Multiple sequence alignment - TraesCS6A01G220600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G220600 chr6A 100.000 3784 0 0 1 3784 409795514 409799297 0.000000e+00 6988.0
1 TraesCS6A01G220600 chr6A 100.000 541 0 0 4056 4596 409799569 409800109 0.000000e+00 1000.0
2 TraesCS6A01G220600 chr6A 79.487 117 11 10 1 113 384170734 384170841 2.290000e-08 71.3
3 TraesCS6A01G220600 chr6A 100.000 29 0 0 1052 1080 553926014 553926042 2.000000e-03 54.7
4 TraesCS6A01G220600 chr6D 95.710 1352 49 7 688 2034 305076079 305074732 0.000000e+00 2167.0
5 TraesCS6A01G220600 chr6D 95.138 1378 51 7 2408 3783 305074142 305072779 0.000000e+00 2159.0
6 TraesCS6A01G220600 chr6D 89.224 696 37 16 1 690 305076901 305076238 0.000000e+00 835.0
7 TraesCS6A01G220600 chr6D 89.503 543 43 6 4061 4596 305072676 305072141 0.000000e+00 675.0
8 TraesCS6A01G220600 chr6D 92.958 71 3 1 2037 2105 305074197 305074127 8.140000e-18 102.0
9 TraesCS6A01G220600 chr6D 82.569 109 9 8 1 108 223016767 223016668 2.280000e-13 87.9
10 TraesCS6A01G220600 chr6D 100.000 29 0 0 1052 1080 408183286 408183314 2.000000e-03 54.7
11 TraesCS6A01G220600 chr6B 94.478 1340 63 4 2449 3784 472235183 472236515 0.000000e+00 2054.0
12 TraesCS6A01G220600 chr6B 93.625 1349 50 17 689 2034 472233677 472234992 0.000000e+00 1982.0
13 TraesCS6A01G220600 chr6B 89.337 694 40 15 1 690 472232931 472233594 0.000000e+00 841.0
14 TraesCS6A01G220600 chr6B 86.902 397 38 6 4209 4595 472236680 472237072 2.540000e-117 433.0
15 TraesCS6A01G220600 chr6B 87.255 306 35 4 2105 2408 675395931 675396234 3.400000e-91 346.0
16 TraesCS6A01G220600 chr6B 95.000 60 3 0 4056 4115 472236621 472236680 1.360000e-15 95.3
17 TraesCS6A01G220600 chr1B 82.231 484 63 14 156 624 240503125 240503600 3.330000e-106 396.0
18 TraesCS6A01G220600 chr5A 80.952 462 72 12 156 606 664817970 664818426 7.320000e-93 351.0
19 TraesCS6A01G220600 chr5A 78.814 118 19 4 1 113 287128789 287128905 1.770000e-09 75.0
20 TraesCS6A01G220600 chr5A 85.246 61 7 2 1044 1103 589366399 589366458 1.380000e-05 62.1
21 TraesCS6A01G220600 chr2B 87.500 304 37 1 2106 2409 105850051 105849749 2.630000e-92 350.0
22 TraesCS6A01G220600 chr2B 78.326 466 67 21 1031 1482 558044720 558044275 2.110000e-68 270.0
23 TraesCS6A01G220600 chr3B 87.500 304 35 3 2107 2409 690992184 690992485 9.460000e-92 348.0
24 TraesCS6A01G220600 chr3B 87.171 304 37 2 2107 2409 449806546 449806848 1.220000e-90 344.0
25 TraesCS6A01G220600 chr2A 87.213 305 37 2 2106 2409 51641556 51641253 3.400000e-91 346.0
26 TraesCS6A01G220600 chr2A 86.885 305 38 2 2106 2409 434580264 434579961 1.580000e-89 340.0
27 TraesCS6A01G220600 chr2A 76.033 484 67 23 1028 1482 618989218 618989681 6.030000e-49 206.0
28 TraesCS6A01G220600 chr2A 79.832 119 17 5 1 113 557919426 557919309 3.810000e-11 80.5
29 TraesCS6A01G220600 chr2A 92.308 52 1 1 3604 3655 393116567 393116615 2.290000e-08 71.3
30 TraesCS6A01G220600 chr2A 89.474 57 3 3 3604 3660 335839430 335839483 8.250000e-08 69.4
31 TraesCS6A01G220600 chr7B 86.928 306 38 2 2106 2410 218525646 218525950 4.400000e-90 342.0
32 TraesCS6A01G220600 chr4D 86.495 311 39 3 2104 2413 208562624 208562316 5.700000e-89 339.0
33 TraesCS6A01G220600 chr4D 80.083 482 66 20 156 625 484411883 484412346 9.530000e-87 331.0
34 TraesCS6A01G220600 chr4D 75.476 473 90 18 164 623 4126785 4126326 1.680000e-49 207.0
35 TraesCS6A01G220600 chr4A 86.262 313 39 4 2106 2416 664934320 664934010 2.050000e-88 337.0
36 TraesCS6A01G220600 chr4A 92.000 50 4 0 1 50 581974928 581974879 2.290000e-08 71.3
37 TraesCS6A01G220600 chr4A 90.566 53 2 3 3604 3656 309515932 309515981 2.970000e-07 67.6
38 TraesCS6A01G220600 chr4A 94.872 39 2 0 1051 1089 710695484 710695446 1.380000e-05 62.1
39 TraesCS6A01G220600 chr2D 78.229 542 103 9 2964 3493 476765270 476765808 2.650000e-87 333.0
40 TraesCS6A01G220600 chr2D 77.707 471 74 17 1031 1490 476762478 476762928 4.560000e-65 259.0
41 TraesCS6A01G220600 chr2D 92.308 52 1 3 3604 3655 335776145 335776193 2.290000e-08 71.3
42 TraesCS6A01G220600 chr2D 79.798 99 14 5 15 108 64476338 64476241 2.970000e-07 67.6
43 TraesCS6A01G220600 chr5B 82.979 329 42 6 222 539 356715639 356715964 7.530000e-73 285.0
44 TraesCS6A01G220600 chr5B 85.246 61 7 2 1044 1103 576242905 576242964 1.380000e-05 62.1
45 TraesCS6A01G220600 chr5B 83.607 61 8 2 1044 1103 576256588 576256647 6.420000e-04 56.5
46 TraesCS6A01G220600 chr7A 78.591 369 57 20 275 633 69317435 69317079 1.660000e-54 224.0
47 TraesCS6A01G220600 chr7A 79.646 113 13 8 1 112 261074619 261074722 6.380000e-09 73.1
48 TraesCS6A01G220600 chr7A 79.646 113 13 8 1 112 261099992 261100095 6.380000e-09 73.1
49 TraesCS6A01G220600 chr7A 93.478 46 3 0 1044 1089 26978354 26978309 8.250000e-08 69.4
50 TraesCS6A01G220600 chr7A 81.013 79 11 4 1051 1127 27032903 27032827 4.970000e-05 60.2
51 TraesCS6A01G220600 chr5D 75.717 453 78 22 166 606 552776440 552776872 1.010000e-46 198.0
52 TraesCS6A01G220600 chr5D 85.246 61 7 2 1044 1103 469269571 469269630 1.380000e-05 62.1
53 TraesCS6A01G220600 chr5D 83.607 61 8 2 1044 1103 469235423 469235482 6.420000e-04 56.5
54 TraesCS6A01G220600 chr5D 83.607 61 8 2 1044 1103 469241920 469241979 6.420000e-04 56.5
55 TraesCS6A01G220600 chr5D 83.607 61 8 2 1044 1103 469284732 469284791 6.420000e-04 56.5
56 TraesCS6A01G220600 chr4B 79.339 242 41 8 388 625 585029865 585030101 1.320000e-35 161.0
57 TraesCS6A01G220600 chr1D 76.207 290 46 16 248 529 482216456 482216730 1.040000e-26 132.0
58 TraesCS6A01G220600 chr3D 82.143 112 15 4 1 108 263724158 263724048 1.760000e-14 91.6
59 TraesCS6A01G220600 chr3D 80.000 110 18 4 1 108 259426399 259426292 1.370000e-10 78.7
60 TraesCS6A01G220600 chr7D 82.569 109 10 5 1 108 112468593 112468493 2.280000e-13 87.9
61 TraesCS6A01G220600 chr7D 80.180 111 19 1 1 108 570970869 570970979 3.810000e-11 80.5
62 TraesCS6A01G220600 chr3A 80.508 118 17 4 1 113 590588304 590588188 8.190000e-13 86.1
63 TraesCS6A01G220600 chrUn 90.385 52 2 3 3604 3655 93408830 93408782 1.070000e-06 65.8
64 TraesCS6A01G220600 chrUn 90.385 52 2 3 3604 3655 346595692 346595644 1.070000e-06 65.8
65 TraesCS6A01G220600 chrUn 90.385 52 2 3 3604 3655 444245610 444245562 1.070000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G220600 chr6A 409795514 409800109 4595 False 3994.00 6988 100.0000 1 4596 2 chr6A.!!$F3 4595
