.15
317 318 3.660501 TGCAACTGAACTAGACGTCAT 57.339 42.857 19.50 5.54 0.00 3.06
318 319 3.446310 TTGCAACTGAACTAGACGTCA 57.554 42.857 19.50 2.84 0.00 4.35
319 320 4.033587 TGTTTTGCAACTGAACTAGACGTC 59.966 41.667 7.70 7.70 33.58 4.34
320 321 3.936453 TGTTTTGCAACTGAACTAGACGT 59.064 39.130 12.41 0.00 33.58 4.34
321 322 4.271687 GTGTTTTGCAACTGAACTAGACG 58.728 43.478 12.41 0.00 33.58 4.18
322 323 4.095782 TGGTGTTTTGCAACTGAACTAGAC 59.904 41.667 12.41 4.23 35.37 2.59
323 324 4.265893 TGGTGTTTTGCAACTGAACTAGA 58.734 39.130 12.41 0.00 35.37 2.43
324 325 4.630894 TGGTGTTTTGCAACTGAACTAG 57.369 40.909 12.41 0.00 35.37 2.57
325 326 4.887071 AGATGGTGTTTTGCAACTGAACTA 59.113 37.500 12.41 2.56 35.37 2.24
326 327 3.701040 AGATGGTGTTTTGCAACTGAACT 59.299 39.130 12.41 0.00 35.37 3.01
327 328 4.045636 AGATGGTGTTTTGCAACTGAAC 57.954 40.909 0.00 1.55 35.37 3.18
328 329 4.734398 AAGATGGTGTTTTGCAACTGAA 57.266 36.364 0.00 0.00 35.37 3.02
329 330 4.734398 AAAGATGGTGTTTTGCAACTGA 57.266 36.364 0.00 0.00 35.37 3.41
330 331 5.799681 AAAAAGATGGTGTTTTGCAACTG 57.200 34.783 0.00 0.00 35.37 3.16
350 351 7.358517 GCAGAAGTACGACAACAAAAACAAAAA 60.359 33.333 0.00 0.00 0.00 1.94
351 352 6.088350 GCAGAAGTACGACAACAAAAACAAAA 59.912 34.615 0.00 0.00 0.00 2.44
352 353 5.569823 GCAGAAGTACGACAACAAAAACAAA 59.430 36.000 0.00 0.00 0.00 2.83
353 354 5.090083 GCAGAAGTACGACAACAAAAACAA 58.910 37.500 0.00 0.00 0.00 2.83
354 355 4.393680 AGCAGAAGTACGACAACAAAAACA 59.606 37.500 0.00 0.00 0.00 2.83
355 356 4.905269 AGCAGAAGTACGACAACAAAAAC 58.095 39.130 0.00 0.00 0.00 2.43
356 357 5.813672 AGTAGCAGAAGTACGACAACAAAAA 59.186 36.000 0.00 0.00 0.00 1.94
357 358 5.353938 AGTAGCAGAAGTACGACAACAAAA 58.646 37.500 0.00 0.00 0.00 2.44
358 359 4.940463 AGTAGCAGAAGTACGACAACAAA 58.060 39.130 0.00 0.00 0.00 2.83
359 360 4.579454 AGTAGCAGAAGTACGACAACAA 57.421 40.909 0.00 0.00 0.00 2.83
360 361 4.037089 TCAAGTAGCAGAAGTACGACAACA 59.963 41.667 0.00 0.00 0.00 3.33
361 362 4.543692 TCAAGTAGCAGAAGTACGACAAC 58.456 43.478 0.00 0.00 0.00 3.32
362 363 4.517832 TCTCAAGTAGCAGAAGTACGACAA 59.482 41.667 0.00 0.00 0.00 3.18
363 364 4.070009 TCTCAAGTAGCAGAAGTACGACA 58.930 43.478 0.00 0.00 0.00 4.35
364 365 4.392445 TCTCTCAAGTAGCAGAAGTACGAC 59.608 45.833 0.00 0.00 0.00 4.34
365 366 4.576879 TCTCTCAAGTAGCAGAAGTACGA 58.423 43.478 0.00 0.00 0.00 3.43
