Multiple sequence alignment - TraesCS6A01G219300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G219300 chr6A 100.000 2342 0 0 1 2342 406436454 406434113 0.000000e+00 4325.0
1 TraesCS6A01G219300 chr6A 88.430 605 54 5 502 1100 395313114 395313708 0.000000e+00 715.0
2 TraesCS6A01G219300 chr6A 90.654 535 37 8 1699 2222 250995643 250995111 0.000000e+00 699.0
3 TraesCS6A01G219300 chr6A 85.169 236 22 12 2114 2342 316944209 316943980 1.810000e-56 230.0
4 TraesCS6A01G219300 chr6A 88.235 68 5 2 465 532 244508560 244508496 6.940000e-11 78.7
5 TraesCS6A01G219300 chr4A 92.157 816 62 2 285 1099 200242113 200241299 0.000000e+00 1151.0
6 TraesCS6A01G219300 chr4A 91.808 708 53 3 392 1098 200249929 200249226 0.000000e+00 981.0
7 TraesCS6A01G219300 chr4A 88.670 609 56 5 502 1107 490560202 490559604 0.000000e+00 730.0
8 TraesCS6A01G219300 chr4A 89.039 593 53 4 502 1091 685935512 685936095 0.000000e+00 725.0
9 TraesCS6A01G219300 chr4A 88.825 519 54 4 1707 2222 59217778 59217261 3.280000e-178 634.0
10 TraesCS6A01G219300 chr4A 90.244 492 36 4 502 990 685855485 685855967 1.180000e-177 632.0
11 TraesCS6A01G219300 chr4A 88.632 519 54 5 1707 2222 59172975 59172459 5.490000e-176 627.0
12 TraesCS6A01G219300 chr4A 87.733 375 45 1 666 1039 258024187 258023813 9.940000e-119 436.0
13 TraesCS6A01G219300 chr4A 83.538 407 41 22 1 388 221236759 221236360 7.960000e-95 357.0
14 TraesCS6A01G219300 chr4A 79.736 454 63 22 1 439 75116614 75116175 3.780000e-78 302.0
15 TraesCS6A01G219300 chr4A 87.302 126 14 2 1082 1206 407811725 407811849 2.430000e-30 143.0
16 TraesCS6A01G219300 chr4A 88.889 90 8 2 1193 1280 279647122 279647033 2.460000e-20 110.0
17 TraesCS6A01G219300 chr5A 91.667 588 43 5 1640 2222 29419312 29419898 0.000000e+00 809.0
18 TraesCS6A01G219300 chr5A 90.240 625 44 14 1610 2222 29410172 29410791 0.000000e+00 800.0
19 TraesCS6A01G219300 chr5A 89.819 609 48 5 502 1107 36041934 36041337 0.000000e+00 769.0
20 TraesCS6A01G219300 chr5A 89.816 599 49 4 502 1097 304712422 304713011 0.000000e+00 758.0
21 TraesCS6A01G219300 chr5A 89.535 602 51 4 502 1100 108744075 108744667 0.000000e+00 752.0
22 TraesCS6A01G219300 chr5A 84.262 413 48 11 1 399 354254889 354254480 1.020000e-103 387.0
23 TraesCS6A01G219300 chr5A 83.047 407 52 11 1 393 354219737 354219334 1.030000e-93 353.0
24 TraesCS6A01G219300 chr5A 94.697 132 7 0 2211 2342 700113729 700113860 3.050000e-49 206.0
25 TraesCS6A01G219300 chr5A 89.683 126 12 1 1193 1317 378682985 378682860 2.410000e-35 159.0
26 TraesCS6A01G219300 chr5A 97.436 39 1 0 1240 1278 165845912 165845874 1.500000e-07 67.6
27 TraesCS6A01G219300 chr3A 87.024 709 63 22 1530 2222 418082536 418081841 0.000000e+00 773.0
28 TraesCS6A01G219300 chr3A 94.964 139 7 0 2204 2342 539225333 539225471 3.920000e-53 219.0
29 TraesCS6A01G219300 chr1A 90.033 602 48 4 502 1100 395584637 395585229 0.000000e+00 769.0
30 TraesCS6A01G219300 chr1A 89.535 602 51 4 502 1100 395592868 395593460 0.000000e+00 752.0
31 TraesCS6A01G219300 chr1A 90.720 528 40 8 1699 2223 226901496 226900975 0.000000e+00 695.0
32 TraesCS6A01G219300 chr1A 86.073 438 50 3 664 1100 286226880 286227307 5.900000e-126 460.0
33 TraesCS6A01G219300 chr1A 81.490 416 60 13 1 403 204317837 204318248 2.240000e-85 326.0
34 TraesCS6A01G219300 chr7A 89.491 609 50 5 502 1107 394887994 394887397 0.000000e+00 758.0
35 TraesCS6A01G219300 chr7A 88.346 532 43 14 1699 2223 233704419 233704938 2.560000e-174 621.0
36 TraesCS6A01G219300 chr2A 89.286 588 49 5 522 1107 275352940 275352365 0.000000e+00 725.0
37 TraesCS6A01G219300 chr2A 90.074 544 46 8 1692 2231 467789392 467788853 0.000000e+00 699.0
38 TraesCS6A01G219300 chr2A 82.192 438 63 13 1 426 467791036 467790602 1.710000e-96 363.0
39 TraesCS6A01G219300 chr2A 92.063 126 9 1 1193 1317 216286995 216287120 2.390000e-40 176.0
40 TraesCS6A01G219300 chr2A 90.566 106 10 0 406 511 422228013 422228118 8.730000e-30 141.0
41 TraesCS6A01G219300 chr3B 85.399 363 32 14 1 353 197556789 197557140 7.960000e-95 357.0
42 TraesCS6A01G219300 chr6B 83.679 386 42 14 1 376 264379682 264379308 6.200000e-91 344.0
43 TraesCS6A01G219300 chr2B 81.862 419 53 18 1 403 596812252 596811841 4.820000e-87 331.0
44 TraesCS6A01G219300 chrUn 98.347 121 2 0 2222 2342 925206 925326 1.820000e-51 213.0
45 TraesCS6A01G219300 chrUn 98.347 121 2 0 2222 2342 311648555 311648435 1.820000e-51 213.0
46 TraesCS6A01G219300 chrUn 98.347 121 2 0 2222 2342 331711377 331711497 1.820000e-51 213.0
47 TraesCS6A01G219300 chr1D 98.347 121 2 0 2222 2342 2274559 2274439 1.820000e-51 213.0
48 TraesCS6A01G219300 chr1D 98.347 121 2 0 2222 2342 282263040 282263160 1.820000e-51 213.0
49 TraesCS6A01G219300 chr7D 95.385 130 6 0 2213 2342 301134035 301134164 8.480000e-50 207.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G219300 chr6A 406434113 406436454 2341 True 4325 4325 100.000 1 2342 1 chr6A.!!$R4 2341
1 TraesCS6A01G219300 chr6A 395313114 395313708 594 False 715 715 88.430 502 1100 1 chr6A.!!$F1 598
2 TraesCS6A01G219300 chr6A 250995111 250995643 532 True 699 699 90.654 1699 2222 1 chr6A.!!$R2 523
3 TraesCS6A01G219300 chr4A 200241299 200242113 814 True 1151 1151 92.157 285 1099 1 chr4A.!!$R4 814
4 TraesCS6A01G219300 chr4A 200249226 200249929 703 True 981 981 91.808 392 1098 1 chr4A.!!$R5 706
5 TraesCS6A01G219300 chr4A 490559604 490560202 598 True 730 730 88.670 502 1107 1 chr4A.!!$R9 605
6 TraesCS6A01G219300 chr4A 685935512 685936095 583 False 725 725 89.039 502 1091 1 chr4A.!!$F3 589
7 TraesCS6A01G219300 chr4A 59217261 59217778 517 True 634 634 88.825 1707 2222 1 chr4A.!!$R2 515
