Multiple sequence alignment - TraesCS6A01G223600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G223600 chr6A 100.000 3476 0 0 1 3476 420411646 420408171 0.000000e+00 6420
1 TraesCS6A01G223600 chr6D 96.862 2549 70 5 748 3291 299055443 299057986 0.000000e+00 4255
2 TraesCS6A01G223600 chr6D 93.778 450 24 3 301 748 299054872 299055319 0.000000e+00 673
3 TraesCS6A01G223600 chr6D 93.750 128 5 2 148 273 299054754 299054880 4.580000e-44 189
4 TraesCS6A01G223600 chr6D 88.811 143 15 1 1 143 299054488 299054629 1.280000e-39 174
5 TraesCS6A01G223600 chr6B 97.541 2074 41 4 897 2968 462134096 462136161 0.000000e+00 3539
6 TraesCS6A01G223600 chr6B 93.093 333 17 3 2964 3291 462138089 462138420 1.880000e-132 483
7 TraesCS6A01G223600 chr6B 86.621 441 36 12 324 747 462133287 462133721 1.890000e-127 466
8 TraesCS6A01G223600 chr6B 91.848 184 15 0 3293 3476 75279811 75279628 1.240000e-64 257
9 TraesCS6A01G223600 chr6B 98.246 114 2 0 146 259 462133161 462133274 2.120000e-47 200
10 TraesCS6A01G223600 chr6B 81.283 187 15 7 748 916 462133897 462134081 2.180000e-27 134
11 TraesCS6A01G223600 chr7A 93.617 188 11 1 3289 3476 518810578 518810764 2.640000e-71 279
12 TraesCS6A01G223600 chr2A 92.935 184 13 0 3293 3476 757334888 757335071 5.720000e-68 268
13 TraesCS6A01G223600 chr2A 92.935 184 13 0 3293 3476 757364736 757364553 5.720000e-68 268
14 TraesCS6A01G223600 chr3D 89.011 182 20 0 3295 3476 38373101 38372920 3.490000e-55 226
15 TraesCS6A01G223600 chr2D 89.444 180 8 3 3297 3476 638816830 638816662 2.100000e-52 217
16 TraesCS6A01G223600 chr2B 82.320 181 8 4 3296 3476 798141462 798141306 6.050000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G223600 chr6A 420408171 420411646 3475 True 6420.00 6420 100.00000 1 3476 1 chr6A.!!$R1 3475
1 TraesCS6A01G223600 chr6D 299054488 299057986 3498 False 1322.75 4255 93.30025 1 3291 4 chr6D.!!$F1 3290
2 TraesCS6A01G223600 chr6B 462133161 462138420 5259 False 964.40 3539 91.35680 146 3291 5 chr6B.!!$F1 3145

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
542 673 0.108585 GGACAAGGGCAACACTCAGA 59.891 55.0 0.0 0.0 39.74 3.27 F
1245 1610 0.252467 CCTTCTCCCTCCACTCCTGT 60.252 60.0 0.0 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1488 1853 1.300963 GTTCCTCTCAGGCATGGCA 59.699 57.895 22.64 0.0 34.61 4.92 R
3237 5540 1.207570 AGCTTCTCTCATGACAGCCTG 59.792 52.381 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 5.422970 TGCAAGCAAGGGAAAAATATCTCAT 59.577 36.000 0.00 0.00 0.00 2.90
116 117 5.222171 TGGTAGGCATGGGTAGTTAAAAAGT 60.222 40.000 0.00 0.00 0.00 2.66
119 120 5.144832 AGGCATGGGTAGTTAAAAAGTGTT 58.855 37.500 0.00 0.00 0.00 3.32
127 128 6.369615 GGGTAGTTAAAAAGTGTTCATCGCTA 59.630 38.462 0.00 0.00 35.67 4.26
143 144 7.800155 TCATCGCTATTTATTCACCAATTCA 57.200 32.000 0.00 0.00 0.00 2.57
144 145 7.639039 TCATCGCTATTTATTCACCAATTCAC 58.361 34.615 0.00 0.00 0.00 3.18
259 380 3.942829 TCTTCTCAACCACCATAAGCAG 58.057 45.455 0.00 0.00 0.00 4.24
260 381 3.582647 TCTTCTCAACCACCATAAGCAGA 59.417 43.478 0.00 0.00 0.00 4.26
261 382 4.225942 TCTTCTCAACCACCATAAGCAGAT 59.774 41.667 0.00 0.00 0.00 2.90
262 383 4.574674 TCTCAACCACCATAAGCAGATT 57.425 40.909 0.00 0.00 0.00 2.40
263 384 5.692115 TCTCAACCACCATAAGCAGATTA 57.308 39.130 0.00 0.00 0.00 1.75
316 437 1.137513 GTATGATAACTCGGCCGCAC 58.862 55.000 23.51 8.12 0.00 5.34
319 440 1.808390 GATAACTCGGCCGCACGTT 60.808 57.895 23.51 23.62 34.94 3.99
331 452 1.674441 CCGCACGTTCTATCCAGACTA 59.326 52.381 0.00 0.00 0.00 2.59
334 455 3.436496 GCACGTTCTATCCAGACTACAC 58.564 50.000 0.00 0.00 0.00 2.90
357 481 4.143263 CGCATGGCATTTGTTTTCTTCTTC 60.143 41.667 0.00 0.00 0.00 2.87
447 574 1.135139 ACAGTGCCGATAGCTGTACAG 59.865 52.381 18.93 18.93 41.12 2.74
541 672 0.179020 TGGACAAGGGCAACACTCAG 60.179 55.000 0.00 0.00 39.74 3.35
542 673 0.108585 GGACAAGGGCAACACTCAGA 59.891 55.000 0.00 0.00 39.74 3.27
570 701 4.204799 CTGCATCCCATTCTCATCAGAAA 58.795 43.478 0.00 0.00 42.14 2.52
