Multiple sequence alignment - TraesCS6A01G220000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G220000 chr6A 100.000 1685 0 0 952 2636 409083056 409084740 0.000000e+00 3112
1 TraesCS6A01G220000 chr6A 100.000 450 0 0 1 450 409082105 409082554 0.000000e+00 832
2 TraesCS6A01G220000 chr6A 100.000 376 0 0 2913 3288 409085017 409085392 0.000000e+00 695
3 TraesCS6A01G220000 chr6D 97.546 1630 34 4 1010 2636 305365338 305363712 0.000000e+00 2784
4 TraesCS6A01G220000 chr6D 84.942 259 24 8 2913 3171 305363690 305363447 7.050000e-62 248
5 TraesCS6A01G220000 chr6B 96.531 1643 55 2 995 2636 471180600 471182241 0.000000e+00 2717
6 TraesCS6A01G220000 chr6B 89.390 377 23 8 2913 3288 471182266 471182626 2.990000e-125 459
7 TraesCS6A01G220000 chr7B 84.667 450 65 3 2 450 330521727 330522173 2.330000e-121 446


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G220000 chr6A 409082105 409085392 3287 False 1546.333333 3112 100.0000 1 3288 3 chr6A.!!$F1 3287
1 TraesCS6A01G220000 chr6D 305363447 305365338 1891 True 1516.000000 2784 91.2440 1010 3171 2 chr6D.!!$R1 2161
2 TraesCS6A01G220000 chr6B 471180600 471182626 2026 False 1588.000000 2717 92.9605 995 3288 2 chr6B.!!$F1 2293

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.034337 GAGAACACACCTTACCCGCA 59.966 55.0 0.00 0.00 0.0 5.69 F
439 440 0.036306 AGGCGAAAACAATCCGGTCT 59.964 50.0 0.00 0.00 0.0 3.85 F
440 441 0.168128 GGCGAAAACAATCCGGTCTG 59.832 55.0 0.00 2.24 0.0 3.51 F
441 442 0.454452 GCGAAAACAATCCGGTCTGC 60.454 55.0 0.00 0.00 0.0 4.26 F
444 445 0.598065 AAAACAATCCGGTCTGCAGC 59.402 50.0 9.47 4.04 0.0 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1549 1551 0.732880 CAATGGCGACGTCGAACTCT 60.733 55.000 39.74 19.22 43.02 3.24 R
2098 2100 0.538584 CACATCCTAGCAGCAGGTGA 59.461 55.000 3.02 0.00 36.99 4.02 R
2243 2245 4.020485 ACCACATAGTACCTTCCAGTTGAC 60.020 45.833 0.00 0.00 0.00 3.18 R
2274 2276 7.294017 ACATAATGCTAGAAATTCCCCATTG 57.706 36.000 11.19 2.87 0.00 2.82 R
2595 2599 2.604118 TCCGGTGGGGAGAATCTTC 58.396 57.895 0.00 0.00 40.94 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.649782 AATTCATTGGACATGGAGAACAC 57.350 39.130 0.00 0.00 0.00 3.32
23 24 3.786368 TCATTGGACATGGAGAACACA 57.214 42.857 0.00 0.00 0.00 3.72
24 25 3.411446 TCATTGGACATGGAGAACACAC 58.589 45.455 0.00 0.00 0.00 3.82
25 26 2.270352 TTGGACATGGAGAACACACC 57.730 50.000 0.00 0.00 0.00 4.16
26 27 1.434188 TGGACATGGAGAACACACCT 58.566 50.000 0.00 0.00 0.00 4.00
27 28 1.774254 TGGACATGGAGAACACACCTT 59.226 47.619 0.00 0.00 0.00 3.50
28 29 2.976185 TGGACATGGAGAACACACCTTA 59.024 45.455 0.00 0.00 0.00 2.69
29 30 3.244422 TGGACATGGAGAACACACCTTAC 60.244 47.826 0.00 0.00 0.00 2.34
30 31 3.335579 GACATGGAGAACACACCTTACC 58.664 50.000 0.00 0.00 0.00 2.85
31 32 2.039879 ACATGGAGAACACACCTTACCC 59.960 50.000 0.00 0.00 0.00 3.69
32 33 0.682852 TGGAGAACACACCTTACCCG 59.317 55.000 0.00 0.00 0.00 5.28
33 34 0.672711 GGAGAACACACCTTACCCGC 60.673 60.000 0.00 0.00 0.00 6.13
34 35 0.034337 GAGAACACACCTTACCCGCA 59.966 55.000 0.00 0.00 0.00 5.69
35 36 0.470766 AGAACACACCTTACCCGCAA 59.529 50.000 0.00 0.00 0.00 4.85
36 37 1.073284 AGAACACACCTTACCCGCAAT 59.927 47.619 0.00 0.00 0.00 3.56
37 38 1.467342 GAACACACCTTACCCGCAATC 59.533 52.381 0.00 0.00 0.00 2.67
38 39 0.672401 ACACACCTTACCCGCAATCG 60.672 55.000 0.00 0.00 0.00 3.34
39 40 0.390603 CACACCTTACCCGCAATCGA 60.391 55.000 0.00 0.00 38.10 3.59
40 41 0.390735 ACACCTTACCCGCAATCGAC 60.391 55.000 0.00 0.00 38.10 4.20
41 42 1.087771 CACCTTACCCGCAATCGACC 61.088 60.000 0.00 0.00 38.10 4.79
42 43 1.219664 CCTTACCCGCAATCGACCA 59.780 57.895 0.00 0.00 38.10 4.02
43 44 1.087771 CCTTACCCGCAATCGACCAC 61.088 60.000 0.00 0.00 38.10 4.16
44 45 0.108329 CTTACCCGCAATCGACCACT 60.108 55.000 0.00 0.00 38.10 4.00
45 46 0.322322 TTACCCGCAATCGACCACTT 59.678 50.000 0.00 0.00 38.10 3.16
46 47 0.108520 TACCCGCAATCGACCACTTC 60.109 55.000 0.00 0.00 38.10 3.01
47 48 1.375396 CCCGCAATCGACCACTTCA 60.375 57.895 0.00 0.00 38.10 3.02
48 49 0.953471 CCCGCAATCGACCACTTCAA 60.953 55.000 0.00 0.00 38.10 2.69
49 50 0.871722 CCGCAATCGACCACTTCAAA 59.128 50.000 0.00 0.00 38.10 2.69
50 51 1.468520 CCGCAATCGACCACTTCAAAT 59.531 47.619 0.00 0.00 38.10 2.32
51 52 2.095263 CCGCAATCGACCACTTCAAATT 60.095 45.455 0.00 0.00 38.10 1.82
52 53 3.163594 CGCAATCGACCACTTCAAATTC 58.836 45.455 0.00 0.00 38.10 2.17
53 54 3.120199 CGCAATCGACCACTTCAAATTCT 60.120 43.478 0.00 0.00 38.10 2.40
54 55 4.613622 CGCAATCGACCACTTCAAATTCTT 60.614 41.667 0.00 0.00 38.10 2.52
55 56 5.222631 GCAATCGACCACTTCAAATTCTTT 58.777 37.500 0.00 0.00 0.00 2.52
56 57 5.117592 GCAATCGACCACTTCAAATTCTTTG 59.882 40.000 0.00 0.00 41.96 2.77
67 68 5.046910 TCAAATTCTTTGACATCGGCTTC 57.953 39.130 0.00 0.00 44.21 3.86
68 69 4.761739 TCAAATTCTTTGACATCGGCTTCT 59.238 37.500 0.00 0.00 44.21 2.85
69 70 5.241506 TCAAATTCTTTGACATCGGCTTCTT 59.758 36.000 0.00 0.00 44.21 2.52
70 71 4.954092 ATTCTTTGACATCGGCTTCTTC 57.046 40.909 0.00 0.00 0.00 2.87
71 72 2.337583 TCTTTGACATCGGCTTCTTCG 58.662 47.619 0.00 0.00 0.00 3.79
72 73 2.029380 TCTTTGACATCGGCTTCTTCGA 60.029 45.455 0.00 0.00 41.04 3.71
73 74 2.448926 TTGACATCGGCTTCTTCGAA 57.551 45.000 0.00 0.00 40.15 3.71
74 75 2.672961 TGACATCGGCTTCTTCGAAT 57.327 45.000 0.00 0.00 40.15 3.34
75 76 2.540515 TGACATCGGCTTCTTCGAATC 58.459 47.619 0.00 0.00 40.15 2.52
76 77 1.861575 GACATCGGCTTCTTCGAATCC 59.138 52.381 0.00 0.00 40.15 3.01
77 78 1.207089 ACATCGGCTTCTTCGAATCCA 59.793 47.619 0.00 0.00 40.15 3.41
78 79 2.279741 CATCGGCTTCTTCGAATCCAA 58.720 47.619 0.00 0.00 40.15 3.53
79 80 2.010145 TCGGCTTCTTCGAATCCAAG 57.990 50.000 0.00 2.87 33.42 3.61
80 81 1.548719 TCGGCTTCTTCGAATCCAAGA 59.451 47.619 13.21 0.00 33.42 3.02
81 82 2.028476 TCGGCTTCTTCGAATCCAAGAA 60.028 45.455 13.21 3.22 37.50 2.52
82 83 2.742053 CGGCTTCTTCGAATCCAAGAAA 59.258 45.455 13.21 0.00 38.98 2.52
