Multiple sequence alignment - TraesCS6A01G222800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G222800 chr6A 100.000 6040 0 0 1 6040 416653584 416659623 0.000000e+00 11154.0
1 TraesCS6A01G222800 chr6A 95.597 318 9 5 1687 2001 615490694 615491009 6.990000e-139 505.0
2 TraesCS6A01G222800 chr6A 94.603 315 15 2 1683 1995 30932325 30932639 2.530000e-133 486.0
3 TraesCS6A01G222800 chr6D 94.306 3811 130 30 2274 6038 300891885 300888116 0.000000e+00 5755.0
4 TraesCS6A01G222800 chr6D 91.364 1320 44 29 320 1610 300893528 300892250 0.000000e+00 1742.0
5 TraesCS6A01G222800 chr6D 92.908 282 14 4 1994 2275 300892189 300891914 7.290000e-109 405.0
6 TraesCS6A01G222800 chr6D 88.462 312 17 6 1 308 300893880 300893584 5.760000e-95 359.0
7 TraesCS6A01G222800 chr6D 93.443 61 4 0 1638 1698 300892245 300892185 2.320000e-14 91.6
8 TraesCS6A01G222800 chr6B 96.303 2110 64 3 3087 5195 465677384 465675288 0.000000e+00 3452.0
9 TraesCS6A01G222800 chr6B 89.971 1356 33 39 320 1618 465679869 465678560 0.000000e+00 1655.0
10 TraesCS6A01G222800 chr6B 88.714 824 44 22 2274 3072 465678166 465677367 0.000000e+00 961.0
11 TraesCS6A01G222800 chr6B 90.619 501 20 2 5227 5727 465675290 465674817 1.840000e-179 640.0
12 TraesCS6A01G222800 chr6B 90.964 332 13 6 5710 6038 465674800 465674483 1.200000e-116 431.0
13 TraesCS6A01G222800 chr6B 88.535 314 15 7 1 308 465680223 465679925 1.600000e-95 361.0
14 TraesCS6A01G222800 chr6B 85.623 313 14 4 1994 2275 465678507 465678195 3.540000e-77 300.0
15 TraesCS6A01G222800 chr6B 89.024 82 4 3 115 194 465680035 465679957 4.980000e-16 97.1
16 TraesCS6A01G222800 chr2A 82.283 1761 298 12 3291 5044 624458796 624460549 0.000000e+00 1511.0
17 TraesCS6A01G222800 chr2A 81.403 1753 312 13 3293 5038 197565798 197564053 0.000000e+00 1419.0
18 TraesCS6A01G222800 chr2A 96.721 305 9 1 1694 1997 706682809 706682505 1.940000e-139 507.0
19 TraesCS6A01G222800 chr2A 95.253 316 13 2 1684 1998 61341708 61341394 3.250000e-137 499.0
20 TraesCS6A01G222800 chr2A 81.390 403 66 6 1001 1400 624394333 624394729 2.720000e-83 320.0
21 TraesCS6A01G222800 chr2A 81.081 407 60 13 1001 1400 624359568 624359964 5.880000e-80 309.0
22 TraesCS6A01G222800 chr2A 80.893 403 68 6 1001 1400 624458285 624458681 5.880000e-80 309.0
23 TraesCS6A01G222800 chr5B 81.473 1765 320 7 3284 5044 641833851 641835612 0.000000e+00 1441.0
24 TraesCS6A01G222800 chr1B 81.580 1759 306 16 3291 5040 28375292 28373543 0.000000e+00 1437.0
25 TraesCS6A01G222800 chr1B 81.559 1757 310 13 3295 5044 148415904 148414155 0.000000e+00 1437.0
26 TraesCS6A01G222800 chr2D 81.549 1756 304 16 3293 5038 156707847 156709592 0.000000e+00 1430.0
27 TraesCS6A01G222800 chr2D 81.327 407 59 13 1001 1400 481599622 481600018 1.260000e-81 315.0
28 TraesCS6A01G222800 chr2D 80.988 405 68 6 999 1400 481961487 481961885 4.550000e-81 313.0
29 TraesCS6A01G222800 chr2D 80.590 407 66 10 999 1400 481688639 481689037 9.840000e-78 302.0
30 TraesCS6A01G222800 chr1D 81.446 1757 312 12 3295 5044 93104785 93103036 0.000000e+00 1426.0
31 TraesCS6A01G222800 chr3A 94.984 319 15 1 1684 2001 6714622 6714940 3.250000e-137 499.0
32 TraesCS6A01G222800 chr3A 94.984 319 15 1 1684 2001 6785087 6785405 3.250000e-137 499.0
33 TraesCS6A01G222800 chr3A 94.671 319 16 1 1684 2001 6725610 6725928 1.510000e-135 494.0
34 TraesCS6A01G222800 chr7A 95.513 312 13 1 1685 1995 539609956 539609645 1.170000e-136 497.0
35 TraesCS6A01G222800 chr4A 96.066 305 11 1 1692 1995 210983141 210983445 4.200000e-136 496.0
36 TraesCS6A01G222800 chr2B 80.941 404 66 8 1001 1400 564920828 564921224 5.880000e-80 309.0
37 TraesCS6A01G222800 chr2B 96.970 33 1 0 876 908 786916589 786916557 8.460000e-04 56.5
38 TraesCS6A01G222800 chr2B 96.970 33 1 0 876 908 786959618 786959586 8.460000e-04 56.5
39 TraesCS6A01G222800 chr4D 97.222 36 1 0 562 597 387000718 387000753 1.820000e-05 62.1
40 TraesCS6A01G222800 chrUn 100.000 28 0 0 882 909 112541489 112541516 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G222800 chr6A 416653584 416659623 6039 False 11154.0000 11154 100.000000 1 6040 1 chr6A.!!$F2 6039
1 TraesCS6A01G222800 chr6D 300888116 300893880 5764 True 1670.5200 5755 92.096600 1 6038 5 chr6D.!!$R1 6037
2 TraesCS6A01G222800 chr6B 465674483 465680223 5740 True 987.1375 3452 89.969125 1 6038 8 chr6B.!!$R1 6037
3 TraesCS6A01G222800 chr2A 197564053 197565798 1745 True 1419.0000 1419 81.403000 3293 5038 1 chr2A.!!$R2 1745
4 TraesCS6A01G222800 chr2A 624458285 624460549 2264 False 910.0000 1511 81.588000 1001 5044 2 chr2A.!!$F3 4043
5 TraesCS6A01G222800 chr5B 641833851 641835612 1761 False 1441.0000 1441 81.473000 3284 5044 1 chr5B.!!$F1 1760
6 TraesCS6A01G222800 chr1B 28373543 28375292 1749 True 1437.0000 1437 81.580000 3291 5040 1 chr1B.!!$R1 1749
7 TraesCS6A01G222800 chr1B 148414155 148415904 1749 True 1437.0000 1437 81.559000 3295 5044 1 chr1B.!!$R2 1749
8 TraesCS6A01G222800 chr2D 156707847 156709592 1745 False 1430.0000 1430 81.549000 3293 5038 1 chr2D.!!$F1 1745
9 TraesCS6A01G222800 chr1D 93103036 93104785 1749 True 1426.0000 1426 81.446000 3295 5044 1 chr1D.!!$R1 1749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
311 318 0.037326 AGAAGATCCGTCGCTTTGCA 60.037 50.0 0.0 0.0 0.00 4.08 F
1657 1832 0.248289 TTAGCTAGGTCGTTGGTGGC 59.752 55.0 0.0 0.0 0.00 5.01 F
1717 1895 0.035820 ATGATACCCCGCACGTTGTT 60.036 50.0 0.0 0.0 0.00 2.83 F
1909 2087 0.106521 GCATGTTGTGGTGGGCTTTT 59.893 50.0 0.0 0.0 0.00 2.27 F
1912 2090 0.107945 TGTTGTGGTGGGCTTTTTGC 60.108 50.0 0.0 0.0 41.94 3.68 F
1913 2091 0.177836 GTTGTGGTGGGCTTTTTGCT 59.822 50.0 0.0 0.0 42.39 3.91 F
4439 4728 0.105964 TGTCTTCCACGTTCCTGGTG 59.894 55.0 0.0 0.0 32.50 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1698 1876 0.035820 AACAACGTGCGGGGTATCAT 60.036 50.0 0.0 0.0 0.00 2.45 R
2524 2775 0.251165 CTAACCCACCACCAACCTGG 60.251 60.0 0.0 0.0 45.02 4.45 R
3269 3558 0.593128 CAAACAGAGGGGAGCAAACG 59.407 55.0 0.0 0.0 0.00 3.60 R
3839 4128 0.323087 TGTGCTCCATGATTGCAGCT 60.323 50.0 0.0 0.0 37.39 4.24 R
3914 4203 0.731417 CCTGCTTCGGCTTCATCAAG 59.269 55.0 0.0 0.0 42.37 3.02 R
4835 5124 1.026718 GGCAGTCCTTGATCCGGTTG 61.027 60.0 0.0 0.0 0.00 3.77 R
5340 5633 0.396435 ACTCTTCGACCCACAATGCA 59.604 50.0 0.0 0.0 0.00 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.730672 GCGGCAGCTTGACACTACG 61.731 63.158 0.00 0.00 41.01 3.51
34 35 2.730672 GCAGCTTGACACTACGGCG 61.731 63.158 4.80 4.80 0.00 6.46
36 37 0.944311 CAGCTTGACACTACGGCGTT 60.944 55.000 21.24 0.00 0.00 4.84
43 44 1.593933 GACACTACGGCGTTGTTTTCA 59.406 47.619 23.62 0.00 0.00 2.69
44 45 1.595794 ACACTACGGCGTTGTTTTCAG 59.404 47.619 23.62 14.59 0.00 3.02
45 46 1.595794 CACTACGGCGTTGTTTTCAGT 59.404 47.619 23.62 13.61 0.00 3.41
50 51 3.054878 ACGGCGTTGTTTTCAGTAGTAG 58.945 45.455 6.77 0.00 0.00 2.57
82 83 0.104671 TTGAGCCCTTTTGCAGCAAC 59.895 50.000 7.54 0.00 0.00 4.17
83 84 1.005748 GAGCCCTTTTGCAGCAACC 60.006 57.895 7.54 0.00 0.00 3.77
