Multiple sequence alignment - TraesCS6A01G224800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G224800 chr6A 100.000 4603 0 0 1 4603 421775886 421771284 0.000000e+00 8501.0
1 TraesCS6A01G224800 chr6A 87.671 73 7 2 1419 1490 211932454 211932525 2.950000e-12 84.2
2 TraesCS6A01G224800 chr6D 94.963 2541 96 16 1486 4011 296203090 296200567 0.000000e+00 3954.0
3 TraesCS6A01G224800 chr6D 94.146 632 16 5 799 1422 296204031 296203413 0.000000e+00 942.0
4 TraesCS6A01G224800 chr6D 97.101 69 2 0 4535 4603 296199897 296199829 2.910000e-22 117.0
5 TraesCS6A01G224800 chr6B 90.582 1168 69 14 2473 3628 461264762 461265900 0.000000e+00 1509.0
6 TraesCS6A01G224800 chr6B 94.263 889 33 13 1560 2434 461263879 461264763 0.000000e+00 1343.0
7 TraesCS6A01G224800 chr6B 92.714 700 21 11 734 1422 461262912 461263592 0.000000e+00 983.0
8 TraesCS6A01G224800 chr3D 86.426 582 45 18 189 737 87383911 87384491 1.420000e-169 606.0
9 TraesCS6A01G224800 chr3D 88.938 226 24 1 23 248 87383776 87384000 1.260000e-70 278.0
10 TraesCS6A01G224800 chr7D 91.841 429 31 3 23 447 184842821 184842393 3.070000e-166 595.0
11 TraesCS6A01G224800 chr7D 93.688 301 19 0 435 735 184833138 184832838 7.020000e-123 451.0
12 TraesCS6A01G224800 chr3B 82.931 580 64 16 189 733 672634910 672635489 1.490000e-134 490.0
13 TraesCS6A01G224800 chr3B 87.179 429 48 5 23 444 672637532 672637960 8.960000e-132 481.0
14 TraesCS6A01G224800 chr3B 86.344 227 30 1 23 248 672647782 672648008 3.560000e-61 246.0
15 TraesCS6A01G224800 chr3B 89.231 65 7 0 1426 1490 682542672 682542608 1.060000e-11 82.4
16 TraesCS6A01G224800 chr3A 86.621 441 53 3 23 457 612605283 612605723 2.490000e-132 483.0
17 TraesCS6A01G224800 chr2A 85.491 448 58 5 15 457 728597528 728597973 1.170000e-125 460.0
18 TraesCS6A01G224800 chr2A 91.919 198 16 0 23 220 444641304 444641107 1.260000e-70 278.0
19 TraesCS6A01G224800 chr2A 81.057 227 37 5 23 244 5485507 5485732 4.730000e-40 176.0
20 TraesCS6A01G224800 chr2A 89.831 59 5 1 1494 1552 102688097 102688040 1.780000e-09 75.0
21 TraesCS6A01G224800 chr5A 84.080 201 27 4 22 217 490050242 490050442 6.080000e-44 189.0
22 TraesCS6A01G224800 chr5A 88.889 54 6 0 1498 1551 33929188 33929241 2.970000e-07 67.6
23 TraesCS6A01G224800 chr1B 89.231 65 7 0 1426 1490 439825156 439825092 1.060000e-11 82.4
24 TraesCS6A01G224800 chr1A 87.143 70 7 2 1422 1490 576096206 576096274 1.370000e-10 78.7
25 TraesCS6A01G224800 chr4D 86.567 67 7 2 1424 1490 350523328 350523264 6.390000e-09 73.1
26 TraesCS6A01G224800 chr5D 86.364 66 8 1 1494 1559 533664019 533663955 2.300000e-08 71.3
27 TraesCS6A01G224800 chr5D 88.889 54 6 0 1498 1551 43962110 43962163 2.970000e-07 67.6
28 TraesCS6A01G224800 chr5D 87.931 58 6 1 1494 1551 50780492 50780436 2.970000e-07 67.6
29 TraesCS6A01G224800 chr7B 86.154 65 8 1 1426 1490 12181592 12181529 8.260000e-08 69.4
30 TraesCS6A01G224800 chr7A 87.097 62 7 1 1428 1489 484396979 484396919 8.260000e-08 69.4
31 TraesCS6A01G224800 chr5B 87.931 58 6 1 1494 1551 50469185 50469129 2.970000e-07 67.6
32 TraesCS6A01G224800 chr5B 87.931 58 6 1 1494 1551 53659837 53659781 2.970000e-07 67.6
33 TraesCS6A01G224800 chr1D 97.297 37 1 0 1498 1534 279101407 279101443 3.840000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G224800 chr6A 421771284 421775886 4602 True 8501.000000 8501 100.000000 1 4603 1 chr6A.!!$R1 4602
1 TraesCS6A01G224800 chr6D 296199829 296204031 4202 True 1671.000000 3954 95.403333 799 4603 3 chr6D.!!$R1 3804
2 TraesCS6A01G224800 chr6B 461262912 461265900 2988 False 1278.333333 1509 92.519667 734 3628 3 chr6B.!!$F1 2894
3 TraesCS6A01G224800 chr3D 87383776 87384491 715 False 442.000000 606 87.682000 23 737 2 chr3D.!!$F1 714
4 TraesCS6A01G224800 chr3B 672634910 672637960 3050 False 485.500000 490 85.055000 23 733 2 chr3B.!!$F2 710

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
396 405 0.035152 TAGGAGCTTGCACACCATGG 60.035 55.000 11.19 11.19 0.00 3.66 F
688 725 0.591488 GCGTCGCACGTATGAGATGA 60.591 55.000 13.44 0.00 42.51 2.92 F
1460 1506 0.027586 CTGTACAAAATAGCGCCGCC 59.972 55.000 4.98 0.00 0.00 6.13 F
1461 1507 1.011574 GTACAAAATAGCGCCGCCG 60.012 57.895 4.98 0.00 37.57 6.46 F
2521 2839 1.088340 CAGCTCTGGCAGATTGACCG 61.088 60.000 19.11 6.22 41.70 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1441 1487 0.027586 GGCGGCGCTATTTTGTACAG 59.972 55.000 32.30 0.0 0.00 2.74 R
2423 2741 2.049888 ATAAGAGCAAGGAAGCTGGC 57.950 50.000 0.00 0.0 46.75 4.85 R
2991 3315 1.756430 GGGAGGGAAGTGAGAATTGC 58.244 55.000 0.00 0.0 0.00 3.56 R
3362 3688 7.012044 CCAACATATTTACCTGGTTAGCAGTAC 59.988 40.741 3.84 0.0 0.00 2.73 R
4312 6824 0.037160 TTCCCCGCCTAACCTGTTTC 59.963 55.000 0.00 0.0 0.00 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.579787 GCAGTGCTACGCGTCGAT 60.580 61.111 18.63 0.00 0.00 3.59
44 45 2.022346 GTGCTACGCGTCGATCGA 59.978 61.111 18.63 15.15 42.86 3.59
105 106 2.457813 TGGACACCCTAATAGCCGTA 57.542 50.000 0.00 0.00 0.00 4.02
106 107 2.966915 TGGACACCCTAATAGCCGTAT 58.033 47.619 0.00 0.00 0.00 3.06
143 144 2.935201 GCAACCATCACTTTGCAACAAA 59.065 40.909 0.00 0.00 46.13 2.83
184 185 2.842208 CAACCGAGTTCTTGTTGCAA 57.158 45.000 0.00 0.00 33.72 4.08
185 186 2.719798 CAACCGAGTTCTTGTTGCAAG 58.280 47.619 0.00 2.71 33.72 4.01
186 187 2.325583 ACCGAGTTCTTGTTGCAAGA 57.674 45.000 0.00 7.41 0.00 3.02
187 188 2.639065 ACCGAGTTCTTGTTGCAAGAA 58.361 42.857 17.23 17.23 34.20 2.52
188 189 3.013921 ACCGAGTTCTTGTTGCAAGAAA 58.986 40.909 21.23 2.55 37.93 2.52
189 190 3.632145 ACCGAGTTCTTGTTGCAAGAAAT 59.368 39.130 21.23 20.51 37.93 2.17
190 191 4.097892 ACCGAGTTCTTGTTGCAAGAAATT 59.902 37.500 21.23 14.49 37.93 1.82
191 192 4.676924 CCGAGTTCTTGTTGCAAGAAATTC 59.323 41.667 21.23 19.24 37.93 2.17
192 193 4.676924 CGAGTTCTTGTTGCAAGAAATTCC 59.323 41.667 21.23 11.83 37.93 3.01
193 194 4.948847 AGTTCTTGTTGCAAGAAATTCCC 58.051 39.130 21.23 11.55 37.93 3.97
194 195 3.641437 TCTTGTTGCAAGAAATTCCCG 57.359 42.857 10.53 0.00 0.00 5.14
195 196 2.061028 CTTGTTGCAAGAAATTCCCGC 58.939 47.619 10.53 0.00 0.00 6.13
196 197 1.035923 TGTTGCAAGAAATTCCCGCA 58.964 45.000 0.00 3.20 0.00 5.69
197 198 1.410517 TGTTGCAAGAAATTCCCGCAA 59.589 42.857 13.48 13.48 40.08 4.85
198 199 2.147436 TTGCAAGAAATTCCCGCAAC 57.853 45.000 13.48 0.00 37.64 4.17
199 200 1.035923 TGCAAGAAATTCCCGCAACA 58.964 45.000 4.69 0.00 0.00 3.33
200 201 1.000385 TGCAAGAAATTCCCGCAACAG 60.000 47.619 4.69 0.00 0.00 3.16
201 202 1.269448 GCAAGAAATTCCCGCAACAGA 59.731 47.619 0.08 0.00 0.00 3.41
202 203 2.669391 GCAAGAAATTCCCGCAACAGAG 60.669 50.000 0.08 0.00 0.00 3.35