8 TraesCS6A01G219300 chr4A 59172459 59172975 516 True 627 627 88.632 1707 2222 1 chr4A.!!$R1 515
9 TraesCS6A01G219300 chr5A 29419312 29419898 586 False 809 809 91.667 1640 2222 1 chr5A.!!$F2 582
10 TraesCS6A01G219300 chr5A 29410172 29410791 619 False 800 800 90.240 1610 2222 1 chr5A.!!$F1 612
11 TraesCS6A01G219300 chr5A 36041337 36041934 597 True 769 769 89.819 502 1107 1 chr5A.!!$R1 605
12 TraesCS6A01G219300 chr5A 304712422 304713011 589 False 758 758 89.816 502 1097 1 chr5A.!!$F4 595
13 TraesCS6A01G219300 chr5A 108744075 108744667 592 False 752 752 89.535 502 1100 1 chr5A.!!$F3 598
14 TraesCS6A01G219300 chr3A 418081841 418082536 695 True 773 773 87.024 1530 2222 1 chr3A.!!$R1 692
15 TraesCS6A01G219300 chr1A 395584637 395585229 592 False 769 769 90.033 502 1100 1 chr1A.!!$F3 598
16 TraesCS6A01G219300 chr1A 395592868 395593460 592 False 752 752 89.535 502 1100 1 chr1A.!!$F4 598
17 TraesCS6A01G219300 chr1A 226900975 226901496 521 True 695 695 90.720 1699 2223 1 chr1A.!!$R1 524
18 TraesCS6A01G219300 chr7A 394887397 394887994 597 True 758 758 89.491 502 1107 1 chr7A.!!$R1 605
19 TraesCS6A01G219300 chr7A 233704419 233704938 519 False 621 621 88.346 1699 2223 1 chr7A.!!$F1 524
20 TraesCS6A01G219300 chr2A 275352365 275352940 575 True 725 725 89.286 522 1107 1 chr2A.!!$R1 585
21 TraesCS6A01G219300 chr2A 467788853 467791036 2183 True 531 699 86.133 1 2231 2 chr2A.!!$R2 2230

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 96 0.24928 GAAACAAAAGGGGTGCCACG 60.249 55.0 0.0 0.0 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1460 1790 0.036294 CCCTCTCGTTTTCCCCTCAC 60.036 60.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 9.719279 ATGCAATTTTTGTTAAAAGTTGACATG 57.281 25.926 19.65 0.00 45.43 3.21
80 82 0.533085 TTGTCATCGTGGCGGAAACA 60.533 50.000 0.00 0.00 0.00 2.83
94 96 0.249280 GAAACAAAAGGGGTGCCACG 60.249 55.000 0.00 0.00 0.00 4.94
95 97 0.684805 AAACAAAAGGGGTGCCACGA 60.685 50.000 0.00 0.00 0.00 4.35
107 115 1.209127 GCCACGACAACGGAAATGG 59.791 57.895 0.00 0.00 44.46 3.16
110 118 0.385473 CACGACAACGGAAATGGTGC 60.385 55.000 0.00 0.00 44.46 5.01
132 140 1.673009 GGCAACATTCCGGTTCCGA 60.673 57.895 13.08 0.00 0.00 4.55
135 143 2.011222 GCAACATTCCGGTTCCGATAA 58.989 47.619 13.08 7.08 0.00 1.75
139 147 2.124903 CATTCCGGTTCCGATAACTCG 58.875 52.381 13.08 0.00 44.62 4.18
161 169 2.542020 TGAGATGTCGGTGCAAAAGA 57.458 45.000 0.00 0.00 0.00 2.52
164 172 3.250762 TGAGATGTCGGTGCAAAAGAAAG 59.749 43.478 0.00 0.00 0.00 2.62
165 173 2.554032 AGATGTCGGTGCAAAAGAAAGG 59.446 45.455 0.00 0.00 0.00 3.11
167 175 0.318699 GTCGGTGCAAAAGAAAGGGC 60.319 55.000 0.00 0.00 0.00 5.19
170 178 0.387565 GGTGCAAAAGAAAGGGCGAA 59.612 50.000 0.00 0.00 0.00 4.70
172 180 1.336755 GTGCAAAAGAAAGGGCGAAGA 59.663 47.619 0.00 0.00 0.00 2.87
173 181 1.608590 TGCAAAAGAAAGGGCGAAGAG 59.391 47.619 0.00 0.00 0.00 2.85
175 183 2.095516 GCAAAAGAAAGGGCGAAGAGAG 60.096 50.000 0.00 0.00 0.00 3.20
176 184 3.142174 CAAAAGAAAGGGCGAAGAGAGT 58.858 45.455 0.00 0.00 0.00 3.24
177 185 2.753055 AAGAAAGGGCGAAGAGAGTC 57.247 50.000 0.00 0.00 0.00 3.36
178 186 1.633774 AGAAAGGGCGAAGAGAGTCA 58.366 50.000 0.00 0.00 0.00 3.41
179 187 1.273886 AGAAAGGGCGAAGAGAGTCAC 59.726 52.381 0.00 0.00 0.00 3.67
197 209 2.763215 GCAAGGATGGTGGGGTGA 59.237 61.111 0.00 0.00 0.00 4.02
221 233 0.833287 AGATTCCGAGTGTCCCATGG 59.167 55.000 4.14 4.14 0.00 3.66
224 236 1.131303 TTCCGAGTGTCCCATGGGTT 61.131 55.000 30.28 14.42 36.47 4.11
225 237 1.078426 CCGAGTGTCCCATGGGTTC 60.078 63.158 30.28 22.91 36.47 3.62
227 239 1.745489 GAGTGTCCCATGGGTTCGC 60.745 63.158 30.28 26.59 36.47 4.70
238 250 2.744709 GGTTCGCGGCAAGGCTAA 60.745 61.111 6.13 0.00 0.00 3.09
239 251 2.112815 GGTTCGCGGCAAGGCTAAT 61.113 57.895 6.13 0.00 0.00 1.73
244 256 1.153168 GCGGCAAGGCTAATGAGGA 60.153 57.895 0.00 0.00 0.00 3.71
252 264 1.003118 AGGCTAATGAGGAACGTGCAA 59.997 47.619 0.00 0.00 0.00 4.08
254 266 1.398390 GCTAATGAGGAACGTGCAAGG 59.602 52.381 4.26 0.00 0.00 3.61
256 268 2.496899 AATGAGGAACGTGCAAGGAT 57.503 45.000 4.26 0.00 0.00 3.24
260 272 2.290260 TGAGGAACGTGCAAGGATCAAT 60.290 45.455 4.26 0.00 0.00 2.57
261 273 2.749621 GAGGAACGTGCAAGGATCAATT 59.250 45.455 4.26 0.00 0.00 2.32
265 277 1.338674 ACGTGCAAGGATCAATTCGGA 60.339 47.619 4.26 0.00 0.00 4.55
268 280 2.684881 GTGCAAGGATCAATTCGGACAT 59.315 45.455 0.00 0.00 0.00 3.06
276 288 1.811965 TCAATTCGGACATGGTGCAAG 59.188 47.619 0.00 0.00 0.00 4.01
347 359 4.877823 TCTCGACGTTATACCTTAGAAGCA 59.122 41.667 0.00 0.00 0.00 3.91
386 398 1.602851 CGAGTTCGACGGGATGTAGAT 59.397 52.381 0.00 0.00 43.02 1.98
456 496 1.299850 TCGCACACGAGTCTTGTGG 60.300 57.895 25.83 17.56 45.12 4.17
520 560 0.325933 TTCAGGGTCGTCGGTAGAGA 59.674 55.000 0.00 0.00 0.00 3.10
532 572 2.099756 TCGGTAGAGATACTCGTGACGA 59.900 50.000 7.70 7.70 35.36 4.20
610 651 1.000739 ATGGTCGGGGTCGGTAGAA 59.999 57.895 0.00 0.00 36.95 2.10
693 734 0.729116 CGACGGTAGATGTACACGGT 59.271 55.000 0.00 0.00 31.12 4.83
734 775 2.095919 GTCAATTGTCGTGGTACTTGGC 60.096 50.000 5.13 0.00 0.00 4.52
810 852 6.192234 ACATAGAGTAGTTGTACTTGACGG 57.808 41.667 0.00 0.00 39.78 4.79
813 855 4.139786 AGAGTAGTTGTACTTGACGGTCA 58.860 43.478 6.76 6.76 39.78 4.02
815 857 4.806330 AGTAGTTGTACTTGACGGTCATG 58.194 43.478 19.08 19.08 35.88 3.07
816 858 4.521639 AGTAGTTGTACTTGACGGTCATGA 59.478 41.667 25.31 6.68 35.88 3.07
817 859 4.537135 AGTTGTACTTGACGGTCATGAT 57.463 40.909 25.31 14.38 0.00 2.45
991 1198 0.251341 GGAGGAAGAGCTTGGGCAAA 60.251 55.000 0.00 0.00 41.70 3.68
1039 1246 1.278985 TGGATGATGAAGCAACGGTCT 59.721 47.619 0.00 0.00 0.00 3.85
1093 1300 2.997897 GTGGAGGTCAGAGGGCGT 60.998 66.667 0.00 0.00 0.00 5.68