366 367 4.948608 TCTCTCAAGTAGCAGAAGTACG 57.051 45.455 0.00 0.00 0.00 3.67
367 368 5.358442 TCCATCTCTCAAGTAGCAGAAGTAC 59.642 44.000 0.00 0.00 0.00 2.73
368 369 5.510430 TCCATCTCTCAAGTAGCAGAAGTA 58.490 41.667 0.00 0.00 0.00 2.24
369 370 4.348486 TCCATCTCTCAAGTAGCAGAAGT 58.652 43.478 0.00 0.00 0.00 3.01
370 371 4.998671 TCCATCTCTCAAGTAGCAGAAG 57.001 45.455 0.00 0.00 0.00 2.85
371 372 5.303078 GGTATCCATCTCTCAAGTAGCAGAA 59.697 44.000 0.00 0.00 0.00 3.02
372 373 4.830046 GGTATCCATCTCTCAAGTAGCAGA 59.170 45.833 0.00 0.00 0.00 4.26
373 374 4.586421 TGGTATCCATCTCTCAAGTAGCAG 59.414 45.833 0.00 0.00 0.00 4.24
374 375 4.342378 GTGGTATCCATCTCTCAAGTAGCA 59.658 45.833 0.00 0.00 35.28 3.49
375 376 4.586841 AGTGGTATCCATCTCTCAAGTAGC 59.413 45.833 0.00 0.00 35.28 3.58
376 377 7.040062 CCTTAGTGGTATCCATCTCTCAAGTAG 60.040 44.444 0.00 0.00 35.28 2.57
377 378 6.778069 CCTTAGTGGTATCCATCTCTCAAGTA 59.222 42.308 0.00 0.00 35.28 2.24
378 379 5.600484 CCTTAGTGGTATCCATCTCTCAAGT 59.400 44.000 0.00 0.00 35.28 3.16
379 380 6.095432 CCTTAGTGGTATCCATCTCTCAAG 57.905 45.833 0.00 0.00 35.28 3.02
394 395 4.273148 AGTTGACAGCTTACCTTAGTGG 57.727 45.455 0.00 0.00 42.93 4.00
395 396 5.542779 AGAAGTTGACAGCTTACCTTAGTG 58.457 41.667 4.36 0.00 0.00 2.74
396 397 5.810080 AGAAGTTGACAGCTTACCTTAGT 57.190 39.130 4.36 0.00 0.00 2.24
397 398 5.800941 CGTAGAAGTTGACAGCTTACCTTAG 59.199 44.000 4.36 0.00 0.00 2.18
398 399 5.242393 ACGTAGAAGTTGACAGCTTACCTTA 59.758 40.000 4.36 0.00 0.00 2.69
399 400 4.038883 ACGTAGAAGTTGACAGCTTACCTT 59.961 41.667 4.36 0.00 0.00 3.50
400 401 3.573110 ACGTAGAAGTTGACAGCTTACCT 59.427 43.478 4.36 1.94 0.00 3.08
401 402 3.910648 ACGTAGAAGTTGACAGCTTACC 58.089 45.455 4.36 0.00 0.00 2.85
402 403 5.004535 GCATACGTAGAAGTTGACAGCTTAC 59.995 44.000 4.36 0.12 0.00 2.34
403 404 5.100259 GCATACGTAGAAGTTGACAGCTTA 58.900 41.667 4.36 0.00 0.00 3.09
404 405 3.927142 GCATACGTAGAAGTTGACAGCTT 59.073 43.478 3.98 3.98 0.00 3.74
405 406 3.056821 TGCATACGTAGAAGTTGACAGCT 60.057 43.478 0.08 0.00 0.00 4.24
406 407 3.060895 GTGCATACGTAGAAGTTGACAGC 59.939 47.826 0.08 0.00 0.00 4.40
407 408 4.486090 AGTGCATACGTAGAAGTTGACAG 58.514 43.478 0.08 0.00 0.00 3.51
408 409 4.514781 AGTGCATACGTAGAAGTTGACA 57.485 40.909 0.08 0.00 0.00 3.58
409 410 5.051641 GCATAGTGCATACGTAGAAGTTGAC 60.052 44.000 0.08 0.00 44.26 3.18