83 84 3.188460 CGGCTTCTTCGAATCCAAGAAAA 59.812 43.478 13.21 0.00 38.98 2.29
84 85 4.320202 CGGCTTCTTCGAATCCAAGAAAAA 60.320 41.667 13.21 0.00 38.98 1.94
102 103 2.388526 AAAAAGCCTTCTGCCTCCTT 57.611 45.000 0.00 0.00 42.71 3.36
103 104 1.625511 AAAAGCCTTCTGCCTCCTTG 58.374 50.000 0.00 0.00 42.71 3.61
104 105 0.480252 AAAGCCTTCTGCCTCCTTGT 59.520 50.000 0.00 0.00 42.71 3.16
105 106 0.037447 AAGCCTTCTGCCTCCTTGTC 59.963 55.000 0.00 0.00 42.71 3.18
106 107 1.377856 GCCTTCTGCCTCCTTGTCC 60.378 63.158 0.00 0.00 0.00 4.02
107 108 2.069776 CCTTCTGCCTCCTTGTCCA 58.930 57.895 0.00 0.00 0.00 4.02
108 109 0.622665 CCTTCTGCCTCCTTGTCCAT 59.377 55.000 0.00 0.00 0.00 3.41
109 110 1.407989 CCTTCTGCCTCCTTGTCCATC 60.408 57.143 0.00 0.00 0.00 3.51
110 111 1.280133 CTTCTGCCTCCTTGTCCATCA 59.720 52.381 0.00 0.00 0.00 3.07
111 112 0.907486 TCTGCCTCCTTGTCCATCAG 59.093 55.000 0.00 0.00 0.00 2.90
112 113 0.907486 CTGCCTCCTTGTCCATCAGA 59.093 55.000 0.00 0.00 0.00 3.27
113 114 0.907486 TGCCTCCTTGTCCATCAGAG 59.093 55.000 0.00 0.00 0.00 3.35
114 115 0.463474 GCCTCCTTGTCCATCAGAGC 60.463 60.000 0.00 0.00 0.00 4.09
115 116 0.179936 CCTCCTTGTCCATCAGAGCC 59.820 60.000 0.00 0.00 0.00 4.70
116 117 0.907486 CTCCTTGTCCATCAGAGCCA 59.093 55.000 0.00 0.00 0.00 4.75
117 118 1.489649 CTCCTTGTCCATCAGAGCCAT 59.510 52.381 0.00 0.00 0.00 4.40
118 119 2.702478 CTCCTTGTCCATCAGAGCCATA 59.298 50.000 0.00 0.00 0.00 2.74
119 120 2.435805 TCCTTGTCCATCAGAGCCATAC 59.564 50.000 0.00 0.00 0.00 2.39
120 121 2.486191 CCTTGTCCATCAGAGCCATACC 60.486 54.545 0.00 0.00 0.00 2.73
121 122 2.180946 TGTCCATCAGAGCCATACCT 57.819 50.000 0.00 0.00 0.00 3.08
122 123 2.042464 TGTCCATCAGAGCCATACCTC 58.958 52.381 0.00 0.00 0.00 3.85
123 124 1.346068 GTCCATCAGAGCCATACCTCC 59.654 57.143 0.00 0.00 32.17 4.30
124 125 0.689623 CCATCAGAGCCATACCTCCC 59.310 60.000 0.00 0.00 32.17 4.30
125 126 1.427809 CATCAGAGCCATACCTCCCA 58.572 55.000 0.00 0.00 32.17 4.37
126 127 1.347050 CATCAGAGCCATACCTCCCAG 59.653 57.143 0.00 0.00 32.17 4.45
127 128 1.050988 TCAGAGCCATACCTCCCAGC 61.051 60.000 0.00 0.00 32.17 4.85
128 129 1.768077 AGAGCCATACCTCCCAGCC 60.768 63.158 0.00 0.00 32.17 4.85
129 130 1.768077 GAGCCATACCTCCCAGCCT 60.768 63.158 0.00 0.00 0.00 4.58
130 131 1.763546 GAGCCATACCTCCCAGCCTC 61.764 65.000 0.00 0.00 0.00 4.70
131 132 3.142393 CCATACCTCCCAGCCTCG 58.858 66.667 0.00 0.00 0.00 4.63
132 133 2.423446 CATACCTCCCAGCCTCGC 59.577 66.667 0.00 0.00 0.00 5.03
133 134 2.844839 ATACCTCCCAGCCTCGCC 60.845 66.667 0.00 0.00 0.00 5.54
134 135 3.696518 ATACCTCCCAGCCTCGCCA 62.697 63.158 0.00 0.00 0.00 5.69
135 136 3.916438 TACCTCCCAGCCTCGCCAA 62.916 63.158 0.00 0.00 0.00 4.52
136 137 4.479993 CCTCCCAGCCTCGCCAAG 62.480 72.222 0.00 0.00 0.00 3.61
137 138 3.393970 CTCCCAGCCTCGCCAAGA 61.394 66.667 0.00 0.00 0.00 3.02
138 139 3.382803 CTCCCAGCCTCGCCAAGAG 62.383 68.421 0.00 0.00 46.44 2.85
146 147 4.116328 TCGCCAAGAGACTCGCGG 62.116 66.667 18.88 13.96 44.56 6.46
147 148 4.421479 CGCCAAGAGACTCGCGGT 62.421 66.667 6.13 2.39 40.91 5.68
148 149 2.811317 GCCAAGAGACTCGCGGTG 60.811 66.667 6.13 1.77 0.00 4.94
149 150 2.125912 CCAAGAGACTCGCGGTGG 60.126 66.667 6.13 0.00 0.00 4.61
150 151 2.125912 CAAGAGACTCGCGGTGGG 60.126 66.667 6.13 0.00 0.00 4.61
151 152 2.282958 AAGAGACTCGCGGTGGGA 60.283 61.111 6.13 0.00 0.00 4.37
152 153 1.682684 AAGAGACTCGCGGTGGGAT 60.683 57.895 6.13 0.00 0.00 3.85
153 154 1.668101 AAGAGACTCGCGGTGGGATC 61.668 60.000 6.13 0.00 0.00 3.36
154 155 3.140225 GAGACTCGCGGTGGGATCC 62.140 68.421 6.13 1.92 0.00 3.36
162 163 3.782443 GGTGGGATCCGGCGTCTT 61.782 66.667 6.01 0.00 0.00 3.01
163 164 2.511600 GTGGGATCCGGCGTCTTG 60.512 66.667 6.01 0.00 0.00 3.02
164 165 3.781307 TGGGATCCGGCGTCTTGG 61.781 66.667 6.01 0.00 0.00 3.61
165 166 3.467226 GGGATCCGGCGTCTTGGA 61.467 66.667 6.01 0.00 38.95 3.53
168 169 2.822399 ATCCGGCGTCTTGGATCC 59.178 61.111 4.20 4.20 41.08 3.36
169 170 2.063979 ATCCGGCGTCTTGGATCCA 61.064 57.895 11.44 11.44 41.08 3.41
170 171 2.032860 ATCCGGCGTCTTGGATCCAG 62.033 60.000 15.53 9.55 41.08 3.86
171 172 2.892425 CGGCGTCTTGGATCCAGC 60.892 66.667 15.53 14.60 0.00 4.85
172 173 2.514824 GGCGTCTTGGATCCAGCC 60.515 66.667 22.86 22.86 37.61 4.85
173 174 2.892425 GCGTCTTGGATCCAGCCG 60.892 66.667 15.53 18.04 0.00 5.52
174 175 2.202932 CGTCTTGGATCCAGCCGG 60.203 66.667 15.53 0.00 0.00 6.13
175 176 2.990479 GTCTTGGATCCAGCCGGT 59.010 61.111 15.53 0.00 0.00 5.28
176 177 1.450312 GTCTTGGATCCAGCCGGTG 60.450 63.158 15.53 0.00 0.00 4.94
177 178 1.612146 TCTTGGATCCAGCCGGTGA 60.612 57.895 15.53 5.22 0.00 4.02
178 179 1.450312 CTTGGATCCAGCCGGTGAC 60.450 63.158 15.53 0.00 0.00 3.67
179 180 2.876368 CTTGGATCCAGCCGGTGACC 62.876 65.000 15.53 0.00 0.00 4.02
180 181 3.083997 GGATCCAGCCGGTGACCT 61.084 66.667 6.95 0.00 0.00 3.85
181 182 2.670148 GGATCCAGCCGGTGACCTT 61.670 63.158 6.95 0.00 0.00 3.50
182 183 1.450312 GATCCAGCCGGTGACCTTG 60.450 63.158 1.90 0.00 0.00 3.61
183 184 3.628646 ATCCAGCCGGTGACCTTGC 62.629 63.158 1.90 2.07 0.00 4.01
190 191 2.124695 GGTGACCTTGCCGATCCC 60.125 66.667 0.00 0.00 0.00 3.85
191 192 2.124695 GTGACCTTGCCGATCCCC 60.125 66.667 0.00 0.00 0.00 4.81
192 193 3.407967 TGACCTTGCCGATCCCCC 61.408 66.667 0.00 0.00 0.00 5.40
193 194 3.090532 GACCTTGCCGATCCCCCT 61.091 66.667 0.00 0.00 0.00 4.79
194 195 3.406595 GACCTTGCCGATCCCCCTG 62.407 68.421 0.00 0.00 0.00 4.45
195 196 4.883354 CCTTGCCGATCCCCCTGC 62.883 72.222 0.00 0.00 0.00 4.85
202 203 3.467226 GATCCCCCTGCGGACGAA 61.467 66.667 0.00 0.00 33.77 3.85
203 204 3.006728 ATCCCCCTGCGGACGAAA 61.007 61.111 0.00 0.00 33.77 3.46
204 205 3.325201 ATCCCCCTGCGGACGAAAC 62.325 63.158 0.00 0.00 33.77 2.78
205 206 4.323477 CCCCCTGCGGACGAAACA 62.323 66.667 0.00 0.00 0.00 2.83
206 207 3.047877 CCCCTGCGGACGAAACAC 61.048 66.667 0.00 0.00 0.00 3.32
207 208 2.030562 CCCTGCGGACGAAACACT 59.969 61.111 0.00 0.00 0.00 3.55