660 796 2.601804 ACACTTGCACAAAACGGTTTC 58.398 42.857 6.57 0.00 0.00 2.78
679 815 1.772453 TCGTTCTTGGGGGAAAGAGTT 59.228 47.619 0.00 0.00 37.48 3.01
688 824 5.649970 TGGGGGAAAGAGTTGTTTACTTA 57.350 39.130 0.00 0.00 37.17 2.24
799 1113 0.746659 GCTGGCTCAGTTGGTTTTGT 59.253 50.000 4.45 0.00 33.43 2.83
987 1352 1.890894 CCGGTCCTACCTGTCAGTG 59.109 63.158 0.00 0.00 35.66 3.66
989 1354 1.215647 GGTCCTACCTGTCAGTGCG 59.784 63.158 0.00 0.00 34.73 5.34
1245 1610 0.252467 CCTTCTCCCTCCACTCCTGT 60.252 60.000 0.00 0.00 0.00 4.00
1288 1653 4.200283 CGAGCCTCCTCCACTCGC 62.200 72.222 0.00 0.00 45.67 5.03
1488 1853 1.429463 GTGCGAGTTGGTTCTTCGAT 58.571 50.000 0.00 0.00 0.00 3.59
1623 1988 1.064946 CTCGTGGAGCTCGATGGTC 59.935 63.158 16.80 0.00 42.07 4.02
1965 2330 0.684153 GCAGGGAAATGCAGGCCTTA 60.684 55.000 0.00 0.00 45.77 2.69
2157 2522 0.609151 TTGATTTACTCGGTCGGGCA 59.391 50.000 0.00 0.00 0.00 5.36
2170 2535 0.616395 TCGGGCAGGTCATGTTAGGA 60.616 55.000 0.00 0.00 0.00 2.94
2298 2663 3.695060 AGATTGCCAAGAAGCTCATTGAG 59.305 43.478 9.40 9.40 0.00 3.02
2424 2789 4.366684 GTCCCCAAGGGCACTGGG 62.367 72.222 14.67 14.67 43.94 4.45
2495 2860 6.405619 GGTTAGTATTCCTGTAGACAGTGACC 60.406 46.154 8.78 2.26 42.27 4.02
2510 2875 1.618837 GTGACCTGTCAGGAGCTTACA 59.381 52.381 26.18 11.52 40.75 2.41
2522 2887 1.377333 GCTTACAGACTGGGTGGCC 60.377 63.158 7.51 0.00 0.00 5.36
2574 2939 5.117355 AGACATCATTGTGCTGAAACAAG 57.883 39.130 3.35 0.00 42.99 3.16
2653 3018 2.957680 TGCACACTGAAATCAACATGGT 59.042 40.909 0.00 0.00 0.00 3.55
2656 3021 2.030893 ACACTGAAATCAACATGGTGCG 60.031 45.455 5.66 0.00 0.00 5.34
2746 3111 5.994250 AGCTCAGAAAATATGCACCTAAGA 58.006 37.500 0.00 0.00 0.00 2.10
2982 5280 9.567848 TCAAAGTTTCTGACATTTTAACAGAAC 57.432 29.630 0.00 0.00 45.87 3.01
3064 5362 7.001674 TCCTAAGTTGGCTGTTTGATTTAGAA 58.998 34.615 0.00 0.00 0.00 2.10
3187 5485 3.486043 CGAAACAAACGTGTCCATGACAA 60.486 43.478 0.00 0.00 44.49 3.18
3188 5486 3.414549 AACAAACGTGTCCATGACAAC 57.585 42.857 0.00 0.00 44.49 3.32
3199 5502 3.568007 GTCCATGACAACCTTGCAACTTA 59.432 43.478 0.00 0.00 32.09 2.24
3207 5510 6.322712 TGACAACCTTGCAACTTACCTATTTT 59.677 34.615 0.00 0.00 0.00 1.82
3237 5540 2.030823 TGCGATCATGCGAATCAAAGAC 59.969 45.455 0.00 0.00 37.81 3.01
3291 5594 9.869757 CCTTGGTTTTCCTTTTTATATACTTGG 57.130 33.333 0.00 0.00 41.38 3.61
3292 5595 9.869757 CTTGGTTTTCCTTTTTATATACTTGGG 57.130 33.333 0.00 0.00 41.38 4.12
3293 5596 7.842982 TGGTTTTCCTTTTTATATACTTGGGC 58.157 34.615 0.00 0.00 41.38 5.36
3294 5597 7.093245 TGGTTTTCCTTTTTATATACTTGGGCC 60.093 37.037 0.00 0.00 41.38 5.80
3295 5598 6.702716 TTTCCTTTTTATATACTTGGGCCG 57.297 37.500 0.00 0.00 0.00 6.13
3296 5599 4.139038 TCCTTTTTATATACTTGGGCCGC 58.861 43.478 0.00 0.00 0.00 6.53
3297 5600 3.254903 CCTTTTTATATACTTGGGCCGCC 59.745 47.826 0.00 0.00 0.00 6.13
3298 5601 3.579534 TTTTATATACTTGGGCCGCCA 57.420 42.857 12.58 0.00 0.00 5.69
3299 5602 2.851263 TTATATACTTGGGCCGCCAG 57.149 50.000 12.58 3.21 0.00 4.85
3300 5603 2.018355 TATATACTTGGGCCGCCAGA 57.982 50.000 12.58 0.00 0.00 3.86
3301 5604 1.136828 ATATACTTGGGCCGCCAGAA 58.863 50.000 12.58 2.20 0.00 3.02
3302 5605 0.468226 TATACTTGGGCCGCCAGAAG 59.532 55.000 12.58 14.46 0.00 2.85
3303 5606 1.271840 ATACTTGGGCCGCCAGAAGA 61.272 55.000 21.60 9.78 0.00 2.87
3304 5607 1.485294 TACTTGGGCCGCCAGAAGAA 61.485 55.000 21.60 3.08 0.00 2.52
3305 5608 2.034066 TTGGGCCGCCAGAAGAAG 59.966 61.111 12.58 0.00 0.00 2.85
3306 5609 4.722700 TGGGCCGCCAGAAGAAGC 62.723 66.667 12.58 0.00 0.00 3.86
3309 5612 4.722700 GCCGCCAGAAGAAGCCCA 62.723 66.667 0.00 0.00 0.00 5.36
3310 5613 2.034066 CCGCCAGAAGAAGCCCAA 59.966 61.111 0.00 0.00 0.00 4.12
3311 5614 2.042831 CCGCCAGAAGAAGCCCAAG 61.043 63.158 0.00 0.00 0.00 3.61
3312 5615 1.302832 CGCCAGAAGAAGCCCAAGT 60.303 57.895 0.00 0.00 0.00 3.16
3313 5616 1.580845 CGCCAGAAGAAGCCCAAGTG 61.581 60.000 0.00 0.00 0.00 3.16