1114 1321 4.509737 GGTACGCTGAGGACGGCC 62.510 72.222 0.00 0.00 44.72 6.13
1115 1322 4.849329 GTACGCTGAGGACGGCCG 62.849 72.222 26.86 26.86 44.72 6.13
1135 1342 4.899239 GAGGCATGGCGGTCGAGG 62.899 72.222 14.30 0.00 0.00 4.63
1144 1351 3.744719 CGGTCGAGGTCGCCAAGA 61.745 66.667 11.59 0.00 39.60 3.02
1145 1352 2.654877 GGTCGAGGTCGCCAAGAA 59.345 61.111 7.65 0.00 39.60 2.52
1146 1353 1.005394 GGTCGAGGTCGCCAAGAAA 60.005 57.895 7.65 0.00 39.60 2.52
1147 1354 1.014564 GGTCGAGGTCGCCAAGAAAG 61.015 60.000 7.65 0.00 39.60 2.62
1148 1355 1.014564 GTCGAGGTCGCCAAGAAAGG 61.015 60.000 0.00 0.00 39.60 3.11
1149 1356 1.741770 CGAGGTCGCCAAGAAAGGG 60.742 63.158 0.00 0.00 0.00 3.95
1150 1357 1.677552 GAGGTCGCCAAGAAAGGGA 59.322 57.895 0.00 0.00 0.00 4.20
1151 1358 0.391793 GAGGTCGCCAAGAAAGGGAG 60.392 60.000 0.00 0.00 0.00 4.30
1161 1368 3.651980 GAAAGGGAGGCAGCAGGGG 62.652 68.421 0.00 0.00 0.00 4.79
1184 1391 3.957535 CGATGCGGATGGCCTTGC 61.958 66.667 3.32 1.08 42.61 4.01
1185 1392 3.957535 GATGCGGATGGCCTTGCG 61.958 66.667 25.32 25.32 42.61 4.85
1238 1445 4.115199 GGCCGGGGTGCAGAAGAT 62.115 66.667 2.18 0.00 0.00 2.40
1241 1448 2.825836 CGGGGTGCAGAAGATGGC 60.826 66.667 0.00 0.00 0.00 4.40
1242 1449 2.825836 GGGGTGCAGAAGATGGCG 60.826 66.667 0.00 0.00 0.00 5.69
1243 1450 2.268920 GGGTGCAGAAGATGGCGA 59.731 61.111 0.00 0.00 0.00 5.54
1248 1455 0.179065 TGCAGAAGATGGCGATGAGG 60.179 55.000 0.00 0.00 0.00 3.86
1251 1458 1.685517 CAGAAGATGGCGATGAGGAGA 59.314 52.381 0.00 0.00 0.00 3.71
1265 1472 1.756538 GAGGAGAAGCAAGAGGAGAGG 59.243 57.143 0.00 0.00 0.00 3.69
1266 1473 0.177836 GGAGAAGCAAGAGGAGAGGC 59.822 60.000 0.00 0.00 0.00 4.70
1267 1474 0.901124 GAGAAGCAAGAGGAGAGGCA 59.099 55.000 0.00 0.00 0.00 4.75
1269 1476 0.744057 GAAGCAAGAGGAGAGGCAGC 60.744 60.000 0.00 0.00 0.00 5.25
1270 1477 2.511145 GCAAGAGGAGAGGCAGCG 60.511 66.667 0.00 0.00 0.00 5.18
1271 1478 2.511145 CAAGAGGAGAGGCAGCGC 60.511 66.667 0.00 0.00 0.00 5.92
1272 1479 2.999648 AAGAGGAGAGGCAGCGCA 61.000 61.111 11.47 0.00 0.00 6.09
1273 1480 3.016541 AAGAGGAGAGGCAGCGCAG 62.017 63.158 11.47 1.31 0.00 5.18
1274 1481 4.527583 GAGGAGAGGCAGCGCAGG 62.528 72.222 11.47 1.51 0.00 4.85
1305 1537 4.554363 CGTCCTAGCGAGGCACGG 62.554 72.222 21.36 9.64 43.40 4.94
1318 1627 4.742201 CACGGTGCGGAGGAGGTG 62.742 72.222 0.00 0.00 0.00 4.00
1319 1628 4.988716 ACGGTGCGGAGGAGGTGA 62.989 66.667 0.00 0.00 0.00 4.02
1320 1629 3.461773 CGGTGCGGAGGAGGTGAT 61.462 66.667 0.00 0.00 0.00 3.06
1321 1630 2.187946 GGTGCGGAGGAGGTGATG 59.812 66.667 0.00 0.00 0.00 3.07
1327 1636 1.690633 GGAGGAGGTGATGGGCAGA 60.691 63.158 0.00 0.00 0.00 4.26
1329 1638 0.689080 GAGGAGGTGATGGGCAGAGA 60.689 60.000 0.00 0.00 0.00 3.10
1330 1639 0.980231 AGGAGGTGATGGGCAGAGAC 60.980 60.000 0.00 0.00 0.00 3.36
1336 1645 3.391665 GATGGGCAGAGACGGGTGG 62.392 68.421 0.00 0.00 0.00 4.61
1339 1648 3.083997 GGCAGAGACGGGTGGGAT 61.084 66.667 0.00 0.00 0.00 3.85
1340 1649 2.187946 GCAGAGACGGGTGGGATG 59.812 66.667 0.00 0.00 0.00 3.51
1341 1650 2.359169 GCAGAGACGGGTGGGATGA 61.359 63.158 0.00 0.00 0.00 2.92
1342 1651 1.819229 CAGAGACGGGTGGGATGAG 59.181 63.158 0.00 0.00 0.00 2.90
1343 1652 1.381872 AGAGACGGGTGGGATGAGG 60.382 63.158 0.00 0.00 0.00 3.86
1345 1654 2.365105 GACGGGTGGGATGAGGGA 60.365 66.667 0.00 0.00 0.00 4.20
1347 1656 3.866582 CGGGTGGGATGAGGGAGC 61.867 72.222 0.00 0.00 0.00 4.70
1348 1657 3.493303 GGGTGGGATGAGGGAGCC 61.493 72.222 0.00 0.00 0.00 4.70
1349 1658 2.692368 GGTGGGATGAGGGAGCCA 60.692 66.667 0.00 0.00 0.00 4.75
1351 1660 1.150081 GTGGGATGAGGGAGCCATG 59.850 63.158 0.00 0.00 0.00 3.66
1354 1663 1.771746 GGATGAGGGAGCCATGGGA 60.772 63.158 15.13 0.00 0.00 4.37
1387 1717 2.747686 GGCACGAGGTGGAGGAAA 59.252 61.111 0.00 0.00 33.64 3.13
1388 1718 1.376037 GGCACGAGGTGGAGGAAAG 60.376 63.158 0.00 0.00 33.64 2.62
1389 1719 1.376037 GCACGAGGTGGAGGAAAGG 60.376 63.158 0.00 0.00 33.64 3.11
1392 1722 0.905337 ACGAGGTGGAGGAAAGGAGG 60.905 60.000 0.00 0.00 0.00 4.30
1396 1726 0.252742 GGTGGAGGAAAGGAGGAGGA 60.253 60.000 0.00 0.00 0.00 3.71
1397 1727 1.199615 GTGGAGGAAAGGAGGAGGAG 58.800 60.000 0.00 0.00 0.00 3.69
1399 1729 0.043485 GGAGGAAAGGAGGAGGAGGT 59.957 60.000 0.00 0.00 0.00 3.85
1402 1732 1.331399 GGAAAGGAGGAGGAGGTCGG 61.331 65.000 0.00 0.00 0.00 4.79
1403 1733 1.306226 AAAGGAGGAGGAGGTCGGG 60.306 63.158 0.00 0.00 0.00 5.14
1404 1734 3.986116 AAGGAGGAGGAGGTCGGGC 62.986 68.421 0.00 0.00 0.00 6.13
1409 1739 4.162690 GAGGAGGTCGGGCGCAAT 62.163 66.667 10.83 0.00 0.00 3.56
1410 1740 4.473520 AGGAGGTCGGGCGCAATG 62.474 66.667 10.83 0.00 0.00 2.82
1411 1741 4.467084 GGAGGTCGGGCGCAATGA 62.467 66.667 10.83 0.00 0.00 2.57
1412 1742 2.892425 GAGGTCGGGCGCAATGAG 60.892 66.667 10.83 0.00 0.00 2.90
1413 1743 4.473520 AGGTCGGGCGCAATGAGG 62.474 66.667 10.83 0.00 0.00 3.86
1414 1744 4.467084 GGTCGGGCGCAATGAGGA 62.467 66.667 10.83 0.00 0.00 3.71
1415 1745 2.435938 GTCGGGCGCAATGAGGAA 60.436 61.111 10.83 0.00 0.00 3.36
1416 1746 2.125147 TCGGGCGCAATGAGGAAG 60.125 61.111 10.83 0.00 0.00 3.46
1417 1747 2.125147 CGGGCGCAATGAGGAAGA 60.125 61.111 10.83 0.00 0.00 2.87
1418 1748 2.176273 CGGGCGCAATGAGGAAGAG 61.176 63.158 10.83 0.00 0.00 2.85
1419 1749 1.821332 GGGCGCAATGAGGAAGAGG 60.821 63.158 10.83 0.00 0.00 3.69
1420 1750 1.221840 GGCGCAATGAGGAAGAGGA 59.778 57.895 10.83 0.00 0.00 3.71
1421 1751 0.813210 GGCGCAATGAGGAAGAGGAG 60.813 60.000 10.83 0.00 0.00 3.69
1422 1752 0.813210 GCGCAATGAGGAAGAGGAGG 60.813 60.000 0.30 0.00 0.00 4.30
1423 1753 0.179062 CGCAATGAGGAAGAGGAGGG 60.179 60.000 0.00 0.00 0.00 4.30