208 209 2.027625 CCCTGCGGACGAAACACTC 61.028 63.158 0.00 0.00 0.00 3.51
216 217 3.081133 CGAAACACTCGCCATCGG 58.919 61.111 0.00 0.00 41.49 4.18
217 218 2.785258 GAAACACTCGCCATCGGC 59.215 61.111 0.00 0.00 46.75 5.54
271 272 4.097361 GGAGGCGGTGTCCCCTTC 62.097 72.222 0.00 0.00 0.00 3.46
272 273 3.003763 GAGGCGGTGTCCCCTTCT 61.004 66.667 0.00 0.00 0.00 2.85
273 274 2.529389 AGGCGGTGTCCCCTTCTT 60.529 61.111 0.00 0.00 0.00 2.52
274 275 2.359975 GGCGGTGTCCCCTTCTTG 60.360 66.667 0.00 0.00 0.00 3.02
275 276 2.430367 GCGGTGTCCCCTTCTTGT 59.570 61.111 0.00 0.00 0.00 3.16
276 277 1.228154 GCGGTGTCCCCTTCTTGTT 60.228 57.895 0.00 0.00 0.00 2.83
277 278 1.515521 GCGGTGTCCCCTTCTTGTTG 61.516 60.000 0.00 0.00 0.00 3.33
278 279 0.889186 CGGTGTCCCCTTCTTGTTGG 60.889 60.000 0.00 0.00 0.00 3.77
279 280 1.179174 GGTGTCCCCTTCTTGTTGGC 61.179 60.000 0.00 0.00 0.00 4.52
280 281 1.152830 TGTCCCCTTCTTGTTGGCC 59.847 57.895 0.00 0.00 0.00 5.36
281 282 1.606601 GTCCCCTTCTTGTTGGCCC 60.607 63.158 0.00 0.00 0.00 5.80
282 283 2.283894 CCCCTTCTTGTTGGCCCC 60.284 66.667 0.00 0.00 0.00 5.80
283 284 2.676471 CCCTTCTTGTTGGCCCCG 60.676 66.667 0.00 0.00 0.00 5.73
284 285 3.373565 CCTTCTTGTTGGCCCCGC 61.374 66.667 0.00 0.00 0.00 6.13
297 298 4.715523 CCCGCCCGCCTCAAAAGA 62.716 66.667 0.00 0.00 0.00 2.52
298 299 3.127533 CCGCCCGCCTCAAAAGAG 61.128 66.667 0.00 0.00 0.00 2.85
299 300 3.127533 CGCCCGCCTCAAAAGAGG 61.128 66.667 7.16 7.16 44.98 3.69
308 309 3.249986 CCTCAAAAGAGGCAGAGAGAG 57.750 52.381 0.00 0.00 35.31 3.20
309 310 2.620242 CTCAAAAGAGGCAGAGAGAGC 58.380 52.381 0.00 0.00 0.00 4.09
315 316 2.415426 GGCAGAGAGAGCCGTAGC 59.585 66.667 0.00 0.00 43.15 3.58
316 317 2.415426 GCAGAGAGAGCCGTAGCC 59.585 66.667 0.00 0.00 41.25 3.93
317 318 3.124686 CAGAGAGAGCCGTAGCCC 58.875 66.667 0.00 0.00 41.25 5.19
318 319 1.454847 CAGAGAGAGCCGTAGCCCT 60.455 63.158 0.00 0.00 41.25 5.19
319 320 1.040339 CAGAGAGAGCCGTAGCCCTT 61.040 60.000 0.00 0.00 41.25 3.95
320 321 1.040339 AGAGAGAGCCGTAGCCCTTG 61.040 60.000 0.00 0.00 41.25 3.61
321 322 1.000486 AGAGAGCCGTAGCCCTTGA 60.000 57.895 0.00 0.00 41.25 3.02
322 323 1.142097 GAGAGCCGTAGCCCTTGAC 59.858 63.158 0.00 0.00 41.25 3.18
323 324 2.202756 GAGCCGTAGCCCTTGACG 60.203 66.667 0.00 0.00 41.25 4.35
324 325 4.452733 AGCCGTAGCCCTTGACGC 62.453 66.667 0.00 0.00 41.25 5.19
325 326 4.752879 GCCGTAGCCCTTGACGCA 62.753 66.667 0.00 0.00 37.75 5.24
326 327 2.509336 CCGTAGCCCTTGACGCAG 60.509 66.667 0.00 0.00 37.75 5.18
327 328 3.188786 CGTAGCCCTTGACGCAGC 61.189 66.667 0.00 0.00 31.49 5.25
328 329 2.820037 GTAGCCCTTGACGCAGCC 60.820 66.667 0.00 0.00 0.00 4.85
329 330 4.451150 TAGCCCTTGACGCAGCCG 62.451 66.667 0.00 0.00 41.14 5.52
345 346 4.697756 CGCCTCCTTGTCCGCCAA 62.698 66.667 0.00 0.00 0.00 4.52
346 347 2.044946 GCCTCCTTGTCCGCCAAT 60.045 61.111 0.00 0.00 31.20 3.16
347 348 2.409870 GCCTCCTTGTCCGCCAATG 61.410 63.158 0.00 0.00 31.20 2.82
348 349 1.002134 CCTCCTTGTCCGCCAATGT 60.002 57.895 0.00 0.00 31.20 2.71
349 350 1.308069 CCTCCTTGTCCGCCAATGTG 61.308 60.000 0.00 0.00 31.20 3.21
350 351 0.321564 CTCCTTGTCCGCCAATGTGA 60.322 55.000 0.00 0.00 31.20 3.58
351 352 0.327924 TCCTTGTCCGCCAATGTGAT 59.672 50.000 0.00 0.00 31.20 3.06
352 353 0.734889 CCTTGTCCGCCAATGTGATC 59.265 55.000 0.00 0.00 31.20 2.92
353 354 1.679944 CCTTGTCCGCCAATGTGATCT 60.680 52.381 0.00 0.00 31.20 2.75
354 355 2.086869 CTTGTCCGCCAATGTGATCTT 58.913 47.619 0.00 0.00 31.20 2.40
355 356 2.198827 TGTCCGCCAATGTGATCTTT 57.801 45.000 0.00 0.00 0.00 2.52
356 357 2.083774 TGTCCGCCAATGTGATCTTTC 58.916 47.619 0.00 0.00 0.00 2.62
357 358 1.401905 GTCCGCCAATGTGATCTTTCC 59.598 52.381 0.00 0.00 0.00 3.13
358 359 1.004161 TCCGCCAATGTGATCTTTCCA 59.996 47.619 0.00 0.00 0.00 3.53
359 360 2.026641 CCGCCAATGTGATCTTTCCAT 58.973 47.619 0.00 0.00 0.00 3.41
360 361 2.033801 CCGCCAATGTGATCTTTCCATC 59.966 50.000 0.00 0.00 0.00 3.51
361 362 2.033801 CGCCAATGTGATCTTTCCATCC 59.966 50.000 0.00 0.00 0.00 3.51
362 363 2.033801 GCCAATGTGATCTTTCCATCCG 59.966 50.000 0.00 0.00 0.00 4.18
363 364 3.282021 CCAATGTGATCTTTCCATCCGT 58.718 45.455 0.00 0.00 0.00 4.69
364 365 4.450976 CCAATGTGATCTTTCCATCCGTA 58.549 43.478 0.00 0.00 0.00 4.02
365 366 4.881273 CCAATGTGATCTTTCCATCCGTAA 59.119 41.667 0.00 0.00 0.00 3.18
366 367 5.220854 CCAATGTGATCTTTCCATCCGTAAC 60.221 44.000 0.00 0.00 0.00 2.50
367 368 3.869065 TGTGATCTTTCCATCCGTAACC 58.131 45.455 0.00 0.00 0.00 2.85
368 369 2.864343 GTGATCTTTCCATCCGTAACCG 59.136 50.000 0.00 0.00 0.00 4.44
369 370 1.865340 GATCTTTCCATCCGTAACCGC 59.135 52.381 0.00 0.00 0.00 5.68
370 371 0.899720 TCTTTCCATCCGTAACCGCT 59.100 50.000 0.00 0.00 0.00 5.52
371 372 1.276989 TCTTTCCATCCGTAACCGCTT 59.723 47.619 0.00 0.00 0.00 4.68
372 373 1.664151 CTTTCCATCCGTAACCGCTTC 59.336 52.381 0.00 0.00 0.00 3.86
373 374 0.899720 TTCCATCCGTAACCGCTTCT 59.100 50.000 0.00 0.00 0.00 2.85
374 375 1.766494 TCCATCCGTAACCGCTTCTA 58.234 50.000 0.00 0.00 0.00 2.10
375 376 2.313317 TCCATCCGTAACCGCTTCTAT 58.687 47.619 0.00 0.00 0.00 1.98
376 377 2.295349 TCCATCCGTAACCGCTTCTATC 59.705 50.000 0.00 0.00 0.00 2.08
377 378 2.609737 CCATCCGTAACCGCTTCTATCC 60.610 54.545 0.00 0.00 0.00 2.59
378 379 0.664761 TCCGTAACCGCTTCTATCCG 59.335 55.000 0.00 0.00 0.00 4.18
379 380 0.664761 CCGTAACCGCTTCTATCCGA 59.335 55.000 0.00 0.00 0.00 4.55
380 381 1.598924 CCGTAACCGCTTCTATCCGAC 60.599 57.143 0.00 0.00 0.00 4.79
381 382 1.332997 CGTAACCGCTTCTATCCGACT 59.667 52.381 0.00 0.00 0.00 4.18
382 383 2.601741 CGTAACCGCTTCTATCCGACTC 60.602 54.545 0.00 0.00 0.00 3.36
383 384 0.381089 AACCGCTTCTATCCGACTCG 59.619 55.000 0.00 0.00 0.00 4.18
384 385 1.370657 CCGCTTCTATCCGACTCGC 60.371 63.158 0.00 0.00 0.00 5.03
385 386 1.370657 CGCTTCTATCCGACTCGCC 60.371 63.158 0.00 0.00 0.00 5.54
386 387 1.734137 GCTTCTATCCGACTCGCCA 59.266 57.895 0.00 0.00 0.00 5.69
387 388 0.315568 GCTTCTATCCGACTCGCCAT 59.684 55.000 0.00 0.00 0.00 4.40