1 TraesCS6A01G220600 chr6D 305072141 305076901 4760 True 1187.60 2167 92.5066 1 4596 5 chr6D.!!$R2 4595
2 TraesCS6A01G220600 chr6B 472232931 472237072 4141 False 1081.06 2054 91.8684 1 4595 5 chr6B.!!$F2 4594
3 TraesCS6A01G220600 chr2D 476762478 476765808 3330 False 296.00 333 77.9680 1031 3493 2 chr2D.!!$F2 2462

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 44 1.069973 ACACAATCAATCACACACGCG 60.070 47.619 3.53 3.53 0.0 6.01 F
1647 2014 0.837272 ATCCTACACATGGGTTCCGG 59.163 55.000 5.59 5.09 0.0 5.14 F
2331 3448 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.0 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1891 2463 0.165079 CATAAACAAAGACGCGCGGT 59.835 50.0 35.22 19.03 0.00 5.68 R
2883 4964 1.196012 GACCTGGAGAATTCGGAGGT 58.804 55.0 19.94 19.94 38.76 3.85 R
4178 6310 0.249398 GTGTGATAAGGTGGTCGCCT 59.751 55.0 0.00 0.00 41.41 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 41 6.696583 TCAATTTCACACAATCAATCACACAC 59.303 34.615 0.00 0.00 0.00 3.82
42 44 1.069973 ACACAATCAATCACACACGCG 60.070 47.619 3.53 3.53 0.00 6.01
48 50 3.157932 TCAATCACACACGCGATCATA 57.842 42.857 15.93 0.00 0.00 2.15
49 51 3.516615 TCAATCACACACGCGATCATAA 58.483 40.909 15.93 0.00 0.00 1.90
50 52 3.551485 TCAATCACACACGCGATCATAAG 59.449 43.478 15.93 0.00 0.00 1.73
51 53 2.647529 TCACACACGCGATCATAAGT 57.352 45.000 15.93 0.00 0.00 2.24
52 54 2.954316 TCACACACGCGATCATAAGTT 58.046 42.857 15.93 0.00 0.00 2.66
53 55 2.921121 TCACACACGCGATCATAAGTTC 59.079 45.455 15.93 0.00 0.00 3.01
54 56 2.666022 CACACACGCGATCATAAGTTCA 59.334 45.455 15.93 0.00 0.00 3.18
55 57 3.306973 CACACACGCGATCATAAGTTCAT 59.693 43.478 15.93 0.00 0.00 2.57
58 60 5.005394 ACACACGCGATCATAAGTTCATAAC 59.995 40.000 15.93 0.00 0.00 1.89
63 65 5.332581 CGCGATCATAAGTTCATAACCACTG 60.333 44.000 0.00 0.00 0.00 3.66
127 129 6.869421 ACAATTATTTTCGCAGTTGTATGC 57.131 33.333 0.00 0.00 42.95 3.14
132 134 3.980646 TTTCGCAGTTGTATGCAAGTT 57.019 38.095 0.54 0.00 46.87 2.66
133 135 3.980646 TTCGCAGTTGTATGCAAGTTT 57.019 38.095 0.54 0.00 46.87 2.66
134 136 3.980646 TCGCAGTTGTATGCAAGTTTT 57.019 38.095 0.54 0.00 46.87 2.43
135 137 4.300189 TCGCAGTTGTATGCAAGTTTTT 57.700 36.364 0.54 0.00 46.87 1.94
159 161 5.219226 TTCGAGAGTACGAAAGTCATCTC 57.781 43.478 0.00 0.00 46.66 2.75
160 162 4.505808 TCGAGAGTACGAAAGTCATCTCT 58.494 43.478 0.00 0.00 45.94 3.10
161 163 5.658468 TCGAGAGTACGAAAGTCATCTCTA 58.342 41.667 0.00 0.00 45.94 2.43
162 164 6.282167 TCGAGAGTACGAAAGTCATCTCTAT 58.718 40.000 0.00 0.00 45.94 1.98
207 209 3.208592 TCCACCTCCTCCCCCAGT 61.209 66.667 0.00 0.00 0.00 4.00
271 275 9.630098 TTTTTCTGATAATTTCAACAGATGCTC 57.370 29.630 0.00 0.00 38.79 4.26
287 291 8.133024 ACAGATGCTCCATAAAATAAAACCAA 57.867 30.769 0.00 0.00 0.00 3.67
288 292 8.761689 ACAGATGCTCCATAAAATAAAACCAAT 58.238 29.630 0.00 0.00 0.00 3.16
415 421 7.920682 TCTCAACTCAATTAAAACTTTCCTTGC 59.079 33.333 0.00 0.00 0.00 4.01
606 612 7.338800 AGAATATTTATGTCCCTGTTGCAAG 57.661 36.000 0.00 0.00 0.00 4.01
607 613 7.118723 AGAATATTTATGTCCCTGTTGCAAGA 58.881 34.615 0.00 0.00 0.00 3.02
837 1007 9.394477 GCGAAGAGATAACAACAACTTTAATTT 57.606 29.630 0.00 0.00 0.00 1.82
1512 1702 2.034305 GCACCGATCTAACTATCCACGT 59.966 50.000 0.00 0.00 0.00 4.49
1517 1707 4.066490 CGATCTAACTATCCACGTCTCCT 58.934 47.826 0.00 0.00 0.00 3.69
1518 1708 4.152759 CGATCTAACTATCCACGTCTCCTC 59.847 50.000 0.00 0.00 0.00 3.71
1591 1859 1.658596 TGATTAGCTTACGTTGCGCAG 59.341 47.619 11.31 1.78 35.28 5.18
1613 1881 3.742369 GTGGCAATCACAAAATCACAAGG 59.258 43.478 0.00 0.00 45.39 3.61
1615 1883 4.141756 TGGCAATCACAAAATCACAAGGTT 60.142 37.500 0.00 0.00 0.00 3.50
1617 1885 5.291971 GCAATCACAAAATCACAAGGTTCT 58.708 37.500 0.00 0.00 0.00 3.01
1637 1905 5.403558 TCTAGGAGATCCAATCCTACACA 57.596 43.478 5.34 0.00 45.58 3.72
1647 2014 0.837272 ATCCTACACATGGGTTCCGG 59.163 55.000 5.59 5.09 0.00 5.14
1749 2116 5.647658 AGTTGCGTCAATTAATCTGGATTGA 59.352 36.000 6.13 0.00 39.30 2.57
1797 2316 6.140737 GCATTAGCGTTTAGTGCATTGTAATC 59.859 38.462 10.22 0.00 35.93 1.75
1804 2376 6.237996 CGTTTAGTGCATTGTAATCGTATGGT 60.238 38.462 0.00 0.00 0.00 3.55
2005 2577 2.353269 CTCGGCACATAAAACGGCATAA 59.647 45.455 0.00 0.00 0.00 1.90
2068 3183 1.448985 TTAGCACGTCTGATTTGGGC 58.551 50.000 0.00 0.00 0.00 5.36
2106 3223 8.726988 TCAAGTAATAACATTACAAAGTCTGGC 58.273 33.333 10.72 0.00 0.00 4.85
2107 3224 7.303634 AGTAATAACATTACAAAGTCTGGCG 57.696 36.000 10.72 0.00 0.00 5.69
2108 3225 7.101054 AGTAATAACATTACAAAGTCTGGCGA 58.899 34.615 10.72 0.00 0.00 5.54
2109 3226 6.811253 AATAACATTACAAAGTCTGGCGAA 57.189 33.333 0.00 0.00 0.00 4.70
2110 3227 4.483476 AACATTACAAAGTCTGGCGAAC 57.517 40.909 0.00 0.00 0.00 3.95
2111 3228 2.812011 ACATTACAAAGTCTGGCGAACC 59.188 45.455 0.00 0.00 0.00 3.62
2112 3229 2.623878 TTACAAAGTCTGGCGAACCA 57.376 45.000 0.00 0.00 46.51 3.67
2129 3246 3.257133 AACCCGTGGTTGGATGGT 58.743 55.556 7.42 0.00 45.07 3.55
2130 3247 1.539665 AACCCGTGGTTGGATGGTT 59.460 52.632 7.42 0.00 45.07 3.67
2131 3248 0.772384 AACCCGTGGTTGGATGGTTA 59.228 50.000 7.42 0.00 45.07 2.85
2132 3249 0.326927 ACCCGTGGTTGGATGGTTAG 59.673 55.000 0.00 0.00 27.29 2.34
2133 3250 0.616371 CCCGTGGTTGGATGGTTAGA 59.384 55.000 0.00 0.00 0.00 2.10
2134 3251 1.406887 CCCGTGGTTGGATGGTTAGAG 60.407 57.143 0.00 0.00 0.00 2.43
2135 3252 1.553248 CCGTGGTTGGATGGTTAGAGA 59.447 52.381 0.00 0.00 0.00 3.10
2136 3253 2.027561 CCGTGGTTGGATGGTTAGAGAA 60.028 50.000 0.00 0.00 0.00 2.87
2137 3254 3.558321 CCGTGGTTGGATGGTTAGAGAAA 60.558 47.826 0.00 0.00 0.00 2.52
2138 3255 3.435671 CGTGGTTGGATGGTTAGAGAAAC 59.564 47.826 0.00 0.00 37.36 2.78
2139 3256 4.652822 GTGGTTGGATGGTTAGAGAAACT 58.347 43.478 0.00 0.00 38.23 2.66
2140 3257 4.455877 GTGGTTGGATGGTTAGAGAAACTG 59.544 45.833 0.00 0.00 38.23 3.16
2141 3258 4.104102 TGGTTGGATGGTTAGAGAAACTGT 59.896 41.667 0.00 0.00 38.23 3.55
2142 3259 4.455877 GGTTGGATGGTTAGAGAAACTGTG 59.544 45.833 0.00 0.00 38.23 3.66
2143 3260 4.286297 TGGATGGTTAGAGAAACTGTGG 57.714 45.455 0.00 0.00 38.23 4.17
2144 3261 3.650942 TGGATGGTTAGAGAAACTGTGGT 59.349 43.478 0.00 0.00 38.23 4.16
2145 3262 4.841813 TGGATGGTTAGAGAAACTGTGGTA 59.158 41.667 0.00 0.00 38.23 3.25