84 85 1.747325 GAGCCCTTTTGCAGCAACCA 61.747 55.000 7.54 0.00 0.00 3.67
85 86 1.123246 AGCCCTTTTGCAGCAACCAT 61.123 50.000 7.54 0.00 0.00 3.55
86 87 0.952010 GCCCTTTTGCAGCAACCATG 60.952 55.000 7.54 0.00 0.00 3.66
164 165 0.601311 ACTGCCTGAACTGAACTCGC 60.601 55.000 0.00 0.00 0.00 5.03
196 197 6.954487 TGTACTTAGACAGTTCAGACTTCA 57.046 37.500 0.00 0.00 36.88 3.02
197 198 6.971602 TGTACTTAGACAGTTCAGACTTCAG 58.028 40.000 0.00 0.00 36.88 3.02
198 199 6.771267 TGTACTTAGACAGTTCAGACTTCAGA 59.229 38.462 0.00 0.00 36.88 3.27
199 200 6.079424 ACTTAGACAGTTCAGACTTCAGAC 57.921 41.667 0.00 0.00 32.54 3.51
200 201 5.830991 ACTTAGACAGTTCAGACTTCAGACT 59.169 40.000 0.00 0.00 32.54 3.24
210 211 4.020751 TCAGACTTCAGACTCTGATTTGGG 60.021 45.833 9.63 1.29 40.39 4.12
215 216 3.754965 TCAGACTCTGATTTGGGTTTGG 58.245 45.455 4.50 0.00 35.39 3.28
231 234 3.816523 GGTTTGGTCGACATAACCAGAAA 59.183 43.478 30.62 8.95 46.99 2.52
236 239 3.572584 GTCGACATAACCAGAAACGACT 58.427 45.455 11.55 0.00 42.98 4.18
237 240 4.379813 GGTCGACATAACCAGAAACGACTA 60.380 45.833 18.91 0.00 44.73 2.59
238 241 4.556523 GTCGACATAACCAGAAACGACTAC 59.443 45.833 11.55 0.00 42.98 2.73
308 315 1.546476 ACAGAGAAGATCCGTCGCTTT 59.454 47.619 0.00 0.00 0.00 3.51
309 316 1.923204 CAGAGAAGATCCGTCGCTTTG 59.077 52.381 0.00 0.00 0.00 2.77
310 317 0.647925 GAGAAGATCCGTCGCTTTGC 59.352 55.000 0.00 0.00 0.00 3.68
311 318 0.037326 AGAAGATCCGTCGCTTTGCA 60.037 50.000 0.00 0.00 0.00 4.08
312 319 0.371645 GAAGATCCGTCGCTTTGCAG 59.628 55.000 0.00 0.00 0.00 4.41
344 395 3.967335 CGAGATCTCCGACCGGCC 61.967 72.222 17.13 0.00 34.68 6.13
347 404 3.967335 GATCTCCGACCGGCCTCG 61.967 72.222 0.00 3.96 34.68 4.63
356 413 3.484547 CCGGCCTCGCGTGTAAAC 61.485 66.667 5.77 0.00 34.56 2.01
375 433 1.297664 CTGTAGGTAGAGACGGACGG 58.702 60.000 0.00 0.00 0.00 4.79
524 593 2.650602 CGCACCAACGCAACACAC 60.651 61.111 0.00 0.00 0.00 3.82
570 651 3.204827 GCCCCGCATGCTGTAGTG 61.205 66.667 17.13 0.00 0.00 2.74
576 657 3.521534 GCATGCTGTAGTGCGAATG 57.478 52.632 11.37 0.00 35.36 2.67
577 658 1.009078 GCATGCTGTAGTGCGAATGA 58.991 50.000 11.37 0.00 35.36 2.57
578 659 1.267732 GCATGCTGTAGTGCGAATGAC 60.268 52.381 11.37 0.00 35.36 3.06
579 660 2.001872 CATGCTGTAGTGCGAATGACA 58.998 47.619 0.00 0.00 35.36 3.58
581 662 1.270041 TGCTGTAGTGCGAATGACACA 60.270 47.619 0.00 0.00 40.59 3.72
582 663 2.002586 GCTGTAGTGCGAATGACACAT 58.997 47.619 0.00 0.00 40.59 3.21
583 664 2.222886 GCTGTAGTGCGAATGACACATG 60.223 50.000 0.00 0.00 40.59 3.21
586 667 0.324614 AGTGCGAATGACACATGGGA 59.675 50.000 0.00 0.00 40.59 4.37
587 668 0.447801 GTGCGAATGACACATGGGAC 59.552 55.000 0.00 0.00 37.96 4.46
588 669 0.676466 TGCGAATGACACATGGGACC 60.676 55.000 0.00 0.00 0.00 4.46
589 670 1.705337 GCGAATGACACATGGGACCG 61.705 60.000 0.00 0.00 0.00 4.79
590 671 1.089481 CGAATGACACATGGGACCGG 61.089 60.000 0.00 0.00 0.00 5.28
591 672 0.748005 GAATGACACATGGGACCGGG 60.748 60.000 6.32 0.00 0.00 5.73
592 673 1.497309 AATGACACATGGGACCGGGT 61.497 55.000 6.32 0.00 0.00 5.28
593 674 1.910580 ATGACACATGGGACCGGGTC 61.911 60.000 19.06 19.06 0.00 4.46
879 980 1.447945 GCCTCAAGCTCTTCTTCCAC 58.552 55.000 0.00 0.00 38.99 4.02
890 991 1.565759 CTTCTTCCACCCATCCATCCA 59.434 52.381 0.00 0.00 0.00 3.41
891 992 1.911454 TCTTCCACCCATCCATCCAT 58.089 50.000 0.00 0.00 0.00 3.41
892 993 1.776667 TCTTCCACCCATCCATCCATC 59.223 52.381 0.00 0.00 0.00 3.51
893 994 1.779092 CTTCCACCCATCCATCCATCT 59.221 52.381 0.00 0.00 0.00 2.90
894 995 2.813338 TCCACCCATCCATCCATCTA 57.187 50.000 0.00 0.00 0.00 1.98
895 996 3.296399 TCCACCCATCCATCCATCTAT 57.704 47.619 0.00 0.00 0.00 1.98
896 997 3.184628 TCCACCCATCCATCCATCTATC 58.815 50.000 0.00 0.00 0.00 2.08
897 998 3.181391 TCCACCCATCCATCCATCTATCT 60.181 47.826 0.00 0.00 0.00 1.98
901 1002 5.071519 CACCCATCCATCCATCTATCTATCC 59.928 48.000 0.00 0.00 0.00 2.59
1548 1723 3.443045 CGCCCATGTGCCCTGTTC 61.443 66.667 0.00 0.00 0.00 3.18
1591 1766 3.942130 AGCCCAAAAGGATTCTTTTCG 57.058 42.857 8.88 2.76 46.79 3.46
1610 1785 0.401356 GTTTGGGGTTTCGGGGAGTA 59.599 55.000 0.00 0.00 0.00 2.59
1612 1787 1.374572 TTGGGGTTTCGGGGAGTAAT 58.625 50.000 0.00 0.00 0.00 1.89
1614 1789 2.560080 TGGGGTTTCGGGGAGTAATTA 58.440 47.619 0.00 0.00 0.00 1.40
1615 1790 2.506644 TGGGGTTTCGGGGAGTAATTAG 59.493 50.000 0.00 0.00 0.00 1.73
1616 1791 2.569059 GGGTTTCGGGGAGTAATTAGC 58.431 52.381 0.00 0.00 0.00 3.09
1617 1792 2.172082 GGGTTTCGGGGAGTAATTAGCT 59.828 50.000 0.00 0.00 0.00 3.32
1618 1793 3.371273 GGGTTTCGGGGAGTAATTAGCTT 60.371 47.826 0.00 0.00 0.00 3.74
1619 1794 4.267536 GGTTTCGGGGAGTAATTAGCTTT 58.732 43.478 0.00 0.00 0.00 3.51
1620 1795 4.703575 GGTTTCGGGGAGTAATTAGCTTTT 59.296 41.667 0.00 0.00 0.00 2.27
1621 1796 5.184479 GGTTTCGGGGAGTAATTAGCTTTTT 59.816 40.000 0.00 0.00 0.00 1.94
1657 1832 0.248289 TTAGCTAGGTCGTTGGTGGC 59.752 55.000 0.00 0.00 0.00 5.01
1688 1866 7.418337 ACCCATCAACTAACTGAAACTTTTT 57.582 32.000 0.00 0.00 0.00 1.94
1707 1885 9.682465 AACTTTTTCTAAACTAGATGATACCCC 57.318 33.333 0.00 0.00 34.22 4.95
1708 1886 7.985752 ACTTTTTCTAAACTAGATGATACCCCG 59.014 37.037 0.00 0.00 34.22 5.73
1709 1887 5.464030 TTCTAAACTAGATGATACCCCGC 57.536 43.478 0.00 0.00 34.22 6.13
1710 1888 4.476297 TCTAAACTAGATGATACCCCGCA 58.524 43.478 0.00 0.00 0.00 5.69
1711 1889 3.470645 AAACTAGATGATACCCCGCAC 57.529 47.619 0.00 0.00 0.00 5.34
1712 1890 0.959553 ACTAGATGATACCCCGCACG 59.040 55.000 0.00 0.00 0.00 5.34
1713 1891 0.959553 CTAGATGATACCCCGCACGT 59.040 55.000 0.00 0.00 0.00 4.49
1714 1892 1.340248 CTAGATGATACCCCGCACGTT 59.660 52.381 0.00 0.00 0.00 3.99
1715 1893 0.179084 AGATGATACCCCGCACGTTG 60.179 55.000 0.00 0.00 0.00 4.10
1716 1894 0.461339 GATGATACCCCGCACGTTGT 60.461 55.000 0.00 0.00 0.00 3.32
1717 1895 0.035820 ATGATACCCCGCACGTTGTT 60.036 50.000 0.00 0.00 0.00 2.83
1718 1896 0.951525 TGATACCCCGCACGTTGTTG 60.952 55.000 0.00 0.00 0.00 3.33
1719 1897 2.248274 GATACCCCGCACGTTGTTGC 62.248 60.000 0.00 0.00 39.28 4.17
1725 1903 2.642700 GCACGTTGTTGCGGGAAT 59.357 55.556 0.00 0.00 37.48 3.01
1726 1904 1.870383 GCACGTTGTTGCGGGAATA 59.130 52.632 0.00 0.00 37.48 1.75
1727 1905 0.450184 GCACGTTGTTGCGGGAATAT 59.550 50.000 0.00 0.00 37.48 1.28
1728 1906 1.135517 GCACGTTGTTGCGGGAATATT 60.136 47.619 0.00 0.00 37.48 1.28
1729 1907 2.669950 GCACGTTGTTGCGGGAATATTT 60.670 45.455 0.00 0.00 37.48 1.40
1730 1908 2.914214 CACGTTGTTGCGGGAATATTTG 59.086 45.455 0.00 0.00 37.48 2.32
1731 1909 1.917303 CGTTGTTGCGGGAATATTTGC 59.083 47.619 0.00 0.00 0.00 3.68
1732 1910 2.669670 CGTTGTTGCGGGAATATTTGCA 60.670 45.455 6.81 6.81 35.15 4.08
1733 1911 3.321497 GTTGTTGCGGGAATATTTGCAA 58.679 40.909 15.46 15.46 44.34 4.08
1737 1915 4.991153 TTGCGGGAATATTTGCAATACA 57.009 36.364 15.46 0.00 41.95 2.29
1738 1916 5.528043 TTGCGGGAATATTTGCAATACAT 57.472 34.783 15.46 0.00 41.95 2.29
1739 1917 5.528043 TGCGGGAATATTTGCAATACATT 57.472 34.783 0.00 0.00 33.80 2.71
1740 1918 5.911752 TGCGGGAATATTTGCAATACATTT 58.088 33.333 0.00 0.00 33.80 2.32