388 389 1.667467 GCTTCTATCCGACTCGCCATC 60.667 57.143 0.00 0.00 0.00 3.51
389 390 1.883275 CTTCTATCCGACTCGCCATCT 59.117 52.381 0.00 0.00 0.00 2.90
390 391 1.524848 TCTATCCGACTCGCCATCTC 58.475 55.000 0.00 0.00 0.00 2.75
391 392 0.523966 CTATCCGACTCGCCATCTCC 59.476 60.000 0.00 0.00 0.00 3.71
392 393 1.235281 TATCCGACTCGCCATCTCCG 61.235 60.000 0.00 0.00 0.00 4.63
393 394 4.933064 CCGACTCGCCATCTCCGC 62.933 72.222 0.00 0.00 0.00 5.54
394 395 4.933064 CGACTCGCCATCTCCGCC 62.933 72.222 0.00 0.00 0.00 6.13
395 396 3.838271 GACTCGCCATCTCCGCCA 61.838 66.667 0.00 0.00 0.00 5.69
396 397 3.157217 GACTCGCCATCTCCGCCAT 62.157 63.158 0.00 0.00 0.00 4.40
397 398 2.109799 CTCGCCATCTCCGCCATT 59.890 61.111 0.00 0.00 0.00 3.16
398 399 2.203056 TCGCCATCTCCGCCATTG 60.203 61.111 0.00 0.00 0.00 2.82
399 400 3.282157 CGCCATCTCCGCCATTGG 61.282 66.667 0.00 0.00 0.00 3.16
400 401 3.599704 GCCATCTCCGCCATTGGC 61.600 66.667 18.10 18.10 46.94 4.52
421 422 4.120755 GCCCCCTGCCAGAGGAAG 62.121 72.222 0.00 0.00 46.33 3.46
428 429 4.397348 GCCAGAGGAAGGCGAAAA 57.603 55.556 0.00 0.00 43.15 2.29
429 430 1.876664 GCCAGAGGAAGGCGAAAAC 59.123 57.895 0.00 0.00 43.15 2.43
430 431 0.889186 GCCAGAGGAAGGCGAAAACA 60.889 55.000 0.00 0.00 43.15 2.83
431 432 1.604604 CCAGAGGAAGGCGAAAACAA 58.395 50.000 0.00 0.00 0.00 2.83
432 433 2.162681 CCAGAGGAAGGCGAAAACAAT 58.837 47.619 0.00 0.00 0.00 2.71
433 434 2.162408 CCAGAGGAAGGCGAAAACAATC 59.838 50.000 0.00 0.00 0.00 2.67
434 435 2.162408 CAGAGGAAGGCGAAAACAATCC 59.838 50.000 0.00 0.00 0.00 3.01
435 436 1.130561 GAGGAAGGCGAAAACAATCCG 59.869 52.381 0.00 0.00 32.22 4.18
436 437 0.170339 GGAAGGCGAAAACAATCCGG 59.830 55.000 0.00 0.00 0.00 5.14
437 438 0.879090 GAAGGCGAAAACAATCCGGT 59.121 50.000 0.00 0.00 0.00 5.28
438 439 0.879090 AAGGCGAAAACAATCCGGTC 59.121 50.000 0.00 0.00 0.00 4.79
439 440 0.036306 AGGCGAAAACAATCCGGTCT 59.964 50.000 0.00 0.00 0.00 3.85
440 441 0.168128 GGCGAAAACAATCCGGTCTG 59.832 55.000 0.00 2.24 0.00 3.51
441 442 0.454452 GCGAAAACAATCCGGTCTGC 60.454 55.000 0.00 0.00 0.00 4.26
442 443 0.871722 CGAAAACAATCCGGTCTGCA 59.128 50.000 0.00 0.00 0.00 4.41
443 444 1.135972 CGAAAACAATCCGGTCTGCAG 60.136 52.381 7.63 7.63 0.00 4.41
444 445 0.598065 AAAACAATCCGGTCTGCAGC 59.402 50.000 9.47 4.04 0.00 5.25
445 446 1.577328 AAACAATCCGGTCTGCAGCG 61.577 55.000 9.47 7.88 43.40 5.18
971 972 1.067516 GGAGAGAGAGATCAGTGCTGC 59.932 57.143 0.00 0.00 0.00 5.25
972 973 2.026641 GAGAGAGAGATCAGTGCTGCT 58.973 52.381 0.00 0.00 0.00 4.24
973 974 3.213506 GAGAGAGAGATCAGTGCTGCTA 58.786 50.000 0.00 0.00 0.00 3.49
974 975 3.822735 GAGAGAGAGATCAGTGCTGCTAT 59.177 47.826 0.00 0.00 0.00 2.97
975 976 3.570975 AGAGAGAGATCAGTGCTGCTATG 59.429 47.826 0.00 0.00 0.00 2.23
976 977 2.036217 AGAGAGATCAGTGCTGCTATGC 59.964 50.000 0.00 0.00 0.00 3.14
977 978 1.761198 AGAGATCAGTGCTGCTATGCA 59.239 47.619 0.00 0.00 41.05 3.96
978 979 2.169978 AGAGATCAGTGCTGCTATGCAA 59.830 45.455 0.00 0.00 45.12 4.08
979 980 2.941064 GAGATCAGTGCTGCTATGCAAA 59.059 45.455 0.00 0.00 45.12 3.68
980 981 2.943690 AGATCAGTGCTGCTATGCAAAG 59.056 45.455 0.00 0.00 45.12 2.77
981 982 2.189594 TCAGTGCTGCTATGCAAAGT 57.810 45.000 0.00 0.00 45.12 2.66
982 983 2.507484 TCAGTGCTGCTATGCAAAGTT 58.493 42.857 0.00 0.00 45.12 2.66
983 984 2.886523 TCAGTGCTGCTATGCAAAGTTT 59.113 40.909 0.00 0.00 45.12 2.66
984 985 3.058016 TCAGTGCTGCTATGCAAAGTTTC 60.058 43.478 0.00 0.00 45.12 2.78
985 986 2.095567 AGTGCTGCTATGCAAAGTTTCG 60.096 45.455 0.00 0.00 45.12 3.46
986 987 1.879380 TGCTGCTATGCAAAGTTTCGT 59.121 42.857 0.00 0.00 40.29 3.85
987 988 3.070748 TGCTGCTATGCAAAGTTTCGTA 58.929 40.909 0.00 0.00 40.29 3.43
988 989 3.120338 TGCTGCTATGCAAAGTTTCGTAC 60.120 43.478 0.00 0.00 40.29 3.67
989 990 3.659735 CTGCTATGCAAAGTTTCGTACG 58.340 45.455 9.53 9.53 38.41 3.67
990 991 2.159761 TGCTATGCAAAGTTTCGTACGC 60.160 45.455 11.24 0.00 34.76 4.42
991 992 2.159761 GCTATGCAAAGTTTCGTACGCA 60.160 45.455 11.24 0.00 0.00 5.24
992 993 2.594529 ATGCAAAGTTTCGTACGCAG 57.405 45.000 11.24 0.00 32.10 5.18
993 994 1.573026 TGCAAAGTTTCGTACGCAGA 58.427 45.000 11.24 0.00 0.00 4.26
1061 1063 3.441572 AGAAGGAAATCATTGGCGTCTTG 59.558 43.478 0.00 0.00 0.00 3.02
1101 1103 2.103771 CAGATCTCGATCCCACCATGTT 59.896 50.000 0.00 0.00 38.58 2.71
1549 1551 3.458163 GATCACCTCGCCCACCGA 61.458 66.667 0.00 0.00 45.15 4.69
1687 1689 2.654912 CGCGGTCTTCCAACACGTC 61.655 63.158 0.00 0.00 0.00 4.34
1867 1869 0.812549 TGTGCCTAATGTACTCGCGA 59.187 50.000 9.26 9.26 0.00 5.87
2243 2245 1.321474 ATGTGGTTGCAGTGACTTGG 58.679 50.000 0.00 0.00 0.00 3.61
2274 2276 6.711645 TGGAAGGTACTATGTGGTTAACAAAC 59.288 38.462 8.10 5.86 39.84 2.93
2334 2336 6.519679 AATGCAGTGATCATATGTGTTTGT 57.480 33.333 0.00 0.00 0.00 2.83
2458 2460 7.686434 TCCTGTTGTTATCCTTACTAAAAGCT 58.314 34.615 0.00 0.00 0.00 3.74
2595 2599 3.389925 ACAAATGTTGTGGCCAAGATG 57.610 42.857 7.24 2.51 43.48 2.90
2596 2600 2.964464 ACAAATGTTGTGGCCAAGATGA 59.036 40.909 7.24 0.00 43.48 2.92
2610 2615 3.549794 CAAGATGAAGATTCTCCCCACC 58.450 50.000 0.00 0.00 0.00 4.61
2933 2938 3.279434 GAATATGGGGACGGATTATGGC 58.721 50.000 0.00 0.00 0.00 4.40
2959 2964 7.322699 CGTGCTTGTTTTAACCAATAAGTAGTG 59.677 37.037 0.00 0.00 29.84 2.74
3053 3058 8.360325 TGGTAACACTTATTGTAGCGATAATG 57.640 34.615 0.00 0.00 46.17 1.90
3064 3069 6.588348 TGTAGCGATAATGATGTCAGTTTG 57.412 37.500 0.00 0.00 0.00 2.93
3070 3075 3.665745 AATGATGTCAGTTTGTTGCCC 57.334 42.857 0.00 0.00 0.00 5.36
3107 3112 6.085555 TCTCTTAGTACCTTGAGTTGTGTG 57.914 41.667 0.00 0.00 0.00 3.82
3110 3115 2.404559 AGTACCTTGAGTTGTGTGGGA 58.595 47.619 0.00 0.00 0.00 4.37
3114 3119 2.958355 ACCTTGAGTTGTGTGGGATTTG 59.042 45.455 0.00 0.00 0.00 2.32
3115 3120 2.958355 CCTTGAGTTGTGTGGGATTTGT 59.042 45.455 0.00 0.00 0.00 2.83
3116 3121 4.141287 CCTTGAGTTGTGTGGGATTTGTA 58.859 43.478 0.00 0.00 0.00 2.41