1424 1754 0.182299 GCAATGAGGAAGAGGAGGGG 59.818 60.000 0.00 0.00 0.00 4.79
1425 1755 1.885049 CAATGAGGAAGAGGAGGGGA 58.115 55.000 0.00 0.00 0.00 4.81
1426 1756 2.416638 CAATGAGGAAGAGGAGGGGAT 58.583 52.381 0.00 0.00 0.00 3.85
1427 1757 2.371510 CAATGAGGAAGAGGAGGGGATC 59.628 54.545 0.00 0.00 0.00 3.36
1428 1758 0.105964 TGAGGAAGAGGAGGGGATCG 60.106 60.000 0.00 0.00 0.00 3.69
1429 1759 0.186386 GAGGAAGAGGAGGGGATCGA 59.814 60.000 0.00 0.00 0.00 3.59
1430 1760 0.187361 AGGAAGAGGAGGGGATCGAG 59.813 60.000 0.00 0.00 0.00 4.04
1431 1761 1.468506 GGAAGAGGAGGGGATCGAGC 61.469 65.000 0.00 0.00 0.00 5.03
1432 1762 1.801309 GAAGAGGAGGGGATCGAGCG 61.801 65.000 0.00 0.00 0.00 5.03
1433 1763 2.203365 GAGGAGGGGATCGAGCGA 60.203 66.667 0.00 0.00 0.00 4.93
1434 1764 2.203422 AGGAGGGGATCGAGCGAG 60.203 66.667 0.00 0.00 0.00 5.03
1435 1765 3.299190 GGAGGGGATCGAGCGAGG 61.299 72.222 0.00 0.00 0.00 4.63
1436 1766 3.984749 GAGGGGATCGAGCGAGGC 61.985 72.222 0.00 0.00 0.00 4.70
1437 1767 4.841617 AGGGGATCGAGCGAGGCA 62.842 66.667 0.00 0.00 0.00 4.75
1438 1768 4.292178 GGGGATCGAGCGAGGCAG 62.292 72.222 0.00 0.00 0.00 4.85
1439 1769 4.959596 GGGATCGAGCGAGGCAGC 62.960 72.222 0.00 0.00 37.41 5.25
1464 1794 4.803426 GTCTCCTGGCGGCGTGAG 62.803 72.222 17.97 17.97 0.00 3.51
1472 1802 3.733960 GCGGCGTGAGGGGAAAAC 61.734 66.667 9.37 0.00 0.00 2.43
1473 1803 3.419759 CGGCGTGAGGGGAAAACG 61.420 66.667 0.00 0.00 40.22 3.60
1474 1804 2.031465 GGCGTGAGGGGAAAACGA 59.969 61.111 0.00 0.00 39.64 3.85
1475 1805 2.033194 GGCGTGAGGGGAAAACGAG 61.033 63.158 0.00 0.00 39.64 4.18
1476 1806 1.005394 GCGTGAGGGGAAAACGAGA 60.005 57.895 0.00 0.00 39.64 4.04
1477 1807 1.014564 GCGTGAGGGGAAAACGAGAG 61.015 60.000 0.00 0.00 39.64 3.20
1478 1808 0.389948 CGTGAGGGGAAAACGAGAGG 60.390 60.000 0.00 0.00 39.64 3.69
1479 1809 0.036294 GTGAGGGGAAAACGAGAGGG 60.036 60.000 0.00 0.00 0.00 4.30
1480 1810 0.178915 TGAGGGGAAAACGAGAGGGA 60.179 55.000 0.00 0.00 0.00 4.20
1481 1811 0.537653 GAGGGGAAAACGAGAGGGAG 59.462 60.000 0.00 0.00 0.00 4.30
1482 1812 0.116541 AGGGGAAAACGAGAGGGAGA 59.883 55.000 0.00 0.00 0.00 3.71
1483 1813 0.537653 GGGGAAAACGAGAGGGAGAG 59.462 60.000 0.00 0.00 0.00 3.20
1484 1814 0.537653 GGGAAAACGAGAGGGAGAGG 59.462 60.000 0.00 0.00 0.00 3.69
1485 1815 1.558233 GGAAAACGAGAGGGAGAGGA 58.442 55.000 0.00 0.00 0.00 3.71
1487 1817 1.478916 GAAAACGAGAGGGAGAGGAGG 59.521 57.143 0.00 0.00 0.00 4.30
1490 1820 2.387772 CGAGAGGGAGAGGAGGGGA 61.388 68.421 0.00 0.00 0.00 4.81
1498 1828 3.237741 GAGGAGGGGATCGGGCAG 61.238 72.222 0.00 0.00 0.00 4.85
1504 1834 4.880426 GGGATCGGGCAGGGGAGA 62.880 72.222 0.00 0.00 0.00 3.71
1510 1840 2.042261 GGGCAGGGGAGAGGGTTA 59.958 66.667 0.00 0.00 0.00 2.85
1511 1841 2.073101 GGGCAGGGGAGAGGGTTAG 61.073 68.421 0.00 0.00 0.00 2.34
1512 1842 2.073101 GGCAGGGGAGAGGGTTAGG 61.073 68.421 0.00 0.00 0.00 2.69
1513 1843 2.073101 GCAGGGGAGAGGGTTAGGG 61.073 68.421 0.00 0.00 0.00 3.53
1514 1844 1.396594 CAGGGGAGAGGGTTAGGGT 59.603 63.158 0.00 0.00 0.00 4.34
1515 1845 0.253207 CAGGGGAGAGGGTTAGGGTT 60.253 60.000 0.00 0.00 0.00 4.11
1516 1846 1.009183 CAGGGGAGAGGGTTAGGGTTA 59.991 57.143 0.00 0.00 0.00 2.85
1517 1847 1.294373 AGGGGAGAGGGTTAGGGTTAG 59.706 57.143 0.00 0.00 0.00 2.34
1518 1848 1.695016 GGGGAGAGGGTTAGGGTTAGG 60.695 61.905 0.00 0.00 0.00 2.69
1519 1849 1.009306 GGGAGAGGGTTAGGGTTAGGT 59.991 57.143 0.00 0.00 0.00 3.08
1520 1850 2.117051 GGAGAGGGTTAGGGTTAGGTG 58.883 57.143 0.00 0.00 0.00 4.00
1521 1851 2.117051 GAGAGGGTTAGGGTTAGGTGG 58.883 57.143 0.00 0.00 0.00 4.61
1522 1852 1.210538 GAGGGTTAGGGTTAGGTGGG 58.789 60.000 0.00 0.00 0.00 4.61
1523 1853 0.801574 AGGGTTAGGGTTAGGTGGGA 59.198 55.000 0.00 0.00 0.00 4.37
1524 1854 1.210538 GGGTTAGGGTTAGGTGGGAG 58.789 60.000 0.00 0.00 0.00 4.30
1525 1855 1.556475 GGGTTAGGGTTAGGTGGGAGT 60.556 57.143 0.00 0.00 0.00 3.85
1526 1856 1.558294 GGTTAGGGTTAGGTGGGAGTG 59.442 57.143 0.00 0.00 0.00 3.51
1527 1857 1.558294 GTTAGGGTTAGGTGGGAGTGG 59.442 57.143 0.00 0.00 0.00 4.00
1528 1858 0.043637 TAGGGTTAGGTGGGAGTGGG 59.956 60.000 0.00 0.00 0.00 4.61
1567 1897 3.301554 CGGTGCAAATGGGCCACA 61.302 61.111 9.28 0.00 0.00 4.17
1577 1907 1.639635 ATGGGCCACAGAGATGACCC 61.640 60.000 9.28 0.00 37.88 4.46
1578 1908 2.300967 GGGCCACAGAGATGACCCA 61.301 63.158 4.39 0.00 37.30 4.51
1581 1911 1.908340 GCCACAGAGATGACCCAGCT 61.908 60.000 0.00 0.00 30.65 4.24
1582 1912 0.177604 CCACAGAGATGACCCAGCTC 59.822 60.000 4.23 4.23 45.85 4.09
1597 1927 4.441695 CTCGGCTGCGGAGAAGCA 62.442 66.667 27.22 0.00 45.96 3.91
1634 2148 2.788807 TGGGCTCTCTCTCTCTCCTTAT 59.211 50.000 0.00 0.00 0.00 1.73
1635 2149 3.206412 TGGGCTCTCTCTCTCTCCTTATT 59.794 47.826 0.00 0.00 0.00 1.40
1638 2152 5.221441 GGGCTCTCTCTCTCTCCTTATTTTC 60.221 48.000 0.00 0.00 0.00 2.29
1644 2158 7.341769 TCTCTCTCTCTCCTTATTTTCTCCTTG 59.658 40.741 0.00 0.00 0.00 3.61
1717 2235 9.799106 AGAAAAGGATAGAGAAAGAATTTGTGA 57.201 29.630 0.00 0.00 39.27 3.58
1722 2240 8.386264 AGGATAGAGAAAGAATTTGTGAAGGAA 58.614 33.333 0.00 0.00 39.27 3.36
1729 2247 6.916360 AAGAATTTGTGAAGGAAGCCAATA 57.084 33.333 0.00 0.00 0.00 1.90
1731 2249 7.105241 AGAATTTGTGAAGGAAGCCAATATC 57.895 36.000 0.00 0.00 0.00 1.63
1742 2263 1.625818 AGCCAATATCCTCGGATCACC 59.374 52.381 0.86 0.00 36.17 4.02
1757 2278 5.887598 TCGGATCACCAAAATGAGATTGATT 59.112 36.000 0.00 0.00 35.59 2.57
1760 2281 7.201145 GGATCACCAAAATGAGATTGATTCAG 58.799 38.462 0.00 0.00 35.97 3.02
1769 2291 9.793252 AAAATGAGATTGATTCAGGAAAATACG 57.207 29.630 0.00 0.00 0.00 3.06
1912 2440 4.156455 ACGATGACAGAAATTATGGGCT 57.844 40.909 0.00 0.00 0.00 5.19
1925 2453 4.919774 TTATGGGCTAAGTTTGAGGACA 57.080 40.909 0.00 0.00 0.00 4.02