1741 1919 5.982516 TGCGGGAATATTTGCAATACATTTC 59.017 36.000 0.00 0.00 33.80 2.17
1742 1920 5.116983 GCGGGAATATTTGCAATACATTTCG 59.883 40.000 0.00 9.37 0.00 3.46
1743 1921 6.434596 CGGGAATATTTGCAATACATTTCGA 58.565 36.000 0.00 0.00 0.00 3.71
1744 1922 7.083858 CGGGAATATTTGCAATACATTTCGAT 58.916 34.615 0.00 0.00 0.00 3.59
1745 1923 7.060979 CGGGAATATTTGCAATACATTTCGATG 59.939 37.037 0.00 0.00 0.00 3.84
1746 1924 7.329226 GGGAATATTTGCAATACATTTCGATGG 59.671 37.037 0.00 0.00 0.00 3.51
1747 1925 7.867403 GGAATATTTGCAATACATTTCGATGGT 59.133 33.333 0.00 0.00 0.00 3.55
1748 1926 9.891828 GAATATTTGCAATACATTTCGATGGTA 57.108 29.630 0.00 0.00 0.00 3.25
1750 1928 9.844790 ATATTTGCAATACATTTCGATGGTATG 57.155 29.630 0.00 1.76 0.00 2.39
1751 1929 6.691754 TTGCAATACATTTCGATGGTATGT 57.308 33.333 0.00 6.57 36.53 2.29
1752 1930 6.058827 TGCAATACATTTCGATGGTATGTG 57.941 37.500 11.11 9.39 34.55 3.21
1753 1931 5.819901 TGCAATACATTTCGATGGTATGTGA 59.180 36.000 11.11 0.85 34.55 3.58
1754 1932 6.486320 TGCAATACATTTCGATGGTATGTGAT 59.514 34.615 11.11 1.30 34.55 3.06
1755 1933 7.013178 TGCAATACATTTCGATGGTATGTGATT 59.987 33.333 11.11 6.42 34.55 2.57
1756 1934 7.862372 GCAATACATTTCGATGGTATGTGATTT 59.138 33.333 11.11 3.28 34.55 2.17
1757 1935 9.385902 CAATACATTTCGATGGTATGTGATTTC 57.614 33.333 11.11 0.00 34.55 2.17
1758 1936 8.908786 ATACATTTCGATGGTATGTGATTTCT 57.091 30.769 11.11 0.00 34.55 2.52
1759 1937 9.996554 ATACATTTCGATGGTATGTGATTTCTA 57.003 29.630 11.11 0.00 34.55 2.10
1760 1938 8.908786 ACATTTCGATGGTATGTGATTTCTAT 57.091 30.769 0.00 0.00 31.66 1.98
1761 1939 8.777413 ACATTTCGATGGTATGTGATTTCTATG 58.223 33.333 0.00 0.00 31.66 2.23
1762 1940 7.728847 TTTCGATGGTATGTGATTTCTATGG 57.271 36.000 0.00 0.00 0.00 2.74
1763 1941 6.664428 TCGATGGTATGTGATTTCTATGGA 57.336 37.500 0.00 0.00 0.00 3.41
1764 1942 7.061566 TCGATGGTATGTGATTTCTATGGAA 57.938 36.000 0.00 0.00 0.00 3.53
1765 1943 6.929049 TCGATGGTATGTGATTTCTATGGAAC 59.071 38.462 0.00 0.00 0.00 3.62
1784 1962 7.576861 TGGAACATGAATAGTGATACTACGA 57.423 36.000 0.00 0.00 32.84 3.43
1785 1963 8.002984 TGGAACATGAATAGTGATACTACGAA 57.997 34.615 0.00 0.00 32.84 3.85
1786 1964 8.471609 TGGAACATGAATAGTGATACTACGAAA 58.528 33.333 0.00 0.00 32.84 3.46
1787 1965 9.309516 GGAACATGAATAGTGATACTACGAAAA 57.690 33.333 0.00 0.00 32.84 2.29
1789 1967 9.871238 AACATGAATAGTGATACTACGAAAACT 57.129 29.630 0.00 0.00 32.84 2.66
1798 1976 8.995220 AGTGATACTACGAAAACTAAAATTGCA 58.005 29.630 0.00 0.00 0.00 4.08
1799 1977 9.601971 GTGATACTACGAAAACTAAAATTGCAA 57.398 29.630 0.00 0.00 0.00 4.08
1804 1982 9.522804 ACTACGAAAACTAAAATTGCAAATTCA 57.477 25.926 1.71 0.00 0.00 2.57
1819 1997 8.774890 TTGCAAATTCATATGCTTTATTGTGT 57.225 26.923 0.00 0.00 42.97 3.72
1820 1998 8.774890 TGCAAATTCATATGCTTTATTGTGTT 57.225 26.923 0.00 0.00 42.97 3.32
1821 1999 9.217278 TGCAAATTCATATGCTTTATTGTGTTT 57.783 25.926 0.00 0.00 42.97 2.83
1822 2000 9.480538 GCAAATTCATATGCTTTATTGTGTTTG 57.519 29.630 0.00 0.00 39.46 2.93
1871 2049 8.677148 ATATATGTTTACATGTTGAGGTGGAC 57.323 34.615 2.30 0.00 37.15 4.02
1872 2050 4.157849 TGTTTACATGTTGAGGTGGACA 57.842 40.909 2.30 0.00 0.00 4.02
1873 2051 4.724399 TGTTTACATGTTGAGGTGGACAT 58.276 39.130 2.30 0.00 36.97 3.06
1874 2052 5.136828 TGTTTACATGTTGAGGTGGACATT 58.863 37.500 2.30 0.00 34.42 2.71
1875 2053 5.596361 TGTTTACATGTTGAGGTGGACATTT 59.404 36.000 2.30 0.00 34.42 2.32
1876 2054 6.097554 TGTTTACATGTTGAGGTGGACATTTT 59.902 34.615 2.30 0.00 34.42 1.82
1877 2055 4.853924 ACATGTTGAGGTGGACATTTTC 57.146 40.909 0.00 0.00 34.42 2.29
1878 2056 4.214310 ACATGTTGAGGTGGACATTTTCA 58.786 39.130 0.00 0.00 34.42 2.69
1879 2057 4.037923 ACATGTTGAGGTGGACATTTTCAC 59.962 41.667 0.00 0.00 34.42 3.18
1880 2058 2.616376 TGTTGAGGTGGACATTTTCACG 59.384 45.455 0.00 0.00 34.93 4.35
1881 2059 2.616842 GTTGAGGTGGACATTTTCACGT 59.383 45.455 0.00 0.00 34.93 4.49
1882 2060 2.217750 TGAGGTGGACATTTTCACGTG 58.782 47.619 9.94 9.94 34.93 4.49
1883 2061 0.951558 AGGTGGACATTTTCACGTGC 59.048 50.000 11.67 0.00 34.93 5.34
1884 2062 0.665835 GGTGGACATTTTCACGTGCA 59.334 50.000 11.67 0.00 34.93 4.57
1885 2063 1.269448 GGTGGACATTTTCACGTGCAT 59.731 47.619 11.67 0.00 35.84 3.96
1886 2064 2.318578 GTGGACATTTTCACGTGCATG 58.681 47.619 11.67 14.63 35.84 4.06
1887 2065 2.031245 GTGGACATTTTCACGTGCATGA 60.031 45.455 21.79 0.00 35.84 3.07
1888 2066 2.620585 TGGACATTTTCACGTGCATGAA 59.379 40.909 21.79 5.70 36.80 2.57
1889 2067 3.255395 TGGACATTTTCACGTGCATGAAT 59.745 39.130 21.79 12.15 38.37 2.57
1890 2068 3.609373 GGACATTTTCACGTGCATGAATG 59.391 43.478 21.79 21.29 38.37 2.67
1903 2081 2.612604 CATGAATGCATGTTGTGGTGG 58.387 47.619 5.39 0.00 45.41 4.61
1904 2082 0.967662 TGAATGCATGTTGTGGTGGG 59.032 50.000 0.00 0.00 0.00 4.61
1905 2083 0.390209 GAATGCATGTTGTGGTGGGC 60.390 55.000 0.00 0.00 0.00 5.36
1906 2084 0.832983 AATGCATGTTGTGGTGGGCT 60.833 50.000 0.00 0.00 0.00 5.19
1907 2085 0.832983 ATGCATGTTGTGGTGGGCTT 60.833 50.000 0.00 0.00 0.00 4.35
1908 2086 1.047596 TGCATGTTGTGGTGGGCTTT 61.048 50.000 0.00 0.00 0.00 3.51
1909 2087 0.106521 GCATGTTGTGGTGGGCTTTT 59.893 50.000 0.00 0.00 0.00 2.27
1910 2088 1.474855 GCATGTTGTGGTGGGCTTTTT 60.475 47.619 0.00 0.00 0.00 1.94
1911 2089 2.211806 CATGTTGTGGTGGGCTTTTTG 58.788 47.619 0.00 0.00 0.00 2.44
1912 2090 0.107945 TGTTGTGGTGGGCTTTTTGC 60.108 50.000 0.00 0.00 41.94 3.68
1913 2091 0.177836 GTTGTGGTGGGCTTTTTGCT 59.822 50.000 0.00 0.00 42.39 3.91
1914 2092 1.410882 GTTGTGGTGGGCTTTTTGCTA 59.589 47.619 0.00 0.00 42.39 3.49
1915 2093 2.008242 TGTGGTGGGCTTTTTGCTAT 57.992 45.000 0.00 0.00 42.39 2.97
1916 2094 1.617850 TGTGGTGGGCTTTTTGCTATG 59.382 47.619 0.00 0.00 42.39 2.23
1917 2095 0.607620 TGGTGGGCTTTTTGCTATGC 59.392 50.000 0.00 0.00 42.39 3.14
1918 2096 0.607620 GGTGGGCTTTTTGCTATGCA 59.392 50.000 0.00 0.00 42.39 3.96
1919 2097 1.207811 GGTGGGCTTTTTGCTATGCAT 59.792 47.619 3.79 3.79 38.76 3.96
1920 2098 2.273557 GTGGGCTTTTTGCTATGCATG 58.726 47.619 10.16 0.26 38.76 4.06
1921 2099 1.901159 TGGGCTTTTTGCTATGCATGT 59.099 42.857 10.16 0.00 38.76 3.21
1922 2100 2.302445 TGGGCTTTTTGCTATGCATGTT 59.698 40.909 10.16 0.00 38.76 2.71
1923 2101 2.674357 GGGCTTTTTGCTATGCATGTTG 59.326 45.455 10.16 0.43 38.76 3.33
1924 2102 2.094734 GGCTTTTTGCTATGCATGTTGC 59.905 45.455 10.16 11.48 42.26 4.17
1925 2103 2.997986 GCTTTTTGCTATGCATGTTGCT 59.002 40.909 10.16 0.00 40.66 3.91
1926 2104 3.434299 GCTTTTTGCTATGCATGTTGCTT 59.566 39.130 10.16 0.00 40.66 3.91
1927 2105 4.668177 GCTTTTTGCTATGCATGTTGCTTG 60.668 41.667 10.16 3.25 40.66 4.01
1928 2106 3.938289 TTTGCTATGCATGTTGCTTGA 57.062 38.095 10.16 0.00 45.31 3.02
1929 2107 4.459390 TTTGCTATGCATGTTGCTTGAT 57.541 36.364 10.16 0.00 45.31 2.57
1930 2108 3.430333 TGCTATGCATGTTGCTTGATG 57.570 42.857 10.16 0.00 45.31 3.07
1931 2109 3.018149 TGCTATGCATGTTGCTTGATGA 58.982 40.909 10.16 0.00 45.31 2.92
1932 2110 3.634910 TGCTATGCATGTTGCTTGATGAT 59.365 39.130 10.16 0.00 45.31 2.45