3314 5617 1.871126 GCCAGAAGAAGCCCAAGTGC 61.871 60.000 0.00 0.00 0.00 4.40
3315 5618 0.251077 CCAGAAGAAGCCCAAGTGCT 60.251 55.000 0.00 0.00 45.43 4.40
3321 5624 2.282745 AGCCCAAGTGCTTCAGCC 60.283 61.111 0.00 0.00 38.85 4.85
3322 5625 2.282745 GCCCAAGTGCTTCAGCCT 60.283 61.111 0.00 0.00 41.18 4.58
3323 5626 2.633509 GCCCAAGTGCTTCAGCCTG 61.634 63.158 0.00 0.00 41.18 4.85
3324 5627 2.633509 CCCAAGTGCTTCAGCCTGC 61.634 63.158 0.00 0.00 41.18 4.85
3325 5628 1.900016 CCAAGTGCTTCAGCCTGCA 60.900 57.895 0.00 0.00 41.18 4.41
3326 5629 1.579932 CAAGTGCTTCAGCCTGCAG 59.420 57.895 6.78 6.78 40.06 4.41
3327 5630 0.887836 CAAGTGCTTCAGCCTGCAGA 60.888 55.000 17.39 0.00 40.06 4.26
3328 5631 0.179009 AAGTGCTTCAGCCTGCAGAA 60.179 50.000 17.39 0.00 40.06 3.02
3329 5632 0.888285 AGTGCTTCAGCCTGCAGAAC 60.888 55.000 17.39 6.97 40.06 3.01
3330 5633 1.148949 TGCTTCAGCCTGCAGAACA 59.851 52.632 17.39 0.00 41.18 3.18
3331 5634 0.887836 TGCTTCAGCCTGCAGAACAG 60.888 55.000 17.39 3.92 46.77 3.16
3332 5635 3.259222 TGCTTCAGCCTGCAGAACAGA 62.259 52.381 17.39 6.50 46.81 3.41
3333 5636 4.712238 TGCTTCAGCCTGCAGAACAGAA 62.712 50.000 17.39 13.87 46.81 3.02
3343 5646 4.305989 TGCAGAACAGAACAAACATTCC 57.694 40.909 0.00 0.00 0.00 3.01
3344 5647 3.953612 TGCAGAACAGAACAAACATTCCT 59.046 39.130 0.00 0.00 0.00 3.36
3345 5648 5.129634 TGCAGAACAGAACAAACATTCCTA 58.870 37.500 0.00 0.00 0.00 2.94
3346 5649 5.239306 TGCAGAACAGAACAAACATTCCTAG 59.761 40.000 0.00 0.00 0.00 3.02
3347 5650 5.693814 CAGAACAGAACAAACATTCCTAGC 58.306 41.667 0.00 0.00 0.00 3.42
3348 5651 5.239306 CAGAACAGAACAAACATTCCTAGCA 59.761 40.000 0.00 0.00 0.00 3.49
3349 5652 5.827797 AGAACAGAACAAACATTCCTAGCAA 59.172 36.000 0.00 0.00 0.00 3.91
3350 5653 5.438761 ACAGAACAAACATTCCTAGCAAC 57.561 39.130 0.00 0.00 0.00 4.17
3351 5654 4.887071 ACAGAACAAACATTCCTAGCAACA 59.113 37.500 0.00 0.00 0.00 3.33
3352 5655 5.009010 ACAGAACAAACATTCCTAGCAACAG 59.991 40.000 0.00 0.00 0.00 3.16
3353 5656 3.923017 ACAAACATTCCTAGCAACAGC 57.077 42.857 0.00 0.00 0.00 4.40
3354 5657 3.490348 ACAAACATTCCTAGCAACAGCT 58.510 40.909 0.00 0.00 42.33 4.24
3355 5658 3.891366 ACAAACATTCCTAGCAACAGCTT 59.109 39.130 0.00 0.00 39.77 3.74
3356 5659 4.232221 CAAACATTCCTAGCAACAGCTTG 58.768 43.478 0.00 0.00 39.77 4.01
3357 5660 3.423539 ACATTCCTAGCAACAGCTTGA 57.576 42.857 0.00 0.00 39.77 3.02
3358 5661 3.754965 ACATTCCTAGCAACAGCTTGAA 58.245 40.909 0.00 0.34 39.77 2.69
3359 5662 4.338879 ACATTCCTAGCAACAGCTTGAAT 58.661 39.130 0.00 2.67 38.28 2.57
3360 5663 5.500234 ACATTCCTAGCAACAGCTTGAATA 58.500 37.500 11.82 0.00 36.94 1.75
3361 5664 5.945784 ACATTCCTAGCAACAGCTTGAATAA 59.054 36.000 11.82 1.51 36.94 1.40
3362 5665 6.434028 ACATTCCTAGCAACAGCTTGAATAAA 59.566 34.615 11.82 0.00 36.94 1.40
3363 5666 7.123247 ACATTCCTAGCAACAGCTTGAATAAAT 59.877 33.333 11.82 3.06 36.94 1.40
3364 5667 8.623903 CATTCCTAGCAACAGCTTGAATAAATA 58.376 33.333 11.82 0.00 36.94 1.40
3365 5668 8.752005 TTCCTAGCAACAGCTTGAATAAATAT 57.248 30.769 0.00 0.00 39.77 1.28
3366 5669 8.158169 TCCTAGCAACAGCTTGAATAAATATG 57.842 34.615 0.00 0.00 39.77 1.78
3367 5670 7.229306 TCCTAGCAACAGCTTGAATAAATATGG 59.771 37.037 0.00 0.00 39.77 2.74
3368 5671 7.229306 CCTAGCAACAGCTTGAATAAATATGGA 59.771 37.037 0.00 0.00 39.77 3.41
3369 5672 7.408756 AGCAACAGCTTGAATAAATATGGAA 57.591 32.000 0.00 0.00 34.18 3.53
3370 5673 8.015185 AGCAACAGCTTGAATAAATATGGAAT 57.985 30.769 0.00 0.00 34.18 3.01
3371 5674 7.924412 AGCAACAGCTTGAATAAATATGGAATG 59.076 33.333 0.00 0.00 34.18 2.67
3372 5675 7.922278 GCAACAGCTTGAATAAATATGGAATGA 59.078 33.333 0.00 0.00 0.00 2.57
3373 5676 9.976511 CAACAGCTTGAATAAATATGGAATGAT 57.023 29.630 0.00 0.00 0.00 2.45
3388 5691 5.268118 GGAATGATTCCTTGATTTGTCCC 57.732 43.478 16.79 0.00 46.57 4.46
3389 5692 4.958581 GGAATGATTCCTTGATTTGTCCCT 59.041 41.667 16.79 0.00 46.57 4.20
3390 5693 5.423290 GGAATGATTCCTTGATTTGTCCCTT 59.577 40.000 16.79 0.00 46.57 3.95
3391 5694 6.607198 GGAATGATTCCTTGATTTGTCCCTTA 59.393 38.462 16.79 0.00 46.57 2.69