2146 3263 5.487488 TGGATGGTTAGAGAAACTGTGGTAT 59.513 40.000 0.00 0.00 38.23 2.73
2147 3264 6.049790 GGATGGTTAGAGAAACTGTGGTATC 58.950 44.000 0.00 0.00 38.23 2.24
2148 3265 5.416271 TGGTTAGAGAAACTGTGGTATCC 57.584 43.478 0.00 0.00 38.23 2.59
2149 3266 5.091552 TGGTTAGAGAAACTGTGGTATCCT 58.908 41.667 0.00 0.00 38.23 3.24
2150 3267 5.187186 TGGTTAGAGAAACTGTGGTATCCTC 59.813 44.000 0.00 0.00 38.23 3.71
2151 3268 5.187186 GGTTAGAGAAACTGTGGTATCCTCA 59.813 44.000 0.00 0.00 38.23 3.86
2152 3269 6.334202 GTTAGAGAAACTGTGGTATCCTCAG 58.666 44.000 13.90 13.90 46.71 3.35
2153 3270 3.196685 AGAGAAACTGTGGTATCCTCAGC 59.803 47.826 14.99 3.05 45.66 4.26
2154 3271 2.237392 AGAAACTGTGGTATCCTCAGCC 59.763 50.000 14.99 7.28 45.66 4.85
2155 3272 1.958288 AACTGTGGTATCCTCAGCCT 58.042 50.000 14.99 3.51 45.66 4.58
2156 3273 2.848678 ACTGTGGTATCCTCAGCCTA 57.151 50.000 14.99 0.00 45.66 3.93
2157 3274 3.336509 ACTGTGGTATCCTCAGCCTAT 57.663 47.619 14.99 0.00 45.66 2.57
2158 3275 3.235200 ACTGTGGTATCCTCAGCCTATC 58.765 50.000 14.99 0.00 45.66 2.08
2159 3276 3.234353 CTGTGGTATCCTCAGCCTATCA 58.766 50.000 5.19 0.00 38.11 2.15
2160 3277 3.234353 TGTGGTATCCTCAGCCTATCAG 58.766 50.000 0.00 0.00 0.00 2.90
2161 3278 3.117131 TGTGGTATCCTCAGCCTATCAGA 60.117 47.826 0.00 0.00 0.00 3.27
2162 3279 3.509575 GTGGTATCCTCAGCCTATCAGAG 59.490 52.174 0.00 0.00 0.00 3.35
2163 3280 3.141083 TGGTATCCTCAGCCTATCAGAGT 59.859 47.826 0.00 0.00 0.00 3.24
2164 3281 4.156477 GGTATCCTCAGCCTATCAGAGTT 58.844 47.826 0.00 0.00 0.00 3.01
2165 3282 4.591072 GGTATCCTCAGCCTATCAGAGTTT 59.409 45.833 0.00 0.00 0.00 2.66
2166 3283 5.775701 GGTATCCTCAGCCTATCAGAGTTTA 59.224 44.000 0.00 0.00 0.00 2.01
2167 3284 6.267928 GGTATCCTCAGCCTATCAGAGTTTAA 59.732 42.308 0.00 0.00 0.00 1.52
2168 3285 5.860941 TCCTCAGCCTATCAGAGTTTAAG 57.139 43.478 0.00 0.00 0.00 1.85
2169 3286 5.519808 TCCTCAGCCTATCAGAGTTTAAGA 58.480 41.667 0.00 0.00 0.00 2.10
2170 3287 5.958380 TCCTCAGCCTATCAGAGTTTAAGAA 59.042 40.000 0.00 0.00 0.00 2.52
2171 3288 6.440647 TCCTCAGCCTATCAGAGTTTAAGAAA 59.559 38.462 0.00 0.00 0.00 2.52
2172 3289 7.126421 TCCTCAGCCTATCAGAGTTTAAGAAAT 59.874 37.037 0.00 0.00 0.00 2.17
2173 3290 7.772757 CCTCAGCCTATCAGAGTTTAAGAAATT 59.227 37.037 0.00 0.00 0.00 1.82
2174 3291 9.823647 CTCAGCCTATCAGAGTTTAAGAAATTA 57.176 33.333 0.00 0.00 0.00 1.40
2178 3295 9.670719 GCCTATCAGAGTTTAAGAAATTAATGC 57.329 33.333 0.00 0.00 0.00 3.56
2183 3300 9.283768 TCAGAGTTTAAGAAATTAATGCTCACA 57.716 29.630 0.00 0.00 0.00 3.58
2221 3338 5.924475 ATTTTAGTATTTCCAGCGATCCG 57.076 39.130 0.00 0.00 0.00 4.18
2237 3354 3.386543 CCGCATTTAGTGGGAGGAG 57.613 57.895 0.00 0.00 44.45 3.69
2238 3355 0.830648 CCGCATTTAGTGGGAGGAGA 59.169 55.000 0.00 0.00 44.45 3.71
2239 3356 1.473434 CCGCATTTAGTGGGAGGAGAC 60.473 57.143 0.00 0.00 44.45 3.36
2240 3357 1.802880 CGCATTTAGTGGGAGGAGACG 60.803 57.143 0.00 0.00 43.02 4.18
2241 3358 1.207329 GCATTTAGTGGGAGGAGACGT 59.793 52.381 0.00 0.00 0.00 4.34
2242 3359 2.354805 GCATTTAGTGGGAGGAGACGTT 60.355 50.000 0.00 0.00 0.00 3.99
2243 3360 3.868754 GCATTTAGTGGGAGGAGACGTTT 60.869 47.826 0.00 0.00 0.00 3.60
2244 3361 4.324267 CATTTAGTGGGAGGAGACGTTTT 58.676 43.478 0.00 0.00 0.00 2.43
2245 3362 3.672767 TTAGTGGGAGGAGACGTTTTC 57.327 47.619 0.00 0.00 0.00 2.29
2265 3382 3.050703 TCGACGACGAGGTACCTAC 57.949 57.895 16.29 8.70 43.81 3.18
2266 3383 0.802222 TCGACGACGAGGTACCTACG 60.802 60.000 24.27 24.27 43.81 3.51
2267 3384 1.756375 CGACGACGAGGTACCTACGG 61.756 65.000 27.19 18.12 42.66 4.02
2268 3385 0.741221 GACGACGAGGTACCTACGGT 60.741 60.000 27.19 20.50 40.16 4.83
2269 3386 1.021390 ACGACGAGGTACCTACGGTG 61.021 60.000 27.19 22.13 36.19 4.94
2270 3387 0.740868 CGACGAGGTACCTACGGTGA 60.741 60.000 26.64 0.00 36.19 4.02
2271 3388 0.729690 GACGAGGTACCTACGGTGAC 59.270 60.000 26.64 16.12 36.19 3.67
2272 3389 0.326264 ACGAGGTACCTACGGTGACT 59.674 55.000 26.64 11.19 36.19 3.41
2273 3390 1.271597 ACGAGGTACCTACGGTGACTT 60.272 52.381 26.64 10.67 36.19 3.01
2274 3391 1.815003 CGAGGTACCTACGGTGACTTT 59.185 52.381 16.29 0.00 36.19 2.66
2275 3392 2.415090 CGAGGTACCTACGGTGACTTTG 60.415 54.545 16.29 0.00 36.19 2.77
2276 3393 2.560105 GAGGTACCTACGGTGACTTTGT 59.440 50.000 16.29 0.00 36.19 2.83
2277 3394 3.758554 GAGGTACCTACGGTGACTTTGTA 59.241 47.826 16.29 0.00 36.19 2.41
2278 3395 4.151883 AGGTACCTACGGTGACTTTGTAA 58.848 43.478 14.41 0.00 36.19 2.41
2279 3396 4.588528 AGGTACCTACGGTGACTTTGTAAA 59.411 41.667 14.41 0.00 36.19 2.01
2280 3397 5.246883 AGGTACCTACGGTGACTTTGTAAAT 59.753 40.000 14.41 0.00 36.19 1.40
2281 3398 5.934043 GGTACCTACGGTGACTTTGTAAATT 59.066 40.000 4.06 0.00 36.19 1.82
2282 3399 6.427853 GGTACCTACGGTGACTTTGTAAATTT 59.572 38.462 4.06 0.00 36.19 1.82
2283 3400 6.549912 ACCTACGGTGACTTTGTAAATTTC 57.450 37.500 0.00 0.00 32.98 2.17
2284 3401 6.056884 ACCTACGGTGACTTTGTAAATTTCA 58.943 36.000 0.00 0.00 32.98 2.69
2285 3402 6.543100 ACCTACGGTGACTTTGTAAATTTCAA 59.457 34.615 0.00 0.00 32.98 2.69
2286 3403 7.075741 CCTACGGTGACTTTGTAAATTTCAAG 58.924 38.462 0.00 0.00 0.00 3.02
2287 3404 6.687081 ACGGTGACTTTGTAAATTTCAAGA 57.313 33.333 10.26 0.00 0.00 3.02
2288 3405 7.272037 ACGGTGACTTTGTAAATTTCAAGAT 57.728 32.000 10.26 2.01 0.00 2.40
2289 3406 7.138736 ACGGTGACTTTGTAAATTTCAAGATG 58.861 34.615 10.26 5.69 0.00 2.90
2290 3407 7.012894 ACGGTGACTTTGTAAATTTCAAGATGA 59.987 33.333 10.26 0.00 0.00 2.92
2291 3408 8.023128 CGGTGACTTTGTAAATTTCAAGATGAT 58.977 33.333 10.26 0.00 0.00 2.45
2296 3413 9.807649 ACTTTGTAAATTTCAAGATGATATGCC 57.192 29.630 10.26 0.00 0.00 4.40
2297 3414 9.806203 CTTTGTAAATTTCAAGATGATATGCCA 57.194 29.630 0.00 0.00 0.00 4.92
2298 3415 9.806203 TTTGTAAATTTCAAGATGATATGCCAG 57.194 29.630 0.00 0.00 0.00 4.85
2299 3416 7.428020 TGTAAATTTCAAGATGATATGCCAGC 58.572 34.615 0.00 0.00 0.00 4.85
2300 3417 6.726490 AAATTTCAAGATGATATGCCAGCT 57.274 33.333 0.00 0.00 33.74 4.24
2301 3418 5.961396 ATTTCAAGATGATATGCCAGCTC 57.039 39.130 0.00 0.00 30.67 4.09
2302 3419 4.426736 TTCAAGATGATATGCCAGCTCA 57.573 40.909 0.00 0.00 30.67 4.26
2303 3420 4.004196 TCAAGATGATATGCCAGCTCAG 57.996 45.455 0.00 0.00 30.67 3.35
2304 3421 3.390311 TCAAGATGATATGCCAGCTCAGT 59.610 43.478 0.00 0.00 30.67 3.41