203 204 1.826385 AGAAATTCCCGCAACAGAGG 58.174 50.000 0.00 0.00 0.00 3.69
204 205 1.073923 AGAAATTCCCGCAACAGAGGT 59.926 47.619 0.00 0.00 0.00 3.85
205 206 1.468914 GAAATTCCCGCAACAGAGGTC 59.531 52.381 0.00 0.00 0.00 3.85
206 207 0.693049 AATTCCCGCAACAGAGGTCT 59.307 50.000 0.00 0.00 0.00 3.85
207 208 0.693049 ATTCCCGCAACAGAGGTCTT 59.307 50.000 0.00 0.00 0.00 3.01
208 209 0.250295 TTCCCGCAACAGAGGTCTTG 60.250 55.000 0.00 0.00 0.00 3.02
209 210 1.071471 CCCGCAACAGAGGTCTTGT 59.929 57.895 0.00 0.00 0.00 3.16
210 211 0.535102 CCCGCAACAGAGGTCTTGTT 60.535 55.000 0.00 0.00 0.00 2.83
211 212 1.270625 CCCGCAACAGAGGTCTTGTTA 60.271 52.381 0.00 0.00 0.00 2.41
212 213 1.798813 CCGCAACAGAGGTCTTGTTAC 59.201 52.381 0.00 0.00 0.00 2.50
213 214 2.479837 CGCAACAGAGGTCTTGTTACA 58.520 47.619 0.00 0.00 0.00 2.41
219 220 6.404293 GCAACAGAGGTCTTGTTACAGAAAAA 60.404 38.462 0.00 0.00 0.00 1.94
223 224 6.712547 CAGAGGTCTTGTTACAGAAAAATCCT 59.287 38.462 0.00 0.00 0.00 3.24
238 239 5.789643 AAAATCCTGCAACAAAGCTCTTA 57.210 34.783 0.00 0.00 34.99 2.10
349 358 3.003480 CAAAAACAAAACCGCCTCCAAA 58.997 40.909 0.00 0.00 0.00 3.28
365 374 2.927580 AAAGCCTCGTCGCCTTCGA 61.928 57.895 0.00 0.00 43.28 3.71
396 405 0.035152 TAGGAGCTTGCACACCATGG 60.035 55.000 11.19 11.19 0.00 3.66
407 416 1.131126 CACACCATGGCGATTGACTTC 59.869 52.381 13.04 0.00 0.00 3.01
417 426 1.079681 ATTGACTTCGCGGGCGTTA 60.080 52.632 13.21 2.00 40.74 3.18
420 429 2.431942 ACTTCGCGGGCGTTACTG 60.432 61.111 13.21 3.07 40.74 2.74
430 439 2.258013 GCGTTACTGCAGCCCACAA 61.258 57.895 15.27 0.00 34.15 3.33
444 453 3.958860 ACAAGAGCTTGGGCGGCT 61.959 61.111 9.56 0.00 44.45 5.52
601 638 2.133281 TATCCGTTCGTGGGAGAGAA 57.867 50.000 0.00 0.00 36.91 2.87
608 645 3.323243 GTTCGTGGGAGAGAAATCGAAA 58.677 45.455 0.00 0.00 38.61 3.46
624 661 8.642432 AGAAATCGAAAAGGAAAGGAAGAAAAT 58.358 29.630 0.00 0.00 0.00 1.82
630 667 7.061094 CGAAAAGGAAAGGAAGAAAATCAATCG 59.939 37.037 0.00 0.00 0.00 3.34
634 671 6.265422 AGGAAAGGAAGAAAATCAATCGTTGT 59.735 34.615 0.00 0.00 0.00 3.32
656 693 2.043227 GAGATAGTGCTAAGTGGGCCT 58.957 52.381 4.53 0.00 0.00 5.19
686 723 1.654440 CGCGTCGCACGTATGAGAT 60.654 57.895 18.75 0.00 44.73 2.75
688 725 0.591488 GCGTCGCACGTATGAGATGA 60.591 55.000 13.44 0.00 42.51 2.92
704 741 2.202623 GACGGATGCTCGCGAGTT 60.203 61.111 34.46 23.42 0.00 3.01
764 801 8.298729 TGCTGGATGGAACTATATATAGTCAG 57.701 38.462 22.69 22.04 42.47 3.51
788 826 1.802069 AAAGCAGAACCTTCGAGAGC 58.198 50.000 0.00 0.00 0.00 4.09
789 827 0.972883 AAGCAGAACCTTCGAGAGCT 59.027 50.000 0.00 0.00 0.00 4.09
790 828 0.972883 AGCAGAACCTTCGAGAGCTT 59.027 50.000 0.00 0.00 0.00 3.74
877 915 1.078347 TTCCACAAGGCAATCCCCC 59.922 57.895 0.00 0.00 33.74 5.40
1122 1160 1.218316 CCAGACTTCGCAGTACCCC 59.782 63.158 0.00 0.00 31.22 4.95
1219 1257 1.663695 AATAACTCCCCATTCGCGTG 58.336 50.000 5.77 0.00 0.00 5.34
1284 1322 2.109128 TCCTCCCTGTAATTTGTTGGCA 59.891 45.455 0.00 0.00 0.00 4.92
1394 1440 1.069296 CGAAAACGCATCCAAAGCTGA 60.069 47.619 0.00 0.00 0.00 4.26
1401 1447 3.056107 ACGCATCCAAAGCTGAACTAGTA 60.056 43.478 0.00 0.00 0.00 1.82
1422 1468 7.793927 AGTATTTCTTACTTCATTGCTAGCC 57.206 36.000 13.29 0.00 37.96 3.93
1423 1469 7.338710 AGTATTTCTTACTTCATTGCTAGCCA 58.661 34.615 13.29 0.19 37.96 4.75
1424 1470 7.829211 AGTATTTCTTACTTCATTGCTAGCCAA 59.171 33.333 13.29 7.16 37.96 4.52
1425 1471 6.500684 TTTCTTACTTCATTGCTAGCCAAG 57.499 37.500 13.29 11.19 36.76 3.61
1426 1472 5.420725 TCTTACTTCATTGCTAGCCAAGA 57.579 39.130 13.29 0.00 36.76 3.02
1427 1473 5.804639 TCTTACTTCATTGCTAGCCAAGAA 58.195 37.500 13.29 9.26 36.76 2.52
1428 1474 6.237901 TCTTACTTCATTGCTAGCCAAGAAA 58.762 36.000 13.29 0.00 36.76 2.52
1429 1475 6.714810 TCTTACTTCATTGCTAGCCAAGAAAA 59.285 34.615 13.29 0.00 36.76 2.29
1430 1476 5.382618 ACTTCATTGCTAGCCAAGAAAAG 57.617 39.130 13.29 10.57 36.76 2.27
1431 1477 5.072741 ACTTCATTGCTAGCCAAGAAAAGA 58.927 37.500 13.29 0.00 36.76 2.52
1432 1478 5.536161 ACTTCATTGCTAGCCAAGAAAAGAA 59.464 36.000 13.29 7.19 36.76 2.52
1433 1479 6.040842 ACTTCATTGCTAGCCAAGAAAAGAAA 59.959 34.615 13.29 0.00 31.57 2.52
1435 1481 7.701539 TCATTGCTAGCCAAGAAAAGAAATA 57.298 32.000 13.29 0.00 36.76 1.40
1437 1483 6.515272 TTGCTAGCCAAGAAAAGAAATAGG 57.485 37.500 13.29 0.00 0.00 2.57
1438 1484 4.949856 TGCTAGCCAAGAAAAGAAATAGGG 59.050 41.667 13.29 0.00 0.00 3.53
1439 1485 4.202060 GCTAGCCAAGAAAAGAAATAGGGC 60.202 45.833 2.29 0.00 40.41 5.19
1441 1487 2.735444 GCCAAGAAAAGAAATAGGGCGC 60.735 50.000 0.00 0.00 0.00 6.53
1442 1488 2.755103 CCAAGAAAAGAAATAGGGCGCT 59.245 45.455 7.64 8.86 0.00 5.92
1445 1491 4.216411 AGAAAAGAAATAGGGCGCTGTA 57.784 40.909 14.51 0.00 0.00 2.74
1446 1492 3.939592 AGAAAAGAAATAGGGCGCTGTAC 59.060 43.478 14.51 5.14 0.00 2.90
1448 1494 3.343941 AAGAAATAGGGCGCTGTACAA 57.656 42.857 14.51 0.00 0.00 2.41
1449 1495 3.343941 AGAAATAGGGCGCTGTACAAA 57.656 42.857 14.51 0.00 0.00 2.83
1450 1496 3.681593 AGAAATAGGGCGCTGTACAAAA 58.318 40.909 14.51 0.00 0.00 2.44
1451 1497 4.270008 AGAAATAGGGCGCTGTACAAAAT 58.730 39.130 14.51 0.00 0.00 1.82
1453 1499 5.527582 AGAAATAGGGCGCTGTACAAAATAG 59.472 40.000 14.51 0.00 0.00 1.73
1454 1500 1.379527 AGGGCGCTGTACAAAATAGC 58.620 50.000 7.64 0.00 0.00 2.97
1459 1505 0.588980 GCTGTACAAAATAGCGCCGC 60.589 55.000 2.29 0.00 0.00 6.53
1460 1506 0.027586 CTGTACAAAATAGCGCCGCC 59.972 55.000 4.98 0.00 0.00 6.13
1461 1507 1.011574 GTACAAAATAGCGCCGCCG 60.012 57.895 4.98 0.00 37.57 6.46
1472 1518 1.369209 CGCCGCCGCTGAAAATATG 60.369 57.895 0.00 0.00 0.00 1.78
1473 1519 1.658409 GCCGCCGCTGAAAATATGC 60.658 57.895 0.00 0.00 0.00 3.14
1475 1521 1.225855 CCGCCGCTGAAAATATGCTA 58.774 50.000 0.00 0.00 0.00 3.49
1476 1522 1.806542 CCGCCGCTGAAAATATGCTAT 59.193 47.619 0.00 0.00 0.00 2.97
1477 1523 2.226437 CCGCCGCTGAAAATATGCTATT 59.774 45.455 0.00 0.00 0.00 1.73
1478 1524 3.435327 CCGCCGCTGAAAATATGCTATTA 59.565 43.478 0.00 0.00 0.00 0.98
1479 1525 4.436050 CCGCCGCTGAAAATATGCTATTAG 60.436 45.833 0.00 0.00 0.00 1.73
1480 1526 4.406943 GCCGCTGAAAATATGCTATTAGC 58.593 43.478 8.80 8.80 42.82 3.09
1482 1528 5.269459 CGCTGAAAATATGCTATTAGCGT 57.731 39.130 14.53 14.53 46.26 5.07
1483 1529 5.075448 CGCTGAAAATATGCTATTAGCGTG 58.925 41.667 18.61 3.32 46.26 5.34
1484 1530 4.848299 GCTGAAAATATGCTATTAGCGTGC 59.152 41.667 18.61 8.97 46.26 5.34
1491 1796 9.436957 AAAATATGCTATTAGCGTGCTATAAGT 57.563 29.630 18.61 0.00 46.26 2.24
1496 1801 7.627340 TGCTATTAGCGTGCTATAAGTTTTTC 58.373 34.615 10.94 0.00 46.26 2.29
1500 1805 8.895932 ATTAGCGTGCTATAAGTTTTTCTTTG 57.104 30.769 1.86 0.00 37.56 2.77