1933 2111 3.981416 GCTATGCATGTTGCTTGATGATG 59.019 43.478 10.16 0.00 45.31 3.07
1934 2112 4.499188 GCTATGCATGTTGCTTGATGATGT 60.499 41.667 10.16 0.00 45.31 3.06
1935 2113 3.224884 TGCATGTTGCTTGATGATGTG 57.775 42.857 0.75 0.00 45.31 3.21
1936 2114 2.094442 TGCATGTTGCTTGATGATGTGG 60.094 45.455 0.75 0.00 45.31 4.17
1937 2115 2.536365 CATGTTGCTTGATGATGTGGC 58.464 47.619 0.00 0.00 0.00 5.01
1938 2116 1.618487 TGTTGCTTGATGATGTGGCA 58.382 45.000 0.00 0.00 0.00 4.92
1939 2117 2.172679 TGTTGCTTGATGATGTGGCAT 58.827 42.857 0.00 0.00 32.87 4.40
1940 2118 2.094442 TGTTGCTTGATGATGTGGCATG 60.094 45.455 0.00 0.00 32.87 4.06
1941 2119 0.458260 TGCTTGATGATGTGGCATGC 59.542 50.000 9.90 9.90 34.46 4.06
1942 2120 0.744874 GCTTGATGATGTGGCATGCT 59.255 50.000 18.92 0.00 32.10 3.79
1943 2121 1.136305 GCTTGATGATGTGGCATGCTT 59.864 47.619 18.92 0.00 32.10 3.91
1944 2122 2.809446 CTTGATGATGTGGCATGCTTG 58.191 47.619 18.92 0.00 0.00 4.01
1957 2135 3.842732 CATGCTTGCATGTTGAGAGAA 57.157 42.857 23.00 0.00 0.00 2.87
1958 2136 4.168922 CATGCTTGCATGTTGAGAGAAA 57.831 40.909 23.00 0.00 0.00 2.52
1959 2137 4.744570 CATGCTTGCATGTTGAGAGAAAT 58.255 39.130 23.00 0.00 0.00 2.17
1960 2138 5.886992 CATGCTTGCATGTTGAGAGAAATA 58.113 37.500 23.00 0.00 0.00 1.40
1961 2139 6.504398 CATGCTTGCATGTTGAGAGAAATAT 58.496 36.000 23.00 0.00 0.00 1.28
1962 2140 5.886992 TGCTTGCATGTTGAGAGAAATATG 58.113 37.500 1.14 0.00 33.25 1.78
1963 2141 5.416639 TGCTTGCATGTTGAGAGAAATATGT 59.583 36.000 1.14 0.00 32.83 2.29
1964 2142 6.071784 TGCTTGCATGTTGAGAGAAATATGTT 60.072 34.615 1.14 0.00 32.83 2.71
1965 2143 7.121020 TGCTTGCATGTTGAGAGAAATATGTTA 59.879 33.333 1.14 0.00 32.83 2.41
1966 2144 7.970061 GCTTGCATGTTGAGAGAAATATGTTAA 59.030 33.333 1.14 0.00 32.83 2.01
1968 2146 9.791820 TTGCATGTTGAGAGAAATATGTTAATG 57.208 29.630 0.00 0.00 32.83 1.90
1969 2147 8.407832 TGCATGTTGAGAGAAATATGTTAATGG 58.592 33.333 0.00 0.00 32.83 3.16
1970 2148 7.864379 GCATGTTGAGAGAAATATGTTAATGGG 59.136 37.037 0.00 0.00 32.83 4.00
1971 2149 7.880160 TGTTGAGAGAAATATGTTAATGGGG 57.120 36.000 0.00 0.00 0.00 4.96
1972 2150 6.321181 TGTTGAGAGAAATATGTTAATGGGGC 59.679 38.462 0.00 0.00 0.00 5.80
1973 2151 6.266131 TGAGAGAAATATGTTAATGGGGCT 57.734 37.500 0.00 0.00 0.00 5.19
1974 2152 6.064060 TGAGAGAAATATGTTAATGGGGCTG 58.936 40.000 0.00 0.00 0.00 4.85
1975 2153 5.388654 AGAGAAATATGTTAATGGGGCTGG 58.611 41.667 0.00 0.00 0.00 4.85
1976 2154 3.897505 AGAAATATGTTAATGGGGCTGGC 59.102 43.478 0.00 0.00 0.00 4.85
1977 2155 3.618120 AATATGTTAATGGGGCTGGCT 57.382 42.857 0.00 0.00 0.00 4.75
1978 2156 4.740154 AATATGTTAATGGGGCTGGCTA 57.260 40.909 0.00 0.00 0.00 3.93
1979 2157 4.953781 ATATGTTAATGGGGCTGGCTAT 57.046 40.909 0.00 0.00 0.00 2.97
1980 2158 3.618120 ATGTTAATGGGGCTGGCTATT 57.382 42.857 0.00 5.46 0.00 1.73
1981 2159 3.396685 TGTTAATGGGGCTGGCTATTT 57.603 42.857 0.00 0.00 0.00 1.40
1982 2160 4.528076 TGTTAATGGGGCTGGCTATTTA 57.472 40.909 0.00 0.00 0.00 1.40
1983 2161 4.469657 TGTTAATGGGGCTGGCTATTTAG 58.530 43.478 0.00 0.00 0.00 1.85
1984 2162 4.167113 TGTTAATGGGGCTGGCTATTTAGA 59.833 41.667 0.00 0.00 0.00 2.10
1985 2163 5.162991 TGTTAATGGGGCTGGCTATTTAGAT 60.163 40.000 0.00 0.00 0.00 1.98
1986 2164 6.044989 TGTTAATGGGGCTGGCTATTTAGATA 59.955 38.462 0.00 0.00 0.00 1.98
1987 2165 5.803463 AATGGGGCTGGCTATTTAGATAT 57.197 39.130 0.00 0.00 0.00 1.63
1988 2166 6.908526 AATGGGGCTGGCTATTTAGATATA 57.091 37.500 0.00 0.00 0.00 0.86
1989 2167 5.957771 TGGGGCTGGCTATTTAGATATAG 57.042 43.478 0.00 0.00 0.00 1.31
1990 2168 5.599751 TGGGGCTGGCTATTTAGATATAGA 58.400 41.667 0.00 0.00 31.10 1.98
1991 2169 6.029431 TGGGGCTGGCTATTTAGATATAGAA 58.971 40.000 0.00 0.00 31.10 2.10
1992 2170 6.156949 TGGGGCTGGCTATTTAGATATAGAAG 59.843 42.308 0.00 0.00 31.10 2.85
1993 2171 6.384305 GGGGCTGGCTATTTAGATATAGAAGA 59.616 42.308 0.00 0.00 31.10 2.87
1994 2172 7.071824 GGGGCTGGCTATTTAGATATAGAAGAT 59.928 40.741 0.00 0.00 31.10 2.40
1995 2173 8.490311 GGGCTGGCTATTTAGATATAGAAGATT 58.510 37.037 0.00 0.00 31.10 2.40
2000 2178 9.990360 GGCTATTTAGATATAGAAGATTAGGCC 57.010 37.037 0.00 0.00 31.10 5.19
2144 2348 2.960819 ACTGAAGTAGCAACACGATCC 58.039 47.619 0.00 0.00 0.00 3.36
2241 2450 3.196469 TGTTCAGGATCTAGAGCACTTGG 59.804 47.826 10.68 0.00 0.00 3.61
2242 2451 3.107402 TCAGGATCTAGAGCACTTGGT 57.893 47.619 10.68 0.00 0.00 3.67
2297 2536 2.280186 GCCCGCCTAATCACTCCG 60.280 66.667 0.00 0.00 0.00 4.63
2399 2638 1.066430 TGGTCCACCATTACTCGCTTC 60.066 52.381 0.00 0.00 42.01 3.86
2400 2639 1.278238 GTCCACCATTACTCGCTTCG 58.722 55.000 0.00 0.00 0.00 3.79
2401 2640 0.459585 TCCACCATTACTCGCTTCGC 60.460 55.000 0.00 0.00 0.00 4.70
2402 2641 0.460284 CCACCATTACTCGCTTCGCT 60.460 55.000 0.00 0.00 0.00 4.93
2403 2642 1.359848 CACCATTACTCGCTTCGCTT 58.640 50.000 0.00 0.00 0.00 4.68
2404 2643 1.061131 CACCATTACTCGCTTCGCTTG 59.939 52.381 0.00 0.00 0.00 4.01
2434 2673 2.222908 CGCGGCAAGAAGAAAGAAGATC 60.223 50.000 0.00 0.00 0.00 2.75
2465 2704 1.376037 CCTTCTTCACCGACAGCCC 60.376 63.158 0.00 0.00 0.00 5.19
2524 2775 0.229500 CAAAGCTTTTTGTTCGGCGC 59.771 50.000 9.53 0.00 0.00 6.53
2526 2777 2.010582 AAGCTTTTTGTTCGGCGCCA 62.011 50.000 28.98 11.20 0.00 5.69
2547 2798 0.893727 GTTGGTGGTGGGTTAGCTGG 60.894 60.000 0.00 0.00 0.00 4.85
2548 2799 2.075355 TTGGTGGTGGGTTAGCTGGG 62.075 60.000 0.00 0.00 0.00 4.45
2549 2800 2.361230 GTGGTGGGTTAGCTGGGC 60.361 66.667 0.00 0.00 0.00 5.36
2550 2801 2.531685 TGGTGGGTTAGCTGGGCT 60.532 61.111 0.00 0.00 43.41 5.19
2551 2802 2.044946 GGTGGGTTAGCTGGGCTG 60.045 66.667 0.00 0.00 40.10 4.85
2552 2803 2.044946 GTGGGTTAGCTGGGCTGG 60.045 66.667 0.00 0.00 40.10 4.85
2553 2804 4.047125 TGGGTTAGCTGGGCTGGC 62.047 66.667 0.00 0.00 40.10 4.85
2554 2805 3.732849 GGGTTAGCTGGGCTGGCT 61.733 66.667 0.00 9.33 40.10 4.75
2619 2892 6.173724 GCGTAGTTTTATCAATCACACGTAC 58.826 40.000 0.00 0.00 0.00 3.67
2677 2964 2.040544 CGCAAGCCAGGTTAGGTGG 61.041 63.158 0.00 0.00 38.21 4.61
2689 2976 0.820074 TTAGGTGGGGCGTTGTTGTG 60.820 55.000 0.00 0.00 0.00 3.33
2791 3079 1.156736 CAAACCATGTCTCGGTGTCC 58.843 55.000 0.00 0.00 36.67 4.02
2875 3163 0.987294 AAGCATGGGCACAGACTAGT 59.013 50.000 0.00 0.00 44.61 2.57
2876 3164 1.866015 AGCATGGGCACAGACTAGTA 58.134 50.000 0.00 0.00 44.61 1.82
2877 3165 1.482593 AGCATGGGCACAGACTAGTAC 59.517 52.381 0.00 0.00 44.61 2.73
2917 3205 2.406002 ATTTCCACCGACGGCCACTT 62.406 55.000 15.39 0.00 0.00 3.16
2918 3206 2.999739 TTTCCACCGACGGCCACTTC 63.000 60.000 15.39 0.00 0.00 3.01
2919 3207 4.003788 CCACCGACGGCCACTTCT 62.004 66.667 15.39 0.00 0.00 2.85
2923 3211 2.811317 CGACGGCCACTTCTCTGC 60.811 66.667 2.24 0.00 0.00 4.26
2970 3258 2.447887 CGCGCACATCTGACTGACC 61.448 63.158 8.75 0.00 0.00 4.02
3073 3361 1.670811 CAGACTCGGCACAACACTTTT 59.329 47.619 0.00 0.00 0.00 2.27
3074 3362 2.097466 CAGACTCGGCACAACACTTTTT 59.903 45.455 0.00 0.00 0.00 1.94
3075 3363 3.311322 CAGACTCGGCACAACACTTTTTA 59.689 43.478 0.00 0.00 0.00 1.52
3080 3368 5.518487 ACTCGGCACAACACTTTTTATTTTG 59.482 36.000 0.00 0.00 0.00 2.44