2305 3422 3.681593 AGATGATATGCCAGCTCAGTC 57.318 47.619 0.00 0.00 0.00 3.51
2306 3423 3.241156 AGATGATATGCCAGCTCAGTCT 58.759 45.455 0.00 0.00 0.00 3.24
2307 3424 3.647113 AGATGATATGCCAGCTCAGTCTT 59.353 43.478 0.00 0.00 0.00 3.01
2308 3425 3.920231 TGATATGCCAGCTCAGTCTTT 57.080 42.857 0.00 0.00 0.00 2.52
2309 3426 4.226427 TGATATGCCAGCTCAGTCTTTT 57.774 40.909 0.00 0.00 0.00 2.27
2310 3427 3.943381 TGATATGCCAGCTCAGTCTTTTG 59.057 43.478 0.00 0.00 0.00 2.44
2311 3428 2.574006 ATGCCAGCTCAGTCTTTTGA 57.426 45.000 0.00 0.00 0.00 2.69
2312 3429 2.346766 TGCCAGCTCAGTCTTTTGAA 57.653 45.000 0.00 0.00 0.00 2.69
2313 3430 2.224606 TGCCAGCTCAGTCTTTTGAAG 58.775 47.619 0.00 0.00 0.00 3.02
2314 3431 1.538950 GCCAGCTCAGTCTTTTGAAGG 59.461 52.381 0.00 0.00 0.00 3.46
2315 3432 2.856222 CCAGCTCAGTCTTTTGAAGGT 58.144 47.619 0.00 0.00 0.00 3.50
2316 3433 2.551459 CCAGCTCAGTCTTTTGAAGGTG 59.449 50.000 0.00 0.00 0.00 4.00
2317 3434 2.031333 CAGCTCAGTCTTTTGAAGGTGC 60.031 50.000 0.00 0.00 0.00 5.01
2318 3435 2.158696 AGCTCAGTCTTTTGAAGGTGCT 60.159 45.455 0.00 0.00 32.49 4.40
2319 3436 2.225255 GCTCAGTCTTTTGAAGGTGCTC 59.775 50.000 0.00 0.00 0.00 4.26
2320 3437 3.470709 CTCAGTCTTTTGAAGGTGCTCA 58.529 45.455 0.00 0.00 0.00 4.26
2321 3438 4.070716 CTCAGTCTTTTGAAGGTGCTCAT 58.929 43.478 0.00 0.00 0.00 2.90
2322 3439 5.227569 TCAGTCTTTTGAAGGTGCTCATA 57.772 39.130 0.00 0.00 0.00 2.15
2323 3440 5.240891 TCAGTCTTTTGAAGGTGCTCATAG 58.759 41.667 0.00 0.00 0.00 2.23
2324 3441 4.394300 CAGTCTTTTGAAGGTGCTCATAGG 59.606 45.833 0.00 0.00 0.00 2.57
2325 3442 3.691609 GTCTTTTGAAGGTGCTCATAGGG 59.308 47.826 0.00 0.00 0.00 3.53
2326 3443 2.806945 TTTGAAGGTGCTCATAGGGG 57.193 50.000 0.00 0.00 0.00 4.79
2327 3444 1.668826 TTGAAGGTGCTCATAGGGGT 58.331 50.000 0.00 0.00 0.00 4.95
2328 3445 2.561209 TGAAGGTGCTCATAGGGGTA 57.439 50.000 0.00 0.00 0.00 3.69
2329 3446 2.398588 TGAAGGTGCTCATAGGGGTAG 58.601 52.381 0.00 0.00 0.00 3.18
2330 3447 1.694696 GAAGGTGCTCATAGGGGTAGG 59.305 57.143 0.00 0.00 0.00 3.18
2331 3448 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
2332 3449 0.400093 GGTGCTCATAGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
2333 3450 0.759346 GTGCTCATAGGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
2334 3451 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
2335 3452 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
2336 3453 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
2337 3454 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
2338 3455 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
2339 3456 1.335132 ATAGGGGTAGGGTGTGCGTG 61.335 60.000 0.00 0.00 0.00 5.34
2340 3457 2.735151 TAGGGGTAGGGTGTGCGTGT 62.735 60.000 0.00 0.00 0.00 4.49
2341 3458 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
2342 3459 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
2343 3460 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
2344 3461 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
2347 3464 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
2348 3465 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
2349 3466 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
2350 3467 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
2351 3468 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
2352 3469 0.450482 GTGCGTGTGTGCGTTCATAC 60.450 55.000 0.00 0.00 37.81 2.39
2372 3489 2.592194 CGGATAAGTATATGCGCGTGT 58.408 47.619 13.61 8.52 44.50 4.49
2373 3490 3.750512 CGGATAAGTATATGCGCGTGTA 58.249 45.455 13.61 7.27 44.50 2.90
2374 3491 4.348656 CGGATAAGTATATGCGCGTGTAT 58.651 43.478 13.61 9.22 44.50 2.29
2375 3492 5.504392 CGGATAAGTATATGCGCGTGTATA 58.496 41.667 13.61 9.23 44.50 1.47
2376 3493 6.140786 CGGATAAGTATATGCGCGTGTATAT 58.859 40.000 20.79 20.79 44.50 0.86
2377 3494 6.086371 CGGATAAGTATATGCGCGTGTATATG 59.914 42.308 24.28 6.20 44.50 1.78
2378 3495 7.136772 GGATAAGTATATGCGCGTGTATATGA 58.863 38.462 24.28 10.90 34.71 2.15
2379 3496 7.323895 GGATAAGTATATGCGCGTGTATATGAG 59.676 40.741 24.28 0.00 34.71 2.90
2380 3497 4.352039 AGTATATGCGCGTGTATATGAGC 58.648 43.478 24.28 15.73 38.85 4.26
2384 3501 2.868020 CGCGTGTATATGAGCGTGT 58.132 52.632 0.00 0.00 46.48 4.49
2385 3502 0.498511 CGCGTGTATATGAGCGTGTG 59.501 55.000 0.00 0.00 46.48 3.82
2386 3503 1.556564 GCGTGTATATGAGCGTGTGT 58.443 50.000 0.00 0.00 0.00 3.72
2387 3504 1.255342 GCGTGTATATGAGCGTGTGTG 59.745 52.381 0.00 0.00 0.00 3.82
2388 3505 2.526077 CGTGTATATGAGCGTGTGTGT 58.474 47.619 0.00 0.00 0.00 3.72
2389 3506 2.921121 CGTGTATATGAGCGTGTGTGTT 59.079 45.455 0.00 0.00 0.00 3.32
2390 3507 3.366724 CGTGTATATGAGCGTGTGTGTTT 59.633 43.478 0.00 0.00 0.00 2.83
2391 3508 4.637968 GTGTATATGAGCGTGTGTGTTTG 58.362 43.478 0.00 0.00 0.00 2.93
2392 3509 4.151689 GTGTATATGAGCGTGTGTGTTTGT 59.848 41.667 0.00 0.00 0.00 2.83
2393 3510 5.346551 GTGTATATGAGCGTGTGTGTTTGTA 59.653 40.000 0.00 0.00 0.00 2.41
2394 3511 4.921470 ATATGAGCGTGTGTGTTTGTAC 57.079 40.909 0.00 0.00 0.00 2.90
2395 3512 2.303163 TGAGCGTGTGTGTTTGTACT 57.697 45.000 0.00 0.00 0.00 2.73
2396 3513 1.930503 TGAGCGTGTGTGTTTGTACTG 59.069 47.619 0.00 0.00 0.00 2.74
2397 3514 1.931172 GAGCGTGTGTGTTTGTACTGT 59.069 47.619 0.00 0.00 0.00 3.55
2398 3515 1.663643 AGCGTGTGTGTTTGTACTGTG 59.336 47.619 0.00 0.00 0.00 3.66
2399 3516 1.395608 GCGTGTGTGTTTGTACTGTGT 59.604 47.619 0.00 0.00 0.00 3.72
2400 3517 2.159626 GCGTGTGTGTTTGTACTGTGTT 60.160 45.455 0.00 0.00 0.00 3.32
2401 3518 3.668491 GCGTGTGTGTTTGTACTGTGTTT 60.668 43.478 0.00 0.00 0.00 2.83
2402 3519 4.435784 GCGTGTGTGTTTGTACTGTGTTTA 60.436 41.667 0.00 0.00 0.00 2.01
2403 3520 5.619513 CGTGTGTGTTTGTACTGTGTTTAA 58.380 37.500 0.00 0.00 0.00 1.52
2404 3521 6.078479 CGTGTGTGTTTGTACTGTGTTTAAA 58.922 36.000 0.00 0.00 0.00 1.52
2405 3522 6.577800 CGTGTGTGTTTGTACTGTGTTTAAAA 59.422 34.615 0.00 0.00 0.00 1.52
2406 3523 7.113124 CGTGTGTGTTTGTACTGTGTTTAAAAA 59.887 33.333 0.00 0.00 0.00 1.94
2527 3698 1.330829 TCAGATAGCAGCACGTAGACG 59.669 52.381 0.00 0.00 46.33 4.18
2528 3699 0.663688 AGATAGCAGCACGTAGACGG 59.336 55.000 7.04 0.00 44.95 4.79
2529 3700 0.381089 GATAGCAGCACGTAGACGGT 59.619 55.000 7.04 0.00 44.95 4.83
2530 3701 1.600957 GATAGCAGCACGTAGACGGTA 59.399 52.381 7.04 0.00 44.95 4.02