3392 5695 7.201857 GGAATGATTCCTTGATTTGTCCCTTAG 60.202 40.741 16.79 0.00 46.57 2.18
3393 5696 6.387192 TGATTCCTTGATTTGTCCCTTAGA 57.613 37.500 0.00 0.00 0.00 2.10
3394 5697 6.789268 TGATTCCTTGATTTGTCCCTTAGAA 58.211 36.000 0.00 0.00 0.00 2.10
3395 5698 7.237982 TGATTCCTTGATTTGTCCCTTAGAAA 58.762 34.615 0.00 0.00 0.00 2.52
3396 5699 7.895429 TGATTCCTTGATTTGTCCCTTAGAAAT 59.105 33.333 0.00 0.00 33.95 2.17
3397 5700 9.408648 GATTCCTTGATTTGTCCCTTAGAAATA 57.591 33.333 0.00 0.00 31.55 1.40
3398 5701 8.575649 TTCCTTGATTTGTCCCTTAGAAATAC 57.424 34.615 0.00 0.00 31.55 1.89
3399 5702 7.928873 TCCTTGATTTGTCCCTTAGAAATACT 58.071 34.615 0.00 0.00 31.55 2.12
3400 5703 8.047310 TCCTTGATTTGTCCCTTAGAAATACTC 58.953 37.037 0.00 0.00 31.55 2.59
3401 5704 7.283354 CCTTGATTTGTCCCTTAGAAATACTCC 59.717 40.741 0.00 0.00 31.55 3.85
3402 5705 6.346096 TGATTTGTCCCTTAGAAATACTCCG 58.654 40.000 0.00 0.00 31.55 4.63
3403 5706 6.155565 TGATTTGTCCCTTAGAAATACTCCGA 59.844 38.462 0.00 0.00 31.55 4.55
3404 5707 6.363167 TTTGTCCCTTAGAAATACTCCGAA 57.637 37.500 0.00 0.00 0.00 4.30
3405 5708 6.363167 TTGTCCCTTAGAAATACTCCGAAA 57.637 37.500 0.00 0.00 0.00 3.46
3406 5709 5.974108 TGTCCCTTAGAAATACTCCGAAAG 58.026 41.667 0.00 0.00 0.00 2.62
3407 5710 5.718130 TGTCCCTTAGAAATACTCCGAAAGA 59.282 40.000 0.00 0.00 0.00 2.52
3420 5723 3.873910 TCCGAAAGAGGCTTTATCTTGG 58.126 45.455 0.00 0.00 37.10 3.61
3421 5724 2.356069 CCGAAAGAGGCTTTATCTTGGC 59.644 50.000 0.00 0.00 37.10 4.52
3422 5725 3.274288 CGAAAGAGGCTTTATCTTGGCT 58.726 45.455 0.00 0.00 41.87 4.75
3423 5726 4.442706 CGAAAGAGGCTTTATCTTGGCTA 58.557 43.478 0.00 0.00 39.23 3.93
3424 5727 4.876107 CGAAAGAGGCTTTATCTTGGCTAA 59.124 41.667 0.00 0.00 39.23 3.09
3425 5728 5.220681 CGAAAGAGGCTTTATCTTGGCTAAC 60.221 44.000 0.00 0.00 39.23 2.34
3426 5729 5.443230 AAGAGGCTTTATCTTGGCTAACT 57.557 39.130 0.00 0.00 39.23 2.24
3427 5730 6.561519 AAGAGGCTTTATCTTGGCTAACTA 57.438 37.500 0.00 0.00 39.23 2.24
3428 5731 6.755542 AGAGGCTTTATCTTGGCTAACTAT 57.244 37.500 0.00 0.00 39.23 2.12
3429 5732 7.857404 AGAGGCTTTATCTTGGCTAACTATA 57.143 36.000 0.00 0.00 39.23 1.31
3430 5733 7.902087 AGAGGCTTTATCTTGGCTAACTATAG 58.098 38.462 0.00 0.00 39.23 1.31
3431 5734 7.010339 AGGCTTTATCTTGGCTAACTATAGG 57.990 40.000 4.43 0.00 37.32 2.57
3432 5735 6.787957 AGGCTTTATCTTGGCTAACTATAGGA 59.212 38.462 4.43 0.00 37.32 2.94
3433 5736 7.459444 AGGCTTTATCTTGGCTAACTATAGGAT 59.541 37.037 4.43 0.00 37.32 3.24
3434 5737 8.103935 GGCTTTATCTTGGCTAACTATAGGATT 58.896 37.037 4.43 0.00 0.00 3.01
3435 5738 8.940952 GCTTTATCTTGGCTAACTATAGGATTG 58.059 37.037 4.43 0.00 0.00 2.67
3440 5743 7.386851 TCTTGGCTAACTATAGGATTGTATGC 58.613 38.462 4.43 0.00 0.00 3.14
3441 5744 5.720202 TGGCTAACTATAGGATTGTATGCG 58.280 41.667 4.43 0.00 0.00 4.73
3442 5745 5.479027 TGGCTAACTATAGGATTGTATGCGA 59.521 40.000 4.43 0.00 0.00 5.10
3443 5746 5.805994 GGCTAACTATAGGATTGTATGCGAC 59.194 44.000 4.43 0.00 0.00 5.19
3444 5747 6.387465 GCTAACTATAGGATTGTATGCGACA 58.613 40.000 4.43 0.00 35.78 4.35
3445 5748 7.036220 GCTAACTATAGGATTGTATGCGACAT 58.964 38.462 4.43 0.00 38.07 3.06
3446 5749 7.221067 GCTAACTATAGGATTGTATGCGACATC 59.779 40.741 4.43 0.00 38.07 3.06
3447 5750 6.842437 ACTATAGGATTGTATGCGACATCT 57.158 37.500 4.43 0.00 38.07 2.90
3448 5751 7.939784 ACTATAGGATTGTATGCGACATCTA 57.060 36.000 4.43 0.00 38.07 1.98
3449 5752 8.526667 ACTATAGGATTGTATGCGACATCTAT 57.473 34.615 4.43 11.02 38.07 1.98
3450 5753 9.628500 ACTATAGGATTGTATGCGACATCTATA 57.372 33.333 4.43 5.05 38.07 1.31
3455 5758 7.869937 AGGATTGTATGCGACATCTATATATGC 59.130 37.037 0.00 0.00 38.07 3.14
3456 5759 7.869937 GGATTGTATGCGACATCTATATATGCT 59.130 37.037 0.00 0.00 38.07 3.79
3457 5760 9.899226 GATTGTATGCGACATCTATATATGCTA 57.101 33.333 0.00 0.00 38.07 3.49
3459 5762 9.736023 TTGTATGCGACATCTATATATGCTAAG 57.264 33.333 0.00 0.00 38.07 2.18
3460 5763 9.120538 TGTATGCGACATCTATATATGCTAAGA 57.879 33.333 0.00 0.00 31.20 2.10