410 411 5.041287 GCATAGTGCATACGTAGAAGTTGA 58.959 41.667 0.08 0.00 44.26 3.18
411 412 5.316488 GCATAGTGCATACGTAGAAGTTG 57.684 43.478 0.08 0.00 44.26 3.16
433 434 5.473504 ACCTGTGAGCAATAAGGTTTTAGTG 59.526 40.000 0.00 0.00 40.14 2.74
434 435 5.473504 CACCTGTGAGCAATAAGGTTTTAGT 59.526 40.000 0.00 0.00 41.14 2.24
435 436 5.619981 GCACCTGTGAGCAATAAGGTTTTAG 60.620 44.000 0.51 0.00 41.14 1.85
436 437 4.217550 GCACCTGTGAGCAATAAGGTTTTA 59.782 41.667 0.51 0.00 41.14 1.52
437 438 3.005791 GCACCTGTGAGCAATAAGGTTTT 59.994 43.478 0.51 0.00 41.14 2.43
438 439 2.558359 GCACCTGTGAGCAATAAGGTTT 59.442 45.455 0.51 0.00 41.14 3.27
439 440 2.162681 GCACCTGTGAGCAATAAGGTT 58.837 47.619 0.51 0.00 41.14 3.50
440 441 1.073763 TGCACCTGTGAGCAATAAGGT 59.926 47.619 0.51 0.00 43.92 3.50
441 442 1.470098 GTGCACCTGTGAGCAATAAGG 59.530 52.381 5.22 0.00 43.20 2.69
512 513 8.576442 AGTGAAATTAAATACACAAGACAAGGG 58.424 33.333 0.00 0.00 35.97 3.95
580 581 3.506398 TCCCGATGGATTATGCTGACTA 58.494 45.455 0.00 0.00 35.03 2.59
615 617 8.998558 ACTTTGCTAACGTCATTTAGTAAAAC 57.001 30.769 8.81 0.00 40.74 2.43
676 713 4.534500 TCAGCACCCCAAAAGTTAGATCTA 59.466 41.667 0.00 0.00 0.00 1.98
691 728 4.838986 TCCCTACTTATCTAATCAGCACCC 59.161 45.833 0.00 0.00 0.00 4.61
709 747 0.031716 AGCAGCAGACCTCATCCCTA 60.032 55.000 0.00 0.00 0.00 3.53
713 751 6.484643 TCATTAAAATAGCAGCAGACCTCATC 59.515 38.462 0.00 0.00 0.00 2.92
792 830 5.333568 GGACAAACGTTTAGCGAAACACTAT 60.334 40.000 20.26 3.64 44.46 2.12
802 840 1.538512 GGGAAGGGACAAACGTTTAGC 59.461 52.381 14.20 8.41 0.00 3.09
820 858 3.557595 GTCTTCGTCAAGATTAGCATGGG 59.442 47.826 0.00 0.00 40.88 4.00
839 877 1.739035 CGATTGGCCATGTACACGTCT 60.739 52.381 6.09 0.00 0.00 4.18
854 913 2.892373 TAACGAAAGCCAAGCGATTG 57.108 45.000 6.39 6.39 0.00 2.67
858 917 3.544244 GCTAGAATAACGAAAGCCAAGCG 60.544 47.826 0.00 0.00 0.00 4.68
905 964 6.204688 GTCAAAACACATGACATCTAACAGGA 59.795 38.462 0.00 0.00 45.13 3.86
970 1116 6.885918 TGTCATGGTGATATGTTCAGACATTT 59.114 34.615 0.00 0.00 43.92 2.32
1018 1164 3.572255 GCAATCACCTGAGGTAAAACCAA 59.428 43.478 2.59 0.00 41.95 3.67
1050 1196 2.168521 CTGAAATCTAACGCCCTCCTCA 59.831 50.000 0.00 0.00 0.00 3.86
1076 1222 2.668212 CGGCGCTTCCCAGAAACA 60.668 61.111 7.64 0.00 0.00 2.83
1077 1223 4.103103 GCGGCGCTTCCCAGAAAC 62.103 66.667 26.86 0.00 0.00 2.78
