Multiple sequence alignment - TraesCS6A01G222300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G222300 chr6A 100.000 4116 0 0 1 4116 415908673 415904558 0.000000e+00 7601.0
1 TraesCS6A01G222300 chr6A 88.213 263 13 3 3872 4116 390930208 390930470 8.650000e-77 298.0
2 TraesCS6A01G222300 chr6A 88.123 261 13 3 3874 4116 91690616 91690356 1.120000e-75 294.0
3 TraesCS6A01G222300 chr6A 85.944 249 17 4 3873 4103 899307 899555 2.460000e-62 250.0
4 TraesCS6A01G222300 chr6A 100.000 31 0 0 572 602 116332501 116332531 1.600000e-04 58.4
5 TraesCS6A01G222300 chr6D 95.521 3282 100 20 602 3873 301267836 301271080 0.000000e+00 5203.0
6 TraesCS6A01G222300 chr6D 92.082 341 27 0 1 341 301267340 301267680 8.000000e-132 481.0
7 TraesCS6A01G222300 chr6D 96.296 81 2 1 494 573 301267770 301267850 9.280000e-27 132.0
8 TraesCS6A01G222300 chr6D 100.000 31 0 0 572 602 456581543 456581573 1.600000e-04 58.4
9 TraesCS6A01G222300 chr6B 93.250 3289 123 37 602 3866 466695398 466698611 0.000000e+00 4752.0
10 TraesCS6A01G222300 chr6B 89.150 341 35 2 2 341 466679253 466679592 1.370000e-114 424.0
11 TraesCS6A01G222300 chr6B 91.613 155 8 1 419 573 466695263 466695412 4.170000e-50 209.0
12 TraesCS6A01G222300 chr6B 91.111 45 2 1 560 602 26974128 26974172 4.440000e-05 60.2
13 TraesCS6A01G222300 chr6B 100.000 31 0 0 572 602 694429401 694429431 1.600000e-04 58.4
14 TraesCS6A01G222300 chr6B 96.970 33 1 0 573 605 656195416 656195384 5.750000e-04 56.5
15 TraesCS6A01G222300 chr2A 80.094 1065 158 41 1029 2067 623564709 623563673 0.000000e+00 743.0
16 TraesCS6A01G222300 chr2A 85.932 263 19 4 3872 4116 618348884 618349146 8.770000e-67 265.0
17 TraesCS6A01G222300 chr2B 80.315 1016 160 30 1060 2058 563924023 563923031 0.000000e+00 732.0
18 TraesCS6A01G222300 chr2B 86.312 263 18 4 3872 4116 388443019 388443281 1.890000e-68 270.0
19 TraesCS6A01G222300 chr2D 79.865 1038 156 39 1051 2062 480778603 480777593 0.000000e+00 710.0
20 TraesCS6A01G222300 chr7D 80.800 625 103 11 1055 1675 556120975 556121586 1.340000e-129 473.0
21 TraesCS6A01G222300 chr7A 80.534 637 92 26 1055 1675 641581291 641580671 1.040000e-125 460.0
22 TraesCS6A01G222300 chr7A 88.973 263 11 4 3872 4116 693287380 693287118 4.000000e-80 309.0
23 TraesCS6A01G222300 chr1A 77.994 668 113 27 1036 1677 278141914 278142573 4.990000e-104 388.0
24 TraesCS6A01G222300 chr1A 88.168 262 13 3 3873 4116 439887511 439887250 3.110000e-76 296.0
25 TraesCS6A01G222300 chr1A 84.411 263 23 3 3872 4116 245515837 245516099 4.110000e-60 243.0
26 TraesCS6A01G222300 chr1B 77.481 675 113 30 1036 1677 310927094 310927762 6.500000e-98 368.0
27 TraesCS6A01G222300 chr1B 100.000 30 0 0 573 602 561389053 561389082 5.750000e-04 56.5
28 TraesCS6A01G222300 chr4A 88.636 264 12 3 3871 4116 457515287 457515550 5.170000e-79 305.0
29 TraesCS6A01G222300 chr4A 88.506 261 12 4 3874 4116 151135096 151134836 2.400000e-77 300.0
30 TraesCS6A01G222300 chr4A 87.786 262 14 3 3873 4116 11509968 11509707 1.450000e-74 291.0
31 TraesCS6A01G222300 chr5A 88.506 261 12 3 3874 4116 117925550 117925290 2.400000e-77 300.0
32 TraesCS6A01G222300 chr5A 88.123 261 13 3 3874 4116 383711954 383711694 1.120000e-75 294.0
33 TraesCS6A01G222300 chr5A 97.059 34 1 0 572 605 14270476 14270443 1.600000e-04 58.4
34 TraesCS6A01G222300 chr3A 88.123 261 13 4 3872 4114 28397106 28397366 1.120000e-75 294.0
35 TraesCS6A01G222300 chr3A 85.878 262 19 4 3873 4116 396953298 396953037 3.160000e-66 263.0
36 TraesCS6A01G222300 chr3A 87.963 216 8 3 3919 4116 154587497 154587282 5.320000e-59 239.0
37 TraesCS6A01G222300 chrUn 84.791 263 22 4 3872 4116 35525201 35524939 8.840000e-62 248.0
38 TraesCS6A01G222300 chr5B 100.000 31 0 0 572 602 417656808 417656778 1.600000e-04 58.4
39 TraesCS6A01G222300 chr4D 100.000 31 0 0 572 602 96515391 96515421 1.600000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G222300 chr6A 415904558 415908673 4115 True 7601.000000 7601 100.0000 1 4116 1 chr6A.!!$R2 4115
1 TraesCS6A01G222300 chr6D 301267340 301271080 3740 False 1938.666667 5203 94.6330 1 3873 3 chr6D.!!$F2 3872
2 TraesCS6A01G222300 chr6B 466695263 466698611 3348 False 2480.500000 4752 92.4315 419 3866 2 chr6B.!!$F4 3447
3 TraesCS6A01G222300 chr2A 623563673 623564709 1036 True 743.000000 743 80.0940 1029 2067 1 chr2A.!!$R1 1038
4 TraesCS6A01G222300 chr2B 563923031 563924023 992 True 732.000000 732 80.3150 1060 2058 1 chr2B.!!$R1 998
5 TraesCS6A01G222300 chr2D 480777593 480778603 1010 True 710.000000 710 79.8650 1051 2062 1 chr2D.!!$R1 1011
6 TraesCS6A01G222300 chr7D 556120975 556121586 611 False 473.000000 473 80.8000 1055 1675 1 chr7D.!!$F1 620
7 TraesCS6A01G222300 chr7A 641580671 641581291 620 True 460.000000 460 80.5340 1055 1675 1 chr7A.!!$R1 620
8 TraesCS6A01G222300 chr1A 278141914 278142573 659 False 388.000000 388 77.9940 1036 1677 1 chr1A.!!$F2 641
9 TraesCS6A01G222300 chr1B 310927094 310927762 668 False 368.000000 368 77.4810 1036 1677 1 chr1B.!!$F1 641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
357 358 0.107508 CCCGGACTTGAGCACATCAT 60.108 55.0 0.73 0.0 37.89 2.45 F
662 663 0.460311 GGCGGTATATCCTCGATGGG 59.540 60.0 0.00 0.0 36.20 4.00 F
2331 2392 0.893447 CTCCTAAACCCGTCGTTCCT 59.107 55.0 0.00 0.0 31.78 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1338 1378 0.249405 GCTTCTCCTGCTCCTCATCG 60.249 60.000 0.00 0.0 0.00 3.84 R
2374 2435 1.065928 CGGATGGTAGCTGTCGGTC 59.934 63.158 0.00 0.0 0.00 4.79 R
3986 4077 0.033601 GTATGCCATGTGGGGTCCAA 60.034 55.000 0.54 0.0 34.18 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.004734 CCTGAATGGTTCTTGTCACAACC 59.995 47.826 6.07 6.07 42.28 3.77
45 46 2.327940 GTGCTTCGCTGCAACGTT 59.672 55.556 9.64 0.00 45.12 3.99
55 56 1.153147 TGCAACGTTGTGCCCACTA 60.153 52.632 27.78 0.00 44.26 2.74
115 116 2.301346 GGTGGCCTAGATTCCAACATG 58.699 52.381 3.32 0.00 39.79 3.21
135 136 0.679505 TCCACTCGTTGCACTAGCTT 59.320 50.000 0.00 0.00 42.74 3.74
138 139 2.341257 CACTCGTTGCACTAGCTTGAT 58.659 47.619 1.04 0.00 42.74 2.57
187 188 0.179032 TCAGCAACCGTGTCACCATT 60.179 50.000 0.00 0.00 0.00 3.16
193 194 0.465460 ACCGTGTCACCATTGTTGCT 60.465 50.000 0.00 0.00 0.00 3.91
198 199 2.031682 GTGTCACCATTGTTGCTGTCTC 60.032 50.000 0.00 0.00 0.00 3.36
235 236 4.018960 AGAATTGCATACTGGGACTTGAGT 60.019 41.667 0.00 0.00 0.00 3.41
247 248 4.532126 TGGGACTTGAGTACATCATCAACT 59.468 41.667 0.00 0.00 37.89 3.16
252 253 7.602644 GGACTTGAGTACATCATCAACTTTACA 59.397 37.037 0.00 0.00 37.89 2.41
255 256 6.683715 TGAGTACATCATCAACTTTACACGA 58.316 36.000 0.00 0.00 31.12 4.35
258 259 6.926826 AGTACATCATCAACTTTACACGACAA 59.073 34.615 0.00 0.00 0.00 3.18
261 262 5.090652 TCATCAACTTTACACGACAAAGC 57.909 39.130 0.00 0.00 36.63 3.51
264 265 5.554822 TCAACTTTACACGACAAAGCTTT 57.445 34.783 5.69 5.69 36.63 3.51
266 267 4.287238 ACTTTACACGACAAAGCTTTGG 57.713 40.909 35.65 24.02 42.34 3.28
268 269 4.157105 ACTTTACACGACAAAGCTTTGGTT 59.843 37.500 35.65 20.77 42.34 3.67