2223 2766 2.652530 GTCTCGGGGCGTTACACA 59.347 61.111 0.00 0.00 0.00 3.72
2224 2767 1.217244 GTCTCGGGGCGTTACACAT 59.783 57.895 0.00 0.00 0.00 3.21
2228 2771 0.390124 TCGGGGCGTTACACATATCC 59.610 55.000 0.00 0.00 0.00 2.59
2231 2774 2.036217 CGGGGCGTTACACATATCCTTA 59.964 50.000 0.00 0.00 0.00 2.69
2232 2775 3.660865 GGGGCGTTACACATATCCTTAG 58.339 50.000 0.00 0.00 0.00 2.18
2233 2776 3.070590 GGGGCGTTACACATATCCTTAGT 59.929 47.826 0.00 0.00 0.00 2.24
2234 2777 4.304939 GGGCGTTACACATATCCTTAGTC 58.695 47.826 0.00 0.00 0.00 2.59
2235 2778 4.304939 GGCGTTACACATATCCTTAGTCC 58.695 47.826 0.00 0.00 0.00 3.85
2236 2779 4.038883 GGCGTTACACATATCCTTAGTCCT 59.961 45.833 0.00 0.00 0.00 3.85
2237 2780 5.452917 GGCGTTACACATATCCTTAGTCCTT 60.453 44.000 0.00 0.00 0.00 3.36
2238 2781 6.047231 GCGTTACACATATCCTTAGTCCTTT 58.953 40.000 0.00 0.00 0.00 3.11
2239 2782 6.537660 GCGTTACACATATCCTTAGTCCTTTT 59.462 38.462 0.00 0.00 0.00 2.27
2240 2783 7.254353 GCGTTACACATATCCTTAGTCCTTTTC 60.254 40.741 0.00 0.00 0.00 2.29
2241 2784 7.762615 CGTTACACATATCCTTAGTCCTTTTCA 59.237 37.037 0.00 0.00 0.00 2.69
2242 2785 9.099454 GTTACACATATCCTTAGTCCTTTTCAG 57.901 37.037 0.00 0.00 0.00 3.02
2243 2786 6.653989 ACACATATCCTTAGTCCTTTTCAGG 58.346 40.000 0.00 0.00 42.50 3.86
2244 2787 6.215636 ACACATATCCTTAGTCCTTTTCAGGT 59.784 38.462 0.00 0.00 41.69 4.00
2245 2788 7.402071 ACACATATCCTTAGTCCTTTTCAGGTA 59.598 37.037 0.00 0.00 41.69 3.08
2246 2789 8.432805 CACATATCCTTAGTCCTTTTCAGGTAT 58.567 37.037 0.00 0.00 41.69 2.73
2247 2790 9.004231 ACATATCCTTAGTCCTTTTCAGGTATT 57.996 33.333 0.00 0.00 41.69 1.89
2248 2791 9.853177 CATATCCTTAGTCCTTTTCAGGTATTT 57.147 33.333 0.00 0.00 41.69 1.40
2250 2793 7.324388 TCCTTAGTCCTTTTCAGGTATTTCA 57.676 36.000 0.00 0.00 41.69 2.69
2251 2794 7.394816 TCCTTAGTCCTTTTCAGGTATTTCAG 58.605 38.462 0.00 0.00 41.69 3.02
2252 2795 6.599638 CCTTAGTCCTTTTCAGGTATTTCAGG 59.400 42.308 0.00 0.00 41.69 3.86
2253 2796 5.843019 AGTCCTTTTCAGGTATTTCAGGA 57.157 39.130 0.00 0.00 41.69 3.86
2254 2797 6.394345 AGTCCTTTTCAGGTATTTCAGGAT 57.606 37.500 0.00 0.00 41.69 3.24
2255 2798 6.183347 AGTCCTTTTCAGGTATTTCAGGATG 58.817 40.000 0.00 0.00 41.69 3.51
2256 2799 5.946377 GTCCTTTTCAGGTATTTCAGGATGT 59.054 40.000 0.00 0.00 41.69 3.06
2257 2800 6.434340 GTCCTTTTCAGGTATTTCAGGATGTT 59.566 38.462 0.00 0.00 41.69 2.71
2258 2801 6.659242 TCCTTTTCAGGTATTTCAGGATGTTC 59.341 38.462 0.00 0.00 41.69 3.18
2259 2802 6.660949 CCTTTTCAGGTATTTCAGGATGTTCT 59.339 38.462 0.00 0.00 34.29 3.01
2260 2803 7.177392 CCTTTTCAGGTATTTCAGGATGTTCTT 59.823 37.037 0.00 0.00 34.29 2.52
2261 2804 7.452880 TTTCAGGTATTTCAGGATGTTCTTG 57.547 36.000 0.00 0.00 37.40 3.02
2262 2805 6.373005 TCAGGTATTTCAGGATGTTCTTGA 57.627 37.500 0.00 0.00 37.40 3.02
2263 2806 6.173339 TCAGGTATTTCAGGATGTTCTTGAC 58.827 40.000 0.00 0.00 31.94 3.18
2264 2807 6.013379 TCAGGTATTTCAGGATGTTCTTGACT 60.013 38.462 0.00 0.00 31.94 3.41
2265 2808 6.093219 CAGGTATTTCAGGATGTTCTTGACTG 59.907 42.308 0.00 0.00 31.94 3.51
2266 2809 5.940470 GGTATTTCAGGATGTTCTTGACTGT 59.060 40.000 0.00 0.00 31.94 3.55
2267 2810 6.431234 GGTATTTCAGGATGTTCTTGACTGTT 59.569 38.462 0.00 0.00 31.94 3.16
2268 2811 5.756195 TTTCAGGATGTTCTTGACTGTTG 57.244 39.130 0.00 0.00 31.94 3.33
2269 2812 4.422073 TCAGGATGTTCTTGACTGTTGT 57.578 40.909 0.00 0.00 37.40 3.32
2270 2813 4.380531 TCAGGATGTTCTTGACTGTTGTC 58.619 43.478 0.00 0.00 39.59 3.18
2271 2814 3.499918 CAGGATGTTCTTGACTGTTGTCC 59.500 47.826 0.00 0.00 42.28 4.02
2272 2815 3.136443 AGGATGTTCTTGACTGTTGTCCA 59.864 43.478 0.00 0.00 42.28 4.02
2273 2816 3.882888 GGATGTTCTTGACTGTTGTCCAA 59.117 43.478 0.00 0.00 42.28 3.53
2274 2817 4.520492 GGATGTTCTTGACTGTTGTCCAAT 59.480 41.667 0.00 0.00 42.28 3.16
2275 2818 4.898829 TGTTCTTGACTGTTGTCCAATG 57.101 40.909 0.00 0.00 42.28 2.82
2276 2819 4.522114 TGTTCTTGACTGTTGTCCAATGA 58.478 39.130 0.00 0.00 42.28 2.57
2277 2820 5.132502 TGTTCTTGACTGTTGTCCAATGAT 58.867 37.500 0.00 0.00 42.28 2.45
2278 2821 5.239306 TGTTCTTGACTGTTGTCCAATGATC 59.761 40.000 0.00 0.00 42.28 2.92
2279 2822 4.326826 TCTTGACTGTTGTCCAATGATCC 58.673 43.478 0.00 0.00 42.28 3.36
2280 2823 3.786368 TGACTGTTGTCCAATGATCCA 57.214 42.857 0.00 0.00 42.28 3.41
2281 2824 3.411446 TGACTGTTGTCCAATGATCCAC 58.589 45.455 0.00 0.00 42.28 4.02
2282 2825 3.072915 TGACTGTTGTCCAATGATCCACT 59.927 43.478 0.00 0.00 42.28 4.00
2283 2826 3.679389 ACTGTTGTCCAATGATCCACTC 58.321 45.455 0.00 0.00 0.00 3.51
2284 2827 3.012518 CTGTTGTCCAATGATCCACTCC 58.987 50.000 0.00 0.00 0.00 3.85
2285 2828 2.644299 TGTTGTCCAATGATCCACTCCT 59.356 45.455 0.00 0.00 0.00 3.69
2286 2829 3.012518 GTTGTCCAATGATCCACTCCTG 58.987 50.000 0.00 0.00 0.00 3.86
2287 2830 1.561076 TGTCCAATGATCCACTCCTGG 59.439 52.381 0.00 0.00 39.23 4.45
2298 2841 3.256704 TCCACTCCTGGATTACTTTGGT 58.743 45.455 0.00 0.00 42.15 3.67
2299 2842 4.431378 TCCACTCCTGGATTACTTTGGTA 58.569 43.478 0.00 0.00 42.15 3.25
2300 2843 4.224370 TCCACTCCTGGATTACTTTGGTAC 59.776 45.833 0.00 0.00 42.15 3.34
2301 2844 4.514401 CACTCCTGGATTACTTTGGTACC 58.486 47.826 4.43 4.43 0.00 3.34
2302 2845 4.225267 CACTCCTGGATTACTTTGGTACCT 59.775 45.833 14.36 0.00 0.00 3.08
2303 2846 4.470304 ACTCCTGGATTACTTTGGTACCTC 59.530 45.833 14.36 0.00 0.00 3.85
2304 2847 3.778629 TCCTGGATTACTTTGGTACCTCC 59.221 47.826 14.36 10.20 33.74 4.30
2305 2848 3.118000 CCTGGATTACTTTGGTACCTCCC 60.118 52.174 14.36 3.41 32.89 4.30
2306 2849 3.780850 CTGGATTACTTTGGTACCTCCCT 59.219 47.826 14.36 0.00 32.89 4.20
2307 2850 3.521937 TGGATTACTTTGGTACCTCCCTG 59.478 47.826 14.36 1.70 32.89 4.45
2308 2851 3.542648 GATTACTTTGGTACCTCCCTGC 58.457 50.000 14.36 0.00 34.77 4.85