1548 1853 7.039644 ACGTCTTATATTAAGTCATGGAGGGAG 60.040 40.741 0.00 0.00 0.00 4.30
1550 1855 9.310449 GTCTTATATTAAGTCATGGAGGGAGTA 57.690 37.037 0.00 0.00 0.00 2.59
1600 1906 7.283127 GGATGCTAAGTGATGAGTTATTTCCAA 59.717 37.037 0.00 0.00 0.00 3.53
1870 2183 3.520569 TGAAGCAAACAAAAAGGCAGTC 58.479 40.909 0.00 0.00 0.00 3.51
2081 2394 1.842381 AAAGCACCTTCCCTCTCCCG 61.842 60.000 0.00 0.00 0.00 5.14
2518 2836 1.565067 TCTCAGCTCTGGCAGATTGA 58.435 50.000 19.11 21.38 41.70 2.57
2521 2839 1.088340 CAGCTCTGGCAGATTGACCG 61.088 60.000 19.11 6.22 41.70 4.79
2682 3000 2.238646 CCTAACACCCACAATCTAGCCA 59.761 50.000 0.00 0.00 0.00 4.75
2762 3084 7.019153 ACCATATCTCTTAGGATCACCTCTAGT 59.981 40.741 0.00 0.00 46.43 2.57
2763 3085 7.339212 CCATATCTCTTAGGATCACCTCTAGTG 59.661 44.444 0.00 0.00 46.43 2.74
2859 3182 6.723977 ACCTTATTATTGGTGGTTGTGATGTT 59.276 34.615 0.00 0.00 34.90 2.71
2924 3247 2.885266 TGTCTCGTCTTCTGCTTGTACT 59.115 45.455 0.00 0.00 0.00 2.73
2925 3248 3.238441 GTCTCGTCTTCTGCTTGTACTG 58.762 50.000 0.00 0.00 0.00 2.74
2949 3273 9.214957 CTGGTTATTAGTAGTTGTGTCATTTGA 57.785 33.333 0.00 0.00 0.00 2.69
2978 3302 7.912250 GCTTTCCATTGTATGAGTATTTCTGTG 59.088 37.037 0.00 0.00 0.00 3.66
2991 3315 8.461222 TGAGTATTTCTGTGCCTTTCATATTTG 58.539 33.333 0.00 0.00 0.00 2.32
3138 3462 2.829120 GTGAGTCTTGCCTCTTCTACCT 59.171 50.000 0.00 0.00 32.50 3.08
3147 3471 4.809193 TGCCTCTTCTACCTATGACATCT 58.191 43.478 0.00 0.00 0.00 2.90
3151 3475 7.177568 TGCCTCTTCTACCTATGACATCTATTC 59.822 40.741 0.00 0.00 0.00 1.75
3243 3569 4.393062 GGTAAAACTAAAGGCTACGGGTTC 59.607 45.833 0.00 0.00 0.00 3.62
3362 3688 5.700832 TCCTTGTACTGCAGTCAAACTTATG 59.299 40.000 25.56 12.94 0.00 1.90
3578 5999 3.065786 CACAGAAGAAGCTCAAAGTGCAA 59.934 43.478 0.00 0.00 0.00 4.08
3623 6044 7.597386 AGTGAAGCAAATAATTCTCCTTGTTC 58.403 34.615 0.00 0.00 0.00 3.18
3638 6059 3.865745 CCTTGTTCGTCATCACAGTATCC 59.134 47.826 0.00 0.00 0.00 2.59
3649 6070 6.317140 GTCATCACAGTATCCACAATGATGTT 59.683 38.462 10.80 0.00 43.27 2.71
3687 6108 4.911390 ACAGTTGATGTAAGCCTTTAGCT 58.089 39.130 0.00 0.00 45.24 3.32
3752 6173 8.964476 AGGTGTAAATATCCAAATGACTAGTG 57.036 34.615 0.00 0.00 0.00 2.74
3812 6233 5.601583 TGATTGCAAATGCTATGGATTGT 57.398 34.783 1.71 0.00 42.66 2.71
3813 6234 5.979993 TGATTGCAAATGCTATGGATTGTT 58.020 33.333 1.71 0.00 42.66 2.83
3814 6235 6.044046 TGATTGCAAATGCTATGGATTGTTC 58.956 36.000 1.71 0.00 42.66 3.18
3881 6302 2.819608 GCTGCTAACAAATGACCTCCAA 59.180 45.455 0.00 0.00 0.00 3.53
3886 6307 5.221224 TGCTAACAAATGACCTCCAAAAGTG 60.221 40.000 0.00 0.00 0.00 3.16
3887 6308 5.009610 GCTAACAAATGACCTCCAAAAGTGA 59.990 40.000 0.00 0.00 0.00 3.41
3888 6309 5.520376 AACAAATGACCTCCAAAAGTGAG 57.480 39.130 0.00 0.00 0.00 3.51
3892 6313 3.987404 CCTCCAAAAGTGAGGCGG 58.013 61.111 0.00 0.00 42.75 6.13
3893 6314 1.073199 CCTCCAAAAGTGAGGCGGT 59.927 57.895 0.00 0.00 42.75 5.68
3894 6315 1.237285 CCTCCAAAAGTGAGGCGGTG 61.237 60.000 0.00 0.00 42.75 4.94
3895 6316 0.535102 CTCCAAAAGTGAGGCGGTGT 60.535 55.000 0.00 0.00 0.00 4.16
3903 6324 2.973945 AGTGAGGCGGTGTAGATTTTC 58.026 47.619 0.00 0.00 0.00 2.29
3906 6327 3.751698 GTGAGGCGGTGTAGATTTTCTTT 59.248 43.478 0.00 0.00 0.00 2.52
3907 6328 4.215613 GTGAGGCGGTGTAGATTTTCTTTT 59.784 41.667 0.00 0.00 0.00 2.27
3908 6329 4.825085 TGAGGCGGTGTAGATTTTCTTTTT 59.175 37.500 0.00 0.00 0.00 1.94
4011 6438 5.384063 AGATCACCGATGACTATAAGCAG 57.616 43.478 0.00 0.00 37.79 4.24
4012 6439 4.830046 AGATCACCGATGACTATAAGCAGT 59.170 41.667 0.00 0.00 37.79 4.40
4016 6443 4.504461 CACCGATGACTATAAGCAGTGAAC 59.496 45.833 0.00 0.00 0.00 3.18
4018 6445 4.051922 CGATGACTATAAGCAGTGAACCC 58.948 47.826 0.00 0.00 0.00 4.11
4019 6446 3.906720 TGACTATAAGCAGTGAACCCC 57.093 47.619 0.00 0.00 0.00 4.95
4022 6449 2.167900 ACTATAAGCAGTGAACCCCGTC 59.832 50.000 0.00 0.00 0.00 4.79
4023 6450 0.981183 ATAAGCAGTGAACCCCGTCA 59.019 50.000 0.00 0.00 0.00 4.35
4024 6451 0.981183 TAAGCAGTGAACCCCGTCAT 59.019 50.000 0.00 0.00 0.00 3.06
4025 6452 0.321653 AAGCAGTGAACCCCGTCATC 60.322 55.000 0.00 0.00 0.00 2.92
4028 6455 1.726853 CAGTGAACCCCGTCATCTTC 58.273 55.000 0.00 0.00 0.00 2.87
4030 6457 1.276421 AGTGAACCCCGTCATCTTCTG 59.724 52.381 0.00 0.00 0.00 3.02
4031 6458 1.275291 GTGAACCCCGTCATCTTCTGA 59.725 52.381 0.00 0.00 0.00 3.27
4054 6554 6.091849 TGACGAGTGTTGTAGTAGATAGACAC 59.908 42.308 0.00 0.00 38.06 3.67
4056 6556 5.220815 CGAGTGTTGTAGTAGATAGACACCC 60.221 48.000 0.00 0.00 38.43 4.61
4059 6559 4.202441 GTTGTAGTAGATAGACACCCGGA 58.798 47.826 0.73 0.00 0.00 5.14
4065 6565 6.445451 AGTAGATAGACACCCGGATAGTTA 57.555 41.667 0.73 0.00 0.00 2.24
4075 6575 5.171476 CACCCGGATAGTTATCATGCTAAG 58.829 45.833 0.73 0.00 34.40 2.18
4076 6576 4.184629 CCCGGATAGTTATCATGCTAAGC 58.815 47.826 0.73 0.00 34.40 3.09
4077 6577 4.184629 CCGGATAGTTATCATGCTAAGCC 58.815 47.826 0.00 0.00 34.40 4.35
4091 6592 2.436173 GCTAAGCCAGTAGAGGACCAAT 59.564 50.000 0.00 0.00 0.00 3.16
4092 6593 3.742640 GCTAAGCCAGTAGAGGACCAATG 60.743 52.174 0.00 0.00 0.00 2.82
4093 6594 1.958288 AGCCAGTAGAGGACCAATGT 58.042 50.000 0.00 0.00 0.00 2.71
4095 6596 2.766828 AGCCAGTAGAGGACCAATGTAC 59.233 50.000 0.00 0.00 0.00 2.90
4096 6597 2.158943 GCCAGTAGAGGACCAATGTACC 60.159 54.545 0.00 0.00 0.00 3.34
4098 6599 3.517901 CCAGTAGAGGACCAATGTACCAA 59.482 47.826 0.00 0.00 0.00 3.67
4101 6602 5.411669 CAGTAGAGGACCAATGTACCAAAAC 59.588 44.000 0.00 0.00 0.00 2.43
4103 6604 4.798882 AGAGGACCAATGTACCAAAACAA 58.201 39.130 0.00 0.00 32.02 2.83
4108 6609 5.394773 GGACCAATGTACCAAAACAACAACT 60.395 40.000 0.00 0.00 32.02 3.16
4115 6616 2.952978 ACCAAAACAACAACTGCCGATA 59.047 40.909 0.00 0.00 0.00 2.92
4120 6621 2.066262 ACAACAACTGCCGATAACGAG 58.934 47.619 0.00 0.00 42.66 4.18
4123 6624 2.334838 ACAACTGCCGATAACGAGAAC 58.665 47.619 0.00 0.00 42.66 3.01
4125 6626 2.734606 CAACTGCCGATAACGAGAACAA 59.265 45.455 0.00 0.00 42.66 2.83
4126 6627 2.334838 ACTGCCGATAACGAGAACAAC 58.665 47.619 0.00 0.00 42.66 3.32
4127 6628 1.320555 CTGCCGATAACGAGAACAACG 59.679 52.381 0.00 0.00 42.66 4.10
4128 6629 1.068402 TGCCGATAACGAGAACAACGA 60.068 47.619 0.00 0.00 42.66 3.85
4129 6630 1.319669 GCCGATAACGAGAACAACGAC 59.680 52.381 0.00 0.00 42.66 4.34
4130 6631 1.576246 CCGATAACGAGAACAACGACG 59.424 52.381 0.00 0.00 42.66 5.12
4131 6632 2.498905 CGATAACGAGAACAACGACGA 58.501 47.619 0.00 0.00 42.66 4.20
4132 6633 2.904319 CGATAACGAGAACAACGACGAA 59.096 45.455 0.00 0.00 42.66 3.85
4133 6634 3.358700 CGATAACGAGAACAACGACGAAA 59.641 43.478 0.00 0.00 42.66 3.46
4134 6635 4.143762 CGATAACGAGAACAACGACGAAAA 60.144 41.667 0.00 0.00 42.66 2.29