3461 5764 9.952188 GTATGCGACATCTATATATGCTAAGAA 57.048 33.333 0.00 0.00 0.00 2.52
3463 5766 8.689251 TGCGACATCTATATATGCTAAGAAAC 57.311 34.615 0.00 0.00 0.00 2.78
3464 5767 7.759886 TGCGACATCTATATATGCTAAGAAACC 59.240 37.037 0.00 0.00 0.00 3.27
3465 5768 7.976734 GCGACATCTATATATGCTAAGAAACCT 59.023 37.037 0.00 0.00 0.00 3.50
3466 5769 9.295214 CGACATCTATATATGCTAAGAAACCTG 57.705 37.037 0.00 0.00 0.00 4.00
3467 5770 9.092876 GACATCTATATATGCTAAGAAACCTGC 57.907 37.037 0.00 0.00 0.00 4.85
3468 5771 8.597167 ACATCTATATATGCTAAGAAACCTGCA 58.403 33.333 0.00 0.00 39.83 4.41
3469 5772 9.610705 CATCTATATATGCTAAGAAACCTGCAT 57.389 33.333 0.00 0.00 46.22 3.96
3470 5773 9.610705 ATCTATATATGCTAAGAAACCTGCATG 57.389 33.333 9.21 0.00 44.52 4.06
3471 5774 8.815912 TCTATATATGCTAAGAAACCTGCATGA 58.184 33.333 9.21 0.00 44.52 3.07
3472 5775 9.610705 CTATATATGCTAAGAAACCTGCATGAT 57.389 33.333 9.21 5.70 44.52 2.45
3473 5776 4.913335 ATGCTAAGAAACCTGCATGATG 57.087 40.909 0.00 0.00 43.41 3.07
3474 5777 3.954200 TGCTAAGAAACCTGCATGATGA 58.046 40.909 0.00 0.00 0.00 2.92
3475 5778 4.334552 TGCTAAGAAACCTGCATGATGAA 58.665 39.130 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 8.719645 AAGGATAACATAAGCTGTCTCTAGAT 57.280 34.615 0.00 0.00 36.98 1.98
11 12 7.661536 TGTAAGGATAACATAAGCTGTCTCT 57.338 36.000 0.00 0.00 36.98 3.10
14 15 8.894768 ATCTTGTAAGGATAACATAAGCTGTC 57.105 34.615 0.00 0.00 36.98 3.51
29 30 6.694411 GCAGCAAAATCACATATCTTGTAAGG 59.306 38.462 0.00 0.00 36.57 2.69
71 72 7.437713 ACCACCTAGATGATTTTGTATGAGA 57.562 36.000 0.00 0.00 0.00 3.27
76 77 5.427157 TGCCTACCACCTAGATGATTTTGTA 59.573 40.000 0.00 0.00 0.00 2.41
116 117 6.993786 TTGGTGAATAAATAGCGATGAACA 57.006 33.333 0.00 0.00 0.00 3.18
119 120 7.498900 AGTGAATTGGTGAATAAATAGCGATGA 59.501 33.333 0.00 0.00 0.00 2.92
131 132 8.364142 GCTCTATCTACTAGTGAATTGGTGAAT 58.636 37.037 5.39 0.00 0.00 2.57
133 134 7.063593 AGCTCTATCTACTAGTGAATTGGTGA 58.936 38.462 5.39 0.00 0.00 4.02
134 135 7.013750 TGAGCTCTATCTACTAGTGAATTGGTG 59.986 40.741 16.19 0.00 0.00 4.17
143 144 7.201875 GCTTTTCCTTGAGCTCTATCTACTAGT 60.202 40.741 16.19 0.00 36.01 2.57
144 145 7.145323 GCTTTTCCTTGAGCTCTATCTACTAG 58.855 42.308 16.19 5.06 36.01 2.57
246 367 7.749666 AGTTATCATAATCTGCTTATGGTGGT 58.250 34.615 10.39 0.50 44.62 4.16
279 400 6.735678 TCATACTCTGCTAATTCGCAAAAA 57.264 33.333 6.10 0.00 39.80 1.94
280 401 6.925610 ATCATACTCTGCTAATTCGCAAAA 57.074 33.333 6.10 0.00 39.80 2.44
281 402 7.710907 AGTTATCATACTCTGCTAATTCGCAAA 59.289 33.333 6.10 0.00 39.80 3.68
282 403 7.210174 AGTTATCATACTCTGCTAATTCGCAA 58.790 34.615 6.10 0.00 39.80 4.85
283 404 6.749139 AGTTATCATACTCTGCTAATTCGCA 58.251 36.000 4.42 4.42 38.40 5.10
284 405 6.032985 CGAGTTATCATACTCTGCTAATTCGC 59.967 42.308 0.00 0.00 38.19 4.70
285 406 6.524933 CCGAGTTATCATACTCTGCTAATTCG 59.475 42.308 0.00 6.71 41.47 3.34
286 407 6.309251 GCCGAGTTATCATACTCTGCTAATTC 59.691 42.308 11.34 0.00 45.93 2.17
287 408 6.159988 GCCGAGTTATCATACTCTGCTAATT 58.840 40.000 11.34 0.00 45.93 1.40
288 409 5.715070 GCCGAGTTATCATACTCTGCTAAT 58.285 41.667 11.34 0.00 45.93 1.73
289 410 5.122512 GCCGAGTTATCATACTCTGCTAA 57.877 43.478 11.34 0.00 45.93 3.09
290 411 4.768130 GCCGAGTTATCATACTCTGCTA 57.232 45.455 11.34 0.00 45.93 3.49
291 412 3.651803 GCCGAGTTATCATACTCTGCT 57.348 47.619 11.34 0.00 45.93 4.24
295 416 1.000607 TGCGGCCGAGTTATCATACTC 60.001 52.381 33.48 6.45 40.90 2.59
297 418 1.137513 GTGCGGCCGAGTTATCATAC 58.862 55.000 33.48 7.30 0.00 2.39
299 420 1.591594 CGTGCGGCCGAGTTATCAT 60.592 57.895 33.48 0.00 0.00 2.45
309 430 1.883084 CTGGATAGAACGTGCGGCC 60.883 63.158 0.00 0.00 0.00 6.13
313 434 3.436496 GTGTAGTCTGGATAGAACGTGC 58.564 50.000 0.00 0.00 34.01 5.34
316 437 2.096980 TGCGTGTAGTCTGGATAGAACG 59.903 50.000 0.00 0.00 36.82 3.95
319 440 2.623416 CCATGCGTGTAGTCTGGATAGA 59.377 50.000 4.96 0.00 0.00 1.98
331 452 2.134346 GAAAACAAATGCCATGCGTGT 58.866 42.857 4.96 0.00 0.00 4.49