278 279 4.359706 CAAAGCTTTGGTTTGGACAGTAC 58.640 43.478 28.12 0.00 44.18 2.73
279 280 3.290948 AGCTTTGGTTTGGACAGTACA 57.709 42.857 0.00 0.00 0.00 2.90
307 308 2.029020 TGAAGTCGTAGCAGCAATGAGT 60.029 45.455 0.00 0.00 0.00 3.41
316 317 4.226427 AGCAGCAATGAGTTATTGGAGA 57.774 40.909 9.45 0.00 45.09 3.71
341 342 3.362399 ATCGACAGCTCTGCACCCG 62.362 63.158 0.00 0.00 0.00 5.28
343 344 3.695606 GACAGCTCTGCACCCGGA 61.696 66.667 0.73 0.00 0.00 5.14
344 345 3.941657 GACAGCTCTGCACCCGGAC 62.942 68.421 0.73 0.00 0.00 4.79
345 346 3.699894 CAGCTCTGCACCCGGACT 61.700 66.667 0.73 0.00 0.00 3.85
346 347 2.925170 AGCTCTGCACCCGGACTT 60.925 61.111 0.73 0.00 0.00 3.01
347 348 2.743928 GCTCTGCACCCGGACTTG 60.744 66.667 0.73 0.00 0.00 3.16
348 349 3.059982 CTCTGCACCCGGACTTGA 58.940 61.111 0.73 0.00 0.00 3.02
349 350 1.079543 CTCTGCACCCGGACTTGAG 60.080 63.158 0.73 0.00 0.00 3.02
350 351 2.743928 CTGCACCCGGACTTGAGC 60.744 66.667 0.73 0.00 0.00 4.26
351 352 3.535629 CTGCACCCGGACTTGAGCA 62.536 63.158 0.73 1.02 0.00 4.26
352 353 3.050275 GCACCCGGACTTGAGCAC 61.050 66.667 0.73 0.00 0.00 4.40
353 354 2.425592 CACCCGGACTTGAGCACA 59.574 61.111 0.73 0.00 0.00 4.57
354 355 1.003355 CACCCGGACTTGAGCACAT 60.003 57.895 0.73 0.00 0.00 3.21
355 356 1.021390 CACCCGGACTTGAGCACATC 61.021 60.000 0.73 0.00 0.00 3.06
356 357 1.296392 CCCGGACTTGAGCACATCA 59.704 57.895 0.73 0.00 35.62 3.07
357 358 0.107508 CCCGGACTTGAGCACATCAT 60.108 55.000 0.73 0.00 37.89 2.45
358 359 1.293924 CCGGACTTGAGCACATCATC 58.706 55.000 0.00 0.00 37.89 2.92
359 360 1.405933 CCGGACTTGAGCACATCATCA 60.406 52.381 0.00 0.00 37.89 3.07
360 361 2.349590 CGGACTTGAGCACATCATCAA 58.650 47.619 0.00 0.00 37.89 2.57
361 362 2.094894 CGGACTTGAGCACATCATCAAC 59.905 50.000 0.00 0.00 37.89 3.18
362 363 2.421424 GGACTTGAGCACATCATCAACC 59.579 50.000 0.00 0.00 37.89 3.77
363 364 3.341823 GACTTGAGCACATCATCAACCT 58.658 45.455 0.00 0.00 37.89 3.50
364 365 3.755378 GACTTGAGCACATCATCAACCTT 59.245 43.478 0.00 0.00 37.89 3.50
365 366 3.504906 ACTTGAGCACATCATCAACCTTG 59.495 43.478 0.00 0.00 37.89 3.61
366 367 3.144657 TGAGCACATCATCAACCTTGT 57.855 42.857 0.00 0.00 31.12 3.16
367 368 3.076621 TGAGCACATCATCAACCTTGTC 58.923 45.455 0.00 0.00 31.12 3.18
368 369 3.076621 GAGCACATCATCAACCTTGTCA 58.923 45.455 0.00 0.00 0.00 3.58
369 370 2.816087 AGCACATCATCAACCTTGTCAC 59.184 45.455 0.00 0.00 0.00 3.67
370 371 2.095059 GCACATCATCAACCTTGTCACC 60.095 50.000 0.00 0.00 0.00 4.02
371 372 2.489329 CACATCATCAACCTTGTCACCC 59.511 50.000 0.00 0.00 0.00 4.61
376 377 0.472471 TCAACCTTGTCACCCTCCAC 59.528 55.000 0.00 0.00 0.00 4.02
383 384 4.015406 TCACCCTCCACGCGCATT 62.015 61.111 5.73 0.00 0.00 3.56
395 396 2.321060 CGCATTGTCGATGTCGGC 59.679 61.111 0.00 0.00 45.40 5.54
409 410 1.982395 TCGGCTTGGTGGATCTCGT 60.982 57.895 0.00 0.00 0.00 4.18
431 432 0.693622 TGGTGAAGGTTATCCGGCAA 59.306 50.000 0.00 0.00 39.05 4.52
455 456 0.618458 ACCGAATGCAGGTACACCAT 59.382 50.000 0.38 0.00 40.80 3.55
553 554 1.089920 CTTGGGCGAAATCAGAGTGG 58.910 55.000 0.00 0.00 0.00 4.00
558 559 1.137086 GGCGAAATCAGAGTGGCTCTA 59.863 52.381 0.00 0.00 38.99 2.43
559 560 2.468831 GCGAAATCAGAGTGGCTCTAG 58.531 52.381 0.00 0.00 38.99 2.43
560 561 2.801342 GCGAAATCAGAGTGGCTCTAGG 60.801 54.545 0.00 0.00 38.99 3.02
561 562 2.428890 CGAAATCAGAGTGGCTCTAGGT 59.571 50.000 0.00 0.00 38.99 3.08
562 563 3.632604 CGAAATCAGAGTGGCTCTAGGTA 59.367 47.826 0.00 0.00 38.99 3.08
563 564 4.498345 CGAAATCAGAGTGGCTCTAGGTAC 60.498 50.000 0.00 0.00 38.99 3.34
564 565 2.438800 TCAGAGTGGCTCTAGGTACC 57.561 55.000 2.73 2.73 38.99 3.34
565 566 1.639108 TCAGAGTGGCTCTAGGTACCA 59.361 52.381 15.94 0.00 38.99 3.25
566 567 2.042569 TCAGAGTGGCTCTAGGTACCAA 59.957 50.000 15.94 0.00 38.99 3.67
567 568 2.832129 CAGAGTGGCTCTAGGTACCAAA 59.168 50.000 15.94 0.09 38.99 3.28
568 569 3.452627 CAGAGTGGCTCTAGGTACCAAAT 59.547 47.826 15.94 0.00 38.99 2.32
569 570 3.452627 AGAGTGGCTCTAGGTACCAAATG 59.547 47.826 15.94 2.64 39.28 2.32
570 571 3.182152 AGTGGCTCTAGGTACCAAATGT 58.818 45.455 15.94 0.00 34.63 2.71
571 572 3.197983 AGTGGCTCTAGGTACCAAATGTC 59.802 47.826 15.94 3.68 34.63 3.06
572 573 3.055385 GTGGCTCTAGGTACCAAATGTCA 60.055 47.826 15.94 6.43 34.63 3.58
573 574 3.780294 TGGCTCTAGGTACCAAATGTCAT 59.220 43.478 15.94 0.00 0.00 3.06
574 575 4.130118 GGCTCTAGGTACCAAATGTCATG 58.870 47.826 15.94 0.00 0.00 3.07
575 576 4.384208 GGCTCTAGGTACCAAATGTCATGT 60.384 45.833 15.94 0.00 0.00 3.21
576 577 4.572389 GCTCTAGGTACCAAATGTCATGTG 59.428 45.833 15.94 0.00 0.00 3.21
577 578 5.097742 TCTAGGTACCAAATGTCATGTGG 57.902 43.478 19.14 19.14 38.46 4.17
579 580 4.919774 AGGTACCAAATGTCATGTGGTA 57.080 40.909 25.42 25.42 43.90 3.25
580 581 5.249780 AGGTACCAAATGTCATGTGGTAA 57.750 39.130 29.17 15.25 46.70 2.85
581 582 5.253330 AGGTACCAAATGTCATGTGGTAAG 58.747 41.667 29.17 6.04 46.70 2.34
582 583 4.142469 GGTACCAAATGTCATGTGGTAAGC 60.142 45.833 29.17 20.07 46.70 3.09
583 584 3.495331 ACCAAATGTCATGTGGTAAGCA 58.505 40.909 24.04 0.00 43.90 3.91
584 585 3.894427 ACCAAATGTCATGTGGTAAGCAA 59.106 39.130 24.04 0.00 43.90 3.91
585 586 4.527816 ACCAAATGTCATGTGGTAAGCAAT 59.472 37.500 24.04 0.00 43.90 3.56
586 587 5.104374 CCAAATGTCATGTGGTAAGCAATC 58.896 41.667 13.37 0.00 0.00 2.67
587 588 4.989279 AATGTCATGTGGTAAGCAATCC 57.011 40.909 0.00 0.00 0.00 3.01
588 589 3.431673 TGTCATGTGGTAAGCAATCCA 57.568 42.857 0.00 0.00 0.00 3.41
589 590 3.760738 TGTCATGTGGTAAGCAATCCAA 58.239 40.909 0.00 0.00 35.38 3.53
590 591 4.148079 TGTCATGTGGTAAGCAATCCAAA 58.852 39.130 0.00 0.00 35.38 3.28
591 592 4.771577 TGTCATGTGGTAAGCAATCCAAAT 59.228 37.500 0.00 0.00 35.38 2.32
592 593 5.948758 TGTCATGTGGTAAGCAATCCAAATA 59.051 36.000 0.00 0.00 35.38 1.40
593 594 6.435591 TGTCATGTGGTAAGCAATCCAAATAA 59.564 34.615 0.00 0.00 35.38 1.40
594 595 7.123997 TGTCATGTGGTAAGCAATCCAAATAAT 59.876 33.333 0.00 0.00 35.38 1.28
595 596 7.981225 GTCATGTGGTAAGCAATCCAAATAATT 59.019 33.333 0.00 0.00 35.38 1.40
596 597 8.196771 TCATGTGGTAAGCAATCCAAATAATTC 58.803 33.333 0.00 0.00 35.38 2.17
597 598 7.473735 TGTGGTAAGCAATCCAAATAATTCA 57.526 32.000 0.00 0.00 35.38 2.57
598 599 7.901029 TGTGGTAAGCAATCCAAATAATTCAA 58.099 30.769 0.00 0.00 35.38 2.69
599 600 8.370940 TGTGGTAAGCAATCCAAATAATTCAAA 58.629 29.630 0.00 0.00 35.38 2.69
600 601 9.213799 GTGGTAAGCAATCCAAATAATTCAAAA 57.786 29.630 0.00 0.00 35.38 2.44
662 663 0.460311 GGCGGTATATCCTCGATGGG 59.540 60.000 0.00 0.00 36.20 4.00
682 683 1.148310 CTTGCCCGTGTCAGTAGTTG 58.852 55.000 0.00 0.00 0.00 3.16
738 739 1.287730 CTCACACTTCTGCAGGCGTC 61.288 60.000 15.13 0.00 0.00 5.19
881 882 3.667497 TGTGAGAGTTACAGCAGGAAG 57.333 47.619 0.00 0.00 0.00 3.46
931 932 2.285368 TGCCTCCGATTCCCACCT 60.285 61.111 0.00 0.00 0.00 4.00
1320 1357 1.757306 GGATGGCGATGTCCAGGAT 59.243 57.895 0.00 0.00 39.89 3.24
1842 1900 2.504244 CAGCCGTTCGAGGTCGTC 60.504 66.667 0.00 0.00 40.80 4.20
1954 2012 1.134401 TCAAGATGGCATTCGAGACCC 60.134 52.381 0.00 0.00 0.00 4.46
2061 2119 1.019805 GGCTTCTTCAGGTACGGCAC 61.020 60.000 0.00 0.00 0.00 5.01