2309 2852 2.337359 TACTTTGGTACCTCCCTGCT 57.663 50.000 14.36 0.00 34.77 4.24
2310 2853 2.337359 ACTTTGGTACCTCCCTGCTA 57.663 50.000 14.36 0.00 34.77 3.49
2311 2854 2.627933 ACTTTGGTACCTCCCTGCTAA 58.372 47.619 14.36 0.00 34.77 3.09
2312 2855 2.983898 ACTTTGGTACCTCCCTGCTAAA 59.016 45.455 14.36 1.57 34.77 1.85
2313 2856 3.244805 ACTTTGGTACCTCCCTGCTAAAC 60.245 47.826 14.36 0.00 34.77 2.01
2314 2857 2.337359 TGGTACCTCCCTGCTAAACT 57.663 50.000 14.36 0.00 34.77 2.66
2315 2858 3.478175 TGGTACCTCCCTGCTAAACTA 57.522 47.619 14.36 0.00 34.77 2.24
2316 2859 3.793712 TGGTACCTCCCTGCTAAACTAA 58.206 45.455 14.36 0.00 34.77 2.24
2317 2860 4.368067 TGGTACCTCCCTGCTAAACTAAT 58.632 43.478 14.36 0.00 34.77 1.73
2318 2861 4.163458 TGGTACCTCCCTGCTAAACTAATG 59.837 45.833 14.36 0.00 34.77 1.90
2319 2862 3.933861 ACCTCCCTGCTAAACTAATGG 57.066 47.619 0.00 0.00 0.00 3.16
2320 2863 2.092375 ACCTCCCTGCTAAACTAATGGC 60.092 50.000 0.00 0.00 0.00 4.40
2321 2864 2.092429 CCTCCCTGCTAAACTAATGGCA 60.092 50.000 0.00 0.00 0.00 4.92
2322 2865 3.620488 CTCCCTGCTAAACTAATGGCAA 58.380 45.455 0.00 0.00 34.21 4.52
2323 2866 3.620488 TCCCTGCTAAACTAATGGCAAG 58.380 45.455 0.00 0.00 34.21 4.01
2324 2867 2.689983 CCCTGCTAAACTAATGGCAAGG 59.310 50.000 0.00 0.00 34.21 3.61
2325 2868 2.099756 CCTGCTAAACTAATGGCAAGGC 59.900 50.000 0.00 0.00 34.21 4.35
2326 2869 2.754552 CTGCTAAACTAATGGCAAGGCA 59.245 45.455 0.00 0.00 34.21 4.75
2327 2870 2.491693 TGCTAAACTAATGGCAAGGCAC 59.508 45.455 0.00 0.00 0.00 5.01
2328 2871 2.491693 GCTAAACTAATGGCAAGGCACA 59.508 45.455 0.00 0.00 0.00 4.57
2329 2872 3.673323 GCTAAACTAATGGCAAGGCACAC 60.673 47.826 0.00 0.00 0.00 3.82
2330 2873 1.993956 AACTAATGGCAAGGCACACA 58.006 45.000 0.00 0.00 0.00 3.72
2331 2874 2.220653 ACTAATGGCAAGGCACACAT 57.779 45.000 0.00 0.00 0.00 3.21
2332 2875 2.094675 ACTAATGGCAAGGCACACATC 58.905 47.619 0.00 0.00 0.00 3.06
2333 2876 2.093890 CTAATGGCAAGGCACACATCA 58.906 47.619 0.00 0.00 0.00 3.07
2334 2877 0.892755 AATGGCAAGGCACACATCAG 59.107 50.000 0.00 0.00 0.00 2.90
2335 2878 0.968901 ATGGCAAGGCACACATCAGG 60.969 55.000 0.00 0.00 0.00 3.86
2336 2879 1.604593 GGCAAGGCACACATCAGGT 60.605 57.895 0.00 0.00 0.00 4.00
2337 2880 1.589716 GGCAAGGCACACATCAGGTC 61.590 60.000 0.00 0.00 0.00 3.85
2338 2881 0.607489 GCAAGGCACACATCAGGTCT 60.607 55.000 0.00 0.00 0.00 3.85
2339 2882 1.162698 CAAGGCACACATCAGGTCTG 58.837 55.000 0.00 0.00 0.00 3.51
2340 2883 0.037303 AAGGCACACATCAGGTCTGG 59.963 55.000 0.00 0.00 0.00 3.86
2341 2884 1.130054 AGGCACACATCAGGTCTGGT 61.130 55.000 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 9.429359 ACATGTTCATGTCAACTTTTAACAAAA 57.571 25.926 11.97 0.00 0.00 2.44
35 36 6.380995 TGCTTCATAACATGTTCATGTCAAC 58.619 36.000 15.85 9.16 32.87 3.18
36 37 6.572167 TGCTTCATAACATGTTCATGTCAA 57.428 33.333 15.85 10.13 32.87 3.18
38 39 7.543172 ACAAATGCTTCATAACATGTTCATGTC 59.457 33.333 15.85 10.72 32.87 3.06
39 40 7.380536 ACAAATGCTTCATAACATGTTCATGT 58.619 30.769 15.85 11.97 36.10 3.21
40 41 7.542824 TGACAAATGCTTCATAACATGTTCATG 59.457 33.333 15.85 15.91 0.00 3.07
41 42 7.604549 TGACAAATGCTTCATAACATGTTCAT 58.395 30.769 15.85 8.32 0.00 2.57
42 43 6.979465 TGACAAATGCTTCATAACATGTTCA 58.021 32.000 15.85 6.09 0.00 3.18
43 44 7.044510 CGATGACAAATGCTTCATAACATGTTC 60.045 37.037 15.85 0.00 32.43 3.18
46 47 6.195798 CACGATGACAAATGCTTCATAACATG 59.804 38.462 0.00 0.00 32.43 3.21
47 48 6.260377 CACGATGACAAATGCTTCATAACAT 58.740 36.000 0.00 0.00 32.43 2.71
48 49 5.391843 CCACGATGACAAATGCTTCATAACA 60.392 40.000 0.00 0.00 32.43 2.41
49 50 5.030295 CCACGATGACAAATGCTTCATAAC 58.970 41.667 0.00 0.00 32.43 1.89
80 82 1.076632 TTGTCGTGGCACCCCTTTT 60.077 52.632 12.86 0.00 0.00 2.27
94 96 0.039527 GTGGCACCATTTCCGTTGTC 60.040 55.000 6.29 0.00 0.00 3.18
95 97 1.791103 CGTGGCACCATTTCCGTTGT 61.791 55.000 12.86 0.00 0.00 3.32
132 140 4.611943 CACCGACATCTCAATCGAGTTAT 58.388 43.478 0.00 0.00 40.86 1.89
135 143 1.469940 GCACCGACATCTCAATCGAGT 60.470 52.381 0.00 0.00 40.86 4.18
139 147 3.436704 TCTTTTGCACCGACATCTCAATC 59.563 43.478 0.00 0.00 0.00 2.67
142 150 2.542020 TCTTTTGCACCGACATCTCA 57.458 45.000 0.00 0.00 0.00 3.27
148 156 0.318699 GCCCTTTCTTTTGCACCGAC 60.319 55.000 0.00 0.00 0.00 4.79
149 157 1.791103 CGCCCTTTCTTTTGCACCGA 61.791 55.000 0.00 0.00 0.00 4.69
150 158 1.371635 CGCCCTTTCTTTTGCACCG 60.372 57.895 0.00 0.00 0.00 4.94
161 169 0.038159 CGTGACTCTCTTCGCCCTTT 60.038 55.000 0.00 0.00 0.00 3.11
164 172 2.507324 GCGTGACTCTCTTCGCCC 60.507 66.667 0.00 0.00 42.33 6.13
165 173 1.347817 CTTGCGTGACTCTCTTCGCC 61.348 60.000 5.98 0.00 46.57 5.54
167 175 0.241213 TCCTTGCGTGACTCTCTTCG 59.759 55.000 0.00 0.00 0.00 3.79
170 178 0.534412 CCATCCTTGCGTGACTCTCT 59.466 55.000 0.00 0.00 0.00 3.10
172 180 0.036952 CACCATCCTTGCGTGACTCT 60.037 55.000 0.00 0.00 0.00 3.24
173 181 1.021390 CCACCATCCTTGCGTGACTC 61.021 60.000 0.00 0.00 0.00 3.36
175 183 2.040544 CCCACCATCCTTGCGTGAC 61.041 63.158 0.00 0.00 0.00 3.67
176 184 2.350895 CCCACCATCCTTGCGTGA 59.649 61.111 0.00 0.00 0.00 4.35
177 185 2.751436 CCCCACCATCCTTGCGTG 60.751 66.667 0.00 0.00 0.00 5.34
178 186 3.256960 ACCCCACCATCCTTGCGT 61.257 61.111 0.00 0.00 0.00 5.24
179 187 2.556840 ATCACCCCACCATCCTTGCG 62.557 60.000 0.00 0.00 0.00 4.85
197 209 1.123928 GGACACTCGGAATCTGGGAT 58.876 55.000 0.00 0.00 0.00 3.85
221 233 2.112815 ATTAGCCTTGCCGCGAACC 61.113 57.895 8.23 0.00 0.00 3.62
224 236 1.521457 CTCATTAGCCTTGCCGCGA 60.521 57.895 8.23 0.00 0.00 5.87
225 237 2.537560 CCTCATTAGCCTTGCCGCG 61.538 63.158 0.00 0.00 0.00 6.46
227 239 1.017387 GTTCCTCATTAGCCTTGCCG 58.983 55.000 0.00 0.00 0.00 5.69