2531 3702 1.012086 TAGCAGCACGTAGACGGTAG 58.988 55.000 7.04 0.00 44.95 3.18
2532 3703 0.675837 AGCAGCACGTAGACGGTAGA 60.676 55.000 7.04 0.00 44.95 2.59
2533 3704 0.522915 GCAGCACGTAGACGGTAGAC 60.523 60.000 7.04 0.00 44.95 2.59
2552 3723 6.631636 GGTAGACGTGAACAAGAAATTGTTTC 59.368 38.462 7.70 0.00 44.37 2.78
2575 3746 6.224584 TCCCCGGTTTTATTTCATTTGTTTC 58.775 36.000 0.00 0.00 0.00 2.78
2580 3751 8.487176 CCGGTTTTATTTCATTTGTTTCTTCTG 58.513 33.333 0.00 0.00 0.00 3.02
2687 4355 1.573829 GATCGCAAACAACCTCCGCA 61.574 55.000 0.00 0.00 0.00 5.69
2933 5014 2.805353 CCGACGGACTGCTTGACG 60.805 66.667 8.64 0.00 0.00 4.35
3352 5478 2.666508 CGGTGACCAGTTTATCAACTCG 59.333 50.000 1.11 0.00 41.69 4.18
3655 5784 2.028203 TGTCTCAGTGAATGCCGATTCA 60.028 45.455 0.00 0.00 44.73 2.57
3656 5785 2.606725 GTCTCAGTGAATGCCGATTCAG 59.393 50.000 0.00 0.00 46.95 3.02
3769 5901 7.887996 TCCATATTTTCAATCAGTTTGCAAC 57.112 32.000 0.00 0.00 35.16 4.17
3770 5902 7.440198 TCCATATTTTCAATCAGTTTGCAACA 58.560 30.769 0.00 0.00 35.16 3.33
4110 6242 2.192664 TCAAAAGAGTATGGCGGCAA 57.807 45.000 18.31 2.31 0.00 4.52
4131 6263 2.795175 AGACCGCGTACAAGGATATG 57.205 50.000 4.92 0.00 0.00 1.78
4146 6278 5.984695 AGGATATGTACATACGCATGTCT 57.015 39.130 17.69 0.00 44.42 3.41
4148 6280 5.243954 AGGATATGTACATACGCATGTCTGT 59.756 40.000 17.69 0.00 44.42 3.41
4160 6292 0.969149 ATGTCTGTGCGTGAGGAGAA 59.031 50.000 0.00 0.00 0.00 2.87
4168 6300 0.101579 GCGTGAGGAGAAGTAGAGCC 59.898 60.000 0.00 0.00 0.00 4.70
4169 6301 1.464734 CGTGAGGAGAAGTAGAGCCA 58.535 55.000 0.00 0.00 0.00 4.75
4170 6302 2.028130 CGTGAGGAGAAGTAGAGCCAT 58.972 52.381 0.00 0.00 0.00 4.40
4171 6303 2.034053 CGTGAGGAGAAGTAGAGCCATC 59.966 54.545 0.00 0.00 0.00 3.51
4172 6304 3.027412 GTGAGGAGAAGTAGAGCCATCA 58.973 50.000 0.00 0.00 0.00 3.07
4174 6306 3.703556 TGAGGAGAAGTAGAGCCATCAAG 59.296 47.826 0.00 0.00 0.00 3.02
4176 6308 4.357325 AGGAGAAGTAGAGCCATCAAGAA 58.643 43.478 0.00 0.00 0.00 2.52
4177 6309 4.780021 AGGAGAAGTAGAGCCATCAAGAAA 59.220 41.667 0.00 0.00 0.00 2.52
4178 6310 5.249393 AGGAGAAGTAGAGCCATCAAGAAAA 59.751 40.000 0.00 0.00 0.00 2.29
4179 6311 5.584251 GGAGAAGTAGAGCCATCAAGAAAAG 59.416 44.000 0.00 0.00 0.00 2.27
4180 6312 5.495640 AGAAGTAGAGCCATCAAGAAAAGG 58.504 41.667 0.00 0.00 0.00 3.11
4187 6319 1.200020 CCATCAAGAAAAGGCGACCAC 59.800 52.381 0.00 0.00 0.00 4.16
4199 6331 1.479323 GGCGACCACCTTATCACACTA 59.521 52.381 0.00 0.00 0.00 2.74
4206 6338 7.115947 GCGACCACCTTATCACACTATTTATAC 59.884 40.741 0.00 0.00 0.00 1.47
4254 6386 3.313803 TGAGCTCGACTGTAGCAATAGAG 59.686 47.826 9.64 0.00 42.62 2.43
4278 6410 4.020839 TGAAGATCATGTGCTCTCAAGACA 60.021 41.667 0.00 0.00 0.00 3.41
4367 6508 1.470996 GGTGGTGGAGCATGCCAAAA 61.471 55.000 15.66 0.00 40.20 2.44
4398 6540 6.409234 GGATGTTGGGGTGATGAGAGTAATAA 60.409 42.308 0.00 0.00 0.00 1.40
4404 6546 6.792473 TGGGGTGATGAGAGTAATAACCATAT 59.208 38.462 0.00 0.00 30.79 1.78
4416 6558 8.603242 AGTAATAACCATATGTTGTCCGATTC 57.397 34.615 1.24 0.00 37.83 2.52
4453 6595 2.183679 GGAGATGAAGAGGTGTGAGGT 58.816 52.381 0.00 0.00 0.00 3.85
4572 6714 1.873486 GCCATGCAAACAACTTGACCC 60.873 52.381 0.00 0.00 37.17 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 7.053316 TGATTGTGTGAAATTGAGTGGAATT 57.947 32.000 0.00 0.00 0.00 2.17
15 17 6.345172 CGTGTGTGATTGATTGTGTGAAATTG 60.345 38.462 0.00 0.00 0.00 2.32
39 41 4.745125 AGTGGTTATGAACTTATGATCGCG 59.255 41.667 0.00 0.00 0.00 5.87
48 50 9.787435 TTGTACTTATTCAGTGGTTATGAACTT 57.213 29.630 0.00 0.00 39.36 2.66
49 51 9.216117 GTTGTACTTATTCAGTGGTTATGAACT 57.784 33.333 0.00 0.00 39.36 3.01
50 52 8.995220 TGTTGTACTTATTCAGTGGTTATGAAC 58.005 33.333 0.00 0.00 39.36 3.18
51 53 9.733556 ATGTTGTACTTATTCAGTGGTTATGAA 57.266 29.630 0.00 0.00 40.72 2.57
52 54 9.733556 AATGTTGTACTTATTCAGTGGTTATGA 57.266 29.630 0.00 0.00 35.97 2.15
55 57 9.562408 TGAAATGTTGTACTTATTCAGTGGTTA 57.438 29.630 0.00 0.00 35.97 2.85
58 60 9.743057 TTTTGAAATGTTGTACTTATTCAGTGG 57.257 29.630 0.00 0.00 35.97 4.00
137 139 4.936411 AGAGATGACTTTCGTACTCTCGAA 59.064 41.667 0.00 0.00 45.87 3.71
139 141 4.868450 AGAGATGACTTTCGTACTCTCG 57.132 45.455 0.00 0.00 36.56 4.04
154 156 9.853177 ACCAACCTTCCTTTAATAATAGAGATG 57.147 33.333 0.00 0.00 0.00 2.90
157 159 9.274206 GCTACCAACCTTCCTTTAATAATAGAG 57.726 37.037 0.00 0.00 0.00 2.43
158 160 7.929785 CGCTACCAACCTTCCTTTAATAATAGA 59.070 37.037 0.00 0.00 0.00 1.98
159 161 7.713942 ACGCTACCAACCTTCCTTTAATAATAG 59.286 37.037 0.00 0.00 0.00 1.73
160 162 7.567458 ACGCTACCAACCTTCCTTTAATAATA 58.433 34.615 0.00 0.00 0.00 0.98
161 163 6.420638 ACGCTACCAACCTTCCTTTAATAAT 58.579 36.000 0.00 0.00 0.00 1.28
162 164 5.807909 ACGCTACCAACCTTCCTTTAATAA 58.192 37.500 0.00 0.00 0.00 1.40
320 324 8.879342 ATGTCGTTGTTTTGGAAATTATCAAA 57.121 26.923 3.02 3.02 0.00 2.69
338 344 9.559958 GATTTGATTGAGTTAATGAATGTCGTT 57.440 29.630 0.00 0.00 0.00 3.85
415 421 4.079443 TGATTTGGTTATGGGTAGGGAAGG 60.079 45.833 0.00 0.00 0.00 3.46
478 484 9.661954 TGAGTATGGGTAAGAGAAGATAAGAAT 57.338 33.333 0.00 0.00 0.00 2.40
530 536 8.725148 ACTTATACCTACACTAATCGTATTCCG 58.275 37.037 0.00 0.00 38.13 4.30
541 547 9.578576 AATTATGTCCGACTTATACCTACACTA 57.421 33.333 0.00 0.00 0.00 2.74
606 612 3.543680 TCCTAGCTATTTGCCAGTGTC 57.456 47.619 0.00 0.00 44.23 3.67
607 613 4.301072 TTTCCTAGCTATTTGCCAGTGT 57.699 40.909 0.00 0.00 44.23 3.55
837 1007 3.450817 TCCTCTCCATTTGACATTCGCTA 59.549 43.478 0.00 0.00 0.00 4.26
968 1143 2.160205 TCGATCGAGTTGTGGACTTCT 58.840 47.619 15.15 0.00 39.19 2.85
1395 1585 2.592287 GGCCAAAACCCGACGACA 60.592 61.111 0.00 0.00 0.00 4.35
1518 1708 6.126768 TGGTAGTTGAAATAAGATCCAGGAGG 60.127 42.308 0.00 0.00 0.00 4.30
1565 1833 3.970610 GCAACGTAAGCTAATCATGCATG 59.029 43.478 21.07 21.07 45.62 4.06
1591 1859 3.742369 CCTTGTGATTTTGTGATTGCCAC 59.258 43.478 0.00 0.00 45.88 5.01
1604 1872 5.032846 TGGATCTCCTAGAACCTTGTGATT 58.967 41.667 5.04 0.00 37.96 2.57
1607 1875 4.826274 TTGGATCTCCTAGAACCTTGTG 57.174 45.455 5.04 0.00 37.96 3.33
1608 1876 4.410555 GGATTGGATCTCCTAGAACCTTGT 59.589 45.833 5.04 0.00 37.96 3.16
1613 1881 5.598830 TGTGTAGGATTGGATCTCCTAGAAC 59.401 44.000 9.01 10.60 44.18 3.01
1615 1883 5.403558 TGTGTAGGATTGGATCTCCTAGA 57.596 43.478 9.01 5.99 44.18 2.43