2106 2167 8.076178 ACAAATCATACAGTTGCTTTTCTGTAC 58.924 33.333 7.09 0.00 45.64 2.90
2107 2168 7.744087 AATCATACAGTTGCTTTTCTGTACA 57.256 32.000 7.09 0.00 45.64 2.90
2108 2169 6.785488 TCATACAGTTGCTTTTCTGTACAG 57.215 37.500 17.17 17.17 45.64 2.74
2109 2170 5.700832 TCATACAGTTGCTTTTCTGTACAGG 59.299 40.000 22.48 7.71 45.64 4.00
2110 2171 3.886123 ACAGTTGCTTTTCTGTACAGGT 58.114 40.909 22.48 5.71 42.13 4.00
2111 2172 4.270008 ACAGTTGCTTTTCTGTACAGGTT 58.730 39.130 22.48 0.00 42.13 3.50
2112 2173 4.705023 ACAGTTGCTTTTCTGTACAGGTTT 59.295 37.500 22.48 0.00 42.13 3.27
2167 2228 3.986006 GTGACGTGGGACGAGCCA 61.986 66.667 2.62 0.00 46.05 4.75
2331 2392 0.893447 CTCCTAAACCCGTCGTTCCT 59.107 55.000 0.00 0.00 31.78 3.36
2374 2435 3.190744 GCCATCAGCACCATTATCATCAG 59.809 47.826 0.00 0.00 42.97 2.90
2590 2651 1.059098 TCAGCACTGACCTGACCATT 58.941 50.000 0.00 0.00 34.59 3.16
2742 2803 4.717629 CTCGGCAGGCGTCGTGAA 62.718 66.667 17.01 0.00 42.21 3.18
2791 2852 0.307760 GCAACTGGAACACCGACAAG 59.692 55.000 0.00 0.00 0.00 3.16
2861 2922 1.533338 GCTCGACCGATAACACATCGT 60.533 52.381 5.98 0.00 39.67 3.73
2947 3008 1.606350 GCAAGGTGTTCGTCGAGTCG 61.606 60.000 6.09 6.09 0.00 4.18
2954 3015 0.028637 GTTCGTCGAGTCGGATACCC 59.971 60.000 13.54 0.00 0.00 3.69
2959 3020 1.525535 CGAGTCGGATACCCTCGGT 60.526 63.158 4.10 0.00 45.64 4.69
2984 3045 2.279451 TCGATTGCTCGGCGATGG 60.279 61.111 11.27 0.00 45.10 3.51
3070 3131 2.632544 CCGTGTGCTCTACCGTGGA 61.633 63.158 0.00 0.00 0.00 4.02
3118 3179 1.000955 GACGAGCCTTTCAGGTGAGAA 59.999 52.381 0.00 0.00 37.80 2.87
3120 3181 1.814793 GAGCCTTTCAGGTGAGAACC 58.185 55.000 0.00 0.00 37.80 3.62
3130 3191 1.912043 AGGTGAGAACCAATCCCTCTG 59.088 52.381 0.00 0.00 0.00 3.35
3149 3210 3.493129 TCTGCGTGTTAAACTTGCTAGTG 59.507 43.478 0.36 0.00 34.01 2.74
3157 3226 7.478667 CGTGTTAAACTTGCTAGTGATGAAATC 59.521 37.037 0.36 0.00 45.83 2.17
3197 3268 2.554370 TGGACCGGTCTTTAACTTGG 57.446 50.000 32.52 0.00 0.00 3.61
3208 3279 2.605837 TTAACTTGGACTGACGCACA 57.394 45.000 0.00 0.00 0.00 4.57
3210 3281 1.967319 AACTTGGACTGACGCACAAT 58.033 45.000 0.00 0.00 0.00 2.71
3212 3283 0.518636 CTTGGACTGACGCACAATGG 59.481 55.000 0.00 0.00 0.00 3.16
3228 3300 5.170748 CACAATGGTTTAATTTCCTCTGCC 58.829 41.667 0.00 0.00 0.00 4.85
3229 3301 4.222810 ACAATGGTTTAATTTCCTCTGCCC 59.777 41.667 0.00 0.00 0.00 5.36
3484 3575 1.344438 TGCTCTTCGTGTCCAATGAGT 59.656 47.619 0.00 0.00 0.00 3.41
3486 3577 2.611518 CTCTTCGTGTCCAATGAGTCC 58.388 52.381 0.00 0.00 0.00 3.85
3516 3607 4.533815 TCTCCTCGTGTAATCCATGTACT 58.466 43.478 0.00 0.00 0.00 2.73
3525 3616 7.013942 TCGTGTAATCCATGTACTACTAGCATT 59.986 37.037 0.00 0.00 0.00 3.56
3591 3682 3.242284 CCGATGTACTACAATGCAAACCG 60.242 47.826 0.00 0.00 0.00 4.44
3641 3732 2.590645 CCCTCTCGGTCTCTCGGA 59.409 66.667 0.00 0.00 0.00 4.55
3740 3831 2.998670 CTCAGTGTCAGTGCAGTAATGG 59.001 50.000 2.50 0.00 0.00 3.16
3751 3842 3.518068 GTAATGGGTGCCGCTGCC 61.518 66.667 0.00 0.00 36.33 4.85
3866 3957 1.216122 GCTCATCGTGGAGATTGAGC 58.784 55.000 7.88 7.88 44.67 4.26
3869 3960 2.801111 CTCATCGTGGAGATTGAGCATG 59.199 50.000 0.67 0.00 37.52 4.06
3873 3964 2.101415 TCGTGGAGATTGAGCATGGTAG 59.899 50.000 0.00 0.00 0.00 3.18
3874 3965 2.804572 CGTGGAGATTGAGCATGGTAGG 60.805 54.545 0.00 0.00 0.00 3.18
3875 3966 1.770658 TGGAGATTGAGCATGGTAGGG 59.229 52.381 0.00 0.00 0.00 3.53
3876 3967 1.072965 GGAGATTGAGCATGGTAGGGG 59.927 57.143 0.00 0.00 0.00 4.79
3877 3968 0.475906 AGATTGAGCATGGTAGGGGC 59.524 55.000 0.00 0.00 0.00 5.80
3878 3969 0.475906 GATTGAGCATGGTAGGGGCT 59.524 55.000 0.00 0.00 41.35 5.19
3879 3970 0.184451 ATTGAGCATGGTAGGGGCTG 59.816 55.000 0.00 0.00 38.15 4.85
3880 3971 1.207488 TTGAGCATGGTAGGGGCTGT 61.207 55.000 0.00 0.00 38.15 4.40
3881 3972 1.207488 TGAGCATGGTAGGGGCTGTT 61.207 55.000 0.00 0.00 38.15 3.16
3882 3973 0.034089 GAGCATGGTAGGGGCTGTTT 60.034 55.000 0.00 0.00 38.15 2.83
3883 3974 0.323725 AGCATGGTAGGGGCTGTTTG 60.324 55.000 0.00 0.00 36.34 2.93
3884 3975 1.322538 GCATGGTAGGGGCTGTTTGG 61.323 60.000 0.00 0.00 0.00 3.28
3885 3976 0.039618 CATGGTAGGGGCTGTTTGGT 59.960 55.000 0.00 0.00 0.00 3.67
3886 3977 0.783850 ATGGTAGGGGCTGTTTGGTT 59.216 50.000 0.00 0.00 0.00 3.67
3887 3978 0.558712 TGGTAGGGGCTGTTTGGTTT 59.441 50.000 0.00 0.00 0.00 3.27
3888 3979 0.966179 GGTAGGGGCTGTTTGGTTTG 59.034 55.000 0.00 0.00 0.00 2.93
3889 3980 1.699730 GTAGGGGCTGTTTGGTTTGT 58.300 50.000 0.00 0.00 0.00 2.83
3890 3981 1.339929 GTAGGGGCTGTTTGGTTTGTG 59.660 52.381 0.00 0.00 0.00 3.33
3891 3982 0.032615 AGGGGCTGTTTGGTTTGTGA 60.033 50.000 0.00 0.00 0.00 3.58
3892 3983 0.104120 GGGGCTGTTTGGTTTGTGAC 59.896 55.000 0.00 0.00 0.00 3.67
3893 3984 1.111277 GGGCTGTTTGGTTTGTGACT 58.889 50.000 0.00 0.00 0.00 3.41
3894 3985 2.303175 GGGCTGTTTGGTTTGTGACTA 58.697 47.619 0.00 0.00 0.00 2.59
3895 3986 2.691011 GGGCTGTTTGGTTTGTGACTAA 59.309 45.455 0.00 0.00 0.00 2.24
3896 3987 3.320826 GGGCTGTTTGGTTTGTGACTAAT 59.679 43.478 0.00 0.00 0.00 1.73
3897 3988 4.202212 GGGCTGTTTGGTTTGTGACTAATT 60.202 41.667 0.00 0.00 0.00 1.40
3898 3989 5.356426 GGCTGTTTGGTTTGTGACTAATTT 58.644 37.500 0.00 0.00 0.00 1.82
3899 3990 5.815222 GGCTGTTTGGTTTGTGACTAATTTT 59.185 36.000 0.00 0.00 0.00 1.82
3900 3991 6.238076 GGCTGTTTGGTTTGTGACTAATTTTG 60.238 38.462 0.00 0.00 0.00 2.44
3901 3992 6.654793 TGTTTGGTTTGTGACTAATTTTGC 57.345 33.333 0.00 0.00 0.00 3.68
3902 3993 5.582665 TGTTTGGTTTGTGACTAATTTTGCC 59.417 36.000 0.00 0.00 0.00 4.52
3903 3994 5.344743 TTGGTTTGTGACTAATTTTGCCA 57.655 34.783 0.00 0.00 0.00 4.92
3904 3995 5.344743 TGGTTTGTGACTAATTTTGCCAA 57.655 34.783 0.00 0.00 0.00 4.52
3905 3996 5.734720 TGGTTTGTGACTAATTTTGCCAAA 58.265 33.333 0.00 0.00 0.00 3.28
3906 3997 6.173339 TGGTTTGTGACTAATTTTGCCAAAA 58.827 32.000 4.87 4.87 34.41 2.44
3907 3998 6.655003 TGGTTTGTGACTAATTTTGCCAAAAA 59.345 30.769 6.70 0.00 39.53 1.94
3908 3999 7.337942 TGGTTTGTGACTAATTTTGCCAAAAAT 59.662 29.630 6.70 0.83 45.81 1.82
3917 4008 4.564940 TTTTGCCAAAAATTGCCACATC 57.435 36.364 0.00 0.00 30.24 3.06
3918 4009 3.488778 TTGCCAAAAATTGCCACATCT 57.511 38.095 0.00 0.00 0.00 2.90
3919 4010 4.613925 TTGCCAAAAATTGCCACATCTA 57.386 36.364 0.00 0.00 0.00 1.98
3920 4011 4.613925 TGCCAAAAATTGCCACATCTAA 57.386 36.364 0.00 0.00 0.00 2.10
3921 4012 4.314121 TGCCAAAAATTGCCACATCTAAC 58.686 39.130 0.00 0.00 0.00 2.34
3922 4013 3.367630 GCCAAAAATTGCCACATCTAACG 59.632 43.478 0.00 0.00 0.00 3.18
3923 4014 4.555262 CCAAAAATTGCCACATCTAACGT 58.445 39.130 0.00 0.00 0.00 3.99
3924 4015 4.987912 CCAAAAATTGCCACATCTAACGTT 59.012 37.500 5.88 5.88 0.00 3.99
3925 4016 6.153067 CCAAAAATTGCCACATCTAACGTTA 58.847 36.000 7.94 7.94 0.00 3.18
3926 4017 6.307800 CCAAAAATTGCCACATCTAACGTTAG 59.692 38.462 26.13 26.13 0.00 2.34
3927 4018 5.560966 AAATTGCCACATCTAACGTTAGG 57.439 39.130 29.87 19.40 0.00 2.69
3928 4019 2.018542 TGCCACATCTAACGTTAGGC 57.981 50.000 29.87 25.77 40.93 3.93
3929 4020 2.018542 GCCACATCTAACGTTAGGCA 57.981 50.000 29.87 15.82 40.29 4.75