3117 3122 4.216257 CCTTGAGTTGTGTGGGATTTGTAG 59.784 45.833 0.00 0.00 0.00 2.74
3118 3123 3.750371 TGAGTTGTGTGGGATTTGTAGG 58.250 45.455 0.00 0.00 0.00 3.18
3119 3124 2.488153 GAGTTGTGTGGGATTTGTAGGC 59.512 50.000 0.00 0.00 0.00 3.93
3120 3125 2.108250 AGTTGTGTGGGATTTGTAGGCT 59.892 45.455 0.00 0.00 0.00 4.58
3121 3126 2.890945 GTTGTGTGGGATTTGTAGGCTT 59.109 45.455 0.00 0.00 0.00 4.35
3122 3127 3.237268 TGTGTGGGATTTGTAGGCTTT 57.763 42.857 0.00 0.00 0.00 3.51
3123 3128 3.153919 TGTGTGGGATTTGTAGGCTTTC 58.846 45.455 0.00 0.00 0.00 2.62
3131 3136 5.007724 GGGATTTGTAGGCTTTCGTTATCAG 59.992 44.000 0.00 0.00 0.00 2.90
3166 3171 6.837568 AGATTTCATTCCATGCCTCAGTTAAT 59.162 34.615 0.00 0.00 0.00 1.40
3167 3172 8.000709 AGATTTCATTCCATGCCTCAGTTAATA 58.999 33.333 0.00 0.00 0.00 0.98
3168 3173 6.942532 TTCATTCCATGCCTCAGTTAATAC 57.057 37.500 0.00 0.00 0.00 1.89
3200 3205 5.067544 TGTGTCATGATGATTTTGTGTGTGT 59.932 36.000 0.00 0.00 0.00 3.72
3201 3206 5.400188 GTGTCATGATGATTTTGTGTGTGTG 59.600 40.000 0.00 0.00 0.00 3.82
3207 3212 8.803799 CATGATGATTTTGTGTGTGTGATTATG 58.196 33.333 0.00 0.00 0.00 1.90
3219 3225 7.749126 GTGTGTGTGATTATGTTAGTTAAAGCC 59.251 37.037 0.00 0.00 0.00 4.35
3263 3269 9.890629 ATATATGTGTTGTCGCCAATAGAATAT 57.109 29.630 0.00 0.00 32.11 1.28
3269 3275 3.319689 TGTCGCCAATAGAATATCGTGGA 59.680 43.478 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.047802 GTGTGTTCTCCATGTCCAATGAATT 60.048 40.000 0.00 0.00 0.00 2.17
1 2 4.460382 GTGTGTTCTCCATGTCCAATGAAT 59.540 41.667 0.00 0.00 0.00 2.57
2 3 3.820467 GTGTGTTCTCCATGTCCAATGAA 59.180 43.478 0.00 0.00 0.00 2.57
3 4 3.411446 GTGTGTTCTCCATGTCCAATGA 58.589 45.455 0.00 0.00 0.00 2.57
4 5 2.489329 GGTGTGTTCTCCATGTCCAATG 59.511 50.000 0.00 0.00 0.00 2.82
5 6 2.376518 AGGTGTGTTCTCCATGTCCAAT 59.623 45.455 0.00 0.00 0.00 3.16
6 7 1.774254 AGGTGTGTTCTCCATGTCCAA 59.226 47.619 0.00 0.00 0.00 3.53
7 8 1.434188 AGGTGTGTTCTCCATGTCCA 58.566 50.000 0.00 0.00 0.00 4.02
8 9 2.568623 AAGGTGTGTTCTCCATGTCC 57.431 50.000 0.00 0.00 0.00 4.02
9 10 3.335579 GGTAAGGTGTGTTCTCCATGTC 58.664 50.000 0.00 0.00 0.00 3.06
10 11 2.039879 GGGTAAGGTGTGTTCTCCATGT 59.960 50.000 0.00 0.00 0.00 3.21
11 12 2.711542 GGGTAAGGTGTGTTCTCCATG 58.288 52.381 0.00 0.00 0.00 3.66
12 13 1.278127 CGGGTAAGGTGTGTTCTCCAT 59.722 52.381 0.00 0.00 0.00 3.41
13 14 0.682852 CGGGTAAGGTGTGTTCTCCA 59.317 55.000 0.00 0.00 0.00 3.86
14 15 0.672711 GCGGGTAAGGTGTGTTCTCC 60.673 60.000 0.00 0.00 0.00 3.71
15 16 0.034337 TGCGGGTAAGGTGTGTTCTC 59.966 55.000 0.00 0.00 0.00 2.87
16 17 0.470766 TTGCGGGTAAGGTGTGTTCT 59.529 50.000 0.00 0.00 0.00 3.01
17 18 1.467342 GATTGCGGGTAAGGTGTGTTC 59.533 52.381 0.00 0.00 0.00 3.18
18 19 1.530323 GATTGCGGGTAAGGTGTGTT 58.470 50.000 0.00 0.00 0.00 3.32
19 20 0.672401 CGATTGCGGGTAAGGTGTGT 60.672 55.000 0.00 0.00 0.00 3.72
20 21 0.390603 TCGATTGCGGGTAAGGTGTG 60.391 55.000 0.00 0.00 38.28 3.82
21 22 0.390735 GTCGATTGCGGGTAAGGTGT 60.391 55.000 0.00 0.00 38.28 4.16
22 23 1.087771 GGTCGATTGCGGGTAAGGTG 61.088 60.000 0.00 0.00 38.28 4.00
23 24 1.219935 GGTCGATTGCGGGTAAGGT 59.780 57.895 0.00 0.00 38.28 3.50
24 25 1.087771 GTGGTCGATTGCGGGTAAGG 61.088 60.000 0.00 0.00 38.28 2.69
25 26 0.108329 AGTGGTCGATTGCGGGTAAG 60.108 55.000 0.00 0.00 38.28 2.34
26 27 0.322322 AAGTGGTCGATTGCGGGTAA 59.678 50.000 0.00 0.00 38.28 2.85
27 28 0.108520 GAAGTGGTCGATTGCGGGTA 60.109 55.000 0.00 0.00 38.28 3.69
28 29 1.375523 GAAGTGGTCGATTGCGGGT 60.376 57.895 0.00 0.00 38.28 5.28
29 30 0.953471 TTGAAGTGGTCGATTGCGGG 60.953 55.000 0.00 0.00 38.28 6.13
30 31 0.871722 TTTGAAGTGGTCGATTGCGG 59.128 50.000 0.00 0.00 38.28 5.69
31 32 2.900122 ATTTGAAGTGGTCGATTGCG 57.100 45.000 0.00 0.00 39.35 4.85
32 33 4.425577 AGAATTTGAAGTGGTCGATTGC 57.574 40.909 0.00 0.00 0.00 3.56
47 48 5.617751 CGAAGAAGCCGATGTCAAAGAATTT 60.618 40.000 0.00 0.00 40.26 1.82
48 49 4.142816 CGAAGAAGCCGATGTCAAAGAATT 60.143 41.667 0.00 0.00 0.00 2.17
49 50 3.372206 CGAAGAAGCCGATGTCAAAGAAT 59.628 43.478 0.00 0.00 0.00 2.40
50 51 2.736721 CGAAGAAGCCGATGTCAAAGAA 59.263 45.455 0.00 0.00 0.00 2.52
51 52 2.029380 TCGAAGAAGCCGATGTCAAAGA 60.029 45.455 0.00 0.00 0.00 2.52
52 53 2.337583 TCGAAGAAGCCGATGTCAAAG 58.662 47.619 0.00 0.00 0.00 2.77
53 54 2.448926 TCGAAGAAGCCGATGTCAAA 57.551 45.000 0.00 0.00 0.00 2.69
54 55 2.448926 TTCGAAGAAGCCGATGTCAA 57.551 45.000 0.00 0.00 45.90 3.18
55 56 2.540515 GATTCGAAGAAGCCGATGTCA 58.459 47.619 3.35 0.00 45.90 3.58
56 57 1.861575 GGATTCGAAGAAGCCGATGTC 59.138 52.381 3.35 0.00 45.90 3.06
57 58 1.207089 TGGATTCGAAGAAGCCGATGT 59.793 47.619 11.70 0.00 45.90 3.06
58 59 1.939974 TGGATTCGAAGAAGCCGATG 58.060 50.000 11.70 0.00 45.90 3.84
59 60 2.168521 TCTTGGATTCGAAGAAGCCGAT 59.831 45.455 8.48 0.00 45.90 4.18
60 61 1.548719 TCTTGGATTCGAAGAAGCCGA 59.451 47.619 8.48 9.26 45.90 5.54
61 62 2.010145 TCTTGGATTCGAAGAAGCCG 57.990 50.000 8.48 0.13 45.90 5.52
62 63 4.766404 TTTTCTTGGATTCGAAGAAGCC 57.234 40.909 19.07 9.85 45.90 4.35
88 89 1.377856 GGACAAGGAGGCAGAAGGC 60.378 63.158 0.00 0.00 43.74 4.35
89 90 0.622665 ATGGACAAGGAGGCAGAAGG 59.377 55.000 0.00 0.00 0.00 3.46
90 91 1.280133 TGATGGACAAGGAGGCAGAAG 59.720 52.381 0.00 0.00 0.00 2.85
91 92 1.280133 CTGATGGACAAGGAGGCAGAA 59.720 52.381 0.00 0.00 0.00 3.02
92 93 0.907486 CTGATGGACAAGGAGGCAGA 59.093 55.000 0.00 0.00 0.00 4.26
93 94 0.907486 TCTGATGGACAAGGAGGCAG 59.093 55.000 0.00 0.00 0.00 4.85
94 95 0.907486 CTCTGATGGACAAGGAGGCA 59.093 55.000 0.00 0.00 0.00 4.75
95 96 0.463474 GCTCTGATGGACAAGGAGGC 60.463 60.000 0.00 0.00 0.00 4.70
96 97 0.179936 GGCTCTGATGGACAAGGAGG 59.820 60.000 0.00 0.00 0.00 4.30
97 98 0.907486 TGGCTCTGATGGACAAGGAG 59.093 55.000 0.00 0.00 0.00 3.69
98 99 1.588239 ATGGCTCTGATGGACAAGGA 58.412 50.000 0.00 0.00 0.00 3.36
99 100 2.486191 GGTATGGCTCTGATGGACAAGG 60.486 54.545 0.00 0.00 0.00 3.61
100 101 2.437281 AGGTATGGCTCTGATGGACAAG 59.563 50.000 0.00 0.00 0.00 3.16