334 455 3.319755 AGAAGAAAACAAATGCCATGCG 58.680 40.909 0.00 0.00 0.00 4.73
416 543 1.550072 TCGGCACTGTCATCATCTTCA 59.450 47.619 0.00 0.00 0.00 3.02
447 574 2.027745 TCTTGGATGCTCTTGAGGTGTC 60.028 50.000 0.00 0.00 0.00 3.67
541 672 3.181447 TGAGAATGGGATGCAGGAAGATC 60.181 47.826 0.00 0.00 0.00 2.75
542 673 2.781757 TGAGAATGGGATGCAGGAAGAT 59.218 45.455 0.00 0.00 0.00 2.40
660 796 1.880027 CAACTCTTTCCCCCAAGAACG 59.120 52.381 0.00 0.00 32.24 3.95
679 815 9.263538 TCGCAGAAAAGAATAAGTAAGTAAACA 57.736 29.630 0.00 0.00 0.00 2.83
688 824 4.843728 TCCCATCGCAGAAAAGAATAAGT 58.156 39.130 0.00 0.00 43.58 2.24
765 1079 1.136147 CAGCCTGCGAATTCTGCAC 59.864 57.895 17.16 10.94 37.44 4.57
772 1086 2.124819 CTGAGCCAGCCTGCGAAT 60.125 61.111 0.00 0.00 36.02 3.34
799 1113 5.709631 TCATACATTTTTGGCACAGCTTCTA 59.290 36.000 0.00 0.00 42.39 2.10
877 1208 0.253894 TCCACATGCAGCTGCTACAT 59.746 50.000 36.61 21.13 42.66 2.29
989 1354 3.329542 TTCGCCATGGGAGAGCACC 62.330 63.158 15.13 0.00 32.27 5.01
1488 1853 1.300963 GTTCCTCTCAGGCATGGCA 59.699 57.895 22.64 0.00 34.61 4.92
1623 1988 2.740055 GACTGCACGAGCCCAGTG 60.740 66.667 1.39 0.10 42.01 3.66
2157 2522 2.026822 CACTGCCTTCCTAACATGACCT 60.027 50.000 0.00 0.00 0.00 3.85
2170 2535 3.030291 TGTTGACAAAATCCACTGCCTT 58.970 40.909 0.00 0.00 0.00 4.35
2298 2663 4.864334 CCATGACGGGGCTCCAGC 62.864 72.222 1.96 0.00 41.14 4.85
2316 2681 1.330655 ACAGGAGGATGTACCGGCTG 61.331 60.000 0.00 0.00 44.74 4.85
2495 2860 2.094286 CCAGTCTGTAAGCTCCTGACAG 60.094 54.545 18.97 14.94 41.62 3.51
2510 2875 2.608988 CCTCAGGCCACCCAGTCT 60.609 66.667 5.01 0.00 0.00 3.24
2653 3018 1.303561 AGGATTTTGCAGCTCCGCA 60.304 52.632 0.00 0.00 41.03 5.69
2656 3021 1.538047 TGACAGGATTTTGCAGCTCC 58.462 50.000 0.00 3.71 0.00 4.70
2746 3111 6.633500 ATTACAAATATGCATGCCGTAGTT 57.367 33.333 16.68 10.84 0.00 2.24
2805 3170 3.947612 ATGAACCTGAGCCTCATGATT 57.052 42.857 3.87 0.00 0.00 2.57
2992 5290 2.142292 AACGAGGCCCCAAGCTGAAT 62.142 55.000 0.00 0.00 43.05 2.57
3064 5362 9.147732 GGAAAATTTACCCATAGGATTCAATCT 57.852 33.333 0.00 0.00 36.73 2.40
3122 5420 7.436933 ACAAATGAATCTTTCCAAGAGGTTTC 58.563 34.615 0.00 0.00 41.61 2.78
3187 5485 6.097696 ACACAAAAATAGGTAAGTTGCAAGGT 59.902 34.615 0.00 0.00 0.00 3.50
3188 5486 6.512297 ACACAAAAATAGGTAAGTTGCAAGG 58.488 36.000 0.00 0.00 0.00 3.61
3199 5502 6.276847 TGATCGCAAAAACACAAAAATAGGT 58.723 32.000 0.00 0.00 0.00 3.08
3207 5510 2.049959 CGCATGATCGCAAAAACACAA 58.950 42.857 0.00 0.00 0.00 3.33
3237 5540 1.207570 AGCTTCTCTCATGACAGCCTG 59.792 52.381 0.00 0.00 0.00 4.85
3292 5595 4.722700 TGGGCTTCTTCTGGCGGC 62.723 66.667 0.00 0.00 0.00 6.53
3293 5596 2.034066 TTGGGCTTCTTCTGGCGG 59.966 61.111 0.00 0.00 0.00 6.13
3294 5597 1.302832 ACTTGGGCTTCTTCTGGCG 60.303 57.895 0.00 0.00 0.00 5.69
3295 5598 1.871126 GCACTTGGGCTTCTTCTGGC 61.871 60.000 0.00 0.00 0.00 4.85
3296 5599 0.251077 AGCACTTGGGCTTCTTCTGG 60.251 55.000 0.00 0.00 42.71 3.86
3297 5600 3.336122 AGCACTTGGGCTTCTTCTG 57.664 52.632 0.00 0.00 42.71 3.02
3305 5608 2.282745 AGGCTGAAGCACTTGGGC 60.283 61.111 4.43 0.00 44.36 5.36
3306 5609 2.633509 GCAGGCTGAAGCACTTGGG 61.634 63.158 20.86 0.00 44.36 4.12
3307 5610 1.863662 CTGCAGGCTGAAGCACTTGG 61.864 60.000 20.86 0.00 44.36 3.61
3308 5611 0.887836 TCTGCAGGCTGAAGCACTTG 60.888 55.000 20.86 0.00 44.36 3.16
3309 5612 0.179009 TTCTGCAGGCTGAAGCACTT 60.179 50.000 20.86 0.00 44.36 3.16
3310 5613 0.888285 GTTCTGCAGGCTGAAGCACT 60.888 55.000 20.86 0.00 44.36 4.40
3311 5614 1.168407 TGTTCTGCAGGCTGAAGCAC 61.168 55.000 20.86 18.85 44.36 4.40
3312 5615 0.887836 CTGTTCTGCAGGCTGAAGCA 60.888 55.000 20.86 10.64 44.36 3.91
3313 5616 0.604780 TCTGTTCTGCAGGCTGAAGC 60.605 55.000 20.86 5.88 45.08 3.86
3314 5617 1.534595 GTTCTGTTCTGCAGGCTGAAG 59.465 52.381 20.86 18.83 45.08 3.02
3315 5618 1.134128 TGTTCTGTTCTGCAGGCTGAA 60.134 47.619 20.86 17.88 45.08 3.02
3316 5619 0.469494 TGTTCTGTTCTGCAGGCTGA 59.531 50.000 20.86 13.29 45.08 4.26