3930 4021 2.289756 TGCCACATCTAACGTTAGGCAA 60.290 45.455 29.87 15.15 46.55 4.52
3931 4022 2.351726 GCCACATCTAACGTTAGGCAAG 59.648 50.000 29.87 20.12 40.29 4.01
3932 4023 3.596214 CCACATCTAACGTTAGGCAAGT 58.404 45.455 29.87 20.65 0.00 3.16
3933 4024 4.000988 CCACATCTAACGTTAGGCAAGTT 58.999 43.478 29.87 10.23 0.00 2.66
3934 4025 4.454504 CCACATCTAACGTTAGGCAAGTTT 59.545 41.667 29.87 9.32 0.00 2.66
3935 4026 5.382303 CACATCTAACGTTAGGCAAGTTTG 58.618 41.667 29.87 18.62 0.00 2.93
3936 4027 5.178623 CACATCTAACGTTAGGCAAGTTTGA 59.821 40.000 29.87 12.02 35.08 2.69
3937 4028 5.178809 ACATCTAACGTTAGGCAAGTTTGAC 59.821 40.000 29.87 0.00 33.90 3.18
3938 4029 4.060205 TCTAACGTTAGGCAAGTTTGACC 58.940 43.478 29.87 0.00 36.67 4.02
3939 4030 2.335316 ACGTTAGGCAAGTTTGACCA 57.665 45.000 0.00 0.00 36.67 4.02
3940 4031 2.645802 ACGTTAGGCAAGTTTGACCAA 58.354 42.857 0.00 0.00 36.67 3.67
3941 4032 2.356695 ACGTTAGGCAAGTTTGACCAAC 59.643 45.455 0.00 0.00 36.67 3.77
3942 4033 2.601266 CGTTAGGCAAGTTTGACCAACG 60.601 50.000 14.94 14.94 40.75 4.10
3943 4034 2.335316 TAGGCAAGTTTGACCAACGT 57.665 45.000 0.00 0.00 40.75 3.99
3944 4035 2.335316 AGGCAAGTTTGACCAACGTA 57.665 45.000 0.00 0.00 40.75 3.57
3945 4036 2.218603 AGGCAAGTTTGACCAACGTAG 58.781 47.619 0.00 0.00 40.75 3.51
3946 4037 1.265905 GGCAAGTTTGACCAACGTAGG 59.734 52.381 0.00 0.00 40.75 3.18
3947 4038 1.944709 GCAAGTTTGACCAACGTAGGT 59.055 47.619 0.00 0.00 46.82 3.08
3948 4039 2.286772 GCAAGTTTGACCAACGTAGGTG 60.287 50.000 0.00 0.00 43.38 4.00
3949 4040 3.199677 CAAGTTTGACCAACGTAGGTGA 58.800 45.455 0.00 0.00 43.38 4.02
3950 4041 3.107642 AGTTTGACCAACGTAGGTGAG 57.892 47.619 0.00 0.00 43.38 3.51
3951 4042 2.433239 AGTTTGACCAACGTAGGTGAGT 59.567 45.455 0.00 0.00 43.38 3.41
3952 4043 2.519377 TTGACCAACGTAGGTGAGTG 57.481 50.000 0.00 0.00 43.38 3.51
3953 4044 1.405872 TGACCAACGTAGGTGAGTGT 58.594 50.000 0.00 0.00 43.38 3.55
3954 4045 1.758280 TGACCAACGTAGGTGAGTGTT 59.242 47.619 0.00 0.00 43.38 3.32
3955 4046 2.168936 TGACCAACGTAGGTGAGTGTTT 59.831 45.455 0.00 0.00 43.38 2.83
3956 4047 2.542595 GACCAACGTAGGTGAGTGTTTG 59.457 50.000 0.00 0.00 43.38 2.93
3957 4048 1.871039 CCAACGTAGGTGAGTGTTTGG 59.129 52.381 0.00 0.00 0.00 3.28
3958 4049 2.557317 CAACGTAGGTGAGTGTTTGGT 58.443 47.619 0.00 0.00 0.00 3.67
3959 4050 2.940410 CAACGTAGGTGAGTGTTTGGTT 59.060 45.455 0.00 0.00 0.00 3.67
3960 4051 3.271055 ACGTAGGTGAGTGTTTGGTTT 57.729 42.857 0.00 0.00 0.00 3.27
3961 4052 4.405116 ACGTAGGTGAGTGTTTGGTTTA 57.595 40.909 0.00 0.00 0.00 2.01
3962 4053 4.768583 ACGTAGGTGAGTGTTTGGTTTAA 58.231 39.130 0.00 0.00 0.00 1.52
3963 4054 4.812626 ACGTAGGTGAGTGTTTGGTTTAAG 59.187 41.667 0.00 0.00 0.00 1.85
3964 4055 4.319261 CGTAGGTGAGTGTTTGGTTTAAGC 60.319 45.833 0.00 0.00 0.00 3.09
3965 4056 2.956333 AGGTGAGTGTTTGGTTTAAGCC 59.044 45.455 0.54 0.54 0.00 4.35
3966 4057 2.691011 GGTGAGTGTTTGGTTTAAGCCA 59.309 45.455 6.99 6.99 36.62 4.75
3967 4058 3.490249 GGTGAGTGTTTGGTTTAAGCCAC 60.490 47.826 11.00 1.21 38.42 5.01
3968 4059 3.129638 GTGAGTGTTTGGTTTAAGCCACA 59.870 43.478 11.00 1.20 38.42 4.17
3969 4060 3.957497 TGAGTGTTTGGTTTAAGCCACAT 59.043 39.130 11.00 0.00 38.42 3.21
3970 4061 4.037446 TGAGTGTTTGGTTTAAGCCACATC 59.963 41.667 11.00 5.28 38.42 3.06
3971 4062 4.215109 AGTGTTTGGTTTAAGCCACATCT 58.785 39.130 11.00 5.17 38.42 2.90
3972 4063 4.649218 AGTGTTTGGTTTAAGCCACATCTT 59.351 37.500 11.00 0.00 38.42 2.40
3973 4064 5.830991 AGTGTTTGGTTTAAGCCACATCTTA 59.169 36.000 11.00 0.00 38.42 2.10
3974 4065 6.016276 AGTGTTTGGTTTAAGCCACATCTTAG 60.016 38.462 11.00 0.00 38.42 2.18
3975 4066 5.242838 TGTTTGGTTTAAGCCACATCTTAGG 59.757 40.000 11.00 0.00 38.42 2.69
3982 4073 3.575506 CCACATCTTAGGCAAGCCA 57.424 52.632 14.40 0.00 38.92 4.75
3983 4074 1.098050 CCACATCTTAGGCAAGCCAC 58.902 55.000 14.40 0.00 38.92 5.01
3984 4075 1.614051 CCACATCTTAGGCAAGCCACA 60.614 52.381 14.40 0.00 38.92 4.17
3985 4076 2.372264 CACATCTTAGGCAAGCCACAT 58.628 47.619 14.40 0.00 38.92 3.21
3986 4077 2.756760 CACATCTTAGGCAAGCCACATT 59.243 45.455 14.40 0.00 38.92 2.71
3987 4078 3.194116 CACATCTTAGGCAAGCCACATTT 59.806 43.478 14.40 0.00 38.92 2.32
3988 4079 3.194116 ACATCTTAGGCAAGCCACATTTG 59.806 43.478 14.40 7.69 38.92 2.32
4000 4091 0.896923 CACATTTGGACCCCACATGG 59.103 55.000 14.40 0.00 43.61 3.66
4001 4092 0.904394 ACATTTGGACCCCACATGGC 60.904 55.000 14.40 0.00 43.61 4.40
4002 4093 0.903924 CATTTGGACCCCACATGGCA 60.904 55.000 0.00 0.00 37.86 4.92
4003 4094 0.043032 ATTTGGACCCCACATGGCAT 59.957 50.000 0.00 0.00 30.78 4.40
4004 4095 0.707024 TTTGGACCCCACATGGCATA 59.293 50.000 0.00 0.00 30.78 3.14
4005 4096 0.033601 TTGGACCCCACATGGCATAC 60.034 55.000 0.00 0.00 30.78 2.39
4006 4097 1.210885 TGGACCCCACATGGCATACA 61.211 55.000 0.00 0.00 0.00 2.29
4007 4098 0.751643 GGACCCCACATGGCATACAC 60.752 60.000 0.00 0.00 0.00 2.90
4008 4099 0.255890 GACCCCACATGGCATACACT 59.744 55.000 0.00 0.00 0.00 3.55
4009 4100 0.704076 ACCCCACATGGCATACACTT 59.296 50.000 0.00 0.00 0.00 3.16
4010 4101 1.077005 ACCCCACATGGCATACACTTT 59.923 47.619 0.00 0.00 0.00 2.66
4011 4102 1.750778 CCCCACATGGCATACACTTTC 59.249 52.381 0.00 0.00 0.00 2.62
4012 4103 1.750778 CCCACATGGCATACACTTTCC 59.249 52.381 0.00 0.00 0.00 3.13
4013 4104 2.621407 CCCACATGGCATACACTTTCCT 60.621 50.000 0.00 0.00 0.00 3.36
4014 4105 3.091545 CCACATGGCATACACTTTCCTT 58.908 45.455 0.00 0.00 0.00 3.36
4015 4106 4.269183 CCACATGGCATACACTTTCCTTA 58.731 43.478 0.00 0.00 0.00 2.69
4016 4107 4.336433 CCACATGGCATACACTTTCCTTAG 59.664 45.833 0.00 0.00 0.00 2.18
4017 4108 4.336433 CACATGGCATACACTTTCCTTAGG 59.664 45.833 0.00 0.00 0.00 2.69
4018 4109 2.999331 TGGCATACACTTTCCTTAGGC 58.001 47.619 0.00 0.00 0.00 3.93
4019 4110 2.576191 TGGCATACACTTTCCTTAGGCT 59.424 45.455 0.00 0.00 0.00 4.58
4020 4111 3.010138 TGGCATACACTTTCCTTAGGCTT 59.990 43.478 0.00 0.00 0.00 4.35
4021 4112 3.378427 GGCATACACTTTCCTTAGGCTTG 59.622 47.826 0.00 0.00 0.00 4.01
4022 4113 3.181496 GCATACACTTTCCTTAGGCTTGC 60.181 47.826 0.00 0.00 0.00 4.01
4023 4114 1.911057 ACACTTTCCTTAGGCTTGCC 58.089 50.000 2.97 2.97 0.00 4.52
4024 4115 1.144913 ACACTTTCCTTAGGCTTGCCA 59.855 47.619 14.54 0.00 0.00 4.92
4025 4116 2.238521 CACTTTCCTTAGGCTTGCCAA 58.761 47.619 14.54 5.54 0.00 4.52
4026 4117 2.627699 CACTTTCCTTAGGCTTGCCAAA 59.372 45.455 14.54 4.41 0.00 3.28
4027 4118 3.259123 CACTTTCCTTAGGCTTGCCAAAT 59.741 43.478 14.54 0.00 0.00 2.32
4028 4119 3.903714 ACTTTCCTTAGGCTTGCCAAATT 59.096 39.130 14.54 0.00 0.00 1.82
4029 4120 3.959535 TTCCTTAGGCTTGCCAAATTG 57.040 42.857 14.54 0.00 0.00 2.32
4030 4121 2.888212 TCCTTAGGCTTGCCAAATTGT 58.112 42.857 14.54 0.00 0.00 2.71
4031 4122 2.562298 TCCTTAGGCTTGCCAAATTGTG 59.438 45.455 14.54 0.00 0.00 3.33
4044 4135 4.885413 CCAAATTGTGGCTCTCATTTTGA 58.115 39.130 16.97 0.00 41.72 2.69
4045 4136 5.484715 CCAAATTGTGGCTCTCATTTTGAT 58.515 37.500 16.97 0.00 41.72 2.57
4046 4137 6.632909 CCAAATTGTGGCTCTCATTTTGATA 58.367 36.000 16.97 0.00 41.72 2.15
4047 4138 7.098477 CCAAATTGTGGCTCTCATTTTGATAA 58.902 34.615 16.97 0.00 41.72 1.75