3081 3369 5.651530 TCGGCACAACACTTTTTATTTTGA 58.348 33.333 0.00 0.00 0.00 2.69
3104 3392 1.527311 GAAGACTCGGCACAACACTTC 59.473 52.381 0.00 0.00 0.00 3.01
3115 3403 0.386352 CAACACTTCACTGCCATGCG 60.386 55.000 0.00 0.00 0.00 4.73
3155 3443 0.942252 ACGACGGGAAAAAGACAAGC 59.058 50.000 0.00 0.00 0.00 4.01
3218 3507 0.667993 TTTGTTACCAGCAGCAGCAC 59.332 50.000 3.17 0.00 45.49 4.40
3263 3552 2.159627 CGGCAATGACACTACAGGAAAC 59.840 50.000 0.00 0.00 0.00 2.78
3277 3566 0.591659 GGAAACTGACCCGTTTGCTC 59.408 55.000 0.00 0.00 40.62 4.26
3404 3693 2.506065 CCTCCTCCAGGGTTACTCG 58.494 63.158 0.00 0.00 38.91 4.18
3650 3939 2.438075 GAGCTGCAGCCCAAGGAG 60.438 66.667 34.39 0.00 43.38 3.69
3839 4128 1.067295 ACCCTGGACAGATTGAAGCA 58.933 50.000 0.00 0.00 0.00 3.91
4424 4713 7.441760 GCTATTGACATCTTGAAGATCATGTCT 59.558 37.037 21.27 10.06 35.83 3.41
4439 4728 0.105964 TGTCTTCCACGTTCCTGGTG 59.894 55.000 0.00 0.00 32.50 4.17
5053 5342 2.202544 CTGAGCAGCCGACGAGAC 60.203 66.667 0.00 0.00 0.00 3.36
5340 5633 2.363306 TGATGGACACTGGCAGTTTT 57.637 45.000 19.43 7.94 0.00 2.43
5416 5709 2.125753 CTGTCGGTGCCTCTCTGC 60.126 66.667 0.00 0.00 0.00 4.26
5495 5789 2.867472 GTGGCCATCCGTTCAACG 59.133 61.111 9.72 1.89 42.11 4.10
5532 5826 3.181536 CGTGCGAATTCAGACTTTCAGAG 60.182 47.826 6.22 0.00 0.00 3.35
5533 5827 3.743396 GTGCGAATTCAGACTTTCAGAGT 59.257 43.478 6.22 0.00 42.70 3.24
5543 5837 3.357166 ACTTTCAGAGTCACAGTCGTC 57.643 47.619 0.00 0.00 31.20 4.20
5544 5838 2.034812 ACTTTCAGAGTCACAGTCGTCC 59.965 50.000 0.00 0.00 31.20 4.79
5545 5839 1.982660 TTCAGAGTCACAGTCGTCCT 58.017 50.000 0.00 0.00 0.00 3.85
5546 5840 1.524848 TCAGAGTCACAGTCGTCCTC 58.475 55.000 0.00 0.00 0.00 3.71
5547 5841 0.523966 CAGAGTCACAGTCGTCCTCC 59.476 60.000 0.00 0.00 0.00 4.30
5548 5842 0.956410 AGAGTCACAGTCGTCCTCCG 60.956 60.000 0.00 0.00 38.13 4.63
5549 5843 1.924320 GAGTCACAGTCGTCCTCCGG 61.924 65.000 0.00 0.00 37.11 5.14
5550 5844 1.970114 GTCACAGTCGTCCTCCGGA 60.970 63.158 2.93 2.93 37.11 5.14
5593 5887 1.667724 CGCTGTTGGATCCACTGAATC 59.332 52.381 15.91 0.91 0.00 2.52
5682 5976 6.183360 ACCTTTGATTTGAAGGGAAAAGACAG 60.183 38.462 7.70 0.00 46.37 3.51
5684 5978 3.573967 TGATTTGAAGGGAAAAGACAGCC 59.426 43.478 0.00 0.00 0.00 4.85
5686 5980 0.112412 TGAAGGGAAAAGACAGCCCC 59.888 55.000 0.00 0.00 43.08 5.80
5731 6059 1.963172 AACAGGGAAGGTTTCACGTC 58.037 50.000 0.00 0.00 38.39 4.34
5735 6063 2.928416 GGAAGGTTTCACGTCCCAG 58.072 57.895 0.00 0.00 33.58 4.45
5736 6064 0.395312 GGAAGGTTTCACGTCCCAGA 59.605 55.000 0.00 0.00 33.58 3.86
5737 6065 1.509703 GAAGGTTTCACGTCCCAGAC 58.490 55.000 0.00 0.00 0.00 3.51
5739 6067 1.056660 AGGTTTCACGTCCCAGACAT 58.943 50.000 0.00 0.00 32.09 3.06
5740 6068 1.156736 GGTTTCACGTCCCAGACATG 58.843 55.000 0.00 0.00 32.09 3.21
5766 6097 3.275999 TGTGATGTGATGGCTCATCTTG 58.724 45.455 13.94 0.00 42.58 3.02
5775 6106 2.236382 GCTCATCTTGAGGAGCGCG 61.236 63.158 19.03 0.00 46.01 6.86
5781 6112 0.885879 TCTTGAGGAGCGCGAAAGTA 59.114 50.000 12.10 0.00 0.00 2.24
5800 6131 3.061848 CGTGGGCGGGCAGAAAAT 61.062 61.111 3.27 0.00 0.00 1.82
5867 6198 2.048601 CACCACACCACCCATTTGG 58.951 57.895 0.00 0.00 43.04 3.28
6038 6369 3.963383 AAACTTTGTTCGTACTGCTGG 57.037 42.857 0.00 0.00 0.00 4.85
6039 6370 2.614829 ACTTTGTTCGTACTGCTGGT 57.385 45.000 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.225642 AGTACTACTACTGAAAACAACGCC 58.774 41.667 0.00 0.00 31.46 5.68
34 35 7.481169 CGAGCTAGTACTACTACTGAAAACAAC 59.519 40.741 0.00 0.00 34.79 3.32
36 37 6.652481 ACGAGCTAGTACTACTACTGAAAACA 59.348 38.462 0.00 0.00 34.79 2.83
43 44 7.306205 CTCAAAACGAGCTAGTACTACTACT 57.694 40.000 0.00 0.00 34.55 2.57
82 83 3.249973 CTCGCATCGCATGGCATGG 62.250 63.158 27.48 17.60 0.00 3.66
83 84 2.171489 CTCTCGCATCGCATGGCATG 62.171 60.000 22.99 22.99 0.00 4.06
84 85 1.959738 CTCTCGCATCGCATGGCAT 60.960 57.895 0.00 0.00 0.00 4.40
85 86 2.586914 CTCTCGCATCGCATGGCA 60.587 61.111 0.00 0.00 0.00 4.92
86 87 4.010414 GCTCTCGCATCGCATGGC 62.010 66.667 0.00 0.00 35.78 4.40
194 195 3.138283 ACCAAACCCAAATCAGAGTCTGA 59.862 43.478 24.66 24.66 44.99 3.27
195 196 3.490348 ACCAAACCCAAATCAGAGTCTG 58.510 45.455 14.36 14.36 0.00 3.51
196 197 3.756117 GACCAAACCCAAATCAGAGTCT 58.244 45.455 0.00 0.00 0.00 3.24
197 198 2.484264 CGACCAAACCCAAATCAGAGTC 59.516 50.000 0.00 0.00 0.00 3.36
198 199 2.105821 TCGACCAAACCCAAATCAGAGT 59.894 45.455 0.00 0.00 0.00 3.24
199 200 2.484264 GTCGACCAAACCCAAATCAGAG 59.516 50.000 3.51 0.00 0.00 3.35
200 201 2.158740 TGTCGACCAAACCCAAATCAGA 60.159 45.455 14.12 0.00 0.00 3.27
210 211 4.609783 CGTTTCTGGTTATGTCGACCAAAC 60.610 45.833 14.12 16.12 45.94 2.93
215 216 3.572584 AGTCGTTTCTGGTTATGTCGAC 58.427 45.455 9.11 9.11 43.82 4.20
236 239 1.891150 GACCCAAGACGACTTCAGGTA 59.109 52.381 15.62 0.00 38.88 3.08
237 240 0.680061 GACCCAAGACGACTTCAGGT 59.320 55.000 15.59 15.59 40.41 4.00
238 241 0.969894 AGACCCAAGACGACTTCAGG 59.030 55.000 10.43 10.43 33.70 3.86
289 295 1.923204 CAAAGCGACGGATCTTCTCTG 59.077 52.381 0.00 0.00 36.23 3.35
308 315 2.159819 GAGAGAACCCAGACGCTGCA 62.160 60.000 0.00 0.00 0.00 4.41
309 316 1.446966 GAGAGAACCCAGACGCTGC 60.447 63.158 1.84 0.00 0.00 5.25
310 317 1.153939 CGAGAGAACCCAGACGCTG 60.154 63.158 0.52 0.52 0.00 5.18
311 318 1.303398 TCGAGAGAACCCAGACGCT 60.303 57.895 0.00 0.00 37.03 5.07
312 319 1.137825 CTCGAGAGAACCCAGACGC 59.862 63.158 6.58 0.00 41.32 5.19
316 323 1.953686 GGAGATCTCGAGAGAACCCAG 59.046 57.143 21.52 0.00 41.36 4.45
317 324 1.747552 CGGAGATCTCGAGAGAACCCA 60.748 57.143 21.52 0.00 41.36 4.51
318 325 0.948678 CGGAGATCTCGAGAGAACCC 59.051 60.000 21.52 16.45 41.36 4.11
344 395 2.342910 ACCTACAGTTTACACGCGAG 57.657 50.000 15.93 7.88 0.00 5.03
347 404 4.410448 GTCTCTACCTACAGTTTACACGC 58.590 47.826 0.00 0.00 0.00 5.34
356 413 1.134580 TCCGTCCGTCTCTACCTACAG 60.135 57.143 0.00 0.00 0.00 2.74
507 573 2.650602 GTGTGTTGCGTTGGTGCG 60.651 61.111 0.00 0.00 37.81 5.34
511 580 2.892334 CGGAGGTGTGTTGCGTTGG 61.892 63.158 0.00 0.00 0.00 3.77
513 582 1.450669 AACGGAGGTGTGTTGCGTT 60.451 52.632 0.00 0.00 45.59 4.84
560 641 2.002586 GTGTCATTCGCACTACAGCAT 58.997 47.619 0.00 0.00 34.30 3.79
561 642 1.270041 TGTGTCATTCGCACTACAGCA 60.270 47.619 0.00 0.00 37.70 4.41
562 643 1.428448 TGTGTCATTCGCACTACAGC 58.572 50.000 0.00 0.00 37.70 4.40
563 644 2.349580 CCATGTGTCATTCGCACTACAG 59.650 50.000 0.00 0.00 39.47 2.74
564 645 2.345876 CCATGTGTCATTCGCACTACA 58.654 47.619 0.00 0.00 39.47 2.74
565 646 1.665679 CCCATGTGTCATTCGCACTAC 59.334 52.381 0.00 0.00 39.47 2.73
566 647 1.552792 TCCCATGTGTCATTCGCACTA 59.447 47.619 0.00 0.00 39.47 2.74
567 648 0.324614 TCCCATGTGTCATTCGCACT 59.675 50.000 0.00 0.00 39.47 4.40
568 649 0.447801 GTCCCATGTGTCATTCGCAC 59.552 55.000 0.00 0.00 39.47 5.34
570 651 1.705337 CGGTCCCATGTGTCATTCGC 61.705 60.000 0.00 0.00 0.00 4.70
572 653 0.748005 CCCGGTCCCATGTGTCATTC 60.748 60.000 0.00 0.00 0.00 2.67
573 654 1.302949 CCCGGTCCCATGTGTCATT 59.697 57.895 0.00 0.00 0.00 2.57