101 102 2.435805 GAGGTATGGCTCTGATGGACAA 59.564 50.000 0.00 0.00 0.00 3.18
102 103 2.042464 GAGGTATGGCTCTGATGGACA 58.958 52.381 0.00 0.00 0.00 4.02
103 104 1.346068 GGAGGTATGGCTCTGATGGAC 59.654 57.143 0.00 0.00 0.00 4.02
104 105 1.722034 GGAGGTATGGCTCTGATGGA 58.278 55.000 0.00 0.00 0.00 3.41
105 106 0.689623 GGGAGGTATGGCTCTGATGG 59.310 60.000 0.00 0.00 0.00 3.51
106 107 1.347050 CTGGGAGGTATGGCTCTGATG 59.653 57.143 0.00 0.00 0.00 3.07
107 108 1.727062 CTGGGAGGTATGGCTCTGAT 58.273 55.000 0.00 0.00 0.00 2.90
108 109 1.050988 GCTGGGAGGTATGGCTCTGA 61.051 60.000 0.00 0.00 0.00 3.27
109 110 1.449353 GCTGGGAGGTATGGCTCTG 59.551 63.158 0.00 0.00 0.00 3.35
110 111 1.768077 GGCTGGGAGGTATGGCTCT 60.768 63.158 0.00 0.00 0.00 4.09
111 112 1.763546 GAGGCTGGGAGGTATGGCTC 61.764 65.000 0.00 0.00 43.00 4.70
112 113 1.768077 GAGGCTGGGAGGTATGGCT 60.768 63.158 0.00 0.00 38.03 4.75
113 114 2.832498 GAGGCTGGGAGGTATGGC 59.168 66.667 0.00 0.00 0.00 4.40
114 115 3.142393 CGAGGCTGGGAGGTATGG 58.858 66.667 0.00 0.00 0.00 2.74
115 116 2.423446 GCGAGGCTGGGAGGTATG 59.577 66.667 0.00 0.00 0.00 2.39
116 117 2.844839 GGCGAGGCTGGGAGGTAT 60.845 66.667 0.00 0.00 0.00 2.73
117 118 3.916438 TTGGCGAGGCTGGGAGGTA 62.916 63.158 0.00 0.00 0.00 3.08
119 120 4.479993 CTTGGCGAGGCTGGGAGG 62.480 72.222 0.00 0.00 0.00 4.30
120 121 3.382803 CTCTTGGCGAGGCTGGGAG 62.383 68.421 0.97 0.00 36.06 4.30
121 122 3.393970 CTCTTGGCGAGGCTGGGA 61.394 66.667 0.97 0.00 36.06 4.37
122 123 3.393970 TCTCTTGGCGAGGCTGGG 61.394 66.667 0.97 0.00 40.30 4.45
123 124 2.125350 GTCTCTTGGCGAGGCTGG 60.125 66.667 0.97 0.00 41.24 4.85
126 127 2.202676 CGAGTCTCTTGGCGAGGC 60.203 66.667 0.97 0.00 44.86 4.70
127 128 2.202676 GCGAGTCTCTTGGCGAGG 60.203 66.667 0.97 0.00 40.30 4.63
131 132 2.811317 CACCGCGAGTCTCTTGGC 60.811 66.667 8.23 0.00 0.00 4.52
132 133 2.125912 CCACCGCGAGTCTCTTGG 60.126 66.667 8.23 2.15 0.00 3.61
133 134 1.949847 ATCCCACCGCGAGTCTCTTG 61.950 60.000 8.23 0.00 0.00 3.02
134 135 1.668101 GATCCCACCGCGAGTCTCTT 61.668 60.000 8.23 0.00 0.00 2.85
135 136 2.043852 ATCCCACCGCGAGTCTCT 60.044 61.111 8.23 0.00 0.00 3.10
136 137 2.413765 GATCCCACCGCGAGTCTC 59.586 66.667 8.23 0.00 0.00 3.36
137 138 3.148279 GGATCCCACCGCGAGTCT 61.148 66.667 8.23 0.00 0.00 3.24
138 139 4.570663 CGGATCCCACCGCGAGTC 62.571 72.222 8.23 0.00 46.20 3.36
145 146 3.782443 AAGACGCCGGATCCCACC 61.782 66.667 5.05 0.00 0.00 4.61
146 147 2.511600 CAAGACGCCGGATCCCAC 60.512 66.667 5.05 0.00 0.00 4.61
147 148 3.781307 CCAAGACGCCGGATCCCA 61.781 66.667 5.05 0.00 0.00 4.37
148 149 2.808206 ATCCAAGACGCCGGATCCC 61.808 63.158 5.05 0.00 37.46 3.85
149 150 2.822399 ATCCAAGACGCCGGATCC 59.178 61.111 5.05 0.00 37.46 3.36
151 152 2.032860 CTGGATCCAAGACGCCGGAT 62.033 60.000 17.00 0.00 44.89 4.18
152 153 2.682136 TGGATCCAAGACGCCGGA 60.682 61.111 13.46 0.00 35.27 5.14
153 154 2.202932 CTGGATCCAAGACGCCGG 60.203 66.667 17.00 0.00 0.00 6.13
154 155 2.892425 GCTGGATCCAAGACGCCG 60.892 66.667 17.00 3.03 0.00 6.46
155 156 2.514824 GGCTGGATCCAAGACGCC 60.515 66.667 22.86 22.86 0.00 5.68
156 157 2.892425 CGGCTGGATCCAAGACGC 60.892 66.667 21.36 17.89 0.00 5.19
157 158 2.202932 CCGGCTGGATCCAAGACG 60.203 66.667 24.38 24.38 37.49 4.18
158 159 1.450312 CACCGGCTGGATCCAAGAC 60.450 63.158 21.41 11.19 39.21 3.01
159 160 1.612146 TCACCGGCTGGATCCAAGA 60.612 57.895 21.41 4.41 39.21 3.02
160 161 1.450312 GTCACCGGCTGGATCCAAG 60.450 63.158 21.41 11.06 39.21 3.61
161 162 2.668632 GTCACCGGCTGGATCCAA 59.331 61.111 21.41 0.00 39.21 3.53
162 163 3.399181 GGTCACCGGCTGGATCCA 61.399 66.667 21.41 15.27 39.21 3.41
163 164 2.670148 AAGGTCACCGGCTGGATCC 61.670 63.158 21.41 16.51 39.21 3.36
164 165 1.450312 CAAGGTCACCGGCTGGATC 60.450 63.158 21.41 7.70 39.21 3.36
165 166 2.671070 CAAGGTCACCGGCTGGAT 59.329 61.111 21.41 0.00 39.21 3.41
166 167 4.329545 GCAAGGTCACCGGCTGGA 62.330 66.667 21.41 0.00 39.21 3.86
173 174 2.124695 GGGATCGGCAAGGTCACC 60.125 66.667 0.00 0.00 0.00 4.02
174 175 2.124695 GGGGATCGGCAAGGTCAC 60.125 66.667 0.00 0.00 30.82 3.67
175 176 3.407967 GGGGGATCGGCAAGGTCA 61.408 66.667 0.00 0.00 0.00 4.02
176 177 3.090532 AGGGGGATCGGCAAGGTC 61.091 66.667 0.00 0.00 0.00 3.85
177 178 3.411517 CAGGGGGATCGGCAAGGT 61.412 66.667 0.00 0.00 0.00 3.50
178 179 4.883354 GCAGGGGGATCGGCAAGG 62.883 72.222 0.00 0.00 0.00 3.61
191 192 2.372690 CGAGTGTTTCGTCCGCAGG 61.373 63.158 0.00 0.00 45.95 4.85
192 193 3.147294 CGAGTGTTTCGTCCGCAG 58.853 61.111 0.00 0.00 44.27 5.18
200 201 2.785258 GCCGATGGCGAGTGTTTC 59.215 61.111 0.00 0.00 39.62 2.78
257 258 2.359975 CAAGAAGGGGACACCGCC 60.360 66.667 0.00 0.00 46.96 6.13
258 259 1.228154 AACAAGAAGGGGACACCGC 60.228 57.895 0.00 0.00 46.96 5.68
259 260 0.889186 CCAACAAGAAGGGGACACCG 60.889 60.000 0.00 0.00 46.96 4.94
260 261 1.179174 GCCAACAAGAAGGGGACACC 61.179 60.000 0.00 0.00 40.67 4.16
261 262 1.179174 GGCCAACAAGAAGGGGACAC 61.179 60.000 0.00 0.00 0.00 3.67
262 263 1.152830 GGCCAACAAGAAGGGGACA 59.847 57.895 0.00 0.00 0.00 4.02
263 264 1.606601 GGGCCAACAAGAAGGGGAC 60.607 63.158 4.39 0.00 0.00 4.46
264 265 2.851045 GGGCCAACAAGAAGGGGA 59.149 61.111 4.39 0.00 0.00 4.81
265 266 2.283894 GGGGCCAACAAGAAGGGG 60.284 66.667 4.39 0.00 0.00 4.79
266 267 2.676471 CGGGGCCAACAAGAAGGG 60.676 66.667 4.39 0.00 0.00 3.95
267 268 3.373565 GCGGGGCCAACAAGAAGG 61.374 66.667 4.39 0.00 0.00 3.46
280 281 4.715523 TCTTTTGAGGCGGGCGGG 62.716 66.667 0.00 0.00 0.00 6.13
281 282 3.127533 CTCTTTTGAGGCGGGCGG 61.128 66.667 0.00 0.00 42.66 6.13
289 290 2.620242 GCTCTCTCTGCCTCTTTTGAG 58.380 52.381 0.00 0.00 45.83 3.02
290 291 1.277557 GGCTCTCTCTGCCTCTTTTGA 59.722 52.381 0.00 0.00 46.38 2.69
291 292 1.736612 GGCTCTCTCTGCCTCTTTTG 58.263 55.000 0.00 0.00 46.38 2.44
298 299 2.415426 GCTACGGCTCTCTCTGCC 59.585 66.667 0.00 0.00 46.42 4.85
299 300 2.415426 GGCTACGGCTCTCTCTGC 59.585 66.667 0.00 0.00 38.73 4.26