4048 4139 7.603404 CCAAATTGTGGCTCTCATTTTGATAAA 59.397 33.333 16.97 0.00 41.72 1.40
4049 4140 9.158233 CAAATTGTGGCTCTCATTTTGATAAAT 57.842 29.630 13.43 0.00 37.87 1.40
4050 4141 9.729281 AAATTGTGGCTCTCATTTTGATAAATT 57.271 25.926 0.00 0.00 31.63 1.82
4053 4144 9.638239 TTGTGGCTCTCATTTTGATAAATTAAC 57.362 29.630 0.00 0.00 31.63 2.01
4054 4145 8.250332 TGTGGCTCTCATTTTGATAAATTAACC 58.750 33.333 0.00 0.00 31.63 2.85
4055 4146 8.470002 GTGGCTCTCATTTTGATAAATTAACCT 58.530 33.333 0.00 0.00 31.63 3.50
4056 4147 9.034800 TGGCTCTCATTTTGATAAATTAACCTT 57.965 29.630 0.00 0.00 31.63 3.50
4069 4160 9.569167 GATAAATTAACCTTAGTCAAGTTTGGC 57.431 33.333 0.00 0.00 0.00 4.52
4070 4161 6.969993 AATTAACCTTAGTCAAGTTTGGCA 57.030 33.333 0.00 0.00 34.61 4.92
4071 4162 6.969993 ATTAACCTTAGTCAAGTTTGGCAA 57.030 33.333 0.00 0.00 34.61 4.52
4072 4163 6.777213 TTAACCTTAGTCAAGTTTGGCAAA 57.223 33.333 8.93 8.93 34.61 3.68
4073 4164 5.669164 AACCTTAGTCAAGTTTGGCAAAA 57.331 34.783 15.29 0.00 34.61 2.44
4074 4165 5.669164 ACCTTAGTCAAGTTTGGCAAAAA 57.331 34.783 15.29 2.55 34.61 1.94
4075 4166 6.233905 ACCTTAGTCAAGTTTGGCAAAAAT 57.766 33.333 15.29 3.54 34.61 1.82
4076 4167 6.048509 ACCTTAGTCAAGTTTGGCAAAAATG 58.951 36.000 15.29 15.81 34.61 2.32
4077 4168 6.048509 CCTTAGTCAAGTTTGGCAAAAATGT 58.951 36.000 15.29 4.72 34.61 2.71
4078 4169 6.018832 CCTTAGTCAAGTTTGGCAAAAATGTG 60.019 38.462 15.29 10.16 34.61 3.21
4079 4170 4.831107 AGTCAAGTTTGGCAAAAATGTGT 58.169 34.783 15.29 5.91 34.61 3.72
4080 4171 4.630940 AGTCAAGTTTGGCAAAAATGTGTG 59.369 37.500 15.29 6.81 34.61 3.82
4081 4172 3.937706 TCAAGTTTGGCAAAAATGTGTGG 59.062 39.130 15.29 0.00 0.00 4.17
4082 4173 2.287769 AGTTTGGCAAAAATGTGTGGC 58.712 42.857 15.29 0.00 40.55 5.01
4085 4176 2.408271 TGGCAAAAATGTGTGGCAAA 57.592 40.000 0.00 0.00 46.13 3.68
4086 4177 2.286872 TGGCAAAAATGTGTGGCAAAG 58.713 42.857 0.00 0.00 46.13 2.77
4087 4178 2.287769 GGCAAAAATGTGTGGCAAAGT 58.712 42.857 0.00 0.00 39.93 2.66
4088 4179 2.031930 GGCAAAAATGTGTGGCAAAGTG 59.968 45.455 0.00 0.00 39.93 3.16
4089 4180 2.677337 GCAAAAATGTGTGGCAAAGTGT 59.323 40.909 0.00 0.00 0.00 3.55
4090 4181 3.485546 GCAAAAATGTGTGGCAAAGTGTG 60.486 43.478 0.00 0.00 0.00 3.82
4091 4182 2.600470 AAATGTGTGGCAAAGTGTGG 57.400 45.000 0.00 0.00 0.00 4.17
4100 4191 1.986698 GCAAAGTGTGGCAATGCTAG 58.013 50.000 4.82 0.00 34.29 3.42
4101 4192 1.270550 GCAAAGTGTGGCAATGCTAGT 59.729 47.619 4.82 0.00 34.29 2.57
4102 4193 2.669391 GCAAAGTGTGGCAATGCTAGTC 60.669 50.000 4.82 0.00 34.29 2.59
4103 4194 1.826385 AAGTGTGGCAATGCTAGTCC 58.174 50.000 4.82 0.00 0.00 3.85
4104 4195 0.987294 AGTGTGGCAATGCTAGTCCT 59.013 50.000 4.82 0.00 0.00 3.85
4105 4196 2.187958 AGTGTGGCAATGCTAGTCCTA 58.812 47.619 4.82 0.00 0.00 2.94
4106 4197 2.571653 AGTGTGGCAATGCTAGTCCTAA 59.428 45.455 4.82 0.00 0.00 2.69
4107 4198 3.009033 AGTGTGGCAATGCTAGTCCTAAA 59.991 43.478 4.82 0.00 0.00 1.85
4108 4199 3.756434 GTGTGGCAATGCTAGTCCTAAAA 59.244 43.478 4.82 0.00 0.00 1.52
4109 4200 4.399303 GTGTGGCAATGCTAGTCCTAAAAT 59.601 41.667 4.82 0.00 0.00 1.82
4110 4201 4.640201 TGTGGCAATGCTAGTCCTAAAATC 59.360 41.667 4.82 0.00 0.00 2.17
4111 4202 4.640201 GTGGCAATGCTAGTCCTAAAATCA 59.360 41.667 4.82 0.00 0.00 2.57
4112 4203 5.125417 GTGGCAATGCTAGTCCTAAAATCAA 59.875 40.000 4.82 0.00 0.00 2.57
4113 4204 5.714333 TGGCAATGCTAGTCCTAAAATCAAA 59.286 36.000 4.82 0.00 0.00 2.69
4114 4205 6.036470 GGCAATGCTAGTCCTAAAATCAAAC 58.964 40.000 4.82 0.00 0.00 2.93
4115 4206 6.350110 GGCAATGCTAGTCCTAAAATCAAACA 60.350 38.462 4.82 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 2.153401 AAGTGGGCTAGTGGGCACA 61.153 57.895 1.66 0.00 43.93 4.57
101 102 4.115516 CGAGTGGACATGTTGGAATCTAG 58.884 47.826 0.00 0.00 0.00 2.43
155 156 3.477530 GGTTGCTGACCTCAACTAACTT 58.522 45.455 5.94 0.00 45.55 2.66
187 188 1.875514 GAGCATTGTGAGACAGCAACA 59.124 47.619 0.00 0.00 0.00 3.33
193 194 4.276058 TCTCATTGAGCATTGTGAGACA 57.724 40.909 8.89 0.00 41.40 3.41
198 199 4.490743 TGCAATTCTCATTGAGCATTGTG 58.509 39.130 28.03 14.05 42.31 3.33
221 222 5.269189 TGATGATGTACTCAAGTCCCAGTA 58.731 41.667 0.00 0.00 37.44 2.74
235 236 7.570507 GCTTTGTCGTGTAAAGTTGATGATGTA 60.571 37.037 0.00 0.00 37.44 2.29
247 248 4.705337 AACCAAAGCTTTGTCGTGTAAA 57.295 36.364 31.67 0.00 36.45 2.01
252 253 2.096248 TCCAAACCAAAGCTTTGTCGT 58.904 42.857 31.67 22.52 36.45 4.34
255 256 2.831526 ACTGTCCAAACCAAAGCTTTGT 59.168 40.909 31.67 19.72 36.45 2.83
258 259 3.626930 TGTACTGTCCAAACCAAAGCTT 58.373 40.909 0.00 0.00 0.00 3.74
261 262 6.568869 TCAAATTGTACTGTCCAAACCAAAG 58.431 36.000 0.00 0.00 0.00 2.77
264 265 5.830457 TCATCAAATTGTACTGTCCAAACCA 59.170 36.000 0.00 0.00 0.00 3.67
266 267 7.425606 ACTTCATCAAATTGTACTGTCCAAAC 58.574 34.615 0.00 0.00 0.00 2.93
268 269 6.073276 CGACTTCATCAAATTGTACTGTCCAA 60.073 38.462 0.00 0.00 0.00 3.53
272 273 6.090898 GCTACGACTTCATCAAATTGTACTGT 59.909 38.462 0.00 0.00 0.00 3.55
274 275 6.163476 TGCTACGACTTCATCAAATTGTACT 58.837 36.000 0.00 0.00 0.00 2.73
278 279 4.142838 TGCTGCTACGACTTCATCAAATTG 60.143 41.667 0.00 0.00 0.00 2.32
279 280 4.002982 TGCTGCTACGACTTCATCAAATT 58.997 39.130 0.00 0.00 0.00 1.82
307 308 1.883926 TCGATCCGCGATCTCCAATAA 59.116 47.619 8.23 0.00 45.59 1.40
341 342 2.421424 GGTTGATGATGTGCTCAAGTCC 59.579 50.000 0.00 0.00 37.44 3.85
342 343 3.341823 AGGTTGATGATGTGCTCAAGTC 58.658 45.455 0.00 0.00 37.44 3.01
343 344 3.430042 AGGTTGATGATGTGCTCAAGT 57.570 42.857 0.00 0.00 37.44 3.16
344 345 3.504906 ACAAGGTTGATGATGTGCTCAAG 59.495 43.478 0.00 0.00 37.44 3.02
345 346 3.489355 ACAAGGTTGATGATGTGCTCAA 58.511 40.909 0.00 0.00 37.44 3.02
346 347 3.076621 GACAAGGTTGATGATGTGCTCA 58.923 45.455 0.00 0.00 38.53 4.26
347 348 3.076621 TGACAAGGTTGATGATGTGCTC 58.923 45.455 0.00 0.00 0.00 4.26
348 349 2.816087 GTGACAAGGTTGATGATGTGCT 59.184 45.455 0.00 0.00 0.00 4.40
349 350 2.095059 GGTGACAAGGTTGATGATGTGC 60.095 50.000 0.00 0.00 0.00 4.57
350 351 2.489329 GGGTGACAAGGTTGATGATGTG 59.511 50.000 0.00 0.00 0.00 3.21
351 352 2.376518 AGGGTGACAAGGTTGATGATGT 59.623 45.455 0.00 0.00 0.00 3.06
352 353 3.012518 GAGGGTGACAAGGTTGATGATG 58.987 50.000 0.00 0.00 0.00 3.07
353 354 2.025887 GGAGGGTGACAAGGTTGATGAT 60.026 50.000 0.00 0.00 0.00 2.45
354 355 1.351017 GGAGGGTGACAAGGTTGATGA 59.649 52.381 0.00 0.00 0.00 2.92
355 356 1.073763 TGGAGGGTGACAAGGTTGATG 59.926 52.381 0.00 0.00 0.00 3.07
356 357 1.073923 GTGGAGGGTGACAAGGTTGAT 59.926 52.381 0.00 0.00 0.00 2.57
357 358 0.472471 GTGGAGGGTGACAAGGTTGA 59.528 55.000 0.00 0.00 0.00 3.18
358 359 0.884704 CGTGGAGGGTGACAAGGTTG 60.885 60.000 0.00 0.00 0.00 3.77
359 360 1.450211 CGTGGAGGGTGACAAGGTT 59.550 57.895 0.00 0.00 0.00 3.50
360 361 3.148084 CGTGGAGGGTGACAAGGT 58.852 61.111 0.00 0.00 0.00 3.50
361 362 2.358737 GCGTGGAGGGTGACAAGG 60.359 66.667 0.00 0.00 0.00 3.61
362 363 2.738521 CGCGTGGAGGGTGACAAG 60.739 66.667 0.00 0.00 0.00 3.16
363 364 4.980805 GCGCGTGGAGGGTGACAA 62.981 66.667 8.43 0.00 34.93 3.18