3317 5620 1.311859 TTGTTCTGTTCTGCAGGCTG 58.688 50.000 15.13 10.94 45.08 4.85
3318 5621 1.678101 GTTTGTTCTGTTCTGCAGGCT 59.322 47.619 15.13 0.00 45.08 4.58
3319 5622 1.405105 TGTTTGTTCTGTTCTGCAGGC 59.595 47.619 15.13 8.06 45.08 4.85
3320 5623 3.996150 ATGTTTGTTCTGTTCTGCAGG 57.004 42.857 15.13 0.00 45.08 4.85
3321 5624 4.037208 AGGAATGTTTGTTCTGTTCTGCAG 59.963 41.667 7.63 7.63 46.34 4.41
3322 5625 3.953612 AGGAATGTTTGTTCTGTTCTGCA 59.046 39.130 0.00 0.00 0.00 4.41
3323 5626 4.574599 AGGAATGTTTGTTCTGTTCTGC 57.425 40.909 0.00 0.00 0.00 4.26
3324 5627 5.239306 TGCTAGGAATGTTTGTTCTGTTCTG 59.761 40.000 0.00 0.00 0.00 3.02
3325 5628 5.376625 TGCTAGGAATGTTTGTTCTGTTCT 58.623 37.500 0.00 0.00 0.00 3.01
3326 5629 5.689383 TGCTAGGAATGTTTGTTCTGTTC 57.311 39.130 0.00 0.00 0.00 3.18
3327 5630 5.359576 TGTTGCTAGGAATGTTTGTTCTGTT 59.640 36.000 0.00 0.00 0.00 3.16
3328 5631 4.887071 TGTTGCTAGGAATGTTTGTTCTGT 59.113 37.500 0.00 0.00 0.00 3.41
3329 5632 5.437289 TGTTGCTAGGAATGTTTGTTCTG 57.563 39.130 0.00 0.00 0.00 3.02
3330 5633 4.022849 GCTGTTGCTAGGAATGTTTGTTCT 60.023 41.667 0.00 0.00 36.03 3.01
3331 5634 4.229876 GCTGTTGCTAGGAATGTTTGTTC 58.770 43.478 0.00 0.00 36.03 3.18
3332 5635 4.243007 GCTGTTGCTAGGAATGTTTGTT 57.757 40.909 0.00 0.00 36.03 2.83
3333 5636 3.923017 GCTGTTGCTAGGAATGTTTGT 57.077 42.857 0.00 0.00 36.03 2.83
3346 5649 7.922278 TCATTCCATATTTATTCAAGCTGTTGC 59.078 33.333 0.00 0.00 40.05 4.17
3347 5650 9.976511 ATCATTCCATATTTATTCAAGCTGTTG 57.023 29.630 0.00 0.00 34.67 3.33
3367 5670 6.535963 AAGGGACAAATCAAGGAATCATTC 57.464 37.500 0.00 0.00 0.00 2.67
3368 5671 7.413446 TCTAAGGGACAAATCAAGGAATCATT 58.587 34.615 0.00 0.00 0.00 2.57
3369 5672 6.973642 TCTAAGGGACAAATCAAGGAATCAT 58.026 36.000 0.00 0.00 0.00 2.45
3370 5673 6.387192 TCTAAGGGACAAATCAAGGAATCA 57.613 37.500 0.00 0.00 0.00 2.57
3371 5674 7.703058 TTTCTAAGGGACAAATCAAGGAATC 57.297 36.000 0.00 0.00 0.00 2.52
3372 5675 9.190317 GTATTTCTAAGGGACAAATCAAGGAAT 57.810 33.333 0.00 0.00 0.00 3.01
3373 5676 8.390921 AGTATTTCTAAGGGACAAATCAAGGAA 58.609 33.333 0.00 0.00 0.00 3.36
3374 5677 7.928873 AGTATTTCTAAGGGACAAATCAAGGA 58.071 34.615 0.00 0.00 0.00 3.36
3375 5678 7.283354 GGAGTATTTCTAAGGGACAAATCAAGG 59.717 40.741 0.00 0.00 0.00 3.61
3376 5679 7.011482 CGGAGTATTTCTAAGGGACAAATCAAG 59.989 40.741 0.00 0.00 0.00 3.02
3377 5680 6.821665 CGGAGTATTTCTAAGGGACAAATCAA 59.178 38.462 0.00 0.00 0.00 2.57
3378 5681 6.155565 TCGGAGTATTTCTAAGGGACAAATCA 59.844 38.462 0.00 0.00 0.00 2.57
3379 5682 6.579865 TCGGAGTATTTCTAAGGGACAAATC 58.420 40.000 0.00 0.00 0.00 2.17
3380 5683 6.555463 TCGGAGTATTTCTAAGGGACAAAT 57.445 37.500 0.00 0.00 0.00 2.32
3381 5684 6.363167 TTCGGAGTATTTCTAAGGGACAAA 57.637 37.500 0.00 0.00 0.00 2.83
3382 5685 6.211986 TCTTTCGGAGTATTTCTAAGGGACAA 59.788 38.462 0.00 0.00 0.00 3.18
3383 5686 5.718130 TCTTTCGGAGTATTTCTAAGGGACA 59.282 40.000 0.00 0.00 0.00 4.02
3384 5687 6.218108 TCTTTCGGAGTATTTCTAAGGGAC 57.782 41.667 0.00 0.00 0.00 4.46
3385 5688 5.363005 CCTCTTTCGGAGTATTTCTAAGGGA 59.637 44.000 0.00 0.00 40.30 4.20
3386 5689 5.602628 CCTCTTTCGGAGTATTTCTAAGGG 58.397 45.833 0.00 0.00 40.30 3.95
3387 5690 5.051153 GCCTCTTTCGGAGTATTTCTAAGG 58.949 45.833 0.00 0.00 40.30 2.69
3388 5691 5.908341 AGCCTCTTTCGGAGTATTTCTAAG 58.092 41.667 0.00 0.00 40.30 2.18
3389 5692 5.934402 AGCCTCTTTCGGAGTATTTCTAA 57.066 39.130 0.00 0.00 40.30 2.10
3390 5693 5.934402 AAGCCTCTTTCGGAGTATTTCTA 57.066 39.130 0.00 0.00 40.30 2.10
3391 5694 4.828072 AAGCCTCTTTCGGAGTATTTCT 57.172 40.909 0.00 0.00 40.30 2.52
3392 5695 6.987404 AGATAAAGCCTCTTTCGGAGTATTTC 59.013 38.462 0.00 0.00 40.30 2.17
3393 5696 6.890293 AGATAAAGCCTCTTTCGGAGTATTT 58.110 36.000 0.00 0.00 40.30 1.40
3394 5697 6.487299 AGATAAAGCCTCTTTCGGAGTATT 57.513 37.500 0.00 0.00 40.30 1.89
3395 5698 6.284459 CAAGATAAAGCCTCTTTCGGAGTAT 58.716 40.000 0.00 0.00 40.30 2.12
3396 5699 5.395324 CCAAGATAAAGCCTCTTTCGGAGTA 60.395 44.000 0.00 0.00 40.30 2.59