1617 1885 4.840680 CCATGTGTAGGATTGGATCTCCTA 59.159 45.833 5.34 5.34 43.06 2.94
1637 1905 2.766736 TGTATAGTTCCCGGAACCCAT 58.233 47.619 24.13 19.40 42.85 4.00
1722 2089 7.807977 ATCCAGATTAATTGACGCAACTAAT 57.192 32.000 6.16 6.16 30.16 1.73
1749 2116 8.029782 TGCATATGTAATGTAAGTACTCCCTT 57.970 34.615 4.29 0.00 38.40 3.95
1797 2316 6.265577 TCGAGCATATCATCAATACCATACG 58.734 40.000 0.00 0.00 0.00 3.06
1804 2376 7.169158 TGGTACATCGAGCATATCATCAATA 57.831 36.000 0.00 0.00 0.00 1.90
1891 2463 0.165079 CATAAACAAAGACGCGCGGT 59.835 50.000 35.22 19.03 0.00 5.68
2005 2577 4.439563 CGTTGTCTTGGCAGGTTTTTAAGT 60.440 41.667 0.00 0.00 0.00 2.24
2113 3230 0.326927 CTAACCATCCAACCACGGGT 59.673 55.000 0.00 0.00 37.65 5.28
2114 3231 0.616371 TCTAACCATCCAACCACGGG 59.384 55.000 0.00 0.00 0.00 5.28
2115 3232 1.553248 TCTCTAACCATCCAACCACGG 59.447 52.381 0.00 0.00 0.00 4.94
2116 3233 3.328382 TTCTCTAACCATCCAACCACG 57.672 47.619 0.00 0.00 0.00 4.94
2117 3234 4.455877 CAGTTTCTCTAACCATCCAACCAC 59.544 45.833 0.00 0.00 37.46 4.16
2118 3235 4.104102 ACAGTTTCTCTAACCATCCAACCA 59.896 41.667 0.00 0.00 37.46 3.67
2119 3236 4.455877 CACAGTTTCTCTAACCATCCAACC 59.544 45.833 0.00 0.00 37.46 3.77
2120 3237 4.455877 CCACAGTTTCTCTAACCATCCAAC 59.544 45.833 0.00 0.00 37.46 3.77
2121 3238 4.104102 ACCACAGTTTCTCTAACCATCCAA 59.896 41.667 0.00 0.00 37.46 3.53
2122 3239 3.650942 ACCACAGTTTCTCTAACCATCCA 59.349 43.478 0.00 0.00 37.46 3.41
2123 3240 4.287766 ACCACAGTTTCTCTAACCATCC 57.712 45.455 0.00 0.00 37.46 3.51
2124 3241 6.049790 GGATACCACAGTTTCTCTAACCATC 58.950 44.000 0.00 0.00 37.46 3.51
2125 3242 5.726793 AGGATACCACAGTTTCTCTAACCAT 59.273 40.000 0.00 0.00 35.33 3.55
2126 3243 5.091552 AGGATACCACAGTTTCTCTAACCA 58.908 41.667 0.00 0.00 35.33 3.67
2127 3244 5.187186 TGAGGATACCACAGTTTCTCTAACC 59.813 44.000 0.00 0.00 35.33 2.85
2128 3245 6.282199 TGAGGATACCACAGTTTCTCTAAC 57.718 41.667 0.00 0.00 35.06 2.34
2129 3246 5.105310 GCTGAGGATACCACAGTTTCTCTAA 60.105 44.000 14.43 0.00 41.53 2.10
2130 3247 4.402793 GCTGAGGATACCACAGTTTCTCTA 59.597 45.833 14.43 0.00 41.53 2.43
2131 3248 3.196685 GCTGAGGATACCACAGTTTCTCT 59.803 47.826 14.43 0.00 41.53 3.10
2132 3249 3.526534 GCTGAGGATACCACAGTTTCTC 58.473 50.000 14.43 0.00 41.53 2.87
2133 3250 2.237392 GGCTGAGGATACCACAGTTTCT 59.763 50.000 14.43 0.00 41.53 2.52
2134 3251 2.237392 AGGCTGAGGATACCACAGTTTC 59.763 50.000 14.43 7.00 41.53 2.78
2135 3252 2.269940 AGGCTGAGGATACCACAGTTT 58.730 47.619 14.43 3.53 41.53 2.66
2136 3253 1.958288 AGGCTGAGGATACCACAGTT 58.042 50.000 14.43 3.81 41.53 3.16
2137 3254 2.848678 TAGGCTGAGGATACCACAGT 57.151 50.000 14.43 1.77 41.53 3.55
2138 3255 3.234353 TGATAGGCTGAGGATACCACAG 58.766 50.000 10.07 10.07 42.11 3.66
2139 3256 3.117131 TCTGATAGGCTGAGGATACCACA 60.117 47.826 0.00 0.00 37.17 4.17
2140 3257 3.501349 TCTGATAGGCTGAGGATACCAC 58.499 50.000 0.00 0.00 37.17 4.16
2141 3258 3.141083 ACTCTGATAGGCTGAGGATACCA 59.859 47.826 0.00 0.00 44.30 3.25
2142 3259 3.773560 ACTCTGATAGGCTGAGGATACC 58.226 50.000 0.00 0.00 44.30 2.73
2143 3260 5.799827 AAACTCTGATAGGCTGAGGATAC 57.200 43.478 0.00 0.00 44.30 2.24
2144 3261 7.298374 TCTTAAACTCTGATAGGCTGAGGATA 58.702 38.462 0.00 0.00 44.30 2.59
2145 3262 6.139671 TCTTAAACTCTGATAGGCTGAGGAT 58.860 40.000 0.00 0.00 44.30 3.24
2146 3263 5.519808 TCTTAAACTCTGATAGGCTGAGGA 58.480 41.667 0.00 0.00 44.30 3.71
2147 3264 5.860941 TCTTAAACTCTGATAGGCTGAGG 57.139 43.478 0.00 0.00 44.30 3.86
2148 3265 8.729805 AATTTCTTAAACTCTGATAGGCTGAG 57.270 34.615 0.00 0.00 45.19 3.35
2152 3269 9.670719 GCATTAATTTCTTAAACTCTGATAGGC 57.329 33.333 0.00 0.00 30.88 3.93
2157 3274 9.283768 TGTGAGCATTAATTTCTTAAACTCTGA 57.716 29.630 10.36 0.00 36.27 3.27
2195 3312 8.504005 CGGATCGCTGGAAATACTAAAATAAAT 58.496 33.333 0.00 0.00 0.00 1.40
2196 3313 7.857569 CGGATCGCTGGAAATACTAAAATAAA 58.142 34.615 0.00 0.00 0.00 1.40
2197 3314 7.416154 CGGATCGCTGGAAATACTAAAATAA 57.584 36.000 0.00 0.00 0.00 1.40
2199 3316 5.924475 CGGATCGCTGGAAATACTAAAAT 57.076 39.130 0.00 0.00 0.00 1.82
2215 3332 1.502231 CTCCCACTAAATGCGGATCG 58.498 55.000 0.00 0.00 30.11 3.69
2216 3333 1.416401 TCCTCCCACTAAATGCGGATC 59.584 52.381 0.00 0.00 30.11 3.36
2217 3334 1.417890 CTCCTCCCACTAAATGCGGAT 59.582 52.381 0.00 0.00 30.11 4.18
2218 3335 0.830648 CTCCTCCCACTAAATGCGGA 59.169 55.000 0.00 0.00 0.00 5.54
2219 3336 0.830648 TCTCCTCCCACTAAATGCGG 59.169 55.000 0.00 0.00 0.00 5.69
2220 3337 1.802880 CGTCTCCTCCCACTAAATGCG 60.803 57.143 0.00 0.00 0.00 4.73
2221 3338 1.207329 ACGTCTCCTCCCACTAAATGC 59.793 52.381 0.00 0.00 0.00 3.56
2222 3339 3.611766 AACGTCTCCTCCCACTAAATG 57.388 47.619 0.00 0.00 0.00 2.32
2223 3340 4.576879 GAAAACGTCTCCTCCCACTAAAT 58.423 43.478 0.00 0.00 0.00 1.40
2224 3341 3.553508 CGAAAACGTCTCCTCCCACTAAA 60.554 47.826 0.00 0.00 0.00 1.85
2225 3342 2.029649 CGAAAACGTCTCCTCCCACTAA 60.030 50.000 0.00 0.00 0.00 2.24
2226 3343 1.542915 CGAAAACGTCTCCTCCCACTA 59.457 52.381 0.00 0.00 0.00 2.74
2227 3344 0.317479 CGAAAACGTCTCCTCCCACT 59.683 55.000 0.00 0.00 0.00 4.00
2228 3345 0.033090 ACGAAAACGTCTCCTCCCAC 59.967 55.000 0.00 0.00 0.00 4.61
2229 3346 0.316204 GACGAAAACGTCTCCTCCCA 59.684 55.000 14.10 0.00 36.12 4.37
2230 3347 0.731855 CGACGAAAACGTCTCCTCCC 60.732 60.000 17.92 0.00 36.81 4.30
2231 3348 0.239347 TCGACGAAAACGTCTCCTCC 59.761 55.000 17.92 0.00 36.81 4.30
2232 3349 1.325647 GTCGACGAAAACGTCTCCTC 58.674 55.000 17.92 5.01 36.81 3.71
2233 3350 0.385223 CGTCGACGAAAACGTCTCCT 60.385 55.000 33.35 0.00 43.02 3.69
2234 3351 0.384725 TCGTCGACGAAAACGTCTCC 60.385 55.000 36.25 8.99 46.30 3.71
2235 3352 3.062786 TCGTCGACGAAAACGTCTC 57.937 52.632 36.25 11.12 46.30 3.36
2246 3363 0.647925 GTAGGTACCTCGTCGTCGAC 59.352 60.000 20.32 15.51 41.35 4.20
2247 3364 0.802222 CGTAGGTACCTCGTCGTCGA 60.802 60.000 20.32 4.42 44.12 4.20
2248 3365 1.633171 CGTAGGTACCTCGTCGTCG 59.367 63.158 20.32 10.84 38.55 5.12
2262 3379 7.857569 TCTTGAAATTTACAAAGTCACCGTAG 58.142 34.615 0.00 0.00 0.00 3.51
2263 3380 7.789273 TCTTGAAATTTACAAAGTCACCGTA 57.211 32.000 0.00 0.00 0.00 4.02
2264 3381 6.687081 TCTTGAAATTTACAAAGTCACCGT 57.313 33.333 0.00 0.00 0.00 4.83
2265 3382 7.359595 TCATCTTGAAATTTACAAAGTCACCG 58.640 34.615 0.00 0.00 0.00 4.94
2270 3387 9.807649 GGCATATCATCTTGAAATTTACAAAGT 57.192 29.630 0.00 0.00 0.00 2.66