365 366 4.760047 ATGCGCGTGGAGGGTGAC 62.760 66.667 8.43 0.00 34.93 3.67
366 367 4.015406 AATGCGCGTGGAGGGTGA 62.015 61.111 8.43 0.00 34.93 4.02
367 368 3.803082 CAATGCGCGTGGAGGGTG 61.803 66.667 8.43 0.00 34.93 4.61
368 369 4.329545 ACAATGCGCGTGGAGGGT 62.330 61.111 11.94 0.00 34.93 4.34
369 370 3.499737 GACAATGCGCGTGGAGGG 61.500 66.667 11.94 0.00 0.00 4.30
370 371 3.853330 CGACAATGCGCGTGGAGG 61.853 66.667 11.94 0.00 0.00 4.30
371 372 2.167219 ATCGACAATGCGCGTGGAG 61.167 57.895 11.94 4.43 0.00 3.86
376 377 2.054840 CGACATCGACAATGCGCG 60.055 61.111 0.00 0.00 43.02 6.86
381 382 0.036388 ACCAAGCCGACATCGACAAT 60.036 50.000 2.09 0.00 43.02 2.71
383 384 1.374125 CACCAAGCCGACATCGACA 60.374 57.895 2.09 0.00 43.02 4.35
395 396 0.458543 CCACGACGAGATCCACCAAG 60.459 60.000 0.00 0.00 0.00 3.61
409 410 0.533491 CCGGATAACCTTCACCACGA 59.467 55.000 0.00 0.00 0.00 4.35
431 432 2.747446 GTGTACCTGCATTCGGTTGAAT 59.253 45.455 0.90 0.00 45.70 2.57
455 456 5.697473 TGAAATTCGATGCAAAACACCTA 57.303 34.783 0.00 0.00 0.00 3.08
553 554 4.572389 CACATGACATTTGGTACCTAGAGC 59.428 45.833 14.36 0.00 0.00 4.09
558 559 3.806949 ACCACATGACATTTGGTACCT 57.193 42.857 22.10 0.49 42.04 3.08
559 560 4.142469 GCTTACCACATGACATTTGGTACC 60.142 45.833 26.18 18.37 43.97 3.34
560 561 4.457603 TGCTTACCACATGACATTTGGTAC 59.542 41.667 26.18 18.48 43.97 3.34
561 562 4.657013 TGCTTACCACATGACATTTGGTA 58.343 39.130 23.69 23.69 42.04 3.25
562 563 3.495331 TGCTTACCACATGACATTTGGT 58.505 40.909 25.52 25.52 45.78 3.67
563 564 4.517952 TTGCTTACCACATGACATTTGG 57.482 40.909 17.40 17.40 36.39 3.28
564 565 5.104374 GGATTGCTTACCACATGACATTTG 58.896 41.667 0.00 0.00 0.00 2.32
565 566 4.771577 TGGATTGCTTACCACATGACATTT 59.228 37.500 0.00 0.00 0.00 2.32
566 567 4.343231 TGGATTGCTTACCACATGACATT 58.657 39.130 0.00 0.00 0.00 2.71
567 568 3.966979 TGGATTGCTTACCACATGACAT 58.033 40.909 0.00 0.00 0.00 3.06
568 569 3.431673 TGGATTGCTTACCACATGACA 57.568 42.857 0.00 0.00 0.00 3.58
569 570 4.782019 TTTGGATTGCTTACCACATGAC 57.218 40.909 0.00 0.00 35.81 3.06
570 571 7.658525 ATTATTTGGATTGCTTACCACATGA 57.341 32.000 0.00 0.00 35.81 3.07
571 572 7.980662 TGAATTATTTGGATTGCTTACCACATG 59.019 33.333 0.00 0.00 35.81 3.21
572 573 8.076910 TGAATTATTTGGATTGCTTACCACAT 57.923 30.769 0.00 0.00 35.81 3.21
573 574 7.473735 TGAATTATTTGGATTGCTTACCACA 57.526 32.000 0.00 0.00 35.81 4.17
574 575 8.770438 TTTGAATTATTTGGATTGCTTACCAC 57.230 30.769 0.00 0.00 35.81 4.16
575 576 9.784531 TTTTTGAATTATTTGGATTGCTTACCA 57.215 25.926 0.00 0.00 0.00 3.25
591 592 9.619316 CGTGACATTTGGTATCTTTTTGAATTA 57.381 29.630 0.00 0.00 0.00 1.40
592 593 8.356657 TCGTGACATTTGGTATCTTTTTGAATT 58.643 29.630 0.00 0.00 0.00 2.17
593 594 7.881142 TCGTGACATTTGGTATCTTTTTGAAT 58.119 30.769 0.00 0.00 0.00 2.57
594 595 7.265647 TCGTGACATTTGGTATCTTTTTGAA 57.734 32.000 0.00 0.00 0.00 2.69
595 596 6.869315 TCGTGACATTTGGTATCTTTTTGA 57.131 33.333 0.00 0.00 0.00 2.69
596 597 7.304735 TGATCGTGACATTTGGTATCTTTTTG 58.695 34.615 0.00 0.00 0.00 2.44
597 598 7.447374 TGATCGTGACATTTGGTATCTTTTT 57.553 32.000 0.00 0.00 0.00 1.94
598 599 7.630242 ATGATCGTGACATTTGGTATCTTTT 57.370 32.000 0.00 0.00 0.00 2.27
599 600 8.731275 TTATGATCGTGACATTTGGTATCTTT 57.269 30.769 0.00 0.00 0.00 2.52
600 601 8.777413 CATTATGATCGTGACATTTGGTATCTT 58.223 33.333 0.00 0.00 0.00 2.40
662 663 0.602905 AACTACTGACACGGGCAAGC 60.603 55.000 0.00 0.00 0.00 4.01
682 683 2.852748 CACTGCACAGTACTCGTACTC 58.147 52.381 6.76 0.00 43.98 2.59
706 707 1.006832 GTGTGAGTTTCAGTGTGCGT 58.993 50.000 0.00 0.00 0.00 5.24
881 882 2.280592 AACGAACGAGTGGTGCCC 60.281 61.111 0.14 0.00 0.00 5.36
931 932 2.363711 GATGGACTGGTGGCGCGATA 62.364 60.000 12.10 0.00 0.00 2.92
1115 1116 1.471684 CTTGCGGGAAGTAGTAGACGT 59.528 52.381 0.53 0.00 0.00 4.34
1338 1378 0.249405 GCTTCTCCTGCTCCTCATCG 60.249 60.000 0.00 0.00 0.00 3.84
2061 2119 4.446413 GGCGGGGGTGTAGTGTCG 62.446 72.222 0.00 0.00 0.00 4.35
2062 2120 2.886134 TTGGCGGGGGTGTAGTGTC 61.886 63.158 0.00 0.00 0.00 3.67
2063 2121 2.850130 TTGGCGGGGGTGTAGTGT 60.850 61.111 0.00 0.00 0.00 3.55
2064 2122 2.359478 GTTGGCGGGGGTGTAGTG 60.359 66.667 0.00 0.00 0.00 2.74
2065 2123 1.997256 TTTGTTGGCGGGGGTGTAGT 61.997 55.000 0.00 0.00 0.00 2.73
2106 2167 1.264288 GTGAGCGAAACCTGAAACCTG 59.736 52.381 0.00 0.00 0.00 4.00
2107 2168 1.141053 AGTGAGCGAAACCTGAAACCT 59.859 47.619 0.00 0.00 0.00 3.50
2108 2169 1.594331 AGTGAGCGAAACCTGAAACC 58.406 50.000 0.00 0.00 0.00 3.27
2109 2170 2.354821 ACAAGTGAGCGAAACCTGAAAC 59.645 45.455 0.00 0.00 0.00 2.78
2110 2171 2.612212 GACAAGTGAGCGAAACCTGAAA 59.388 45.455 0.00 0.00 0.00 2.69
2111 2172 2.210116 GACAAGTGAGCGAAACCTGAA 58.790 47.619 0.00 0.00 0.00 3.02
2112 2173 1.138069 TGACAAGTGAGCGAAACCTGA 59.862 47.619 0.00 0.00 0.00 3.86
2167 2228 2.630889 TCACATTCTGGAGGAGGTCT 57.369 50.000 0.00 0.00 0.00 3.85
2374 2435 1.065928 CGGATGGTAGCTGTCGGTC 59.934 63.158 0.00 0.00 0.00 4.79
2762 2823 2.980213 TTCCAGTTGCGCGTGCTGTA 62.980 55.000 23.16 4.66 43.34 2.74
2772 2833 0.307760 CTTGTCGGTGTTCCAGTTGC 59.692 55.000 0.00 0.00 0.00 4.17
2947 3008 0.602060 GATTCCGACCGAGGGTATCC 59.398 60.000 0.00 0.00 35.25 2.59
2954 3015 1.759994 CAATCGAGATTCCGACCGAG 58.240 55.000 0.00 0.00 41.70 4.63
2959 3020 0.030773 CCGAGCAATCGAGATTCCGA 59.969 55.000 0.00 0.00 43.16 4.55
2992 3053 2.502492 GCGGCCATAGAGCTCCTCA 61.502 63.158 10.93 0.00 32.06 3.86
3070 3131 1.006102 CTTCACTTCACCGTCGGCT 60.006 57.895 12.28 0.00 0.00 5.52
3118 3179 0.981183 TAACACGCAGAGGGATTGGT 59.019 50.000 0.00 0.00 0.00 3.67
3120 3181 3.074412 AGTTTAACACGCAGAGGGATTG 58.926 45.455 0.00 0.00 0.00 2.67
3130 3191 4.151689 TCATCACTAGCAAGTTTAACACGC 59.848 41.667 0.00 0.00 31.97 5.34
3157 3226 8.454106 GGTCCATCCGAATTCTGATAATTTATG 58.546 37.037 11.49 0.75 0.00 1.90
3175 3244 3.007635 CAAGTTAAAGACCGGTCCATCC 58.992 50.000 30.82 14.98 0.00 3.51
3197 3268 3.889196 TTAAACCATTGTGCGTCAGTC 57.111 42.857 0.00 0.00 0.00 3.51
3208 3279 4.424842 TGGGCAGAGGAAATTAAACCATT 58.575 39.130 0.00 0.00 0.00 3.16
3210 3281 3.534357 TGGGCAGAGGAAATTAAACCA 57.466 42.857 0.00 0.00 0.00 3.67
3212 3283 6.036577 TGAAATGGGCAGAGGAAATTAAAC 57.963 37.500 0.00 0.00 0.00 2.01
3228 3300 5.551760 ACTTGATAAACTCGCTGAAATGG 57.448 39.130 0.00 0.00 0.00 3.16
3229 3301 5.251081 CGACTTGATAAACTCGCTGAAATG 58.749 41.667 0.00 0.00 0.00 2.32
3398 3479 9.282247 CCGAAATCAATTGAAAGAACAAGATAG 57.718 33.333 13.09 0.00 33.22 2.08
3448 3539 1.072965 GAGCATAGGTTCCCCTGATGG 59.927 57.143 0.00 0.00 42.67 3.51
3484 3575 1.074423 ACGAGGAGAACTGGACGGA 59.926 57.895 0.00 0.00 0.00 4.69
3486 3577 1.162698 TACACGAGGAGAACTGGACG 58.837 55.000 0.00 0.00 0.00 4.79
3525 3616 6.885918 TCCACATGCATCTAATTTCAAGAAGA 59.114 34.615 0.00 0.00 0.00 2.87
3591 3682 4.867599 GACCCCGGACGATCGCAC 62.868 72.222 16.60 9.72 0.00 5.34
3666 3757 3.121030 CGAGCTTGTCCCTTGGCG 61.121 66.667 0.00 0.00 0.00 5.69
3712 3803 1.072159 ACTGACACTGAGGCCTTGC 59.928 57.895 6.77 0.00 0.00 4.01
3866 3957 0.039618 ACCAAACAGCCCCTACCATG 59.960 55.000 0.00 0.00 0.00 3.66