4135 6636 2.984879 ACGAGAACAACGACGAAAAC 57.015 45.000 0.00 0.00 34.70 2.43
4136 6637 2.261345 ACGAGAACAACGACGAAAACA 58.739 42.857 0.00 0.00 34.70 2.83
4137 6638 2.028404 ACGAGAACAACGACGAAAACAC 59.972 45.455 0.00 0.00 34.70 3.32
4138 6639 2.028284 CGAGAACAACGACGAAAACACA 59.972 45.455 0.00 0.00 0.00 3.72
4147 6648 2.607635 CGACGAAAACACATAGATGGGG 59.392 50.000 0.00 0.00 34.87 4.96
4172 6673 1.980765 TCCAGCCTCAAGACATGAACT 59.019 47.619 0.00 0.00 37.67 3.01
4173 6674 3.173151 TCCAGCCTCAAGACATGAACTA 58.827 45.455 0.00 0.00 37.67 2.24
4185 6686 3.826729 GACATGAACTAGGCAAAACCCTT 59.173 43.478 0.00 0.00 40.58 3.95
4187 6688 2.593026 TGAACTAGGCAAAACCCTTGG 58.407 47.619 0.00 0.00 40.58 3.61
4188 6689 2.175931 TGAACTAGGCAAAACCCTTGGA 59.824 45.455 0.00 0.00 40.58 3.53
4189 6690 2.586648 ACTAGGCAAAACCCTTGGAG 57.413 50.000 0.00 0.00 40.58 3.86
4190 6691 1.075536 ACTAGGCAAAACCCTTGGAGG 59.924 52.381 0.00 0.00 40.58 4.30
4191 6692 1.354368 CTAGGCAAAACCCTTGGAGGA 59.646 52.381 0.00 0.00 37.67 3.71
4193 6694 1.185618 GGCAAAACCCTTGGAGGACC 61.186 60.000 0.00 0.00 37.67 4.46
4194 6695 0.469144 GCAAAACCCTTGGAGGACCA 60.469 55.000 0.00 0.00 45.34 4.02
4195 6696 1.328279 CAAAACCCTTGGAGGACCAC 58.672 55.000 0.00 0.00 46.80 4.16
4196 6697 0.187606 AAAACCCTTGGAGGACCACC 59.812 55.000 0.04 0.04 46.80 4.61
4197 6698 2.064242 AAACCCTTGGAGGACCACCG 62.064 60.000 3.27 0.00 46.80 4.94
4200 6701 2.358737 CTTGGAGGACCACCGCAC 60.359 66.667 3.27 0.00 46.80 5.34
4201 6702 3.164977 TTGGAGGACCACCGCACA 61.165 61.111 3.27 0.00 46.80 4.57
4204 6705 3.986006 GAGGACCACCGCACACGA 61.986 66.667 0.00 0.00 43.93 4.35
4206 6707 3.343421 GGACCACCGCACACGAAC 61.343 66.667 0.00 0.00 43.93 3.95
4207 6708 3.698463 GACCACCGCACACGAACG 61.698 66.667 0.00 0.00 43.93 3.95
4240 6752 7.969690 ATCCGAGTAGATCCATCAAAGATAT 57.030 36.000 0.00 0.00 0.00 1.63
4248 6760 6.462500 AGATCCATCAAAGATATCAACCGAG 58.538 40.000 5.32 0.00 0.00 4.63
4250 6762 4.101585 TCCATCAAAGATATCAACCGAGCT 59.898 41.667 5.32 0.00 0.00 4.09
4257 6769 7.439356 TCAAAGATATCAACCGAGCTAATTCTG 59.561 37.037 5.32 0.00 0.00 3.02
4267 6779 4.063689 CGAGCTAATTCTGCAAGATCCAT 58.936 43.478 6.21 0.00 46.36 3.41
4269 6781 4.063689 AGCTAATTCTGCAAGATCCATCG 58.936 43.478 6.21 0.00 46.36 3.84
4276 6788 2.864946 CTGCAAGATCCATCGAAGACAG 59.135 50.000 0.00 0.00 35.01 3.51
4277 6789 2.234661 TGCAAGATCCATCGAAGACAGT 59.765 45.455 0.00 0.00 42.51 3.55
4285 6797 2.547855 CCATCGAAGACAGTTCCACACA 60.548 50.000 0.00 0.00 42.51 3.72
4286 6798 2.218953 TCGAAGACAGTTCCACACAC 57.781 50.000 0.00 0.00 0.00 3.82
4288 6800 1.594331 GAAGACAGTTCCACACACCC 58.406 55.000 0.00 0.00 0.00 4.61
4289 6801 1.141053 GAAGACAGTTCCACACACCCT 59.859 52.381 0.00 0.00 0.00 4.34
4290 6802 0.759346 AGACAGTTCCACACACCCTC 59.241 55.000 0.00 0.00 0.00 4.30
4291 6803 0.759346 GACAGTTCCACACACCCTCT 59.241 55.000 0.00 0.00 0.00 3.69
4292 6804 0.469917 ACAGTTCCACACACCCTCTG 59.530 55.000 0.00 0.00 0.00 3.35
4294 6806 1.349026 CAGTTCCACACACCCTCTGAT 59.651 52.381 0.00 0.00 0.00 2.90
4295 6807 1.349026 AGTTCCACACACCCTCTGATG 59.651 52.381 0.00 0.00 0.00 3.07
4296 6808 1.347707 GTTCCACACACCCTCTGATGA 59.652 52.381 0.00 0.00 0.00 2.92
4299 6811 2.644299 TCCACACACCCTCTGATGATTT 59.356 45.455 0.00 0.00 0.00 2.17
4300 6812 3.074390 TCCACACACCCTCTGATGATTTT 59.926 43.478 0.00 0.00 0.00 1.82
4302 6814 4.637534 CCACACACCCTCTGATGATTTTAG 59.362 45.833 0.00 0.00 0.00 1.85
4303 6815 5.491070 CACACACCCTCTGATGATTTTAGA 58.509 41.667 0.00 0.00 0.00 2.10
4304 6816 5.352569 CACACACCCTCTGATGATTTTAGAC 59.647 44.000 0.00 0.00 0.00 2.59
4305 6817 4.878397 CACACCCTCTGATGATTTTAGACC 59.122 45.833 0.00 0.00 0.00 3.85
4306 6818 4.536090 ACACCCTCTGATGATTTTAGACCA 59.464 41.667 0.00 0.00 0.00 4.02
4308 6820 4.080299 ACCCTCTGATGATTTTAGACCACC 60.080 45.833 0.00 0.00 0.00 4.61
4309 6821 4.080356 CCCTCTGATGATTTTAGACCACCA 60.080 45.833 0.00 0.00 0.00 4.17
4311 6823 6.125029 CCTCTGATGATTTTAGACCACCATT 58.875 40.000 0.00 0.00 0.00 3.16
4312 6824 6.039047 CCTCTGATGATTTTAGACCACCATTG 59.961 42.308 0.00 0.00 0.00 2.82
4314 6826 7.174413 TCTGATGATTTTAGACCACCATTGAA 58.826 34.615 0.00 0.00 0.00 2.69
4318 6830 6.980593 TGATTTTAGACCACCATTGAAACAG 58.019 36.000 0.00 0.00 0.00 3.16
4319 6831 5.782893 TTTTAGACCACCATTGAAACAGG 57.217 39.130 0.00 0.00 0.00 4.00
4320 6832 4.447138 TTAGACCACCATTGAAACAGGT 57.553 40.909 0.00 0.00 35.65 4.00
4321 6833 3.312736 AGACCACCATTGAAACAGGTT 57.687 42.857 0.00 0.00 32.15 3.50
4322 6834 4.447138 AGACCACCATTGAAACAGGTTA 57.553 40.909 0.00 0.00 32.15 2.85
4323 6835 4.398319 AGACCACCATTGAAACAGGTTAG 58.602 43.478 0.00 0.00 32.15 2.34
4324 6836 3.496331 ACCACCATTGAAACAGGTTAGG 58.504 45.455 0.00 0.00 32.15 2.69
4325 6837 2.231235 CCACCATTGAAACAGGTTAGGC 59.769 50.000 0.00 0.00 32.15 3.93
4326 6838 2.095263 CACCATTGAAACAGGTTAGGCG 60.095 50.000 0.00 0.00 32.15 5.52
4327 6839 1.472480 CCATTGAAACAGGTTAGGCGG 59.528 52.381 0.00 0.00 0.00 6.13
4328 6840 1.472480 CATTGAAACAGGTTAGGCGGG 59.528 52.381 0.00 0.00 0.00 6.13
4329 6841 0.250989 TTGAAACAGGTTAGGCGGGG 60.251 55.000 0.00 0.00 0.00 5.73
4330 6842 1.128809 TGAAACAGGTTAGGCGGGGA 61.129 55.000 0.00 0.00 0.00 4.81
4331 6843 0.037160 GAAACAGGTTAGGCGGGGAA 59.963 55.000 0.00 0.00 0.00 3.97
4332 6844 0.479378 AAACAGGTTAGGCGGGGAAA 59.521 50.000 0.00 0.00 0.00 3.13
4333 6845 0.479378 AACAGGTTAGGCGGGGAAAA 59.521 50.000 0.00 0.00 0.00 2.29
4334 6846 0.251033 ACAGGTTAGGCGGGGAAAAC 60.251 55.000 0.00 0.00 0.00 2.43
4335 6847 0.963856 CAGGTTAGGCGGGGAAAACC 60.964 60.000 0.00 0.00 41.41 3.27
4336 6848 1.138228 AGGTTAGGCGGGGAAAACCT 61.138 55.000 0.00 0.00 45.35 3.50
4337 6849 0.251474 GGTTAGGCGGGGAAAACCTT 60.251 55.000 0.00 0.00 38.66 3.50
4338 6850 1.004628 GGTTAGGCGGGGAAAACCTTA 59.995 52.381 0.00 0.00 38.66 2.69
4339 6851 2.357465 GGTTAGGCGGGGAAAACCTTAT 60.357 50.000 0.00 0.00 38.66 1.73
4340 6852 3.359033 GTTAGGCGGGGAAAACCTTATT 58.641 45.455 0.00 0.00 40.03 1.40
4341 6853 2.615986 AGGCGGGGAAAACCTTATTT 57.384 45.000 0.00 0.00 40.03 1.40
4342 6854 2.897350 AGGCGGGGAAAACCTTATTTT 58.103 42.857 0.00 0.00 40.03 1.82
4343 6855 4.050315 AGGCGGGGAAAACCTTATTTTA 57.950 40.909 0.00 0.00 40.03 1.52
4344 6856 4.616553 AGGCGGGGAAAACCTTATTTTAT 58.383 39.130 0.00 0.00 40.03 1.40
4347 6859 5.128171 GGCGGGGAAAACCTTATTTTATCTT 59.872 40.000 0.00 0.00 40.03 2.40
4355 6867 5.813080 ACCTTATTTTATCTTCACACGCC 57.187 39.130 0.00 0.00 0.00 5.68
4363 6875 4.351938 TTCACACGCCCTCCGACG 62.352 66.667 0.00 0.00 41.02 5.12
4372 6884 2.501128 CCTCCGACGATGCACCAT 59.499 61.111 0.00 0.00 0.00 3.55