574 655 1.910580 GACCCGGTCCCATGTGTCAT 61.911 60.000 6.25 0.00 0.00 3.06
575 656 2.528127 ACCCGGTCCCATGTGTCA 60.528 61.111 0.00 0.00 0.00 3.58
576 657 2.267961 GACCCGGTCCCATGTGTC 59.732 66.667 6.25 0.00 0.00 3.67
577 658 3.327404 GGACCCGGTCCCATGTGT 61.327 66.667 24.59 0.00 46.19 3.72
586 667 1.553690 CCAATCTCAGTGGACCCGGT 61.554 60.000 0.00 0.00 38.54 5.28
587 668 1.221840 CCAATCTCAGTGGACCCGG 59.778 63.158 0.00 0.00 38.54 5.73
588 669 2.286826 TCCAATCTCAGTGGACCCG 58.713 57.895 0.00 0.00 40.33 5.28
592 673 1.191489 TGCCGTCCAATCTCAGTGGA 61.191 55.000 0.00 0.00 43.03 4.02
593 674 0.742281 CTGCCGTCCAATCTCAGTGG 60.742 60.000 0.00 0.00 37.51 4.00
594 675 1.364626 GCTGCCGTCCAATCTCAGTG 61.365 60.000 0.00 0.00 0.00 3.66
595 676 1.078848 GCTGCCGTCCAATCTCAGT 60.079 57.895 0.00 0.00 0.00 3.41
596 677 2.169789 CGCTGCCGTCCAATCTCAG 61.170 63.158 0.00 0.00 0.00 3.35
597 678 2.125552 CGCTGCCGTCCAATCTCA 60.126 61.111 0.00 0.00 0.00 3.27
598 679 1.880340 CTCGCTGCCGTCCAATCTC 60.880 63.158 0.00 0.00 35.54 2.75
599 680 2.185350 CTCGCTGCCGTCCAATCT 59.815 61.111 0.00 0.00 35.54 2.40
600 681 2.892425 CCTCGCTGCCGTCCAATC 60.892 66.667 0.00 0.00 35.54 2.67
879 980 5.222086 TGGATAGATAGATGGATGGATGGG 58.778 45.833 0.00 0.00 0.00 4.00
891 992 8.824781 GCGTACGTTTATAGATGGATAGATAGA 58.175 37.037 17.90 0.00 0.00 1.98
892 993 8.610035 TGCGTACGTTTATAGATGGATAGATAG 58.390 37.037 17.90 0.00 0.00 2.08
893 994 8.496707 TGCGTACGTTTATAGATGGATAGATA 57.503 34.615 17.90 0.00 0.00 1.98
894 995 7.387119 TGCGTACGTTTATAGATGGATAGAT 57.613 36.000 17.90 0.00 0.00 1.98
895 996 6.806388 TGCGTACGTTTATAGATGGATAGA 57.194 37.500 17.90 0.00 0.00 1.98
896 997 8.462143 AATTGCGTACGTTTATAGATGGATAG 57.538 34.615 17.90 0.00 0.00 2.08
897 998 9.563898 CTAATTGCGTACGTTTATAGATGGATA 57.436 33.333 17.90 0.00 0.00 2.59
901 1002 9.390795 AGTACTAATTGCGTACGTTTATAGATG 57.609 33.333 17.90 2.40 41.51 2.90
975 1086 3.186409 CAGGTTACACAACAGATGGAACG 59.814 47.826 0.00 0.00 36.29 3.95
1591 1766 0.401356 TACTCCCCGAAACCCCAAAC 59.599 55.000 0.00 0.00 0.00 2.93
1621 1796 5.530176 AGCTAATTACTCCCCCTCAAAAA 57.470 39.130 0.00 0.00 0.00 1.94
1622 1797 5.132144 CCTAGCTAATTACTCCCCCTCAAAA 59.868 44.000 0.00 0.00 0.00 2.44
1623 1798 4.658901 CCTAGCTAATTACTCCCCCTCAAA 59.341 45.833 0.00 0.00 0.00 2.69
1624 1799 4.232091 CCTAGCTAATTACTCCCCCTCAA 58.768 47.826 0.00 0.00 0.00 3.02
1625 1800 3.209152 ACCTAGCTAATTACTCCCCCTCA 59.791 47.826 0.00 0.00 0.00 3.86
1626 1801 3.833650 GACCTAGCTAATTACTCCCCCTC 59.166 52.174 0.00 0.00 0.00 4.30
1627 1802 3.754500 CGACCTAGCTAATTACTCCCCCT 60.754 52.174 0.00 0.00 0.00 4.79
1628 1803 2.561858 CGACCTAGCTAATTACTCCCCC 59.438 54.545 0.00 0.00 0.00 5.40
1629 1804 3.229293 ACGACCTAGCTAATTACTCCCC 58.771 50.000 0.00 0.00 0.00 4.81
1630 1805 4.501058 CCAACGACCTAGCTAATTACTCCC 60.501 50.000 0.00 0.00 0.00 4.30
1631 1806 4.099113 ACCAACGACCTAGCTAATTACTCC 59.901 45.833 0.00 0.00 0.00 3.85
1632 1807 5.041940 CACCAACGACCTAGCTAATTACTC 58.958 45.833 0.00 0.00 0.00 2.59
1633 1808 4.142004 CCACCAACGACCTAGCTAATTACT 60.142 45.833 0.00 0.00 0.00 2.24
1634 1809 4.117685 CCACCAACGACCTAGCTAATTAC 58.882 47.826 0.00 0.00 0.00 1.89
1635 1810 3.431207 GCCACCAACGACCTAGCTAATTA 60.431 47.826 0.00 0.00 0.00 1.40
1636 1811 2.679930 GCCACCAACGACCTAGCTAATT 60.680 50.000 0.00 0.00 0.00 1.40
1657 1832 6.525578 TCAGTTAGTTGATGGGTAGTAGTG 57.474 41.667 0.00 0.00 0.00 2.74
1688 1866 4.280174 GTGCGGGGTATCATCTAGTTTAGA 59.720 45.833 0.00 0.00 39.50 2.10
1694 1872 0.959553 ACGTGCGGGGTATCATCTAG 59.040 55.000 0.00 0.00 0.00 2.43
1698 1876 0.035820 AACAACGTGCGGGGTATCAT 60.036 50.000 0.00 0.00 0.00 2.45
1700 1878 1.791662 CAACAACGTGCGGGGTATC 59.208 57.895 0.00 0.00 0.00 2.24
1701 1879 2.329614 GCAACAACGTGCGGGGTAT 61.330 57.895 0.00 0.00 34.21 2.73
1702 1880 2.973600 GCAACAACGTGCGGGGTA 60.974 61.111 0.00 0.00 34.21 3.69
1708 1886 0.450184 ATATTCCCGCAACAACGTGC 59.550 50.000 0.00 0.00 41.32 5.34
1709 1887 2.911819 AATATTCCCGCAACAACGTG 57.088 45.000 0.00 0.00 0.00 4.49
1710 1888 2.669950 GCAAATATTCCCGCAACAACGT 60.670 45.455 0.00 0.00 0.00 3.99
1711 1889 1.917303 GCAAATATTCCCGCAACAACG 59.083 47.619 0.00 0.00 0.00 4.10
1712 1890 2.953020 TGCAAATATTCCCGCAACAAC 58.047 42.857 5.05 0.00 0.00 3.32
1713 1891 3.667497 TTGCAAATATTCCCGCAACAA 57.333 38.095 13.09 0.00 39.32 2.83
1714 1892 3.883830 ATTGCAAATATTCCCGCAACA 57.116 38.095 17.25 2.96 46.21 3.33
1715 1893 4.677584 TGTATTGCAAATATTCCCGCAAC 58.322 39.130 17.25 10.31 46.21 4.17
1717 1895 5.528043 AATGTATTGCAAATATTCCCGCA 57.472 34.783 1.71 3.71 0.00 5.69
1718 1896 5.116983 CGAAATGTATTGCAAATATTCCCGC 59.883 40.000 1.71 0.00 0.00 6.13
1719 1897 6.434596 TCGAAATGTATTGCAAATATTCCCG 58.565 36.000 1.71 11.22 0.00 5.14
1720 1898 7.329226 CCATCGAAATGTATTGCAAATATTCCC 59.671 37.037 1.71 0.75 0.00 3.97
1721 1899 7.867403 ACCATCGAAATGTATTGCAAATATTCC 59.133 33.333 1.71 0.00 0.00 3.01
1722 1900 8.801715 ACCATCGAAATGTATTGCAAATATTC 57.198 30.769 1.71 3.69 0.00 1.75
1724 1902 9.844790 CATACCATCGAAATGTATTGCAAATAT 57.155 29.630 1.71 0.00 0.00 1.28
1725 1903 8.845227 ACATACCATCGAAATGTATTGCAAATA 58.155 29.630 1.71 0.00 32.21 1.40
1726 1904 7.648908 CACATACCATCGAAATGTATTGCAAAT 59.351 33.333 1.71 0.00 32.70 2.32
1727 1905 6.971756 CACATACCATCGAAATGTATTGCAAA 59.028 34.615 1.71 0.00 32.70 3.68
1728 1906 6.317391 TCACATACCATCGAAATGTATTGCAA 59.683 34.615 0.00 0.00 32.70 4.08
1729 1907 5.819901 TCACATACCATCGAAATGTATTGCA 59.180 36.000 0.00 0.00 32.70 4.08
1730 1908 6.299023 TCACATACCATCGAAATGTATTGC 57.701 37.500 0.00 0.00 32.70 3.56
1731 1909 9.385902 GAAATCACATACCATCGAAATGTATTG 57.614 33.333 0.00 0.03 32.70 1.90
1732 1910 9.342308 AGAAATCACATACCATCGAAATGTATT 57.658 29.630 0.00 0.00 32.70 1.89
1733 1911 8.908786 AGAAATCACATACCATCGAAATGTAT 57.091 30.769 0.00 0.00 32.70 2.29
1734 1912 9.996554 ATAGAAATCACATACCATCGAAATGTA 57.003 29.630 0.00 0.00 32.70 2.29
1735 1913 8.777413 CATAGAAATCACATACCATCGAAATGT 58.223 33.333 0.00 0.00 34.22 2.71
1736 1914 8.232513 CCATAGAAATCACATACCATCGAAATG 58.767 37.037 0.00 0.00 0.00 2.32
1737 1915 8.156820 TCCATAGAAATCACATACCATCGAAAT 58.843 33.333 0.00 0.00 0.00 2.17
1738 1916 7.505258 TCCATAGAAATCACATACCATCGAAA 58.495 34.615 0.00 0.00 0.00 3.46
1739 1917 7.061566 TCCATAGAAATCACATACCATCGAA 57.938 36.000 0.00 0.00 0.00 3.71
1740 1918 6.664428 TCCATAGAAATCACATACCATCGA 57.336 37.500 0.00 0.00 0.00 3.59
1741 1919 6.705825 TGTTCCATAGAAATCACATACCATCG 59.294 38.462 0.00 0.00 32.58 3.84
1742 1920 8.509690 CATGTTCCATAGAAATCACATACCATC 58.490 37.037 0.00 0.00 32.58 3.51
1743 1921 8.219868 TCATGTTCCATAGAAATCACATACCAT 58.780 33.333 0.00 0.00 32.58 3.55
1744 1922 7.572814 TCATGTTCCATAGAAATCACATACCA 58.427 34.615 0.00 0.00 32.58 3.25
1745 1923 8.450578 TTCATGTTCCATAGAAATCACATACC 57.549 34.615 0.00 0.00 32.58 2.73
1748 1926 9.857656 ACTATTCATGTTCCATAGAAATCACAT 57.142 29.630 0.00 0.00 32.58 3.21