2271 3388 9.806203 TGGCATATCATCTTGAAATTTACAAAG 57.194 29.630 0.00 0.00 0.00 2.77
2272 3389 9.806203 CTGGCATATCATCTTGAAATTTACAAA 57.194 29.630 0.00 0.00 0.00 2.83
2273 3390 7.922278 GCTGGCATATCATCTTGAAATTTACAA 59.078 33.333 0.00 0.00 0.00 2.41
2274 3391 7.286087 AGCTGGCATATCATCTTGAAATTTACA 59.714 33.333 0.00 0.00 0.00 2.41
2275 3392 7.655490 AGCTGGCATATCATCTTGAAATTTAC 58.345 34.615 0.00 0.00 0.00 2.01
2276 3393 7.503230 TGAGCTGGCATATCATCTTGAAATTTA 59.497 33.333 0.00 0.00 0.00 1.40
2277 3394 6.322969 TGAGCTGGCATATCATCTTGAAATTT 59.677 34.615 0.00 0.00 0.00 1.82
2278 3395 5.831525 TGAGCTGGCATATCATCTTGAAATT 59.168 36.000 0.00 0.00 0.00 1.82
2279 3396 5.382616 TGAGCTGGCATATCATCTTGAAAT 58.617 37.500 0.00 0.00 0.00 2.17
2280 3397 4.784177 TGAGCTGGCATATCATCTTGAAA 58.216 39.130 0.00 0.00 0.00 2.69
2281 3398 4.141551 ACTGAGCTGGCATATCATCTTGAA 60.142 41.667 0.00 0.00 0.00 2.69
2282 3399 3.390311 ACTGAGCTGGCATATCATCTTGA 59.610 43.478 0.00 0.00 0.00 3.02
2283 3400 3.741249 ACTGAGCTGGCATATCATCTTG 58.259 45.455 0.00 0.00 0.00 3.02
2284 3401 3.647113 AGACTGAGCTGGCATATCATCTT 59.353 43.478 0.00 0.00 0.00 2.40
2285 3402 3.241156 AGACTGAGCTGGCATATCATCT 58.759 45.455 0.00 5.63 0.00 2.90
2286 3403 3.681593 AGACTGAGCTGGCATATCATC 57.318 47.619 0.00 3.89 0.00 2.92
2287 3404 4.434545 AAAGACTGAGCTGGCATATCAT 57.565 40.909 0.00 0.00 0.00 2.45
2288 3405 3.920231 AAAGACTGAGCTGGCATATCA 57.080 42.857 0.00 0.00 0.00 2.15
2289 3406 4.194640 TCAAAAGACTGAGCTGGCATATC 58.805 43.478 0.00 0.00 0.00 1.63
2290 3407 4.226427 TCAAAAGACTGAGCTGGCATAT 57.774 40.909 0.00 0.00 0.00 1.78
2291 3408 3.701205 TCAAAAGACTGAGCTGGCATA 57.299 42.857 0.00 0.00 0.00 3.14
2292 3409 2.574006 TCAAAAGACTGAGCTGGCAT 57.426 45.000 0.00 0.00 0.00 4.40
2293 3410 2.224606 CTTCAAAAGACTGAGCTGGCA 58.775 47.619 0.00 0.00 0.00 4.92
2294 3411 1.538950 CCTTCAAAAGACTGAGCTGGC 59.461 52.381 0.00 0.00 0.00 4.85
2295 3412 2.551459 CACCTTCAAAAGACTGAGCTGG 59.449 50.000 0.00 0.00 0.00 4.85
2296 3413 2.031333 GCACCTTCAAAAGACTGAGCTG 60.031 50.000 0.00 0.00 0.00 4.24
2297 3414 2.158696 AGCACCTTCAAAAGACTGAGCT 60.159 45.455 0.00 0.00 0.00 4.09
2298 3415 2.225255 GAGCACCTTCAAAAGACTGAGC 59.775 50.000 0.00 0.00 0.00 4.26
2299 3416 3.470709 TGAGCACCTTCAAAAGACTGAG 58.529 45.455 0.00 0.00 0.00 3.35
2300 3417 3.558931 TGAGCACCTTCAAAAGACTGA 57.441 42.857 0.00 0.00 0.00 3.41
2301 3418 4.394300 CCTATGAGCACCTTCAAAAGACTG 59.606 45.833 0.00 0.00 0.00 3.51
2302 3419 4.566488 CCCTATGAGCACCTTCAAAAGACT 60.566 45.833 0.00 0.00 0.00 3.24
2303 3420 3.691609 CCCTATGAGCACCTTCAAAAGAC 59.308 47.826 0.00 0.00 0.00 3.01
2304 3421 3.308402 CCCCTATGAGCACCTTCAAAAGA 60.308 47.826 0.00 0.00 0.00 2.52
2305 3422 3.019564 CCCCTATGAGCACCTTCAAAAG 58.980 50.000 0.00 0.00 0.00 2.27
2306 3423 2.378547 ACCCCTATGAGCACCTTCAAAA 59.621 45.455 0.00 0.00 0.00 2.44
2307 3424 1.992557 ACCCCTATGAGCACCTTCAAA 59.007 47.619 0.00 0.00 0.00 2.69
2308 3425 1.668826 ACCCCTATGAGCACCTTCAA 58.331 50.000 0.00 0.00 0.00 2.69
2309 3426 2.398588 CTACCCCTATGAGCACCTTCA 58.601 52.381 0.00 0.00 0.00 3.02
2310 3427 1.694696 CCTACCCCTATGAGCACCTTC 59.305 57.143 0.00 0.00 0.00 3.46
2311 3428 1.695989 CCCTACCCCTATGAGCACCTT 60.696 57.143 0.00 0.00 0.00 3.50
2312 3429 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
2313 3430 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
2314 3431 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
2315 3432 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
2316 3433 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
2317 3434 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
2318 3435 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
2319 3436 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
2320 3437 1.002533 ACGCACACCCTACCCCTAT 59.997 57.895 0.00 0.00 0.00 2.57
2321 3438 1.985662 CACGCACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
2322 3439 3.319198 CACGCACACCCTACCCCT 61.319 66.667 0.00 0.00 0.00 4.79
2323 3440 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
2324 3441 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
2325 3442 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
2326 3443 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
2327 3444 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
2330 3447 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
2331 3448 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
2332 3449 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
2333 3450 0.450482 GTATGAACGCACACACGCAC 60.450 55.000 0.00 0.00 36.19 5.34
2334 3451 1.856688 GTATGAACGCACACACGCA 59.143 52.632 0.00 0.00 36.19 5.24
2335 3452 1.225368 CGTATGAACGCACACACGC 60.225 57.895 0.86 0.00 43.12 5.34
2336 3453 4.997419 CGTATGAACGCACACACG 57.003 55.556 0.00 0.00 43.12 4.49
2345 3462 5.052567 CGCGCATATACTTATCCGTATGAAC 60.053 44.000 8.75 0.00 32.63 3.18
2346 3463 5.032220 CGCGCATATACTTATCCGTATGAA 58.968 41.667 8.75 0.00 32.63 2.57
2347 3464 4.095334 ACGCGCATATACTTATCCGTATGA 59.905 41.667 5.73 0.00 32.63 2.15
2348 3465 4.204370 CACGCGCATATACTTATCCGTATG 59.796 45.833 5.73 0.00 32.63 2.39
2349 3466 4.142534 ACACGCGCATATACTTATCCGTAT 60.143 41.667 5.73 0.00 34.63 3.06
2350 3467 3.189080 ACACGCGCATATACTTATCCGTA 59.811 43.478 5.73 0.00 0.00 4.02
2351 3468 2.030540 ACACGCGCATATACTTATCCGT 60.031 45.455 5.73 0.00 0.00 4.69
2352 3469 2.592194 ACACGCGCATATACTTATCCG 58.408 47.619 5.73 0.00 0.00 4.18
2353 3470 7.136772 TCATATACACGCGCATATACTTATCC 58.863 38.462 5.73 0.00 0.00 2.59
2354 3471 7.149112 GCTCATATACACGCGCATATACTTATC 60.149 40.741 5.73 0.00 0.00 1.75
2355 3472 6.637254 GCTCATATACACGCGCATATACTTAT 59.363 38.462 5.73 0.00 0.00 1.73
2356 3473 5.969435 GCTCATATACACGCGCATATACTTA 59.031 40.000 5.73 0.00 0.00 2.24
2357 3474 4.798907 GCTCATATACACGCGCATATACTT 59.201 41.667 5.73 0.00 0.00 2.24
2358 3475 4.352039 GCTCATATACACGCGCATATACT 58.648 43.478 5.73 0.00 0.00 2.12
2359 3476 3.177838 CGCTCATATACACGCGCATATAC 59.822 47.826 5.73 0.29 39.11 1.47
2360 3477 3.359654 CGCTCATATACACGCGCATATA 58.640 45.455 5.73 9.29 39.11 0.86
2361 3478 2.185262 CGCTCATATACACGCGCATAT 58.815 47.619 5.73 7.02 39.11 1.78
2362 3479 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