4398 6910 1.691195 GGGGGCTAGGCAGAGAGAAC 61.691 65.000 19.14 0.00 0.00 3.01
4404 6916 3.389656 GGCTAGGCAGAGAGAACCTTATT 59.610 47.826 12.16 0.00 34.92 1.40
4405 6917 4.141597 GGCTAGGCAGAGAGAACCTTATTT 60.142 45.833 12.16 0.00 34.92 1.40
4410 6948 5.003804 GGCAGAGAGAACCTTATTTCACAA 58.996 41.667 0.00 0.00 0.00 3.33
4428 6966 5.415221 TCACAAACCCTAACAAAAGCAAAG 58.585 37.500 0.00 0.00 0.00 2.77
4447 6985 9.476202 AAGCAAAGGAAACATCTAAAAACATAC 57.524 29.630 0.00 0.00 0.00 2.39
4448 6986 8.088365 AGCAAAGGAAACATCTAAAAACATACC 58.912 33.333 0.00 0.00 0.00 2.73
4449 6987 7.330946 GCAAAGGAAACATCTAAAAACATACCC 59.669 37.037 0.00 0.00 0.00 3.69
4450 6988 7.476540 AAGGAAACATCTAAAAACATACCCC 57.523 36.000 0.00 0.00 0.00 4.95
4453 6991 6.096423 GGAAACATCTAAAAACATACCCCTCC 59.904 42.308 0.00 0.00 0.00 4.30
4454 6992 5.125367 ACATCTAAAAACATACCCCTCCC 57.875 43.478 0.00 0.00 0.00 4.30
4455 6993 3.918294 TCTAAAAACATACCCCTCCCG 57.082 47.619 0.00 0.00 0.00 5.14
4456 6994 2.092807 TCTAAAAACATACCCCTCCCGC 60.093 50.000 0.00 0.00 0.00 6.13
4457 6995 0.406361 AAAAACATACCCCTCCCGCA 59.594 50.000 0.00 0.00 0.00 5.69
4458 6996 0.034477 AAAACATACCCCTCCCGCAG 60.034 55.000 0.00 0.00 0.00 5.18
4459 6997 2.552231 AAACATACCCCTCCCGCAGC 62.552 60.000 0.00 0.00 0.00 5.25
4461 6999 2.690881 ATACCCCTCCCGCAGCAA 60.691 61.111 0.00 0.00 0.00 3.91
4462 7000 2.746375 ATACCCCTCCCGCAGCAAG 61.746 63.158 0.00 0.00 0.00 4.01
4480 7045 3.087906 GGTCTACCACGCCCCCAT 61.088 66.667 0.00 0.00 35.64 4.00
4482 7047 3.087253 TCTACCACGCCCCCATGG 61.087 66.667 4.14 4.14 42.13 3.66
4492 7057 4.358841 CCCCATGGCCCGACACAA 62.359 66.667 6.09 0.00 0.00 3.33
4531 7122 2.974692 TTTTGAAGGAGGCAGCGGCA 62.975 55.000 11.88 0.00 43.71 5.69
4532 7123 4.704833 TGAAGGAGGCAGCGGCAC 62.705 66.667 11.88 3.89 43.71 5.01
4533 7124 4.704833 GAAGGAGGCAGCGGCACA 62.705 66.667 11.88 0.00 43.71 4.57
4563 7173 7.040062 TCCATAATTAATTCGGTTGCCCTAATG 60.040 37.037 3.39 0.00 0.00 1.90
4573 7183 3.317150 GTTGCCCTAATGTGCTCAAAAC 58.683 45.455 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.143263 CCGCATAATAATCGTCGGTTTACC 60.143 45.833 0.00 0.00 32.93 2.85
1 2 4.143263 CCCGCATAATAATCGTCGGTTTAC 60.143 45.833 0.00 0.00 35.52 2.01
3 4 2.803956 CCCGCATAATAATCGTCGGTTT 59.196 45.455 0.00 0.00 35.52 3.27
4 5 2.409975 CCCGCATAATAATCGTCGGTT 58.590 47.619 0.00 0.00 35.52 4.44
5 6 1.938016 GCCCGCATAATAATCGTCGGT 60.938 52.381 0.00 0.00 35.52 4.69
6 7 0.719465 GCCCGCATAATAATCGTCGG 59.281 55.000 0.00 0.00 36.90 4.79
7 8 1.390123 CTGCCCGCATAATAATCGTCG 59.610 52.381 0.00 0.00 0.00 5.12
8 9 2.157668 CACTGCCCGCATAATAATCGTC 59.842 50.000 0.00 0.00 0.00 4.20
9 10 2.143122 CACTGCCCGCATAATAATCGT 58.857 47.619 0.00 0.00 0.00 3.73
10 11 1.135972 GCACTGCCCGCATAATAATCG 60.136 52.381 0.00 0.00 0.00 3.34
11 12 2.154462 AGCACTGCCCGCATAATAATC 58.846 47.619 0.00 0.00 0.00 1.75
12 13 2.276732 AGCACTGCCCGCATAATAAT 57.723 45.000 0.00 0.00 0.00 1.28
13 14 2.489971 GTAGCACTGCCCGCATAATAA 58.510 47.619 0.00 0.00 0.00 1.40
14 15 1.604438 CGTAGCACTGCCCGCATAATA 60.604 52.381 0.00 0.00 0.00 0.98
15 16 0.880278 CGTAGCACTGCCCGCATAAT 60.880 55.000 0.00 0.00 0.00 1.28
16 17 1.520564 CGTAGCACTGCCCGCATAA 60.521 57.895 0.00 0.00 0.00 1.90
17 18 2.106131 CGTAGCACTGCCCGCATA 59.894 61.111 0.00 0.00 0.00 3.14
59 60 4.363990 CAGCGAGGCGGCGGATAT 62.364 66.667 9.78 0.00 38.18 1.63
105 106 0.321346 TGCTCACGTGGACACATCAT 59.679 50.000 17.00 0.00 0.00 2.45
106 107 0.105778 TTGCTCACGTGGACACATCA 59.894 50.000 17.00 0.00 0.00 3.07
143 144 3.119849 GCAGAAATACCGCAACATCACTT 60.120 43.478 0.00 0.00 0.00 3.16
173 174 3.798548 GCGGGAATTTCTTGCAACAAGAA 60.799 43.478 16.62 16.62 34.73 2.52
184 185 1.073923 ACCTCTGTTGCGGGAATTTCT 59.926 47.619 0.00 0.00 0.00 2.52
185 186 1.468914 GACCTCTGTTGCGGGAATTTC 59.531 52.381 0.00 0.00 0.00 2.17
186 187 1.073923 AGACCTCTGTTGCGGGAATTT 59.926 47.619 0.00 0.00 0.00 1.82
187 188 0.693049 AGACCTCTGTTGCGGGAATT 59.307 50.000 0.00 0.00 0.00 2.17
188 189 0.693049 AAGACCTCTGTTGCGGGAAT 59.307 50.000 0.00 0.00 0.00 3.01
189 190 0.250295 CAAGACCTCTGTTGCGGGAA 60.250 55.000 0.00 0.00 0.00 3.97
190 191 1.371183 CAAGACCTCTGTTGCGGGA 59.629 57.895 0.00 0.00 0.00 5.14
191 192 0.535102 AACAAGACCTCTGTTGCGGG 60.535 55.000 0.00 0.00 0.00 6.13
192 193 1.798813 GTAACAAGACCTCTGTTGCGG 59.201 52.381 0.00 0.00 0.00 5.69
193 194 2.476619 CTGTAACAAGACCTCTGTTGCG 59.523 50.000 0.00 0.00 32.25 4.85
194 195 3.728845 TCTGTAACAAGACCTCTGTTGC 58.271 45.455 0.00 0.00 0.00 4.17
195 196 6.677781 TTTTCTGTAACAAGACCTCTGTTG 57.322 37.500 0.00 0.00 0.00 3.33
196 197 7.013369 GGATTTTTCTGTAACAAGACCTCTGTT 59.987 37.037 0.00 0.00 0.00 3.16
197 198 6.486993 GGATTTTTCTGTAACAAGACCTCTGT 59.513 38.462 0.00 0.00 0.00 3.41
198 199 6.712547 AGGATTTTTCTGTAACAAGACCTCTG 59.287 38.462 0.00 0.00 0.00 3.35
199 200 6.712547 CAGGATTTTTCTGTAACAAGACCTCT 59.287 38.462 0.00 0.00 0.00 3.69
200 201 6.568653 GCAGGATTTTTCTGTAACAAGACCTC 60.569 42.308 0.00 0.00 34.89 3.85
201 202 5.241728 GCAGGATTTTTCTGTAACAAGACCT 59.758 40.000 0.00 0.00 34.89 3.85
202 203 5.009610 TGCAGGATTTTTCTGTAACAAGACC 59.990 40.000 0.00 0.00 34.89 3.85
203 204 6.072112 TGCAGGATTTTTCTGTAACAAGAC 57.928 37.500 0.00 0.00 34.89 3.01
204 205 6.707440 TTGCAGGATTTTTCTGTAACAAGA 57.293 33.333 0.00 0.00 33.22 3.02
209 210 5.752955 GCTTTGTTGCAGGATTTTTCTGTAA 59.247 36.000 0.00 0.00 35.17 2.41
210 211 5.068987 AGCTTTGTTGCAGGATTTTTCTGTA 59.931 36.000 0.00 0.00 34.89 2.74
211 212 4.122046 GCTTTGTTGCAGGATTTTTCTGT 58.878 39.130 0.00 0.00 34.89 3.41
212 213 4.374399 AGCTTTGTTGCAGGATTTTTCTG 58.626 39.130 0.00 0.00 34.99 3.02
213 214 4.343239 AGAGCTTTGTTGCAGGATTTTTCT 59.657 37.500 0.00 0.00 34.99 2.52
219 220 4.381292 GCAATAAGAGCTTTGTTGCAGGAT 60.381 41.667 24.19 0.00 40.01 3.24
223 224 3.569277 TCTGCAATAAGAGCTTTGTTGCA 59.431 39.130 27.06 27.06 43.70 4.08
238 239 6.867816 TCTTTGTTGCGATAAATTTCTGCAAT 59.132 30.769 20.52 0.00 45.95 3.56
304 310 2.428171 GCAAAGGGCATATTGAAGAGCA 59.572 45.455 1.04 0.00 43.97 4.26
417 426 2.282040 GCTCTTGTGGGCTGCAGT 60.282 61.111 16.64 0.00 0.00 4.40
420 429 2.633509 CCAAGCTCTTGTGGGCTGC 61.634 63.158 8.60 0.00 38.91 5.25
426 435 2.803155 TAGCCGCCCAAGCTCTTGTG 62.803 60.000 8.60 0.00 41.83 3.33
430 439 1.753368 GATCTAGCCGCCCAAGCTCT 61.753 60.000 0.00 0.00 41.83 4.09
444 453 0.673956 CGATCTCCTCGCCGGATCTA 60.674 60.000 5.05 0.00 42.12 1.98
476 513 1.076485 GGCTGCCTCCACCATGAAT 60.076 57.895 12.43 0.00 0.00 2.57
514 551 1.134818 TGCCGTTACAGCATGGTCTAG 60.135 52.381 0.00 0.00 43.62 2.43