1749 1927 9.112725 CACTATTCATGTTCCATAGAAATCACA 57.887 33.333 0.00 0.00 32.58 3.58
1750 1928 9.330063 TCACTATTCATGTTCCATAGAAATCAC 57.670 33.333 0.00 0.00 32.58 3.06
1757 1935 9.561270 CGTAGTATCACTATTCATGTTCCATAG 57.439 37.037 0.00 0.00 32.65 2.23
1758 1936 9.292195 TCGTAGTATCACTATTCATGTTCCATA 57.708 33.333 0.00 0.00 32.65 2.74
1759 1937 8.178313 TCGTAGTATCACTATTCATGTTCCAT 57.822 34.615 0.00 0.00 32.65 3.41
1760 1938 7.576861 TCGTAGTATCACTATTCATGTTCCA 57.423 36.000 0.00 0.00 32.65 3.53
1761 1939 8.867112 TTTCGTAGTATCACTATTCATGTTCC 57.133 34.615 0.00 0.00 32.65 3.62
1763 1941 9.871238 AGTTTTCGTAGTATCACTATTCATGTT 57.129 29.630 0.00 0.00 32.65 2.71
1772 1950 8.995220 TGCAATTTTAGTTTTCGTAGTATCACT 58.005 29.630 0.00 0.00 0.00 3.41
1773 1951 9.601971 TTGCAATTTTAGTTTTCGTAGTATCAC 57.398 29.630 0.00 0.00 0.00 3.06
1778 1956 9.522804 TGAATTTGCAATTTTAGTTTTCGTAGT 57.477 25.926 0.00 0.00 0.00 2.73
1793 1971 9.386010 ACACAATAAAGCATATGAATTTGCAAT 57.614 25.926 6.97 0.00 41.35 3.56
1794 1972 8.774890 ACACAATAAAGCATATGAATTTGCAA 57.225 26.923 6.97 0.00 41.35 4.08
1795 1973 8.774890 AACACAATAAAGCATATGAATTTGCA 57.225 26.923 6.97 0.00 41.35 4.08
1796 1974 9.480538 CAAACACAATAAAGCATATGAATTTGC 57.519 29.630 6.97 0.00 39.17 3.68
1845 2023 9.120538 GTCCACCTCAACATGTAAACATATATT 57.879 33.333 0.00 0.00 34.26 1.28
1846 2024 8.271458 TGTCCACCTCAACATGTAAACATATAT 58.729 33.333 0.00 0.00 34.26 0.86
1847 2025 7.625469 TGTCCACCTCAACATGTAAACATATA 58.375 34.615 0.00 0.00 34.26 0.86
1848 2026 6.480763 TGTCCACCTCAACATGTAAACATAT 58.519 36.000 0.00 0.00 34.26 1.78
1849 2027 5.870706 TGTCCACCTCAACATGTAAACATA 58.129 37.500 0.00 0.00 34.26 2.29
1850 2028 4.724399 TGTCCACCTCAACATGTAAACAT 58.276 39.130 0.00 0.00 36.96 2.71
1851 2029 4.157849 TGTCCACCTCAACATGTAAACA 57.842 40.909 0.00 0.00 0.00 2.83
1852 2030 5.705609 AATGTCCACCTCAACATGTAAAC 57.294 39.130 0.00 0.00 36.28 2.01
1853 2031 6.322456 TGAAAATGTCCACCTCAACATGTAAA 59.678 34.615 0.00 0.00 36.28 2.01
1854 2032 5.830457 TGAAAATGTCCACCTCAACATGTAA 59.170 36.000 0.00 0.00 36.28 2.41
1855 2033 5.240623 GTGAAAATGTCCACCTCAACATGTA 59.759 40.000 0.00 0.00 36.28 2.29
1856 2034 4.037923 GTGAAAATGTCCACCTCAACATGT 59.962 41.667 0.00 0.00 36.28 3.21
1857 2035 4.549458 GTGAAAATGTCCACCTCAACATG 58.451 43.478 0.00 0.00 36.28 3.21
1858 2036 3.253188 CGTGAAAATGTCCACCTCAACAT 59.747 43.478 0.00 0.00 37.71 2.71
1859 2037 2.616376 CGTGAAAATGTCCACCTCAACA 59.384 45.455 0.00 0.00 0.00 3.33
1860 2038 2.616842 ACGTGAAAATGTCCACCTCAAC 59.383 45.455 0.00 0.00 0.00 3.18
1861 2039 2.616376 CACGTGAAAATGTCCACCTCAA 59.384 45.455 10.90 0.00 0.00 3.02
1862 2040 2.217750 CACGTGAAAATGTCCACCTCA 58.782 47.619 10.90 0.00 0.00 3.86
1863 2041 1.069227 GCACGTGAAAATGTCCACCTC 60.069 52.381 22.23 0.00 0.00 3.85
1864 2042 0.951558 GCACGTGAAAATGTCCACCT 59.048 50.000 22.23 0.00 0.00 4.00
1865 2043 0.665835 TGCACGTGAAAATGTCCACC 59.334 50.000 22.23 0.00 0.00 4.61
1866 2044 2.031245 TCATGCACGTGAAAATGTCCAC 60.031 45.455 22.23 0.00 0.00 4.02
1867 2045 2.225467 TCATGCACGTGAAAATGTCCA 58.775 42.857 22.23 5.10 0.00 4.02
1868 2046 2.987413 TCATGCACGTGAAAATGTCC 57.013 45.000 22.23 0.00 0.00 4.02
1869 2047 4.811158 CATTCATGCACGTGAAAATGTC 57.189 40.909 22.23 0.00 41.09 3.06
1884 2062 1.551430 CCCACCACAACATGCATTCAT 59.449 47.619 0.00 0.00 0.00 2.57
1885 2063 0.967662 CCCACCACAACATGCATTCA 59.032 50.000 0.00 0.00 0.00 2.57
1886 2064 0.390209 GCCCACCACAACATGCATTC 60.390 55.000 0.00 0.00 0.00 2.67
1887 2065 0.832983 AGCCCACCACAACATGCATT 60.833 50.000 0.00 0.00 0.00 3.56
1888 2066 0.832983 AAGCCCACCACAACATGCAT 60.833 50.000 0.00 0.00 0.00 3.96
1889 2067 1.047596 AAAGCCCACCACAACATGCA 61.048 50.000 0.00 0.00 0.00 3.96
1890 2068 0.106521 AAAAGCCCACCACAACATGC 59.893 50.000 0.00 0.00 0.00 4.06
1891 2069 2.211806 CAAAAAGCCCACCACAACATG 58.788 47.619 0.00 0.00 0.00 3.21
1892 2070 1.474855 GCAAAAAGCCCACCACAACAT 60.475 47.619 0.00 0.00 37.23 2.71
1893 2071 0.107945 GCAAAAAGCCCACCACAACA 60.108 50.000 0.00 0.00 37.23 3.33
1894 2072 2.689083 GCAAAAAGCCCACCACAAC 58.311 52.632 0.00 0.00 37.23 3.32
1902 2080 5.017037 GCAACATGCATAGCAAAAAGCCC 62.017 47.826 0.00 0.00 43.89 5.19
1903 2081 2.094734 GCAACATGCATAGCAAAAAGCC 59.905 45.455 0.00 0.00 43.89 4.35
1904 2082 3.378959 GCAACATGCATAGCAAAAAGC 57.621 42.857 0.00 0.00 43.62 3.51
1916 2094 2.536365 CCACATCATCAAGCAACATGC 58.464 47.619 0.00 0.00 45.46 4.06
1917 2095 2.094442 TGCCACATCATCAAGCAACATG 60.094 45.455 0.00 0.00 0.00 3.21
1918 2096 2.172679 TGCCACATCATCAAGCAACAT 58.827 42.857 0.00 0.00 0.00 2.71
1919 2097 1.618487 TGCCACATCATCAAGCAACA 58.382 45.000 0.00 0.00 0.00 3.33
1920 2098 2.536365 CATGCCACATCATCAAGCAAC 58.464 47.619 0.00 0.00 36.95 4.17
1921 2099 1.134936 GCATGCCACATCATCAAGCAA 60.135 47.619 6.36 0.00 36.95 3.91
1922 2100 0.458260 GCATGCCACATCATCAAGCA 59.542 50.000 6.36 0.00 37.94 3.91
1923 2101 0.744874 AGCATGCCACATCATCAAGC 59.255 50.000 15.66 0.00 0.00 4.01
1924 2102 2.809446 CAAGCATGCCACATCATCAAG 58.191 47.619 15.66 0.00 0.00 3.02
1925 2103 2.951457 CAAGCATGCCACATCATCAA 57.049 45.000 15.66 0.00 0.00 2.57
1938 2116 6.096423 ACATATTTCTCTCAACATGCAAGCAT 59.904 34.615 0.86 0.86 37.08 3.79
1939 2117 5.416639 ACATATTTCTCTCAACATGCAAGCA 59.583 36.000 0.00 0.00 0.00 3.91
1940 2118 5.888105 ACATATTTCTCTCAACATGCAAGC 58.112 37.500 0.00 0.00 0.00 4.01
1942 2120 9.791820 CATTAACATATTTCTCTCAACATGCAA 57.208 29.630 0.00 0.00 0.00 4.08
1943 2121 8.407832 CCATTAACATATTTCTCTCAACATGCA 58.592 33.333 0.00 0.00 0.00 3.96
1944 2122 7.864379 CCCATTAACATATTTCTCTCAACATGC 59.136 37.037 0.00 0.00 0.00 4.06
1945 2123 8.355169 CCCCATTAACATATTTCTCTCAACATG 58.645 37.037 0.00 0.00 0.00 3.21
1946 2124 7.014615 GCCCCATTAACATATTTCTCTCAACAT 59.985 37.037 0.00 0.00 0.00 2.71
1947 2125 6.321181 GCCCCATTAACATATTTCTCTCAACA 59.679 38.462 0.00 0.00 0.00 3.33
1948 2126 6.547510 AGCCCCATTAACATATTTCTCTCAAC 59.452 38.462 0.00 0.00 0.00 3.18
1949 2127 6.547141 CAGCCCCATTAACATATTTCTCTCAA 59.453 38.462 0.00 0.00 0.00 3.02
1950 2128 6.064060 CAGCCCCATTAACATATTTCTCTCA 58.936 40.000 0.00 0.00 0.00 3.27
1951 2129 5.474876 CCAGCCCCATTAACATATTTCTCTC 59.525 44.000 0.00 0.00 0.00 3.20
1952 2130 5.388654 CCAGCCCCATTAACATATTTCTCT 58.611 41.667 0.00 0.00 0.00 3.10
1953 2131 4.021981 GCCAGCCCCATTAACATATTTCTC 60.022 45.833 0.00 0.00 0.00 2.87
1954 2132 3.897505 GCCAGCCCCATTAACATATTTCT 59.102 43.478 0.00 0.00 0.00 2.52
1955 2133 3.897505 AGCCAGCCCCATTAACATATTTC 59.102 43.478 0.00 0.00 0.00 2.17
1956 2134 3.927476 AGCCAGCCCCATTAACATATTT 58.073 40.909 0.00 0.00 0.00 1.40
1957 2135 3.618120 AGCCAGCCCCATTAACATATT 57.382 42.857 0.00 0.00 0.00 1.28
1958 2136 4.953781 ATAGCCAGCCCCATTAACATAT 57.046 40.909 0.00 0.00 0.00 1.78
1959 2137 4.740154 AATAGCCAGCCCCATTAACATA 57.260 40.909 0.00 0.00 0.00 2.29
1960 2138 3.618120 AATAGCCAGCCCCATTAACAT 57.382 42.857 0.00 0.00 0.00 2.71
1961 2139 3.396685 AAATAGCCAGCCCCATTAACA 57.603 42.857 0.00 0.00 0.00 2.41
1962 2140 4.725490 TCTAAATAGCCAGCCCCATTAAC 58.275 43.478 0.00 0.00 0.00 2.01