2363 3480 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
2364 3481 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
2367 3484 1.255342 CACACACGCTCATATACACGC 59.745 52.381 0.00 0.00 0.00 5.34
2368 3485 2.526077 ACACACACGCTCATATACACG 58.474 47.619 0.00 0.00 0.00 4.49
2369 3486 4.151689 ACAAACACACACGCTCATATACAC 59.848 41.667 0.00 0.00 0.00 2.90
2370 3487 4.311606 ACAAACACACACGCTCATATACA 58.688 39.130 0.00 0.00 0.00 2.29
2371 3488 4.921470 ACAAACACACACGCTCATATAC 57.079 40.909 0.00 0.00 0.00 1.47
2372 3489 5.575218 CAGTACAAACACACACGCTCATATA 59.425 40.000 0.00 0.00 0.00 0.86
2373 3490 4.388773 CAGTACAAACACACACGCTCATAT 59.611 41.667 0.00 0.00 0.00 1.78
2374 3491 3.738791 CAGTACAAACACACACGCTCATA 59.261 43.478 0.00 0.00 0.00 2.15
2375 3492 2.543848 CAGTACAAACACACACGCTCAT 59.456 45.455 0.00 0.00 0.00 2.90
2376 3493 1.930503 CAGTACAAACACACACGCTCA 59.069 47.619 0.00 0.00 0.00 4.26
2377 3494 1.931172 ACAGTACAAACACACACGCTC 59.069 47.619 0.00 0.00 0.00 5.03
2378 3495 1.663643 CACAGTACAAACACACACGCT 59.336 47.619 0.00 0.00 0.00 5.07
2379 3496 1.395608 ACACAGTACAAACACACACGC 59.604 47.619 0.00 0.00 0.00 5.34
2380 3497 3.733024 AACACAGTACAAACACACACG 57.267 42.857 0.00 0.00 0.00 4.49
2381 3498 7.854934 TTTTAAACACAGTACAAACACACAC 57.145 32.000 0.00 0.00 0.00 3.82
2404 3521 6.329496 CCAACTCACACTGTGTAATGTTTTT 58.671 36.000 13.89 0.00 34.79 1.94
2405 3522 5.163561 CCCAACTCACACTGTGTAATGTTTT 60.164 40.000 13.89 0.00 34.79 2.43
2406 3523 4.338118 CCCAACTCACACTGTGTAATGTTT 59.662 41.667 13.89 0.34 34.79 2.83
2407 3524 3.882888 CCCAACTCACACTGTGTAATGTT 59.117 43.478 13.89 14.57 34.79 2.71
2408 3525 3.476552 CCCAACTCACACTGTGTAATGT 58.523 45.455 13.89 9.60 34.79 2.71
2409 3526 2.813754 CCCCAACTCACACTGTGTAATG 59.186 50.000 13.89 9.73 34.79 1.90
2410 3527 2.814097 GCCCCAACTCACACTGTGTAAT 60.814 50.000 13.89 0.00 34.79 1.89
2411 3528 1.476110 GCCCCAACTCACACTGTGTAA 60.476 52.381 13.89 0.00 34.79 2.41
2412 3529 0.107831 GCCCCAACTCACACTGTGTA 59.892 55.000 13.89 1.86 34.79 2.90
2413 3530 1.152963 GCCCCAACTCACACTGTGT 60.153 57.895 7.80 7.80 34.79 3.72
2414 3531 0.538057 ATGCCCCAACTCACACTGTG 60.538 55.000 6.19 6.19 34.45 3.66
2415 3532 0.185901 AATGCCCCAACTCACACTGT 59.814 50.000 0.00 0.00 0.00 3.55
2416 3533 1.270550 GAAATGCCCCAACTCACACTG 59.729 52.381 0.00 0.00 0.00 3.66
2417 3534 1.133513 TGAAATGCCCCAACTCACACT 60.134 47.619 0.00 0.00 0.00 3.55
2418 3535 1.327303 TGAAATGCCCCAACTCACAC 58.673 50.000 0.00 0.00 0.00 3.82
2419 3536 1.962807 CTTGAAATGCCCCAACTCACA 59.037 47.619 0.00 0.00 0.00 3.58
2420 3537 1.337167 GCTTGAAATGCCCCAACTCAC 60.337 52.381 0.00 0.00 0.00 3.51
2421 3538 0.968405 GCTTGAAATGCCCCAACTCA 59.032 50.000 0.00 0.00 0.00 3.41
2422 3539 0.109132 CGCTTGAAATGCCCCAACTC 60.109 55.000 0.00 0.00 32.62 3.01
2423 3540 1.966762 CGCTTGAAATGCCCCAACT 59.033 52.632 0.00 0.00 32.62 3.16
2424 3541 1.737735 GCGCTTGAAATGCCCCAAC 60.738 57.895 0.00 0.00 32.62 3.77
2527 3698 5.668558 ACAATTTCTTGTTCACGTCTACC 57.331 39.130 0.00 0.00 43.05 3.18
2552 3723 6.227522 AGAAACAAATGAAATAAAACCGGGG 58.772 36.000 6.32 0.00 0.00 5.73
2580 3751 8.984764 ACCGAATTAAAATTTCCTTTTTAGTGC 58.015 29.630 0.00 0.00 38.09 4.40
2687 4355 3.514309 AGTTGCAAGTCTTCGGGTACTAT 59.486 43.478 0.00 0.00 0.00 2.12
2853 4934 2.047655 CGTGCTGGCCGGAAACTA 60.048 61.111 18.31 0.00 0.00 2.24
2883 4964 1.196012 GACCTGGAGAATTCGGAGGT 58.804 55.000 19.94 19.94 38.76 3.85
3115 5235 3.551846 GTTCTTCAGAACCCACAGGAAA 58.448 45.455 8.31 0.00 46.42 3.13
3343 5469 1.754803 ACGATGAAGGCCGAGTTGATA 59.245 47.619 0.00 0.00 0.00 2.15
3511 5640 3.502595 GGTTCTTCTTGGCTACAAACCTC 59.497 47.826 0.00 0.00 35.89 3.85
3656 5785 4.644103 ATCATGTCAGCATAAACCTTGC 57.356 40.909 0.00 0.00 40.45 4.01
4110 6242 3.118884 ACATATCCTTGTACGCGGTCTTT 60.119 43.478 12.47 0.00 0.00 2.52
4119 6251 6.866770 ACATGCGTATGTACATATCCTTGTAC 59.133 38.462 18.03 5.09 45.45 2.90
4131 6263 2.998668 GCACAGACATGCGTATGTAC 57.001 50.000 19.47 12.50 45.61 2.90
4142 6274 0.315251 CTTCTCCTCACGCACAGACA 59.685 55.000 0.00 0.00 0.00 3.41
4146 6278 1.813178 CTCTACTTCTCCTCACGCACA 59.187 52.381 0.00 0.00 0.00 4.57
4148 6280 0.811915 GCTCTACTTCTCCTCACGCA 59.188 55.000 0.00 0.00 0.00 5.24
4160 6292 3.615155 GCCTTTTCTTGATGGCTCTACT 58.385 45.455 0.00 0.00 41.92 2.57
4168 6300 1.200020 GGTGGTCGCCTTTTCTTGATG 59.800 52.381 0.00 0.00 0.00 3.07
4169 6301 1.073923 AGGTGGTCGCCTTTTCTTGAT 59.926 47.619 0.00 0.00 34.71 2.57
4170 6302 0.472471 AGGTGGTCGCCTTTTCTTGA 59.528 50.000 0.00 0.00 34.71 3.02
4171 6303 1.318576 AAGGTGGTCGCCTTTTCTTG 58.681 50.000 9.78 0.00 45.91 3.02
4172 6304 2.943036 TAAGGTGGTCGCCTTTTCTT 57.057 45.000 19.26 0.00 45.91 2.52
4174 6306 2.418976 GTGATAAGGTGGTCGCCTTTTC 59.581 50.000 19.26 19.50 45.91 2.29
4176 6308 1.349688 TGTGATAAGGTGGTCGCCTTT 59.650 47.619 19.26 8.82 45.91 3.11
4178 6310 0.249398 GTGTGATAAGGTGGTCGCCT 59.751 55.000 0.00 0.00 41.41 5.52
4179 6311 0.249398 AGTGTGATAAGGTGGTCGCC 59.751 55.000 0.00 0.00 0.00 5.54
4180 6312 2.953466 TAGTGTGATAAGGTGGTCGC 57.047 50.000 0.00 0.00 0.00 5.19
4181 6313 8.139350 TGTATAAATAGTGTGATAAGGTGGTCG 58.861 37.037 0.00 0.00 0.00 4.79
4182 6314 9.826574 TTGTATAAATAGTGTGATAAGGTGGTC 57.173 33.333 0.00 0.00 0.00 4.02
4214 6346 9.477484 TCGAGCTCATTATCTTTTATTTAGACC 57.523 33.333 15.40 0.00 0.00 3.85
4223 6355 5.751028 GCTACAGTCGAGCTCATTATCTTTT 59.249 40.000 15.40 0.00 36.96 2.27
4225 6357 4.339530 TGCTACAGTCGAGCTCATTATCTT 59.660 41.667 15.40 0.00 40.76 2.40
4254 6386 4.329528 GTCTTGAGAGCACATGATCTTCAC 59.670 45.833 0.00 0.00 41.40 3.18
4278 6410 2.233676 GGAAAATTTGGGACGCTCCAAT 59.766 45.455 10.31 0.00 45.17 3.16
4298 6437 6.884836 GCCCTTTATTACTTACTATCCCATGG 59.115 42.308 4.14 4.14 0.00 3.66
4367 6508 1.371467 TCACCCCAACATCCATGACT 58.629 50.000 0.00 0.00 0.00 3.41
4398 6540 3.206150 GCAGAATCGGACAACATATGGT 58.794 45.455 7.80 0.00 0.00 3.55
4404 6546 4.277239 CGGCAGAATCGGACAACA 57.723 55.556 0.00 0.00 0.00 3.33
4424 6566 3.303938 CCTCTTCATCTCCTGCCTCTAA 58.696 50.000 0.00 0.00 0.00 2.10
4453 6595 7.091533 TGGTATCTCTGTCACATAGAGGATA 57.908 40.000 0.00 0.00 41.54 2.59
4527 6669 0.606944 TTCCGCAACCGCCTTAACAT 60.607 50.000 0.00 0.00 33.11 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.