3869 3960 0.966179 CAAACCAAACAGCCCCTACC 59.034 55.000 0.00 0.00 0.00 3.18
3873 3964 0.104120 GTCACAAACCAAACAGCCCC 59.896 55.000 0.00 0.00 0.00 5.80
3874 3965 1.111277 AGTCACAAACCAAACAGCCC 58.889 50.000 0.00 0.00 0.00 5.19
3875 3966 4.584327 ATTAGTCACAAACCAAACAGCC 57.416 40.909 0.00 0.00 0.00 4.85
3876 3967 6.704819 CAAAATTAGTCACAAACCAAACAGC 58.295 36.000 0.00 0.00 0.00 4.40
3877 3968 6.238076 GGCAAAATTAGTCACAAACCAAACAG 60.238 38.462 0.00 0.00 0.00 3.16
3878 3969 5.582665 GGCAAAATTAGTCACAAACCAAACA 59.417 36.000 0.00 0.00 0.00 2.83
3879 3970 5.582665 TGGCAAAATTAGTCACAAACCAAAC 59.417 36.000 0.00 0.00 0.00 2.93
3880 3971 5.734720 TGGCAAAATTAGTCACAAACCAAA 58.265 33.333 0.00 0.00 0.00 3.28
3881 3972 5.344743 TGGCAAAATTAGTCACAAACCAA 57.655 34.783 0.00 0.00 0.00 3.67
3882 3973 5.344743 TTGGCAAAATTAGTCACAAACCA 57.655 34.783 0.00 0.00 0.00 3.67
3883 3974 6.670077 TTTTGGCAAAATTAGTCACAAACC 57.330 33.333 20.81 0.00 0.00 3.27
3884 3975 9.008289 CAATTTTTGGCAAAATTAGTCACAAAC 57.992 29.630 24.61 0.00 46.51 2.93
3885 3976 7.699812 GCAATTTTTGGCAAAATTAGTCACAAA 59.300 29.630 24.61 7.46 46.51 2.83
3886 3977 7.192232 GCAATTTTTGGCAAAATTAGTCACAA 58.808 30.769 24.61 8.17 46.51 3.33
3887 3978 6.723282 GCAATTTTTGGCAAAATTAGTCACA 58.277 32.000 24.61 8.86 46.51 3.58
3900 3991 8.983709 CTAACGTTAGATGTGGCAATTTTTGGC 61.984 40.741 27.65 6.83 43.34 4.52
3901 3992 4.555262 ACGTTAGATGTGGCAATTTTTGG 58.445 39.130 0.00 0.00 0.00 3.28
3902 3993 6.307800 CCTAACGTTAGATGTGGCAATTTTTG 59.692 38.462 31.97 9.28 32.47 2.44
3903 3994 6.386654 CCTAACGTTAGATGTGGCAATTTTT 58.613 36.000 31.97 0.00 32.47 1.94
3904 3995 5.621329 GCCTAACGTTAGATGTGGCAATTTT 60.621 40.000 31.97 0.00 38.79 1.82
3905 3996 4.142469 GCCTAACGTTAGATGTGGCAATTT 60.142 41.667 31.97 0.00 38.79 1.82
3906 3997 3.377172 GCCTAACGTTAGATGTGGCAATT 59.623 43.478 31.97 0.00 38.79 2.32
3907 3998 2.943033 GCCTAACGTTAGATGTGGCAAT 59.057 45.455 31.97 0.00 38.79 3.56
3908 3999 2.289756 TGCCTAACGTTAGATGTGGCAA 60.290 45.455 31.97 16.56 44.67 4.52
3909 4000 1.276705 TGCCTAACGTTAGATGTGGCA 59.723 47.619 31.97 28.60 45.31 4.92
3910 4001 2.018542 TGCCTAACGTTAGATGTGGC 57.981 50.000 31.97 26.66 39.33 5.01
3911 4002 3.596214 ACTTGCCTAACGTTAGATGTGG 58.404 45.455 31.97 19.08 32.47 4.17
3912 4003 5.178623 TCAAACTTGCCTAACGTTAGATGTG 59.821 40.000 31.97 21.12 32.47 3.21
3913 4004 5.178809 GTCAAACTTGCCTAACGTTAGATGT 59.821 40.000 31.97 21.08 32.47 3.06
3914 4005 5.390567 GGTCAAACTTGCCTAACGTTAGATG 60.391 44.000 31.97 19.21 32.47 2.90
3915 4006 4.694037 GGTCAAACTTGCCTAACGTTAGAT 59.306 41.667 31.97 12.16 32.47 1.98
3916 4007 4.060205 GGTCAAACTTGCCTAACGTTAGA 58.940 43.478 31.97 13.96 32.47 2.10
3917 4008 3.810941 TGGTCAAACTTGCCTAACGTTAG 59.189 43.478 25.33 25.33 0.00 2.34
3918 4009 3.806380 TGGTCAAACTTGCCTAACGTTA 58.194 40.909 7.94 7.94 0.00 3.18
3919 4010 2.645802 TGGTCAAACTTGCCTAACGTT 58.354 42.857 5.88 5.88 0.00 3.99
3920 4011 2.335316 TGGTCAAACTTGCCTAACGT 57.665 45.000 0.00 0.00 0.00 3.99
3921 4012 2.601266 CGTTGGTCAAACTTGCCTAACG 60.601 50.000 7.53 7.53 36.56 3.18
3922 4013 2.356695 ACGTTGGTCAAACTTGCCTAAC 59.643 45.455 0.00 0.00 36.56 2.34
3923 4014 2.645802 ACGTTGGTCAAACTTGCCTAA 58.354 42.857 0.00 0.00 36.56 2.69
3924 4015 2.335316 ACGTTGGTCAAACTTGCCTA 57.665 45.000 0.00 0.00 36.56 3.93
3925 4016 2.218603 CTACGTTGGTCAAACTTGCCT 58.781 47.619 0.00 0.00 36.56 4.75
3926 4017 1.265905 CCTACGTTGGTCAAACTTGCC 59.734 52.381 7.97 0.00 36.56 4.52
3927 4018 1.944709 ACCTACGTTGGTCAAACTTGC 59.055 47.619 16.30 0.00 34.86 4.01
3928 4019 3.199677 TCACCTACGTTGGTCAAACTTG 58.800 45.455 19.14 6.47 38.45 3.16
3929 4020 3.118519 ACTCACCTACGTTGGTCAAACTT 60.119 43.478 19.14 0.00 38.45 2.66
3930 4021 2.433239 ACTCACCTACGTTGGTCAAACT 59.567 45.455 19.14 0.00 38.45 2.66
3931 4022 2.542595 CACTCACCTACGTTGGTCAAAC 59.457 50.000 19.14 0.00 38.45 2.93
3932 4023 2.168936 ACACTCACCTACGTTGGTCAAA 59.831 45.455 19.14 6.95 38.45 2.69
3933 4024 1.758280 ACACTCACCTACGTTGGTCAA 59.242 47.619 19.14 9.38 38.45 3.18
3934 4025 1.405872 ACACTCACCTACGTTGGTCA 58.594 50.000 19.14 5.51 38.45 4.02
3935 4026 2.521105 AACACTCACCTACGTTGGTC 57.479 50.000 19.14 0.00 38.45 4.02
3936 4027 2.557317 CAAACACTCACCTACGTTGGT 58.443 47.619 16.30 16.30 41.77 3.67
3937 4028 1.871039 CCAAACACTCACCTACGTTGG 59.129 52.381 14.80 14.80 0.00 3.77
3938 4029 2.557317 ACCAAACACTCACCTACGTTG 58.443 47.619 0.00 0.00 0.00 4.10
3939 4030 2.994186 ACCAAACACTCACCTACGTT 57.006 45.000 0.00 0.00 0.00 3.99
3940 4031 2.994186 AACCAAACACTCACCTACGT 57.006 45.000 0.00 0.00 0.00 3.57
3941 4032 4.319261 GCTTAAACCAAACACTCACCTACG 60.319 45.833 0.00 0.00 0.00 3.51
3942 4033 4.023450 GGCTTAAACCAAACACTCACCTAC 60.023 45.833 0.00 0.00 0.00 3.18
3943 4034 4.139038 GGCTTAAACCAAACACTCACCTA 58.861 43.478 0.00 0.00 0.00 3.08
3944 4035 2.956333 GGCTTAAACCAAACACTCACCT 59.044 45.455 0.00 0.00 0.00 4.00
3945 4036 2.691011 TGGCTTAAACCAAACACTCACC 59.309 45.455 0.00 0.00 36.55 4.02
3946 4037 3.129638 TGTGGCTTAAACCAAACACTCAC 59.870 43.478 0.00 0.00 42.70 3.51
3947 4038 3.357203 TGTGGCTTAAACCAAACACTCA 58.643 40.909 0.00 0.00 42.70 3.41
3948 4039 4.278419 AGATGTGGCTTAAACCAAACACTC 59.722 41.667 0.00 0.00 42.70 3.51
3949 4040 4.215109 AGATGTGGCTTAAACCAAACACT 58.785 39.130 0.00 0.00 42.70 3.55
3950 4041 4.584327 AGATGTGGCTTAAACCAAACAC 57.416 40.909 0.00 0.00 42.70 3.32
3951 4042 5.242838 CCTAAGATGTGGCTTAAACCAAACA 59.757 40.000 0.00 0.00 42.70 2.83
3952 4043 5.709966 CCTAAGATGTGGCTTAAACCAAAC 58.290 41.667 0.00 0.00 42.70 2.93
3953 4044 4.219725 GCCTAAGATGTGGCTTAAACCAAA 59.780 41.667 0.00 0.00 45.26 3.28
3954 4045 3.761752 GCCTAAGATGTGGCTTAAACCAA 59.238 43.478 0.00 0.00 45.26 3.67
3955 4046 3.352648 GCCTAAGATGTGGCTTAAACCA 58.647 45.455 0.00 0.00 45.26 3.67
3964 4055 1.098050 GTGGCTTGCCTAAGATGTGG 58.902 55.000 13.18 0.00 35.92 4.17
3965 4056 1.825090 TGTGGCTTGCCTAAGATGTG 58.175 50.000 13.18 0.00 35.92 3.21
3966 4057 2.814805 ATGTGGCTTGCCTAAGATGT 57.185 45.000 13.18 0.00 35.92 3.06
3967 4058 3.429822 CCAAATGTGGCTTGCCTAAGATG 60.430 47.826 13.18 6.74 38.35 2.90
3968 4059 2.762327 CCAAATGTGGCTTGCCTAAGAT 59.238 45.455 13.18 0.00 38.35 2.40
3969 4060 2.170166 CCAAATGTGGCTTGCCTAAGA 58.830 47.619 13.18 0.00 38.35 2.10
3970 4061 2.094545 GTCCAAATGTGGCTTGCCTAAG 60.095 50.000 13.18 0.00 45.54 2.18
3971 4062 1.892474 GTCCAAATGTGGCTTGCCTAA 59.108 47.619 13.18 1.42 45.54 2.69
3972 4063 1.544724 GTCCAAATGTGGCTTGCCTA 58.455 50.000 13.18 2.62 45.54 3.93
3973 4064 1.187567 GGTCCAAATGTGGCTTGCCT 61.188 55.000 13.18 0.00 45.54 4.75
3974 4065 1.293179 GGTCCAAATGTGGCTTGCC 59.707 57.895 4.43 4.43 45.54 4.52
3975 4066 1.293179 GGGTCCAAATGTGGCTTGC 59.707 57.895 0.00 0.00 45.54 4.01
3976 4067 0.831288 TGGGGTCCAAATGTGGCTTG 60.831 55.000 0.00 0.00 45.54 4.01
3977 4068 0.831711 GTGGGGTCCAAATGTGGCTT 60.832 55.000 0.00 0.00 45.54 4.35
3978 4069 1.228862 GTGGGGTCCAAATGTGGCT 60.229 57.895 0.00 0.00 45.54 4.75
3979 4070 0.904394 ATGTGGGGTCCAAATGTGGC 60.904 55.000 0.00 0.00 45.54 5.01