300 301 3.124686 GGGCTACGGCTCTCTCTG 58.875 66.667 0.00 0.00 35.73 3.35
306 307 2.202756 CGTCAAGGGCTACGGCTC 60.203 66.667 0.00 0.00 39.72 4.70
307 308 4.452733 GCGTCAAGGGCTACGGCT 62.453 66.667 0.00 0.00 39.46 5.52
308 309 4.752879 TGCGTCAAGGGCTACGGC 62.753 66.667 0.00 0.00 39.46 5.68
309 310 2.509336 CTGCGTCAAGGGCTACGG 60.509 66.667 0.00 0.00 39.46 4.02
310 311 3.188786 GCTGCGTCAAGGGCTACG 61.189 66.667 0.00 0.00 41.92 3.51
311 312 2.820037 GGCTGCGTCAAGGGCTAC 60.820 66.667 0.00 0.00 0.00 3.58
312 313 4.451150 CGGCTGCGTCAAGGGCTA 62.451 66.667 0.00 0.00 0.00 3.93
328 329 3.976701 ATTGGCGGACAAGGAGGCG 62.977 63.158 1.41 0.00 43.48 5.52
329 330 2.044946 ATTGGCGGACAAGGAGGC 60.045 61.111 1.41 0.00 43.48 4.70
330 331 1.002134 ACATTGGCGGACAAGGAGG 60.002 57.895 16.08 0.56 43.24 4.30
331 332 0.321564 TCACATTGGCGGACAAGGAG 60.322 55.000 16.08 7.34 43.24 3.69
332 333 0.327924 ATCACATTGGCGGACAAGGA 59.672 50.000 16.08 6.54 43.24 3.36
333 334 0.734889 GATCACATTGGCGGACAAGG 59.265 55.000 6.70 6.70 45.84 3.61
334 335 1.742761 AGATCACATTGGCGGACAAG 58.257 50.000 1.41 0.00 43.48 3.16
335 336 2.198827 AAGATCACATTGGCGGACAA 57.801 45.000 0.00 0.00 44.54 3.18
336 337 2.083774 GAAAGATCACATTGGCGGACA 58.916 47.619 0.00 0.00 0.00 4.02
337 338 1.401905 GGAAAGATCACATTGGCGGAC 59.598 52.381 0.00 0.00 0.00 4.79
338 339 1.004161 TGGAAAGATCACATTGGCGGA 59.996 47.619 0.00 0.00 0.00 5.54
339 340 1.462616 TGGAAAGATCACATTGGCGG 58.537 50.000 0.00 0.00 0.00 6.13
340 341 2.033801 GGATGGAAAGATCACATTGGCG 59.966 50.000 0.00 0.00 0.00 5.69
341 342 2.033801 CGGATGGAAAGATCACATTGGC 59.966 50.000 0.00 0.00 0.00 4.52
342 343 3.282021 ACGGATGGAAAGATCACATTGG 58.718 45.455 0.00 0.00 0.00 3.16
343 344 5.220854 GGTTACGGATGGAAAGATCACATTG 60.221 44.000 0.00 0.00 0.00 2.82
344 345 4.881850 GGTTACGGATGGAAAGATCACATT 59.118 41.667 0.00 0.00 0.00 2.71
345 346 4.451900 GGTTACGGATGGAAAGATCACAT 58.548 43.478 0.00 0.00 0.00 3.21
346 347 3.677700 CGGTTACGGATGGAAAGATCACA 60.678 47.826 0.00 0.00 36.18 3.58
347 348 2.864343 CGGTTACGGATGGAAAGATCAC 59.136 50.000 0.00 0.00 36.18 3.06
348 349 2.740580 GCGGTTACGGATGGAAAGATCA 60.741 50.000 0.00 0.00 41.36 2.92
349 350 1.865340 GCGGTTACGGATGGAAAGATC 59.135 52.381 0.00 0.00 41.36 2.75
350 351 1.485066 AGCGGTTACGGATGGAAAGAT 59.515 47.619 0.00 0.00 41.36 2.40
351 352 0.899720 AGCGGTTACGGATGGAAAGA 59.100 50.000 0.00 0.00 41.36 2.52
352 353 1.664151 GAAGCGGTTACGGATGGAAAG 59.336 52.381 0.00 0.00 41.36 2.62
353 354 1.276989 AGAAGCGGTTACGGATGGAAA 59.723 47.619 0.00 0.00 41.36 3.13
354 355 0.899720 AGAAGCGGTTACGGATGGAA 59.100 50.000 0.00 0.00 41.36 3.53
355 356 1.766494 TAGAAGCGGTTACGGATGGA 58.234 50.000 0.00 0.00 41.36 3.41
356 357 2.609737 GGATAGAAGCGGTTACGGATGG 60.610 54.545 0.00 0.00 41.36 3.51
357 358 2.673833 GGATAGAAGCGGTTACGGATG 58.326 52.381 0.00 0.00 41.36 3.51
358 359 1.268899 CGGATAGAAGCGGTTACGGAT 59.731 52.381 0.00 0.00 41.36 4.18
359 360 0.664761 CGGATAGAAGCGGTTACGGA 59.335 55.000 0.00 0.00 41.36 4.69
360 361 0.664761 TCGGATAGAAGCGGTTACGG 59.335 55.000 0.00 0.00 41.36 4.02
361 362 1.332997 AGTCGGATAGAAGCGGTTACG 59.667 52.381 0.00 0.75 44.63 3.18
362 363 2.601741 CGAGTCGGATAGAAGCGGTTAC 60.602 54.545 4.10 0.00 0.00 2.50
363 364 1.600957 CGAGTCGGATAGAAGCGGTTA 59.399 52.381 4.10 0.00 0.00 2.85
364 365 0.381089 CGAGTCGGATAGAAGCGGTT 59.619 55.000 4.10 0.00 0.00 4.44
365 366 2.023318 CGAGTCGGATAGAAGCGGT 58.977 57.895 4.10 0.00 0.00 5.68
366 367 1.370657 GCGAGTCGGATAGAAGCGG 60.371 63.158 15.52 0.00 0.00 5.52
367 368 1.370657 GGCGAGTCGGATAGAAGCG 60.371 63.158 15.52 0.00 0.00 4.68
368 369 0.315568 ATGGCGAGTCGGATAGAAGC 59.684 55.000 15.52 0.00 0.00 3.86
369 370 1.883275 AGATGGCGAGTCGGATAGAAG 59.117 52.381 15.52 0.00 0.00 2.85
370 371 1.880675 GAGATGGCGAGTCGGATAGAA 59.119 52.381 15.52 0.00 0.00 2.10
371 372 1.524848 GAGATGGCGAGTCGGATAGA 58.475 55.000 15.52 0.00 0.00 1.98
372 373 0.523966 GGAGATGGCGAGTCGGATAG 59.476 60.000 15.52 0.00 0.00 2.08
373 374 1.235281 CGGAGATGGCGAGTCGGATA 61.235 60.000 15.52 0.00 0.00 2.59
374 375 2.556459 CGGAGATGGCGAGTCGGAT 61.556 63.158 15.52 0.00 0.00 4.18
375 376 3.209812 CGGAGATGGCGAGTCGGA 61.210 66.667 15.52 0.00 0.00 4.55
376 377 4.933064 GCGGAGATGGCGAGTCGG 62.933 72.222 15.52 0.00 0.00 4.79
377 378 4.933064 GGCGGAGATGGCGAGTCG 62.933 72.222 8.54 8.54 0.00 4.18
378 379 2.650813 AATGGCGGAGATGGCGAGTC 62.651 60.000 0.00 0.00 37.19 3.36
379 380 2.735772 AATGGCGGAGATGGCGAGT 61.736 57.895 0.00 0.00 37.19 4.18
380 381 2.109799 AATGGCGGAGATGGCGAG 59.890 61.111 0.00 0.00 37.19 5.03
381 382 2.203056 CAATGGCGGAGATGGCGA 60.203 61.111 0.00 0.00 37.19 5.54
382 383 3.282157 CCAATGGCGGAGATGGCG 61.282 66.667 0.00 0.00 37.19 5.69
404 405 4.120755 CTTCCTCTGGCAGGGGGC 62.121 72.222 32.48 0.00 43.67 5.80
405 406 3.415087 CCTTCCTCTGGCAGGGGG 61.415 72.222 32.48 23.89 43.67 5.40
411 412 0.889186 TGTTTTCGCCTTCCTCTGGC 60.889 55.000 0.00 0.00 46.42 4.85
412 413 1.604604 TTGTTTTCGCCTTCCTCTGG 58.395 50.000 0.00 0.00 0.00 3.86
413 414 2.162408 GGATTGTTTTCGCCTTCCTCTG 59.838 50.000 0.00 0.00 0.00 3.35
414 415 2.437413 GGATTGTTTTCGCCTTCCTCT 58.563 47.619 0.00 0.00 0.00 3.69
415 416 1.130561 CGGATTGTTTTCGCCTTCCTC 59.869 52.381 0.00 0.00 0.00 3.71
416 417 1.165270 CGGATTGTTTTCGCCTTCCT 58.835 50.000 0.00 0.00 0.00 3.36
417 418 0.170339 CCGGATTGTTTTCGCCTTCC 59.830 55.000 0.00 0.00 0.00 3.46
418 419 0.879090 ACCGGATTGTTTTCGCCTTC 59.121 50.000 9.46 0.00 0.00 3.46
419 420 0.879090 GACCGGATTGTTTTCGCCTT 59.121 50.000 9.46 0.00 0.00 4.35
420 421 0.036306 AGACCGGATTGTTTTCGCCT 59.964 50.000 9.46 0.00 0.00 5.52
421 422 0.168128 CAGACCGGATTGTTTTCGCC 59.832 55.000 9.46 0.00 0.00 5.54
422 423 0.454452 GCAGACCGGATTGTTTTCGC 60.454 55.000 9.46 0.00 0.00 4.70
423 424 0.871722 TGCAGACCGGATTGTTTTCG 59.128 50.000 9.46 0.00 0.00 3.46
424 425 1.401539 GCTGCAGACCGGATTGTTTTC 60.402 52.381 20.43 0.00 0.00 2.29