1963 2141 5.599048 ATCTAAATAGCCAGCCCCATTAA 57.401 39.130 0.00 0.00 0.00 1.40
1964 2142 6.908526 ATATCTAAATAGCCAGCCCCATTA 57.091 37.500 0.00 0.00 0.00 1.90
1965 2143 5.803463 ATATCTAAATAGCCAGCCCCATT 57.197 39.130 0.00 0.00 0.00 3.16
1966 2144 6.212773 TCTATATCTAAATAGCCAGCCCCAT 58.787 40.000 0.00 0.00 30.79 4.00
1967 2145 5.599751 TCTATATCTAAATAGCCAGCCCCA 58.400 41.667 0.00 0.00 30.79 4.96
1968 2146 6.384305 TCTTCTATATCTAAATAGCCAGCCCC 59.616 42.308 0.00 0.00 30.79 5.80
1969 2147 7.425224 TCTTCTATATCTAAATAGCCAGCCC 57.575 40.000 0.00 0.00 30.79 5.19
1974 2152 9.990360 GGCCTAATCTTCTATATCTAAATAGCC 57.010 37.037 0.00 0.00 30.79 3.93
1975 2153 9.990360 GGGCCTAATCTTCTATATCTAAATAGC 57.010 37.037 0.84 0.00 30.79 2.97
1977 2155 9.144298 CGGGGCCTAATCTTCTATATCTAAATA 57.856 37.037 0.84 0.00 0.00 1.40
1978 2156 7.419172 GCGGGGCCTAATCTTCTATATCTAAAT 60.419 40.741 0.84 0.00 0.00 1.40
1979 2157 6.127140 GCGGGGCCTAATCTTCTATATCTAAA 60.127 42.308 0.84 0.00 0.00 1.85
1980 2158 5.363005 GCGGGGCCTAATCTTCTATATCTAA 59.637 44.000 0.84 0.00 0.00 2.10
1981 2159 4.894114 GCGGGGCCTAATCTTCTATATCTA 59.106 45.833 0.84 0.00 0.00 1.98
1982 2160 3.707102 GCGGGGCCTAATCTTCTATATCT 59.293 47.826 0.84 0.00 0.00 1.98
1983 2161 3.707102 AGCGGGGCCTAATCTTCTATATC 59.293 47.826 0.84 0.00 0.00 1.63
1984 2162 3.707102 GAGCGGGGCCTAATCTTCTATAT 59.293 47.826 0.84 0.00 0.00 0.86
1985 2163 3.097614 GAGCGGGGCCTAATCTTCTATA 58.902 50.000 0.84 0.00 0.00 1.31
1986 2164 1.903183 GAGCGGGGCCTAATCTTCTAT 59.097 52.381 0.84 0.00 0.00 1.98
1987 2165 1.339097 GAGCGGGGCCTAATCTTCTA 58.661 55.000 0.84 0.00 0.00 2.10
1988 2166 1.749334 CGAGCGGGGCCTAATCTTCT 61.749 60.000 0.84 0.00 0.00 2.85
1989 2167 1.301009 CGAGCGGGGCCTAATCTTC 60.301 63.158 0.84 0.00 0.00 2.87
1990 2168 2.822399 CGAGCGGGGCCTAATCTT 59.178 61.111 0.84 0.00 0.00 2.40
1991 2169 3.930012 GCGAGCGGGGCCTAATCT 61.930 66.667 0.84 0.00 0.00 2.40
1992 2170 3.930012 AGCGAGCGGGGCCTAATC 61.930 66.667 0.84 0.00 0.00 1.75
1993 2171 4.241555 CAGCGAGCGGGGCCTAAT 62.242 66.667 0.84 0.00 0.00 1.73
1995 2173 4.826404 TACAGCGAGCGGGGCCTA 62.826 66.667 0.84 0.00 0.00 3.93
2144 2348 2.165030 GGCTGTCATCATTGGTTCAAGG 59.835 50.000 0.00 0.00 0.00 3.61
2241 2450 2.221981 GCCTGCTGCGATTAAGATGTAC 59.778 50.000 0.00 0.00 0.00 2.90
2242 2451 2.158971 TGCCTGCTGCGATTAAGATGTA 60.159 45.455 0.00 0.00 45.60 2.29
2297 2536 2.010817 CGCTGCCACTTTGTTTCGC 61.011 57.895 0.00 0.00 0.00 4.70
2399 2638 1.130613 CCGCGAAAAGAGACAAGCG 59.869 57.895 8.23 0.36 46.07 4.68
2400 2639 1.154395 GCCGCGAAAAGAGACAAGC 60.154 57.895 8.23 0.00 0.00 4.01
2401 2640 0.586319 TTGCCGCGAAAAGAGACAAG 59.414 50.000 8.23 0.00 0.00 3.16
2402 2641 0.586319 CTTGCCGCGAAAAGAGACAA 59.414 50.000 8.23 0.00 0.00 3.18
2403 2642 0.249699 TCTTGCCGCGAAAAGAGACA 60.250 50.000 8.23 0.00 0.00 3.41
2404 2643 0.865769 TTCTTGCCGCGAAAAGAGAC 59.134 50.000 8.23 0.00 34.09 3.36
2434 2673 3.445096 GTGAAGAAGGGAATGATGGTTGG 59.555 47.826 0.00 0.00 0.00 3.77
2524 2775 0.251165 CTAACCCACCACCAACCTGG 60.251 60.000 0.00 0.00 45.02 4.45
2526 2777 1.065997 AGCTAACCCACCACCAACCT 61.066 55.000 0.00 0.00 0.00 3.50
2553 2804 4.834453 CTCCAGCCAGCGAGCCAG 62.834 72.222 0.00 0.00 0.00 4.85
2619 2892 1.301716 CACTCCCACCCACGTCTTG 60.302 63.158 0.00 0.00 0.00 3.02
2666 2953 1.674322 CAACGCCCCACCTAACCTG 60.674 63.158 0.00 0.00 0.00 4.00
2677 2964 2.658268 GCAAGCACAACAACGCCC 60.658 61.111 0.00 0.00 0.00 6.13
2744 3031 2.685388 GGAGCCTTATCTGCAAAAGTCC 59.315 50.000 0.00 0.00 0.00 3.85
2752 3039 2.293170 GGACTTTGGAGCCTTATCTGC 58.707 52.381 0.00 0.00 0.00 4.26
2791 3079 9.559958 AATTCAACTATCGTGCATAAGAAAAAG 57.440 29.630 0.00 0.00 0.00 2.27
2917 3205 2.052782 TAGCGACAGGTATGCAGAGA 57.947 50.000 0.00 0.00 0.00 3.10
2918 3206 3.668226 CGTATAGCGACAGGTATGCAGAG 60.668 52.174 0.00 0.00 41.44 3.35
2919 3207 2.225727 CGTATAGCGACAGGTATGCAGA 59.774 50.000 0.00 0.00 41.44 4.26
2923 3211 2.316792 GCACGTATAGCGACAGGTATG 58.683 52.381 0.00 0.00 44.77 2.39
2998 3286 5.971895 TTTTCTGAAAATTGTTGCTCAGC 57.028 34.783 11.33 0.00 36.15 4.26
3032 3320 9.515226 AGTCTGGAATAAGTTATTGTTGCTTAA 57.485 29.630 12.86 0.00 30.69 1.85
3073 3361 3.008594 TGCCGAGTCTTCCCTCAAAATAA 59.991 43.478 0.00 0.00 0.00 1.40
3074 3362 2.569853 TGCCGAGTCTTCCCTCAAAATA 59.430 45.455 0.00 0.00 0.00 1.40
3075 3363 1.351017 TGCCGAGTCTTCCCTCAAAAT 59.649 47.619 0.00 0.00 0.00 1.82
3080 3368 0.670854 GTTGTGCCGAGTCTTCCCTC 60.671 60.000 0.00 0.00 0.00 4.30
3081 3369 1.371558 GTTGTGCCGAGTCTTCCCT 59.628 57.895 0.00 0.00 0.00 4.20
3115 3403 2.423892 TGTACAGCACTAGACTGCTAGC 59.576 50.000 8.10 8.10 46.14 3.42
3155 3443 7.011016 TGGTCGTATGATTAGTTATGCTTGTTG 59.989 37.037 0.00 0.00 0.00 3.33
3218 3507 1.926490 GCACTTGGCGCAAAACTTG 59.074 52.632 10.83 2.69 0.00 3.16
3263 3552 2.359975 GGGGAGCAAACGGGTCAG 60.360 66.667 0.00 0.00 45.90 3.51
3269 3558 0.593128 CAAACAGAGGGGAGCAAACG 59.407 55.000 0.00 0.00 0.00 3.60
3404 3693 1.666234 GATCTCGAAGCGGATGCCC 60.666 63.158 0.00 0.00 44.31 5.36
3491 3780 1.302431 CACAAGGTCACCGGATGCA 60.302 57.895 9.46 0.00 0.00 3.96
3839 4128 0.323087 TGTGCTCCATGATTGCAGCT 60.323 50.000 0.00 0.00 37.39 4.24
3914 4203 0.731417 CCTGCTTCGGCTTCATCAAG 59.269 55.000 0.00 0.00 42.37 3.02
4835 5124 1.026718 GGCAGTCCTTGATCCGGTTG 61.027 60.000 0.00 0.00 0.00 3.77
5044 5333 1.668047 GGTGTTACCTTGTCTCGTCGG 60.668 57.143 0.00 0.00 34.73 4.79
5053 5342 5.845391 TCTTTTCCTTTGGTGTTACCTTG 57.155 39.130 0.00 0.00 39.58 3.61
5107 5396 0.868406 CCGCTTCACAGTCTTGAACC 59.132 55.000 0.00 0.00 32.02 3.62
5298 5587 7.302524 TCATTAAGAAACAAAGGCGATAACAC 58.697 34.615 0.00 0.00 0.00 3.32
5340 5633 0.396435 ACTCTTCGACCCACAATGCA 59.604 50.000 0.00 0.00 0.00 3.96
5491 5785 4.595116 CACGTAACCTAGGATAGTCGTTG 58.405 47.826 17.98 6.54 36.82 4.10
5495 5789 2.874701 TCGCACGTAACCTAGGATAGTC 59.125 50.000 17.98 0.00 36.82 2.59
5544 5838 2.030185 TCTCTCAACTCGTTTTCCGGAG 60.030 50.000 3.34 0.00 37.11 4.63
5545 5839 1.958579 TCTCTCAACTCGTTTTCCGGA 59.041 47.619 0.00 0.00 37.11 5.14
5546 5840 2.433868 TCTCTCAACTCGTTTTCCGG 57.566 50.000 0.00 0.00 37.11 5.14
5547 5841 3.120792 TGTTCTCTCAACTCGTTTTCCG 58.879 45.455 0.00 0.00 38.13 4.30
5548 5842 4.834234 GTTGTTCTCTCAACTCGTTTTCC 58.166 43.478 0.00 0.00 42.76 3.13
5582 5876 7.173722 AGAAAAATCACTCTGATTCAGTGGAT 58.826 34.615 17.46 13.84 45.57 3.41
5593 5887 8.537223 CAACATTCAACAAGAAAAATCACTCTG 58.463 33.333 0.00 0.00 40.22 3.35
5684 5978 6.444704 AGTAGATCATATACCATGTAGGGGG 58.555 44.000 0.00 0.00 43.89 5.40
5698 5992 8.388656 ACCTTCCCTGTTTAAAGTAGATCATA 57.611 34.615 0.00 0.00 0.00 2.15
5737 6065 1.339929 CCATCACATCACATGGCCATG 59.660 52.381 38.53 38.53 44.15 3.66
5739 6067 3.194419 CCATCACATCACATGGCCA 57.806 52.632 8.56 8.56 33.37 5.36
5766 6097 1.872679 CGGTACTTTCGCGCTCCTC 60.873 63.158 5.56 0.00 0.00 3.71
5800 6131 5.471797 TGACGCCTGAACTAATTCAAATCAA 59.528 36.000 0.00 0.00 44.28 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.