516 553 1.676968 TGCCGTTACAGCATGGTCT 59.323 52.632 0.00 0.00 43.62 3.85
601 638 7.951591 TGATTTTCTTCCTTTCCTTTTCGATT 58.048 30.769 0.00 0.00 0.00 3.34
608 645 6.901081 ACGATTGATTTTCTTCCTTTCCTT 57.099 33.333 0.00 0.00 0.00 3.36
624 661 5.836821 AGCACTATCTCTACAACGATTGA 57.163 39.130 0.00 0.00 0.00 2.57
630 667 5.593010 CCCACTTAGCACTATCTCTACAAC 58.407 45.833 0.00 0.00 0.00 3.32
634 671 3.117093 AGGCCCACTTAGCACTATCTCTA 60.117 47.826 0.00 0.00 0.00 2.43
686 723 1.650314 TAACTCGCGAGCATCCGTCA 61.650 55.000 34.83 9.03 32.04 4.35
688 725 0.317938 GATAACTCGCGAGCATCCGT 60.318 55.000 34.83 13.54 32.04 4.69
704 741 4.235762 GCCTTCAGCCGGCGGATA 62.236 66.667 33.44 18.46 37.87 2.59
771 809 0.972883 AAGCTCTCGAAGGTTCTGCT 59.027 50.000 6.32 0.00 41.91 4.24
842 880 1.157585 GAACCGGAAGAAGGTGAAGC 58.842 55.000 9.46 0.00 41.95 3.86
843 881 1.071699 TGGAACCGGAAGAAGGTGAAG 59.928 52.381 9.46 0.00 41.95 3.02
844 882 1.133363 TGGAACCGGAAGAAGGTGAA 58.867 50.000 9.46 0.00 41.95 3.18
845 883 0.395312 GTGGAACCGGAAGAAGGTGA 59.605 55.000 9.46 0.00 41.95 4.02
846 884 0.107831 TGTGGAACCGGAAGAAGGTG 59.892 55.000 9.46 0.00 41.95 4.00
847 885 0.841289 TTGTGGAACCGGAAGAAGGT 59.159 50.000 9.46 0.00 45.29 3.50
848 886 1.523758 CTTGTGGAACCGGAAGAAGG 58.476 55.000 9.46 0.00 34.36 3.46
849 887 1.523758 CCTTGTGGAACCGGAAGAAG 58.476 55.000 9.46 4.82 34.36 2.85
877 915 0.165944 GTGATTGAAACGGCACTCGG 59.834 55.000 0.00 0.00 44.45 4.63
878 916 0.165944 GGTGATTGAAACGGCACTCG 59.834 55.000 0.00 0.00 45.88 4.18
935 973 0.741221 GAAGGCTGGATCACGGTGTC 60.741 60.000 8.17 5.24 0.00 3.67
1219 1257 2.238395 AGGAGGAGCTCTGGAACAAATC 59.762 50.000 14.64 0.00 38.70 2.17
1284 1322 2.032620 CCGACCACCTTAGCTCACTAT 58.967 52.381 0.00 0.00 0.00 2.12
1401 1447 6.886459 TCTTGGCTAGCAATGAAGTAAGAAAT 59.114 34.615 18.24 0.00 0.00 2.17
1422 1468 3.191371 ACAGCGCCCTATTTCTTTTCTTG 59.809 43.478 2.29 0.00 0.00 3.02
1423 1469 3.421844 ACAGCGCCCTATTTCTTTTCTT 58.578 40.909 2.29 0.00 0.00 2.52
1424 1470 3.073274 ACAGCGCCCTATTTCTTTTCT 57.927 42.857 2.29 0.00 0.00 2.52
1425 1471 3.687698 TGTACAGCGCCCTATTTCTTTTC 59.312 43.478 2.29 0.00 0.00 2.29
1426 1472 3.681593 TGTACAGCGCCCTATTTCTTTT 58.318 40.909 2.29 0.00 0.00 2.27
1427 1473 3.343941 TGTACAGCGCCCTATTTCTTT 57.656 42.857 2.29 0.00 0.00 2.52
1428 1474 3.343941 TTGTACAGCGCCCTATTTCTT 57.656 42.857 2.29 0.00 0.00 2.52
1429 1475 3.343941 TTTGTACAGCGCCCTATTTCT 57.656 42.857 2.29 0.00 0.00 2.52
1430 1476 4.632538 ATTTTGTACAGCGCCCTATTTC 57.367 40.909 2.29 0.00 0.00 2.17
1431 1477 4.036380 GCTATTTTGTACAGCGCCCTATTT 59.964 41.667 2.29 0.00 0.00 1.40
1432 1478 3.564225 GCTATTTTGTACAGCGCCCTATT 59.436 43.478 2.29 0.00 0.00 1.73
1433 1479 3.139077 GCTATTTTGTACAGCGCCCTAT 58.861 45.455 2.29 0.00 0.00 2.57
1435 1481 1.379527 GCTATTTTGTACAGCGCCCT 58.620 50.000 2.29 0.00 0.00 5.19
1441 1487 0.027586 GGCGGCGCTATTTTGTACAG 59.972 55.000 32.30 0.00 0.00 2.74
1442 1488 1.697772 CGGCGGCGCTATTTTGTACA 61.698 55.000 32.30 0.00 0.00 2.90
1445 1491 4.174129 GCGGCGGCGCTATTTTGT 62.174 61.111 43.74 0.00 0.00 2.83
1453 1499 3.181169 ATATTTTCAGCGGCGGCGC 62.181 57.895 44.39 44.39 46.35 6.53
1454 1500 1.369209 CATATTTTCAGCGGCGGCG 60.369 57.895 28.70 28.70 46.35 6.46
1455 1501 1.658409 GCATATTTTCAGCGGCGGC 60.658 57.895 9.78 8.43 40.37 6.53
1456 1502 1.225855 TAGCATATTTTCAGCGGCGG 58.774 50.000 9.78 0.00 0.00 6.13
1457 1503 3.542712 AATAGCATATTTTCAGCGGCG 57.457 42.857 0.51 0.51 0.00 6.46
1459 1505 4.641954 CGCTAATAGCATATTTTCAGCGG 58.358 43.478 13.15 0.00 44.97 5.52
1461 1507 4.848299 GCACGCTAATAGCATATTTTCAGC 59.152 41.667 13.15 0.00 42.58 4.26
1462 1508 6.233430 AGCACGCTAATAGCATATTTTCAG 57.767 37.500 13.15 0.00 42.58 3.02
1463 1509 7.905604 ATAGCACGCTAATAGCATATTTTCA 57.094 32.000 13.15 0.00 42.58 2.69
1464 1510 9.907576 CTTATAGCACGCTAATAGCATATTTTC 57.092 33.333 13.15 0.00 42.58 2.29
1465 1511 9.436957 ACTTATAGCACGCTAATAGCATATTTT 57.563 29.630 13.15 0.00 42.58 1.82
1467 1513 9.436957 AAACTTATAGCACGCTAATAGCATATT 57.563 29.630 13.15 0.00 42.58 1.28
1468 1514 9.436957 AAAACTTATAGCACGCTAATAGCATAT 57.563 29.630 13.15 7.17 42.58 1.78
1469 1515 8.827177 AAAACTTATAGCACGCTAATAGCATA 57.173 30.769 13.15 0.00 42.58 3.14
1470 1516 7.730364 AAAACTTATAGCACGCTAATAGCAT 57.270 32.000 13.15 0.00 42.58 3.79
1472 1518 7.852516 AGAAAAACTTATAGCACGCTAATAGC 58.147 34.615 1.41 1.41 38.02 2.97
1475 1521 8.726988 TCAAAGAAAAACTTATAGCACGCTAAT 58.273 29.630 2.32 0.00 37.93 1.73
1476 1522 8.013378 GTCAAAGAAAAACTTATAGCACGCTAA 58.987 33.333 2.32 0.00 37.93 3.09
1477 1523 7.171848 TGTCAAAGAAAAACTTATAGCACGCTA 59.828 33.333 0.39 0.39 37.93 4.26
1478 1524 6.017440 TGTCAAAGAAAAACTTATAGCACGCT 60.017 34.615 0.00 0.00 37.93 5.07
1479 1525 6.086371 GTGTCAAAGAAAAACTTATAGCACGC 59.914 38.462 0.00 0.00 37.93 5.34
1480 1526 7.352739 AGTGTCAAAGAAAAACTTATAGCACG 58.647 34.615 0.00 0.00 37.93 5.34
1541 1846 5.552178 CATAGCTTAAACCATACTCCCTCC 58.448 45.833 0.00 0.00 0.00 4.30
1548 1853 7.083875 TGTCTTTGCATAGCTTAAACCATAC 57.916 36.000 0.00 0.00 0.00 2.39
1550 1855 6.350445 CCTTGTCTTTGCATAGCTTAAACCAT 60.350 38.462 0.00 0.00 0.00 3.55
1552 1857 5.183140 TCCTTGTCTTTGCATAGCTTAAACC 59.817 40.000 0.00 0.00 0.00 3.27
1600 1906 4.838986 ACATATAACCTCCTAATGCTCGGT 59.161 41.667 0.00 0.00 0.00 4.69
1639 1952 8.976986 TTTCACTAACCTATCTACGAAAGAAC 57.023 34.615 0.00 0.00 37.89 3.01
1642 1955 9.582431 TCATTTTCACTAACCTATCTACGAAAG 57.418 33.333 0.00 0.00 0.00 2.62
1870 2183 2.437359 CCAGCTGCCTTTCGAGGG 60.437 66.667 8.66 2.61 0.00 4.30
2081 2394 7.066284 ACAGCACATAGAACATTAATCTTGTCC 59.934 37.037 0.00 0.00 0.00 4.02
2155 2472 6.805271 CCAATGTGAAAGCATCAACTCTTTAG 59.195 38.462 0.00 0.00 40.50 1.85
2232 2549 8.181573 ACGCACAATAGAACAATTTATGTAAGG 58.818 33.333 0.00 0.00 42.99 2.69
2423 2741 2.049888 ATAAGAGCAAGGAAGCTGGC 57.950 50.000 0.00 0.00 46.75 4.85
2425 2743 2.751259 TGCAATAAGAGCAAGGAAGCTG 59.249 45.455 0.00 0.00 46.75 4.24
2518 2836 6.226787 TGAAAAATCATAAACAAATGCCGGT 58.773 32.000 1.90 0.00 0.00 5.28
2521 2839 9.763465 CTCATTGAAAAATCATAAACAAATGCC 57.237 29.630 0.00 0.00 0.00 4.40
2835 3158 6.773976 ACATCACAACCACCAATAATAAGG 57.226 37.500 0.00 0.00 0.00 2.69
2848 3171 5.294060 AGTTGCATTTGAAAACATCACAACC 59.706 36.000 0.00 0.00 39.95 3.77
2859 3182 9.995003 AATACAAATCCTAAGTTGCATTTGAAA 57.005 25.926 16.73 8.96 38.12 2.69
2924 3247 9.733556 ATCAAATGACACAACTACTAATAACCA 57.266 29.630 0.00 0.00 0.00 3.67
2949 3273 9.193806 AGAAATACTCATACAATGGAAAGCAAT 57.806 29.630 0.00 0.00 0.00 3.56
2978 3302 6.335777 AGTGAGAATTGCAAATATGAAAGGC 58.664 36.000 1.71 0.00 0.00 4.35