425 426 0.598065 GCTGCAGACCGGATTGTTTT 59.402 50.000 20.43 0.00 0.00 2.43
426 427 1.577328 CGCTGCAGACCGGATTGTTT 61.577 55.000 20.43 0.00 0.00 2.83
427 428 2.034879 CGCTGCAGACCGGATTGTT 61.035 57.895 20.43 0.00 0.00 2.83
428 429 2.434884 CGCTGCAGACCGGATTGT 60.435 61.111 20.43 0.00 0.00 2.71
951 952 1.067516 GCAGCACTGATCTCTCTCTCC 59.932 57.143 0.81 0.00 0.00 3.71
952 953 2.026641 AGCAGCACTGATCTCTCTCTC 58.973 52.381 0.81 0.00 0.00 3.20
953 954 2.148446 AGCAGCACTGATCTCTCTCT 57.852 50.000 0.81 0.00 0.00 3.10
954 955 3.858129 GCATAGCAGCACTGATCTCTCTC 60.858 52.174 0.81 0.00 0.00 3.20
955 956 2.036217 GCATAGCAGCACTGATCTCTCT 59.964 50.000 0.81 0.00 0.00 3.10
956 957 2.223994 TGCATAGCAGCACTGATCTCTC 60.224 50.000 0.81 0.00 40.11 3.20
957 958 1.761198 TGCATAGCAGCACTGATCTCT 59.239 47.619 0.81 0.00 40.11 3.10
958 959 2.235845 TGCATAGCAGCACTGATCTC 57.764 50.000 0.81 0.00 40.11 2.75
959 960 2.704464 TTGCATAGCAGCACTGATCT 57.296 45.000 0.81 0.00 45.61 2.75
960 961 2.681848 ACTTTGCATAGCAGCACTGATC 59.318 45.455 3.86 0.00 45.61 2.92
961 962 2.719739 ACTTTGCATAGCAGCACTGAT 58.280 42.857 3.86 0.00 45.61 2.90
962 963 2.189594 ACTTTGCATAGCAGCACTGA 57.810 45.000 3.86 0.00 45.61 3.41
963 964 3.240069 GAAACTTTGCATAGCAGCACTG 58.760 45.455 3.86 0.00 45.61 3.66
964 965 2.095567 CGAAACTTTGCATAGCAGCACT 60.096 45.455 3.86 0.00 45.61 4.40
965 966 2.245096 CGAAACTTTGCATAGCAGCAC 58.755 47.619 3.86 0.00 45.61 4.40
966 967 1.879380 ACGAAACTTTGCATAGCAGCA 59.121 42.857 3.86 0.00 40.61 4.41
967 968 2.619013 ACGAAACTTTGCATAGCAGC 57.381 45.000 3.86 0.00 40.61 5.25
968 969 3.659735 CGTACGAAACTTTGCATAGCAG 58.340 45.455 10.44 0.00 40.61 4.24
969 970 2.159761 GCGTACGAAACTTTGCATAGCA 60.160 45.455 21.65 0.00 36.47 3.49
970 971 2.159761 TGCGTACGAAACTTTGCATAGC 60.160 45.455 21.65 0.00 0.00 2.97
971 972 3.366724 TCTGCGTACGAAACTTTGCATAG 59.633 43.478 21.65 2.27 0.00 2.23
972 973 3.318886 TCTGCGTACGAAACTTTGCATA 58.681 40.909 21.65 0.00 0.00 3.14
973 974 2.139917 TCTGCGTACGAAACTTTGCAT 58.860 42.857 21.65 0.00 0.00 3.96
974 975 1.525197 CTCTGCGTACGAAACTTTGCA 59.475 47.619 21.65 3.37 0.00 4.08
975 976 1.525619 ACTCTGCGTACGAAACTTTGC 59.474 47.619 21.65 0.00 0.00 3.68
976 977 3.979495 ACTACTCTGCGTACGAAACTTTG 59.021 43.478 21.65 6.06 0.00 2.77
977 978 4.234530 ACTACTCTGCGTACGAAACTTT 57.765 40.909 21.65 0.00 0.00 2.66
978 979 3.911661 ACTACTCTGCGTACGAAACTT 57.088 42.857 21.65 1.69 0.00 2.66
979 980 3.365767 GGAACTACTCTGCGTACGAAACT 60.366 47.826 21.65 0.00 0.00 2.66
980 981 2.913590 GGAACTACTCTGCGTACGAAAC 59.086 50.000 21.65 1.31 0.00 2.78
981 982 2.413239 CGGAACTACTCTGCGTACGAAA 60.413 50.000 21.65 5.07 0.00 3.46
982 983 1.129251 CGGAACTACTCTGCGTACGAA 59.871 52.381 21.65 7.90 0.00 3.85
983 984 0.723414 CGGAACTACTCTGCGTACGA 59.277 55.000 21.65 3.19 0.00 3.43
984 985 0.860618 GCGGAACTACTCTGCGTACG 60.861 60.000 11.84 11.84 46.37 3.67
985 986 2.941163 GCGGAACTACTCTGCGTAC 58.059 57.895 0.00 0.00 46.37 3.67
990 991 1.795768 TGCAAAGCGGAACTACTCTG 58.204 50.000 0.00 0.00 0.00 3.35
991 992 2.543777 TTGCAAAGCGGAACTACTCT 57.456 45.000 0.00 0.00 0.00 3.24
992 993 3.619233 TTTTGCAAAGCGGAACTACTC 57.381 42.857 12.41 0.00 0.00 2.59
993 994 4.546570 GATTTTTGCAAAGCGGAACTACT 58.453 39.130 12.41 0.00 0.00 2.57
1034 1036 6.208599 AGACGCCAATGATTTCCTTCTTTTTA 59.791 34.615 0.00 0.00 0.00 1.52
1101 1103 4.659172 CCAGGGCGGAAGTGGCAA 62.659 66.667 0.00 0.00 36.56 4.52
1549 1551 0.732880 CAATGGCGACGTCGAACTCT 60.733 55.000 39.74 19.22 43.02 3.24
1879 1881 3.985877 TCAAGCACCTTGATGGCG 58.014 55.556 3.69 0.00 44.27 5.69
2098 2100 0.538584 CACATCCTAGCAGCAGGTGA 59.461 55.000 3.02 0.00 36.99 4.02
2243 2245 4.020485 ACCACATAGTACCTTCCAGTTGAC 60.020 45.833 0.00 0.00 0.00 3.18
2274 2276 7.294017 ACATAATGCTAGAAATTCCCCATTG 57.706 36.000 11.19 2.87 0.00 2.82
2595 2599 2.604118 TCCGGTGGGGAGAATCTTC 58.396 57.895 0.00 0.00 40.94 2.87
2596 2600 4.910613 TCCGGTGGGGAGAATCTT 57.089 55.556 0.00 0.00 40.94 2.40
2610 2615 0.876342 GGGTGAAATCGCTAGCTCCG 60.876 60.000 13.93 0.00 0.00 4.63
2931 2936 2.211353 TTGGTTAAAACAAGCACGCC 57.789 45.000 0.00 0.00 0.00 5.68
2933 2938 7.322699 CACTACTTATTGGTTAAAACAAGCACG 59.677 37.037 0.00 0.00 0.00 5.34
3023 3028 5.276868 CGCTACAATAAGTGTTACCATGCTC 60.277 44.000 0.00 0.00 41.98 4.26
3037 3042 8.887036 AACTGACATCATTATCGCTACAATAA 57.113 30.769 0.00 0.00 0.00 1.40
3042 3047 6.589830 ACAAACTGACATCATTATCGCTAC 57.410 37.500 0.00 0.00 0.00 3.58
3047 3052 5.126061 AGGGCAACAAACTGACATCATTATC 59.874 40.000 0.00 0.00 39.74 1.75
3053 3058 4.380867 CCAATAGGGCAACAAACTGACATC 60.381 45.833 0.00 0.00 39.74 3.06
3064 3069 6.064717 AGAGATAATGTTCCAATAGGGCAAC 58.935 40.000 0.00 0.00 36.21 4.17
3107 3112 4.879545 TGATAACGAAAGCCTACAAATCCC 59.120 41.667 0.00 0.00 0.00 3.85
3110 3115 8.556213 TTTACTGATAACGAAAGCCTACAAAT 57.444 30.769 0.00 0.00 0.00 2.32
3114 3119 6.592994 AGGTTTTACTGATAACGAAAGCCTAC 59.407 38.462 0.42 0.00 39.74 3.18
3115 3120 6.704310 AGGTTTTACTGATAACGAAAGCCTA 58.296 36.000 0.42 0.00 39.74 3.93
3116 3121 5.557866 AGGTTTTACTGATAACGAAAGCCT 58.442 37.500 0.00 0.00 37.58 4.58
3117 3122 5.410439 TGAGGTTTTACTGATAACGAAAGCC 59.590 40.000 0.00 0.00 33.68 4.35
3118 3123 6.367969 TCTGAGGTTTTACTGATAACGAAAGC 59.632 38.462 0.00 0.00 0.00 3.51
3119 3124 7.884816 TCTGAGGTTTTACTGATAACGAAAG 57.115 36.000 0.00 0.00 0.00 2.62
3120 3125 8.842358 AATCTGAGGTTTTACTGATAACGAAA 57.158 30.769 0.00 0.00 0.00 3.46
3121 3126 8.842358 AAATCTGAGGTTTTACTGATAACGAA 57.158 30.769 0.00 0.00 0.00 3.85
3122 3127 8.092068 TGAAATCTGAGGTTTTACTGATAACGA 58.908 33.333 0.00 0.00 0.00 3.85
3123 3128 8.251750 TGAAATCTGAGGTTTTACTGATAACG 57.748 34.615 0.00 0.00 0.00 3.18
3200 3205 7.880160 ATGCAGGCTTTAACTAACATAATCA 57.120 32.000 0.00 0.00 0.00 2.57
3201 3206 8.017946 GCTATGCAGGCTTTAACTAACATAATC 58.982 37.037 7.13 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.