232 244 0.613260 TGCACGTTCCTCATTAGCCT 59.387 50.000 0.00 0.00 0.00 4.58
236 248 3.055458 TGATCCTTGCACGTTCCTCATTA 60.055 43.478 0.00 0.00 0.00 1.90
238 250 1.278985 TGATCCTTGCACGTTCCTCAT 59.721 47.619 0.00 0.00 0.00 2.90
239 251 0.684535 TGATCCTTGCACGTTCCTCA 59.315 50.000 0.00 0.00 0.00 3.86
244 256 1.468520 CCGAATTGATCCTTGCACGTT 59.531 47.619 0.00 0.00 0.00 3.99
252 264 2.923121 CACCATGTCCGAATTGATCCT 58.077 47.619 0.00 0.00 0.00 3.24
254 266 2.016318 TGCACCATGTCCGAATTGATC 58.984 47.619 0.00 0.00 0.00 2.92
256 268 1.811965 CTTGCACCATGTCCGAATTGA 59.188 47.619 0.00 0.00 0.00 2.57
260 272 0.821301 TTGCTTGCACCATGTCCGAA 60.821 50.000 0.00 0.00 0.00 4.30
261 273 1.228094 TTGCTTGCACCATGTCCGA 60.228 52.632 0.00 0.00 0.00 4.55
265 277 1.113788 ACAACTTGCTTGCACCATGT 58.886 45.000 0.00 0.00 32.41 3.21
279 291 4.633126 GTGTGATGTATGAGATGCACAACT 59.367 41.667 0.00 0.00 37.91 3.16
280 292 4.392754 TGTGTGATGTATGAGATGCACAAC 59.607 41.667 0.00 0.00 37.91 3.32
281 293 4.577875 TGTGTGATGTATGAGATGCACAA 58.422 39.130 0.00 0.00 37.91 3.33
282 294 4.205065 TGTGTGATGTATGAGATGCACA 57.795 40.909 0.00 0.00 34.28 4.57
341 353 0.106335 CTCCGGAGATGCATGCTTCT 59.894 55.000 30.14 30.14 33.87 2.85
386 398 3.225104 ACCGAGTGTACAACTACTTCCA 58.775 45.455 0.00 0.00 40.07 3.53
434 474 0.778815 CAAGACTCGTGTGCGACTTC 59.221 55.000 0.00 0.00 42.81 3.01
441 481 1.961277 GGGCCACAAGACTCGTGTG 60.961 63.158 15.85 15.85 44.90 3.82
504 544 1.767681 AGTATCTCTACCGACGACCCT 59.232 52.381 0.00 0.00 0.00 4.34
520 560 4.197750 AGTTCCACTATCGTCACGAGTAT 58.802 43.478 5.89 0.00 39.91 2.12
532 572 4.222145 ACCATACACGTCAAGTTCCACTAT 59.778 41.667 0.00 0.00 0.00 2.12
610 651 1.567649 TCCCCTATCACCGTGAGTACT 59.432 52.381 7.41 0.00 0.00 2.73
693 734 6.513806 TGACGCATAGTACCACTACTTTTA 57.486 37.500 0.00 0.00 32.84 1.52
810 852 4.260907 CGATCAATGTGGAACCATCATGAC 60.261 45.833 0.00 0.00 34.36 3.06
813 855 3.889815 ACGATCAATGTGGAACCATCAT 58.110 40.909 0.00 0.64 34.36 2.45
815 857 4.693283 TCTACGATCAATGTGGAACCATC 58.307 43.478 0.00 0.00 34.36 3.51
816 858 4.443457 CCTCTACGATCAATGTGGAACCAT 60.443 45.833 0.00 0.00 34.36 3.55
817 859 3.118775 CCTCTACGATCAATGTGGAACCA 60.119 47.826 0.00 0.00 34.36 3.67
991 1198 2.042639 GGCCACCATGGATGCCTT 60.043 61.111 30.00 3.47 40.96 4.35
996 1203 2.599597 GCTCTGGCCACCATGGAT 59.400 61.111 21.47 0.00 40.96 3.41
1016 1223 0.734889 CGTTGCTTCATCATCCACCC 59.265 55.000 0.00 0.00 0.00 4.61
1039 1246 0.937699 CTGTTCGTCTTCAACCGCGA 60.938 55.000 8.23 0.00 0.00 5.87
1118 1325 4.899239 CCTCGACCGCCATGCCTC 62.899 72.222 0.00 0.00 0.00 4.70
1130 1337 1.292223 CCTTTCTTGGCGACCTCGA 59.708 57.895 0.00 0.00 43.02 4.04
1131 1338 1.741770 CCCTTTCTTGGCGACCTCG 60.742 63.158 0.00 0.00 43.27 4.63
1132 1339 0.391793 CTCCCTTTCTTGGCGACCTC 60.392 60.000 0.00 0.00 0.00 3.85
1133 1340 1.679898 CTCCCTTTCTTGGCGACCT 59.320 57.895 0.00 0.00 0.00 3.85
1134 1341 1.377333 CCTCCCTTTCTTGGCGACC 60.377 63.158 0.00 0.00 0.00 4.79
1135 1342 2.041115 GCCTCCCTTTCTTGGCGAC 61.041 63.158 0.00 0.00 35.79 5.19
1136 1343 2.351276 GCCTCCCTTTCTTGGCGA 59.649 61.111 0.00 0.00 35.79 5.54
1138 1345 2.346541 GCTGCCTCCCTTTCTTGGC 61.347 63.158 0.00 0.00 45.10 4.52
1139 1346 0.964358 CTGCTGCCTCCCTTTCTTGG 60.964 60.000 0.00 0.00 0.00 3.61
1140 1347 0.964358 CCTGCTGCCTCCCTTTCTTG 60.964 60.000 0.00 0.00 0.00 3.02
1141 1348 1.381851 CCTGCTGCCTCCCTTTCTT 59.618 57.895 0.00 0.00 0.00 2.52
1142 1349 2.610519 CCCTGCTGCCTCCCTTTCT 61.611 63.158 0.00 0.00 0.00 2.52
1143 1350 2.044551 CCCTGCTGCCTCCCTTTC 60.045 66.667 0.00 0.00 0.00 2.62
1144 1351 3.665971 CCCCTGCTGCCTCCCTTT 61.666 66.667 0.00 0.00 0.00 3.11
1166 1373 3.957535 CAAGGCCATCCGCATCGC 61.958 66.667 5.01 0.00 40.31 4.58
1168 1375 3.957535 CGCAAGGCCATCCGCATC 61.958 66.667 5.01 0.00 40.31 3.91
1203 1410 4.415332 TCCTCGTCACCGCTTCGC 62.415 66.667 0.00 0.00 0.00 4.70
1204 1411 2.202492 CTCCTCGTCACCGCTTCG 60.202 66.667 0.00 0.00 0.00 3.79
1205 1412 2.182030 CCTCCTCGTCACCGCTTC 59.818 66.667 0.00 0.00 0.00 3.86
1206 1413 4.070552 GCCTCCTCGTCACCGCTT 62.071 66.667 0.00 0.00 0.00 4.68
1219 1426 4.785453 CTTCTGCACCCCGGCCTC 62.785 72.222 0.00 0.00 0.00 4.70
1221 1428 4.115199 ATCTTCTGCACCCCGGCC 62.115 66.667 0.00 0.00 0.00 6.13
1222 1429 2.825836 CATCTTCTGCACCCCGGC 60.826 66.667 0.00 0.00 0.00 6.13
1223 1430 2.124570 CCATCTTCTGCACCCCGG 60.125 66.667 0.00 0.00 0.00 5.73
1224 1431 2.825836 GCCATCTTCTGCACCCCG 60.826 66.667 0.00 0.00 0.00 5.73
1225 1432 2.615227 ATCGCCATCTTCTGCACCCC 62.615 60.000 0.00 0.00 0.00 4.95
1226 1433 1.153086 ATCGCCATCTTCTGCACCC 60.153 57.895 0.00 0.00 0.00 4.61
1227 1434 0.462581 TCATCGCCATCTTCTGCACC 60.463 55.000 0.00 0.00 0.00 5.01
1228 1435 0.935898 CTCATCGCCATCTTCTGCAC 59.064 55.000 0.00 0.00 0.00 4.57
1229 1436 0.179065 CCTCATCGCCATCTTCTGCA 60.179 55.000 0.00 0.00 0.00 4.41
1235 1442 0.392336 GCTTCTCCTCATCGCCATCT 59.608 55.000 0.00 0.00 0.00 2.90
1238 1445 0.107993 CTTGCTTCTCCTCATCGCCA 60.108 55.000 0.00 0.00 0.00 5.69
1241 1448 1.753649 TCCTCTTGCTTCTCCTCATCG 59.246 52.381 0.00 0.00 0.00 3.84
1242 1449 3.030291 TCTCCTCTTGCTTCTCCTCATC 58.970 50.000 0.00 0.00 0.00 2.92
1243 1450 3.033184 CTCTCCTCTTGCTTCTCCTCAT 58.967 50.000 0.00 0.00 0.00 2.90
1248 1455 0.901124 TGCCTCTCCTCTTGCTTCTC 59.099 55.000 0.00 0.00 0.00 2.87
1251 1458 1.299321 GCTGCCTCTCCTCTTGCTT 59.701 57.895 0.00 0.00 0.00 3.91
1301 1533 4.742201 CACCTCCTCCGCACCGTG 62.742 72.222 0.00 0.00 0.00 4.94
1302 1534 4.988716 TCACCTCCTCCGCACCGT 62.989 66.667 0.00 0.00 0.00 4.83
1303 1535 3.461773 ATCACCTCCTCCGCACCG 61.462 66.667 0.00 0.00 0.00 4.94