3397 5700 4.508662 CAAGATAAAGCCTCTTTCGGAGT 58.491 43.478 0.00 0.00 40.30 3.85
3398 5701 3.873952 CCAAGATAAAGCCTCTTTCGGAG 59.126 47.826 0.00 0.00 41.51 4.63
3399 5702 3.873910 CCAAGATAAAGCCTCTTTCGGA 58.126 45.455 0.00 0.00 30.60 4.55
3400 5703 2.356069 GCCAAGATAAAGCCTCTTTCGG 59.644 50.000 0.00 0.00 30.60 4.30
3401 5704 3.274288 AGCCAAGATAAAGCCTCTTTCG 58.726 45.455 0.00 0.00 30.60 3.46
3402 5705 5.883115 AGTTAGCCAAGATAAAGCCTCTTTC 59.117 40.000 0.00 0.00 30.60 2.62
3403 5706 5.821097 AGTTAGCCAAGATAAAGCCTCTTT 58.179 37.500 0.00 0.00 30.60 2.52
3404 5707 5.443230 AGTTAGCCAAGATAAAGCCTCTT 57.557 39.130 0.00 0.00 33.25 2.85
3405 5708 6.755542 ATAGTTAGCCAAGATAAAGCCTCT 57.244 37.500 0.00 0.00 0.00 3.69
3406 5709 7.038941 TCCTATAGTTAGCCAAGATAAAGCCTC 60.039 40.741 0.00 0.00 0.00 4.70
3407 5710 6.787957 TCCTATAGTTAGCCAAGATAAAGCCT 59.212 38.462 0.00 0.00 0.00 4.58
3408 5711 7.005709 TCCTATAGTTAGCCAAGATAAAGCC 57.994 40.000 0.00 0.00 0.00 4.35
3409 5712 8.940952 CAATCCTATAGTTAGCCAAGATAAAGC 58.059 37.037 0.00 0.00 0.00 3.51
3414 5717 8.043710 GCATACAATCCTATAGTTAGCCAAGAT 58.956 37.037 0.00 0.00 0.00 2.40
3415 5718 7.386851 GCATACAATCCTATAGTTAGCCAAGA 58.613 38.462 0.00 0.00 0.00 3.02
3416 5719 6.311445 CGCATACAATCCTATAGTTAGCCAAG 59.689 42.308 0.00 0.00 0.00 3.61
3417 5720 6.014925 TCGCATACAATCCTATAGTTAGCCAA 60.015 38.462 0.00 0.00 0.00 4.52
3418 5721 5.479027 TCGCATACAATCCTATAGTTAGCCA 59.521 40.000 0.00 0.00 0.00 4.75
3419 5722 5.805994 GTCGCATACAATCCTATAGTTAGCC 59.194 44.000 0.00 0.00 0.00 3.93
3420 5723 6.387465 TGTCGCATACAATCCTATAGTTAGC 58.613 40.000 0.00 0.00 34.29 3.09
3421 5724 8.462811 AGATGTCGCATACAATCCTATAGTTAG 58.537 37.037 0.00 0.00 42.70 2.34
3422 5725 8.349568 AGATGTCGCATACAATCCTATAGTTA 57.650 34.615 0.00 0.00 42.70 2.24
3423 5726 7.233389 AGATGTCGCATACAATCCTATAGTT 57.767 36.000 0.00 0.00 42.70 2.24
3424 5727 6.842437 AGATGTCGCATACAATCCTATAGT 57.158 37.500 0.00 0.00 42.70 2.12
3429 5732 7.869937 GCATATATAGATGTCGCATACAATCCT 59.130 37.037 9.02 0.00 42.70 3.24
3430 5733 7.869937 AGCATATATAGATGTCGCATACAATCC 59.130 37.037 9.02 0.00 42.70 3.01
3431 5734 8.809159 AGCATATATAGATGTCGCATACAATC 57.191 34.615 9.02 0.00 42.70 2.67
3433 5736 9.736023 CTTAGCATATATAGATGTCGCATACAA 57.264 33.333 9.02 0.00 42.70 2.41
3434 5737 9.120538 TCTTAGCATATATAGATGTCGCATACA 57.879 33.333 9.02 0.00 43.86 2.29
3435 5738 9.952188 TTCTTAGCATATATAGATGTCGCATAC 57.048 33.333 9.02 0.00 0.00 2.39
3437 5740 9.307121 GTTTCTTAGCATATATAGATGTCGCAT 57.693 33.333 9.02 0.00 0.00 4.73
3438 5741 7.759886 GGTTTCTTAGCATATATAGATGTCGCA 59.240 37.037 9.02 0.00 0.00 5.10
3439 5742 7.976734 AGGTTTCTTAGCATATATAGATGTCGC 59.023 37.037 9.02 0.00 0.00 5.19
3440 5743 9.295214 CAGGTTTCTTAGCATATATAGATGTCG 57.705 37.037 9.02 0.00 0.00 4.35
3441 5744 9.092876 GCAGGTTTCTTAGCATATATAGATGTC 57.907 37.037 9.02 2.18 0.00 3.06
3442 5745 8.597167 TGCAGGTTTCTTAGCATATATAGATGT 58.403 33.333 9.02 0.00 31.05 3.06
3443 5746 9.610705 ATGCAGGTTTCTTAGCATATATAGATG 57.389 33.333 2.86 2.86 45.09 2.90
3444 5747 9.610705 CATGCAGGTTTCTTAGCATATATAGAT 57.389 33.333 0.00 0.00 45.14 1.98
3445 5748 8.815912 TCATGCAGGTTTCTTAGCATATATAGA 58.184 33.333 0.00 0.00 45.14 1.98
3446 5749 9.610705 ATCATGCAGGTTTCTTAGCATATATAG 57.389 33.333 0.00 0.00 45.14 1.31
3447 5750 9.387257 CATCATGCAGGTTTCTTAGCATATATA 57.613 33.333 0.00 0.00 45.14 0.86
3448 5751 8.105197 TCATCATGCAGGTTTCTTAGCATATAT 58.895 33.333 0.00 0.00 45.14 0.86
3449 5752 7.452562 TCATCATGCAGGTTTCTTAGCATATA 58.547 34.615 0.00 0.00 45.14 0.86
3450 5753 6.301486 TCATCATGCAGGTTTCTTAGCATAT 58.699 36.000 0.00 0.00 45.14 1.78
3451 5754 5.683681 TCATCATGCAGGTTTCTTAGCATA 58.316 37.500 0.00 0.00 45.14 3.14
3453 5756 3.954200 TCATCATGCAGGTTTCTTAGCA 58.046 40.909 0.00 0.00 41.73 3.49
3454 5757 4.970662 TTCATCATGCAGGTTTCTTAGC 57.029 40.909 0.00 0.00 0.00 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.