3980 4071 0.896923 CATGTGGGGTCCAAATGTGG 59.103 55.000 8.56 0.00 42.62 4.17
3981 4072 0.896923 CCATGTGGGGTCCAAATGTG 59.103 55.000 14.08 4.49 45.27 3.21
3982 4073 0.904394 GCCATGTGGGGTCCAAATGT 60.904 55.000 14.08 0.00 45.27 2.71
3983 4074 0.903924 TGCCATGTGGGGTCCAAATG 60.904 55.000 9.56 9.56 46.05 2.32
3984 4075 0.043032 ATGCCATGTGGGGTCCAAAT 59.957 50.000 0.54 0.00 34.18 2.32
3985 4076 0.707024 TATGCCATGTGGGGTCCAAA 59.293 50.000 0.54 0.00 34.18 3.28
3986 4077 0.033601 GTATGCCATGTGGGGTCCAA 60.034 55.000 0.54 0.00 34.18 3.53
3987 4078 1.210885 TGTATGCCATGTGGGGTCCA 61.211 55.000 0.54 0.00 37.04 4.02
3988 4079 0.751643 GTGTATGCCATGTGGGGTCC 60.752 60.000 0.54 0.00 37.04 4.46
3989 4080 0.255890 AGTGTATGCCATGTGGGGTC 59.744 55.000 0.54 0.00 37.04 4.46
3990 4081 0.704076 AAGTGTATGCCATGTGGGGT 59.296 50.000 0.54 0.00 37.04 4.95
3991 4082 1.750778 GAAAGTGTATGCCATGTGGGG 59.249 52.381 0.54 0.00 37.04 4.96
3992 4083 1.750778 GGAAAGTGTATGCCATGTGGG 59.249 52.381 0.54 0.00 40.85 4.61
3993 4084 2.726821 AGGAAAGTGTATGCCATGTGG 58.273 47.619 0.00 0.00 38.53 4.17
3994 4085 4.336433 CCTAAGGAAAGTGTATGCCATGTG 59.664 45.833 0.00 0.00 0.00 3.21
3995 4086 4.526970 CCTAAGGAAAGTGTATGCCATGT 58.473 43.478 0.00 0.00 0.00 3.21
3996 4087 3.316308 GCCTAAGGAAAGTGTATGCCATG 59.684 47.826 0.00 0.00 0.00 3.66
3997 4088 3.203040 AGCCTAAGGAAAGTGTATGCCAT 59.797 43.478 0.00 0.00 0.00 4.40
3998 4089 2.576191 AGCCTAAGGAAAGTGTATGCCA 59.424 45.455 0.00 0.00 0.00 4.92
3999 4090 3.283259 AGCCTAAGGAAAGTGTATGCC 57.717 47.619 0.00 0.00 0.00 4.40
4000 4091 3.181496 GCAAGCCTAAGGAAAGTGTATGC 60.181 47.826 0.00 0.00 0.00 3.14
4001 4092 3.378427 GGCAAGCCTAAGGAAAGTGTATG 59.622 47.826 3.29 0.00 0.00 2.39
4002 4093 3.010138 TGGCAAGCCTAAGGAAAGTGTAT 59.990 43.478 12.96 0.00 36.94 2.29
4003 4094 2.373836 TGGCAAGCCTAAGGAAAGTGTA 59.626 45.455 12.96 0.00 36.94 2.90
4004 4095 1.144913 TGGCAAGCCTAAGGAAAGTGT 59.855 47.619 12.96 0.00 36.94 3.55
4005 4096 1.909700 TGGCAAGCCTAAGGAAAGTG 58.090 50.000 12.96 0.00 36.94 3.16
4006 4097 2.675658 TTGGCAAGCCTAAGGAAAGT 57.324 45.000 12.96 0.00 36.94 2.66
4007 4098 4.248058 CAATTTGGCAAGCCTAAGGAAAG 58.752 43.478 12.96 0.00 34.62 2.62
4008 4099 3.645687 ACAATTTGGCAAGCCTAAGGAAA 59.354 39.130 12.96 4.42 34.62 3.13
4009 4100 3.006752 CACAATTTGGCAAGCCTAAGGAA 59.993 43.478 12.96 0.00 34.62 3.36
4010 4101 2.562298 CACAATTTGGCAAGCCTAAGGA 59.438 45.455 12.96 0.00 34.62 3.36
4011 4102 2.354003 CCACAATTTGGCAAGCCTAAGG 60.354 50.000 12.96 9.80 39.07 2.69
4012 4103 2.963432 CCACAATTTGGCAAGCCTAAG 58.037 47.619 12.96 3.12 39.07 2.18
4023 4114 8.537049 TTTATCAAAATGAGAGCCACAATTTG 57.463 30.769 0.00 0.00 38.61 2.32
4024 4115 9.729281 AATTTATCAAAATGAGAGCCACAATTT 57.271 25.926 0.00 0.00 35.46 1.82
4027 4118 9.638239 GTTAATTTATCAAAATGAGAGCCACAA 57.362 29.630 0.00 0.00 35.46 3.33
4028 4119 8.250332 GGTTAATTTATCAAAATGAGAGCCACA 58.750 33.333 0.00 0.00 35.46 4.17
4029 4120 8.470002 AGGTTAATTTATCAAAATGAGAGCCAC 58.530 33.333 0.00 0.00 35.46 5.01
4030 4121 8.593945 AGGTTAATTTATCAAAATGAGAGCCA 57.406 30.769 0.00 0.00 35.46 4.75
4043 4134 9.569167 GCCAAACTTGACTAAGGTTAATTTATC 57.431 33.333 0.00 0.00 41.80 1.75
4044 4135 9.084533 TGCCAAACTTGACTAAGGTTAATTTAT 57.915 29.630 0.00 0.00 41.80 1.40
4045 4136 8.466617 TGCCAAACTTGACTAAGGTTAATTTA 57.533 30.769 0.00 0.00 41.80 1.40
4046 4137 7.354751 TGCCAAACTTGACTAAGGTTAATTT 57.645 32.000 0.00 0.00 41.80 1.82
4047 4138 6.969993 TGCCAAACTTGACTAAGGTTAATT 57.030 33.333 0.00 0.00 41.80 1.40
4048 4139 6.969993 TTGCCAAACTTGACTAAGGTTAAT 57.030 33.333 0.00 0.00 41.80 1.40
4049 4140 6.777213 TTTGCCAAACTTGACTAAGGTTAA 57.223 33.333 0.00 0.00 41.80 2.01
4050 4141 6.777213 TTTTGCCAAACTTGACTAAGGTTA 57.223 33.333 0.00 0.00 41.80 2.85
4051 4142 5.669164 TTTTGCCAAACTTGACTAAGGTT 57.331 34.783 0.00 0.00 44.49 3.50
4052 4143 5.669164 TTTTTGCCAAACTTGACTAAGGT 57.331 34.783 0.00 0.00 38.26 3.50
4053 4144 6.018832 CACATTTTTGCCAAACTTGACTAAGG 60.019 38.462 5.74 0.00 38.26 2.69
4054 4145 6.534793 ACACATTTTTGCCAAACTTGACTAAG 59.465 34.615 5.74 0.00 39.86 2.18
4055 4146 6.312426 CACACATTTTTGCCAAACTTGACTAA 59.688 34.615 5.74 0.00 0.00 2.24
4056 4147 5.809562 CACACATTTTTGCCAAACTTGACTA 59.190 36.000 5.74 0.00 0.00 2.59
4057 4148 4.630940 CACACATTTTTGCCAAACTTGACT 59.369 37.500 5.74 0.00 0.00 3.41
4058 4149 4.201802 CCACACATTTTTGCCAAACTTGAC 60.202 41.667 5.74 0.00 0.00 3.18
4059 4150 3.937706 CCACACATTTTTGCCAAACTTGA 59.062 39.130 5.74 0.00 0.00 3.02
4060 4151 3.487209 GCCACACATTTTTGCCAAACTTG 60.487 43.478 0.00 0.00 0.00 3.16
4061 4152 2.682352 GCCACACATTTTTGCCAAACTT 59.318 40.909 0.00 0.00 0.00 2.66
4062 4153 2.287769 GCCACACATTTTTGCCAAACT 58.712 42.857 0.00 0.00 0.00 2.66
4063 4154 2.012673 TGCCACACATTTTTGCCAAAC 58.987 42.857 0.00 0.00 0.00 2.93
4064 4155 2.408271 TGCCACACATTTTTGCCAAA 57.592 40.000 0.00 0.00 0.00 3.28
4065 4156 2.408271 TTGCCACACATTTTTGCCAA 57.592 40.000 0.00 0.00 0.00 4.52
4066 4157 2.286872 CTTTGCCACACATTTTTGCCA 58.713 42.857 0.00 0.00 0.00 4.92
4067 4158 2.031930 CACTTTGCCACACATTTTTGCC 59.968 45.455 0.00 0.00 0.00 4.52
4068 4159 2.677337 ACACTTTGCCACACATTTTTGC 59.323 40.909 0.00 0.00 0.00 3.68
4069 4160 3.063725 CCACACTTTGCCACACATTTTTG 59.936 43.478 0.00 0.00 0.00 2.44
4070 4161 3.269178 CCACACTTTGCCACACATTTTT 58.731 40.909 0.00 0.00 0.00 1.94
4071 4162 2.903798 CCACACTTTGCCACACATTTT 58.096 42.857 0.00 0.00 0.00 1.82
4072 4163 1.473080 GCCACACTTTGCCACACATTT 60.473 47.619 0.00 0.00 0.00 2.32
4073 4164 0.104671 GCCACACTTTGCCACACATT 59.895 50.000 0.00 0.00 0.00 2.71
4074 4165 1.042003 TGCCACACTTTGCCACACAT 61.042 50.000 0.00 0.00 0.00 3.21
4075 4166 1.253593 TTGCCACACTTTGCCACACA 61.254 50.000 0.00 0.00 0.00 3.72
4076 4167 0.104671 ATTGCCACACTTTGCCACAC 59.895 50.000 0.00 0.00 0.00 3.82
4077 4168 0.104487 CATTGCCACACTTTGCCACA 59.896 50.000 0.00 0.00 0.00 4.17
4078 4169 1.223417 GCATTGCCACACTTTGCCAC 61.223 55.000 0.00 0.00 0.00 5.01
4079 4170 1.069427 GCATTGCCACACTTTGCCA 59.931 52.632 0.00 0.00 0.00 4.92
4080 4171 0.602562 TAGCATTGCCACACTTTGCC 59.397 50.000 4.70 0.00 33.85 4.52
4081 4172 1.270550 ACTAGCATTGCCACACTTTGC 59.729 47.619 4.70 0.00 0.00 3.68
4082 4173 2.095059 GGACTAGCATTGCCACACTTTG 60.095 50.000 4.70 0.00 0.00 2.77
4083 4174 2.162681 GGACTAGCATTGCCACACTTT 58.837 47.619 4.70 0.00 0.00 2.66
4084 4175 1.352352 AGGACTAGCATTGCCACACTT 59.648 47.619 4.70 0.00 0.00 3.16
4085 4176 0.987294 AGGACTAGCATTGCCACACT 59.013 50.000 4.70 0.00 0.00 3.55
4086 4177 2.691409 TAGGACTAGCATTGCCACAC 57.309 50.000 4.70 0.00 0.00 3.82
4087 4178 3.712016 TTTAGGACTAGCATTGCCACA 57.288 42.857 4.70 0.00 0.00 4.17
4088 4179 4.640201 TGATTTTAGGACTAGCATTGCCAC 59.360 41.667 4.70 0.00 0.00 5.01
4089 4180 4.854173 TGATTTTAGGACTAGCATTGCCA 58.146 39.130 4.70 0.00 0.00 4.92
4090 4181 5.835113 TTGATTTTAGGACTAGCATTGCC 57.165 39.130 4.70 0.00 0.00 4.52
4091 4182 6.620678 TGTTTGATTTTAGGACTAGCATTGC 58.379 36.000 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.