1112 1258 9.708092 TGTCAGATAATTGCAAAATTGATTCAA 57.292 25.926 1.71 0.75 0.00 2.69
1150 1296 3.576550 AGTCCGGGTTGTTTATGCAAAAT 59.423 39.130 0.00 0.00 0.00 1.82
1163 1309 4.261280 CGTTTTCAAAACATAGTCCGGGTT 60.261 41.667 13.42 0.00 0.00 4.11
1165 1311 3.365565 CCGTTTTCAAAACATAGTCCGGG 60.366 47.826 13.42 0.00 0.00 5.73
1174 1320 3.914312 TCAGCAAACCGTTTTCAAAACA 58.086 36.364 13.42 0.00 0.00 2.83
1175 1321 4.781883 GCATCAGCAAACCGTTTTCAAAAC 60.782 41.667 2.61 2.61 41.58 2.43
1236 1385 0.038159 CCGAAGAGCCTCTTGAACGT 60.038 55.000 12.63 0.00 36.73 3.99
1278 1427 3.490439 TGACTTGACCAAGAGCATCAA 57.510 42.857 15.84 0.00 40.79 2.57
1308 1457 9.877178 GAACTTCTAATTCTGAATAAGACTCCA 57.123 33.333 14.97 0.00 33.46 3.86
1326 1475 8.210946 TCATGGAACTCTTCTTTTGAACTTCTA 58.789 33.333 0.00 0.00 34.31 2.10
1422 1571 0.459237 CAGGAGACATCACAGTCCGC 60.459 60.000 0.00 0.00 39.34 5.54
1454 1605 1.321474 ACACATGAGCACCCACAAAG 58.679 50.000 0.00 0.00 0.00 2.77
1455 1606 1.774110 AACACATGAGCACCCACAAA 58.226 45.000 0.00 0.00 0.00 2.83
1456 1607 1.408340 CAAACACATGAGCACCCACAA 59.592 47.619 0.00 0.00 0.00 3.33
1457 1608 1.031235 CAAACACATGAGCACCCACA 58.969 50.000 0.00 0.00 0.00 4.17
1458 1609 0.318955 GCAAACACATGAGCACCCAC 60.319 55.000 0.00 0.00 0.00 4.61
1459 1610 0.754587 TGCAAACACATGAGCACCCA 60.755 50.000 0.00 0.00 31.05 4.51
1460 1611 0.604578 ATGCAAACACATGAGCACCC 59.395 50.000 0.00 0.00 40.14 4.61
1468 1619 3.119209 TCACAACACACATGCAAACACAT 60.119 39.130 0.00 0.00 0.00 3.21
1469 1620 2.229784 TCACAACACACATGCAAACACA 59.770 40.909 0.00 0.00 0.00 3.72
1470 1621 2.853594 CTCACAACACACATGCAAACAC 59.146 45.455 0.00 0.00 0.00 3.32
1471 1622 2.734809 GCTCACAACACACATGCAAACA 60.735 45.455 0.00 0.00 0.00 2.83
1549 1727 1.462616 AGCAACACACACACACACAT 58.537 45.000 0.00 0.00 0.00 3.21
1570 1763 0.177836 CACACACACACTGGAGGACA 59.822 55.000 0.00 0.00 0.00 4.02
1761 1963 9.807921 TTTTATTCTCTAAGATCCCAAACTTGT 57.192 29.630 0.00 0.00 0.00 3.16
2069 2282 9.590088 CGGTTACAAATCTGAGTTTTTAGTAAC 57.410 33.333 15.00 15.00 38.51 2.50
2223 2440 6.175471 ACCGGGAAAATACGAGTTTTTCTAT 58.825 36.000 6.32 4.00 40.98 1.98
2267 2490 5.241949 TGCTCCGGCTTTTTATTTGAACTTA 59.758 36.000 0.00 0.00 39.59 2.24
2320 2545 7.054751 ACTTCTCGGATTTTAAGAAATAGGGG 58.945 38.462 0.00 0.00 35.65 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.