2991 3315 1.756430 GGGAGGGAAGTGAGAATTGC 58.244 55.000 0.00 0.00 0.00 3.56
3324 3650 9.073475 TGCAGTACAAGGACAAATTTAGTAAAT 57.927 29.630 2.10 2.10 0.00 1.40
3362 3688 7.012044 CCAACATATTTACCTGGTTAGCAGTAC 59.988 40.741 3.84 0.00 0.00 2.73
3623 6044 4.432712 TCATTGTGGATACTGTGATGACG 58.567 43.478 0.00 0.00 37.61 4.35
3638 6059 2.597520 TGCGCATTGAACATCATTGTG 58.402 42.857 5.66 10.02 39.72 3.33
3649 6070 4.155644 TCAACTGTTGAATATGCGCATTGA 59.844 37.500 30.42 19.02 36.59 2.57
3692 6113 0.106708 ACTGGAATGCACTGACACGT 59.893 50.000 0.00 0.00 0.00 4.49
3752 6173 7.849804 ATACATAGTTGATGTCCACAAAGAC 57.150 36.000 0.00 0.00 46.33 3.01
3794 6215 5.419788 AGAAGAACAATCCATAGCATTTGCA 59.580 36.000 5.20 0.00 45.16 4.08
3800 6221 3.118629 AGCGAGAAGAACAATCCATAGCA 60.119 43.478 0.00 0.00 0.00 3.49
3856 6277 2.816087 AGGTCATTTGTTAGCAGCTGTG 59.184 45.455 16.64 2.78 0.00 3.66
3860 6281 2.436417 TGGAGGTCATTTGTTAGCAGC 58.564 47.619 0.00 0.00 0.00 5.25
3862 6283 4.892934 ACTTTTGGAGGTCATTTGTTAGCA 59.107 37.500 0.00 0.00 0.00 3.49
3881 6302 3.418684 AAATCTACACCGCCTCACTTT 57.581 42.857 0.00 0.00 0.00 2.66
3886 6307 5.154222 CAAAAAGAAAATCTACACCGCCTC 58.846 41.667 0.00 0.00 0.00 4.70
3887 6308 4.022329 CCAAAAAGAAAATCTACACCGCCT 60.022 41.667 0.00 0.00 0.00 5.52
3888 6309 4.022676 TCCAAAAAGAAAATCTACACCGCC 60.023 41.667 0.00 0.00 0.00 6.13
3889 6310 5.116069 TCCAAAAAGAAAATCTACACCGC 57.884 39.130 0.00 0.00 0.00 5.68
3890 6311 7.704899 AGTTTTCCAAAAAGAAAATCTACACCG 59.295 33.333 3.07 0.00 44.96 4.94
3891 6312 8.942338 AGTTTTCCAAAAAGAAAATCTACACC 57.058 30.769 3.07 0.00 44.96 4.16
3992 6415 3.951680 TCACTGCTTATAGTCATCGGTGA 59.048 43.478 0.00 0.00 39.78 4.02
4011 6438 1.275291 TCAGAAGATGACGGGGTTCAC 59.725 52.381 0.00 0.00 31.12 3.18
4012 6439 1.639722 TCAGAAGATGACGGGGTTCA 58.360 50.000 0.00 0.00 31.12 3.18
4022 6449 4.799678 ACTACAACACTCGTCAGAAGATG 58.200 43.478 0.00 0.00 0.00 2.90
4023 6450 5.938710 TCTACTACAACACTCGTCAGAAGAT 59.061 40.000 0.00 0.00 0.00 2.40
4024 6451 5.303165 TCTACTACAACACTCGTCAGAAGA 58.697 41.667 0.00 0.00 0.00 2.87
4025 6452 5.608676 TCTACTACAACACTCGTCAGAAG 57.391 43.478 0.00 0.00 0.00 2.85
4028 6455 6.313164 TGTCTATCTACTACAACACTCGTCAG 59.687 42.308 0.00 0.00 0.00 3.51
4030 6457 6.456718 GGTGTCTATCTACTACAACACTCGTC 60.457 46.154 0.00 0.00 37.67 4.20
4031 6458 5.353678 GGTGTCTATCTACTACAACACTCGT 59.646 44.000 0.00 0.00 37.67 4.18
4033 6460 5.220815 CGGGTGTCTATCTACTACAACACTC 60.221 48.000 0.00 0.00 37.67 3.51
4034 6461 4.639310 CGGGTGTCTATCTACTACAACACT 59.361 45.833 0.00 0.00 37.67 3.55
4054 6554 4.184629 GCTTAGCATGATAACTATCCGGG 58.815 47.826 0.00 0.00 31.71 5.73
4056 6556 4.820897 TGGCTTAGCATGATAACTATCCG 58.179 43.478 6.53 0.00 31.71 4.18
4059 6559 7.093552 CCTCTACTGGCTTAGCATGATAACTAT 60.094 40.741 6.53 0.00 0.00 2.12
4065 6565 3.323403 GTCCTCTACTGGCTTAGCATGAT 59.677 47.826 6.53 0.00 0.00 2.45
4075 6575 2.158943 GGTACATTGGTCCTCTACTGGC 60.159 54.545 0.00 0.00 0.00 4.85
4076 6576 3.104512 TGGTACATTGGTCCTCTACTGG 58.895 50.000 0.00 0.00 0.00 4.00
4077 6577 4.819105 TTGGTACATTGGTCCTCTACTG 57.181 45.455 0.00 0.00 39.30 2.74
4091 6592 2.159366 CGGCAGTTGTTGTTTTGGTACA 60.159 45.455 0.00 0.00 0.00 2.90
4092 6593 2.097791 TCGGCAGTTGTTGTTTTGGTAC 59.902 45.455 0.00 0.00 0.00 3.34
4093 6594 2.366533 TCGGCAGTTGTTGTTTTGGTA 58.633 42.857 0.00 0.00 0.00 3.25
4095 6596 2.507339 ATCGGCAGTTGTTGTTTTGG 57.493 45.000 0.00 0.00 0.00 3.28
4096 6597 3.420576 CGTTATCGGCAGTTGTTGTTTTG 59.579 43.478 0.00 0.00 0.00 2.44
4098 6599 2.873472 TCGTTATCGGCAGTTGTTGTTT 59.127 40.909 0.00 0.00 37.69 2.83
4101 6602 2.333926 TCTCGTTATCGGCAGTTGTTG 58.666 47.619 0.00 0.00 37.69 3.33
4103 6604 2.288579 TGTTCTCGTTATCGGCAGTTGT 60.289 45.455 0.00 0.00 37.69 3.32
4108 6609 1.068402 TCGTTGTTCTCGTTATCGGCA 60.068 47.619 0.00 0.00 37.69 5.69
4115 6616 2.667481 TGTTTTCGTCGTTGTTCTCGTT 59.333 40.909 0.00 0.00 0.00 3.85
4120 6621 5.319232 TCTATGTGTTTTCGTCGTTGTTC 57.681 39.130 0.00 0.00 0.00 3.18
4123 6624 4.435518 CCCATCTATGTGTTTTCGTCGTTG 60.436 45.833 0.00 0.00 0.00 4.10
4125 6626 3.259064 CCCATCTATGTGTTTTCGTCGT 58.741 45.455 0.00 0.00 0.00 4.34
4126 6627 2.607635 CCCCATCTATGTGTTTTCGTCG 59.392 50.000 0.00 0.00 0.00 5.12
4127 6628 3.869065 TCCCCATCTATGTGTTTTCGTC 58.131 45.455 0.00 0.00 0.00 4.20
4128 6629 3.370527 CCTCCCCATCTATGTGTTTTCGT 60.371 47.826 0.00 0.00 0.00 3.85
4129 6630 3.118408 TCCTCCCCATCTATGTGTTTTCG 60.118 47.826 0.00 0.00 0.00 3.46
4130 6631 4.503714 TCCTCCCCATCTATGTGTTTTC 57.496 45.455 0.00 0.00 0.00 2.29
4131 6632 4.141158 GGATCCTCCCCATCTATGTGTTTT 60.141 45.833 3.84 0.00 0.00 2.43
4132 6633 3.395941 GGATCCTCCCCATCTATGTGTTT 59.604 47.826 3.84 0.00 0.00 2.83
4133 6634 2.982488 GGATCCTCCCCATCTATGTGTT 59.018 50.000 3.84 0.00 0.00 3.32
4134 6635 2.089982 TGGATCCTCCCCATCTATGTGT 60.090 50.000 14.23 0.00 35.03 3.72
4135 6636 2.570752 CTGGATCCTCCCCATCTATGTG 59.429 54.545 14.23 0.00 35.03 3.21
4136 6637 2.913203 CTGGATCCTCCCCATCTATGT 58.087 52.381 14.23 0.00 35.03 2.29
4137 6638 1.558756 GCTGGATCCTCCCCATCTATG 59.441 57.143 14.23 0.00 35.03 2.23
4138 6639 1.556713 GGCTGGATCCTCCCCATCTAT 60.557 57.143 14.23 0.00 35.03 1.98
4160 6661 4.321230 GGGTTTTGCCTAGTTCATGTCTTG 60.321 45.833 0.00 0.00 37.43 3.02
4172 6673 1.074889 GTCCTCCAAGGGTTTTGCCTA 59.925 52.381 0.00 0.00 35.59 3.93
4173 6674 0.178961 GTCCTCCAAGGGTTTTGCCT 60.179 55.000 0.00 0.00 35.59 4.75
4185 6686 3.936203 GTGTGCGGTGGTCCTCCA 61.936 66.667 10.58 0.00 42.05 3.86
4187 6688 3.509137 TTCGTGTGCGGTGGTCCTC 62.509 63.158 0.00 0.00 38.89 3.71
4188 6689 3.542676 TTCGTGTGCGGTGGTCCT 61.543 61.111 0.00 0.00 38.89 3.85
4189 6690 3.343421 GTTCGTGTGCGGTGGTCC 61.343 66.667 0.00 0.00 38.89 4.46
4190 6691 3.698463 CGTTCGTGTGCGGTGGTC 61.698 66.667 0.00 0.00 38.89 4.02
4196 6697 4.191485 GATCGGCGTTCGTGTGCG 62.191 66.667 6.85 0.00 40.32 5.34
4197 6698 4.191485 CGATCGGCGTTCGTGTGC 62.191 66.667 26.93 0.00 40.32 4.57
4231 6743 7.439356 CAGAATTAGCTCGGTTGATATCTTTGA 59.561 37.037 3.98 0.00 0.00 2.69
4240 6752 2.760634 TGCAGAATTAGCTCGGTTGA 57.239 45.000 0.00 0.00 0.00 3.18
4248 6760 4.060900 TCGATGGATCTTGCAGAATTAGC 58.939 43.478 0.00 0.00 0.00 3.09
4250 6762 5.755375 GTCTTCGATGGATCTTGCAGAATTA 59.245 40.000 0.00 0.00 0.00 1.40
4257 6769 2.898705 ACTGTCTTCGATGGATCTTGC 58.101 47.619 0.00 0.00 0.00 4.01
4267 6779 1.202486 GGTGTGTGGAACTGTCTTCGA 60.202 52.381 0.00 0.00 38.04 3.71
4269 6781 1.141053 AGGGTGTGTGGAACTGTCTTC 59.859 52.381 0.00 0.00 38.04 2.87
4276 6788 1.347707 TCATCAGAGGGTGTGTGGAAC 59.652 52.381 0.00 0.00 37.35 3.62
4277 6789 1.728323 TCATCAGAGGGTGTGTGGAA 58.272 50.000 0.00 0.00 0.00 3.53
4285 6797 4.080299 GGTGGTCTAAAATCATCAGAGGGT 60.080 45.833 0.00 0.00 0.00 4.34
4286 6798 4.080356 TGGTGGTCTAAAATCATCAGAGGG 60.080 45.833 0.00 0.00 0.00 4.30
4288 6800 6.825213 TCAATGGTGGTCTAAAATCATCAGAG 59.175 38.462 0.00 0.00 0.00 3.35
4289 6801 6.720309 TCAATGGTGGTCTAAAATCATCAGA 58.280 36.000 0.00 0.00 0.00 3.27
4290 6802 7.395190 TTCAATGGTGGTCTAAAATCATCAG 57.605 36.000 0.00 0.00 0.00 2.90
4291 6803 7.232330 TGTTTCAATGGTGGTCTAAAATCATCA 59.768 33.333 0.00 0.00 0.00 3.07
4292 6804 7.601856 TGTTTCAATGGTGGTCTAAAATCATC 58.398 34.615 0.00 0.00 0.00 2.92
4294 6806 6.015519 CCTGTTTCAATGGTGGTCTAAAATCA 60.016 38.462 0.00 0.00 0.00 2.57
4295 6807 6.015434 ACCTGTTTCAATGGTGGTCTAAAATC 60.015 38.462 0.00 0.00 32.16 2.17
4296 6808 5.838521 ACCTGTTTCAATGGTGGTCTAAAAT 59.161 36.000 0.00 0.00 32.16 1.82
4299 6811 4.447138 ACCTGTTTCAATGGTGGTCTAA 57.553 40.909 0.00 0.00 32.16 2.10
4300 6812 4.447138 AACCTGTTTCAATGGTGGTCTA 57.553 40.909 0.00 0.00 33.89 2.59
4302 6814 3.506067 CCTAACCTGTTTCAATGGTGGTC 59.494 47.826 0.00 0.00 33.89 4.02
4303 6815 3.496331 CCTAACCTGTTTCAATGGTGGT 58.504 45.455 0.00 0.00 33.89 4.16
4304 6816 2.231235 GCCTAACCTGTTTCAATGGTGG 59.769 50.000 0.00 0.00 33.89 4.61
4305 6817 2.095263 CGCCTAACCTGTTTCAATGGTG 60.095 50.000 0.00 0.00 33.89 4.17
4306 6818 2.159382 CGCCTAACCTGTTTCAATGGT 58.841 47.619 0.00 0.00 35.29 3.55
4308 6820 1.472480 CCCGCCTAACCTGTTTCAATG 59.528 52.381 0.00 0.00 0.00 2.82
4309 6821 1.615919 CCCCGCCTAACCTGTTTCAAT 60.616 52.381 0.00 0.00 0.00 2.57
4311 6823 1.128809 TCCCCGCCTAACCTGTTTCA 61.129 55.000 0.00 0.00 0.00 2.69
4312 6824 0.037160 TTCCCCGCCTAACCTGTTTC 59.963 55.000 0.00 0.00 0.00 2.78
4314 6826 0.479378 TTTTCCCCGCCTAACCTGTT 59.521 50.000 0.00 0.00 0.00 3.16
4318 6830 0.251474 AAGGTTTTCCCCGCCTAACC 60.251 55.000 0.00 0.00 41.86 2.85
4319 6831 2.495155 TAAGGTTTTCCCCGCCTAAC 57.505 50.000 0.00 0.00 41.86 2.34
4320 6832 3.743092 AATAAGGTTTTCCCCGCCTAA 57.257 42.857 0.00 0.00 41.86 2.69
4321 6833 3.743092 AAATAAGGTTTTCCCCGCCTA 57.257 42.857 0.00 0.00 41.86 3.93
4322 6834 2.615986 AAATAAGGTTTTCCCCGCCT 57.384 45.000 0.00 0.00 41.86 5.52
4323 6835 4.647853 AGATAAAATAAGGTTTTCCCCGCC 59.352 41.667 0.00 0.00 41.86 6.13
4324 6836 5.847111 AGATAAAATAAGGTTTTCCCCGC 57.153 39.130 0.00 0.00 41.86 6.13
4325 6837 7.094118 TGTGAAGATAAAATAAGGTTTTCCCCG 60.094 37.037 0.00 0.00 41.86 5.73
4326 6838 8.033038 GTGTGAAGATAAAATAAGGTTTTCCCC 58.967 37.037 0.00 0.00 41.86 4.81
4327 6839 7.753580 CGTGTGAAGATAAAATAAGGTTTTCCC 59.246 37.037 0.00 0.00 41.86 3.97
4328 6840 7.272731 GCGTGTGAAGATAAAATAAGGTTTTCC 59.727 37.037 0.00 0.00 41.05 3.13
4329 6841 7.272731 GGCGTGTGAAGATAAAATAAGGTTTTC 59.727 37.037 0.00 0.00 0.00 2.29
4330 6842 7.088272 GGCGTGTGAAGATAAAATAAGGTTTT 58.912 34.615 0.00 0.00 0.00 2.43
4331 6843 6.349860 GGGCGTGTGAAGATAAAATAAGGTTT 60.350 38.462 0.00 0.00 0.00 3.27
4332 6844 5.124936 GGGCGTGTGAAGATAAAATAAGGTT 59.875 40.000 0.00 0.00 0.00 3.50
4333 6845 4.638865 GGGCGTGTGAAGATAAAATAAGGT 59.361 41.667 0.00 0.00 0.00 3.50
4334 6846 4.881850 AGGGCGTGTGAAGATAAAATAAGG 59.118 41.667 0.00 0.00 0.00 2.69
4335 6847 5.007724 GGAGGGCGTGTGAAGATAAAATAAG 59.992 44.000 0.00 0.00 0.00 1.73
4336 6848 4.879545 GGAGGGCGTGTGAAGATAAAATAA 59.120 41.667 0.00 0.00 0.00 1.40
4337 6849 4.448210 GGAGGGCGTGTGAAGATAAAATA 58.552 43.478 0.00 0.00 0.00 1.40
4338 6850 3.279434 GGAGGGCGTGTGAAGATAAAAT 58.721 45.455 0.00 0.00 0.00 1.82
4339 6851 2.706890 GGAGGGCGTGTGAAGATAAAA 58.293 47.619 0.00 0.00 0.00 1.52
4340 6852 1.404986 CGGAGGGCGTGTGAAGATAAA 60.405 52.381 0.00 0.00 0.00 1.40
4341 6853 0.174845 CGGAGGGCGTGTGAAGATAA 59.825 55.000 0.00 0.00 0.00 1.75
4342 6854 0.681887 TCGGAGGGCGTGTGAAGATA 60.682 55.000 0.00 0.00 0.00 1.98
4343 6855 1.982395 TCGGAGGGCGTGTGAAGAT 60.982 57.895 0.00 0.00 0.00 2.40
4344 6856 2.599281 TCGGAGGGCGTGTGAAGA 60.599 61.111 0.00 0.00 0.00 2.87
4355 6867 1.153369 AATGGTGCATCGTCGGAGG 60.153 57.895 0.00 0.00 0.00 4.30
4372 6884 1.933284 TGCCTAGCCCCCATTCCAA 60.933 57.895 0.00 0.00 0.00 3.53
4380 6892 1.691195 GGTTCTCTCTGCCTAGCCCC 61.691 65.000 0.00 0.00 0.00 5.80
4381 6893 0.689412 AGGTTCTCTCTGCCTAGCCC 60.689 60.000 0.00 0.00 0.00 5.19
4398 6910 7.170828 GCTTTTGTTAGGGTTTGTGAAATAAGG 59.829 37.037 0.00 0.00 0.00 2.69
4404 6916 5.407407 TTGCTTTTGTTAGGGTTTGTGAA 57.593 34.783 0.00 0.00 0.00 3.18
4405 6917 5.407407 TTTGCTTTTGTTAGGGTTTGTGA 57.593 34.783 0.00 0.00 0.00 3.58
4410 6948 5.046231 TGTTTCCTTTGCTTTTGTTAGGGTT 60.046 36.000 0.00 0.00 0.00 4.11
4428 6966 6.096423 GGAGGGGTATGTTTTTAGATGTTTCC 59.904 42.308 0.00 0.00 0.00 3.13
4449 6987 4.785453 GACCCTTGCTGCGGGAGG 62.785 72.222 18.04 13.23 44.90 4.30
4450 6988 2.359169 TAGACCCTTGCTGCGGGAG 61.359 63.158 18.04 5.23 44.90 4.30
4453 6991 2.125106 GGTAGACCCTTGCTGCGG 60.125 66.667 0.00 0.00 0.00 5.69
4454 6992 1.741770 GTGGTAGACCCTTGCTGCG 60.742 63.158 0.00 0.00 34.29 5.18
4455 6993 1.741770 CGTGGTAGACCCTTGCTGC 60.742 63.158 0.00 0.00 34.29 5.25
4456 6994 1.741770 GCGTGGTAGACCCTTGCTG 60.742 63.158 0.00 0.00 33.07 4.41
4457 6995 2.663196 GCGTGGTAGACCCTTGCT 59.337 61.111 0.00 0.00 33.07 3.91
4458 6996 2.436115 GGCGTGGTAGACCCTTGC 60.436 66.667 0.00 0.00 34.48 4.01
4459 6997 2.267961 GGGCGTGGTAGACCCTTG 59.732 66.667 0.00 0.00 40.75 3.61
4463 7001 3.087906 ATGGGGGCGTGGTAGACC 61.088 66.667 0.00 0.00 39.05 3.85
4464 7002 2.189521 CATGGGGGCGTGGTAGAC 59.810 66.667 0.00 0.00 0.00 2.59
4465 7003 3.087253 CCATGGGGGCGTGGTAGA 61.087 66.667 2.85 0.00 0.00 2.59
4478 7043 2.034066 ACCTTGTGTCGGGCCATG 59.966 61.111 4.39 0.00 0.00 3.66
4479 7044 2.034066 CACCTTGTGTCGGGCCAT 59.966 61.111 4.39 0.00 0.00 4.40
4480 7045 4.263572 CCACCTTGTGTCGGGCCA 62.264 66.667 4.39 0.00 0.00 5.36
4482 7047 2.668550 GTCCACCTTGTGTCGGGC 60.669 66.667 0.00 0.00 0.00 6.13
4484 7049 2.357034 CGGTCCACCTTGTGTCGG 60.357 66.667 0.00 0.00 0.00 4.79
4485 7050 3.041940 GCGGTCCACCTTGTGTCG 61.042 66.667 0.00 0.00 0.00 4.35
4486 7051 2.668550 GGCGGTCCACCTTGTGTC 60.669 66.667 0.00 0.00 0.00 3.67
4517 7108 4.269523 TTGTGCCGCTGCCTCCTT 62.270 61.111 0.00 0.00 36.33 3.36
4525 7116 0.255890 ATTATGGACCTTGTGCCGCT 59.744 50.000 0.00 0.00 0.00 5.52
4531 7122 6.405397 GCAACCGAATTAATTATGGACCTTGT 60.405 38.462 20.37 0.65 0.00 3.16
4532 7123 5.977129 GCAACCGAATTAATTATGGACCTTG 59.023 40.000 20.37 15.78 0.00 3.61
4533 7124 5.068591 GGCAACCGAATTAATTATGGACCTT 59.931 40.000 20.37 6.68 0.00 3.50
4563 7173 4.773323 AATTCTAGCCTGTTTTGAGCAC 57.227 40.909 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.