1305 1537 2.187946 CCATCACCTCCTCCGCAC 59.812 66.667 0.00 0.00 0.00 5.34
1306 1538 3.083349 CCCATCACCTCCTCCGCA 61.083 66.667 0.00 0.00 0.00 5.69
1307 1539 4.554036 GCCCATCACCTCCTCCGC 62.554 72.222 0.00 0.00 0.00 5.54
1308 1540 3.083349 TGCCCATCACCTCCTCCG 61.083 66.667 0.00 0.00 0.00 4.63
1312 1621 1.524482 GTCTCTGCCCATCACCTCC 59.476 63.158 0.00 0.00 0.00 4.30
1318 1627 2.187946 CACCCGTCTCTGCCCATC 59.812 66.667 0.00 0.00 0.00 3.51
1319 1628 3.402681 CCACCCGTCTCTGCCCAT 61.403 66.667 0.00 0.00 0.00 4.00
1327 1636 2.365635 CCCTCATCCCACCCGTCT 60.366 66.667 0.00 0.00 0.00 4.18
1329 1638 2.365635 CTCCCTCATCCCACCCGT 60.366 66.667 0.00 0.00 0.00 5.28
1330 1639 3.866582 GCTCCCTCATCCCACCCG 61.867 72.222 0.00 0.00 0.00 5.28
1336 1645 1.355718 TTCCCATGGCTCCCTCATCC 61.356 60.000 6.09 0.00 0.00 3.51
1337 1646 0.110104 CTTCCCATGGCTCCCTCATC 59.890 60.000 6.09 0.00 0.00 2.92
1338 1647 2.004408 GCTTCCCATGGCTCCCTCAT 62.004 60.000 6.09 0.00 0.00 2.90
1339 1648 2.683465 GCTTCCCATGGCTCCCTCA 61.683 63.158 6.09 0.00 0.00 3.86
1340 1649 2.194326 GCTTCCCATGGCTCCCTC 59.806 66.667 6.09 0.00 0.00 4.30
1341 1650 3.801997 CGCTTCCCATGGCTCCCT 61.802 66.667 6.09 0.00 0.00 4.20
1342 1651 4.883354 CCGCTTCCCATGGCTCCC 62.883 72.222 6.09 0.00 0.00 4.30
1369 1699 3.234630 TTTCCTCCACCTCGTGCCG 62.235 63.158 0.00 0.00 31.34 5.69
1376 1706 0.252927 CCTCCTCCTTTCCTCCACCT 60.253 60.000 0.00 0.00 0.00 4.00
1377 1707 0.252742 TCCTCCTCCTTTCCTCCACC 60.253 60.000 0.00 0.00 0.00 4.61
1378 1708 1.199615 CTCCTCCTCCTTTCCTCCAC 58.800 60.000 0.00 0.00 0.00 4.02
1380 1710 0.043485 ACCTCCTCCTCCTTTCCTCC 59.957 60.000 0.00 0.00 0.00 4.30
1382 1712 0.324830 CGACCTCCTCCTCCTTTCCT 60.325 60.000 0.00 0.00 0.00 3.36
1383 1713 1.331399 CCGACCTCCTCCTCCTTTCC 61.331 65.000 0.00 0.00 0.00 3.13
1385 1715 1.306226 CCCGACCTCCTCCTCCTTT 60.306 63.158 0.00 0.00 0.00 3.11
1387 1717 4.467107 GCCCGACCTCCTCCTCCT 62.467 72.222 0.00 0.00 0.00 3.69
1392 1722 4.162690 ATTGCGCCCGACCTCCTC 62.163 66.667 4.18 0.00 0.00 3.71
1396 1726 4.473520 CCTCATTGCGCCCGACCT 62.474 66.667 4.18 0.00 0.00 3.85
1397 1727 3.969250 TTCCTCATTGCGCCCGACC 62.969 63.158 4.18 0.00 0.00 4.79
1399 1729 2.125147 CTTCCTCATTGCGCCCGA 60.125 61.111 4.18 0.00 0.00 5.14
1402 1732 0.813210 CTCCTCTTCCTCATTGCGCC 60.813 60.000 4.18 0.00 0.00 6.53
1403 1733 0.813210 CCTCCTCTTCCTCATTGCGC 60.813 60.000 0.00 0.00 0.00 6.09
1404 1734 0.179062 CCCTCCTCTTCCTCATTGCG 60.179 60.000 0.00 0.00 0.00 4.85
1405 1735 0.182299 CCCCTCCTCTTCCTCATTGC 59.818 60.000 0.00 0.00 0.00 3.56
1408 1738 1.482177 CGATCCCCTCCTCTTCCTCAT 60.482 57.143 0.00 0.00 0.00 2.90
1409 1739 0.105964 CGATCCCCTCCTCTTCCTCA 60.106 60.000 0.00 0.00 0.00 3.86
1410 1740 0.186386 TCGATCCCCTCCTCTTCCTC 59.814 60.000 0.00 0.00 0.00 3.71
1411 1741 0.187361 CTCGATCCCCTCCTCTTCCT 59.813 60.000 0.00 0.00 0.00 3.36
1412 1742 1.468506 GCTCGATCCCCTCCTCTTCC 61.469 65.000 0.00 0.00 0.00 3.46
1413 1743 1.801309 CGCTCGATCCCCTCCTCTTC 61.801 65.000 0.00 0.00 0.00 2.87
1414 1744 1.830408 CGCTCGATCCCCTCCTCTT 60.830 63.158 0.00 0.00 0.00 2.85
1415 1745 2.203422 CGCTCGATCCCCTCCTCT 60.203 66.667 0.00 0.00 0.00 3.69
1416 1746 2.203365 TCGCTCGATCCCCTCCTC 60.203 66.667 0.00 0.00 0.00 3.71
1417 1747 2.203422 CTCGCTCGATCCCCTCCT 60.203 66.667 0.00 0.00 0.00 3.69
1418 1748 3.299190 CCTCGCTCGATCCCCTCC 61.299 72.222 0.00 0.00 0.00 4.30
1419 1749 3.984749 GCCTCGCTCGATCCCCTC 61.985 72.222 0.00 0.00 0.00 4.30
1420 1750 4.841617 TGCCTCGCTCGATCCCCT 62.842 66.667 0.00 0.00 0.00 4.79
1421 1751 4.292178 CTGCCTCGCTCGATCCCC 62.292 72.222 0.00 0.00 0.00 4.81
1422 1752 4.959596 GCTGCCTCGCTCGATCCC 62.960 72.222 0.00 0.00 0.00 3.85
1447 1777 4.803426 CTCACGCCGCCAGGAGAC 62.803 72.222 0.00 0.00 39.96 3.36
1455 1785 3.733960 GTTTTCCCCTCACGCCGC 61.734 66.667 0.00 0.00 0.00 6.53
1456 1786 3.419759 CGTTTTCCCCTCACGCCG 61.420 66.667 0.00 0.00 0.00 6.46
1457 1787 2.031465 TCGTTTTCCCCTCACGCC 59.969 61.111 0.00 0.00 33.85 5.68
1458 1788 1.005394 TCTCGTTTTCCCCTCACGC 60.005 57.895 0.00 0.00 33.85 5.34
1459 1789 0.389948 CCTCTCGTTTTCCCCTCACG 60.390 60.000 0.00 0.00 35.18 4.35
1460 1790 0.036294 CCCTCTCGTTTTCCCCTCAC 60.036 60.000 0.00 0.00 0.00 3.51
1461 1791 0.178915 TCCCTCTCGTTTTCCCCTCA 60.179 55.000 0.00 0.00 0.00 3.86
1462 1792 0.537653 CTCCCTCTCGTTTTCCCCTC 59.462 60.000 0.00 0.00 0.00 4.30
1463 1793 0.116541 TCTCCCTCTCGTTTTCCCCT 59.883 55.000 0.00 0.00 0.00 4.79
1464 1794 0.537653 CTCTCCCTCTCGTTTTCCCC 59.462 60.000 0.00 0.00 0.00 4.81
1465 1795 0.537653 CCTCTCCCTCTCGTTTTCCC 59.462 60.000 0.00 0.00 0.00 3.97
1466 1796 1.478916 CTCCTCTCCCTCTCGTTTTCC 59.521 57.143 0.00 0.00 0.00 3.13
1467 1797 1.478916 CCTCCTCTCCCTCTCGTTTTC 59.521 57.143 0.00 0.00 0.00 2.29
1468 1798 1.562783 CCTCCTCTCCCTCTCGTTTT 58.437 55.000 0.00 0.00 0.00 2.43
1469 1799 0.324830 CCCTCCTCTCCCTCTCGTTT 60.325 60.000 0.00 0.00 0.00 3.60
1470 1800 1.308326 CCCTCCTCTCCCTCTCGTT 59.692 63.158 0.00 0.00 0.00 3.85
1471 1801 2.695970 CCCCTCCTCTCCCTCTCGT 61.696 68.421 0.00 0.00 0.00 4.18
1472 1802 1.725169 ATCCCCTCCTCTCCCTCTCG 61.725 65.000 0.00 0.00 0.00 4.04
1473 1803 0.114364 GATCCCCTCCTCTCCCTCTC 59.886 65.000 0.00 0.00 0.00 3.20
1474 1804 1.725169 CGATCCCCTCCTCTCCCTCT 61.725 65.000 0.00 0.00 0.00 3.69
1475 1805 1.228737 CGATCCCCTCCTCTCCCTC 60.229 68.421 0.00 0.00 0.00 4.30
1476 1806 2.784654 CCGATCCCCTCCTCTCCCT 61.785 68.421 0.00 0.00 0.00 4.20
1477 1807 2.203714 CCGATCCCCTCCTCTCCC 60.204 72.222 0.00 0.00 0.00 4.30
1478 1808 2.203714 CCCGATCCCCTCCTCTCC 60.204 72.222 0.00 0.00 0.00 3.71
1479 1809 2.920384 GCCCGATCCCCTCCTCTC 60.920 72.222 0.00 0.00 0.00 3.20
1480 1810 3.765257 CTGCCCGATCCCCTCCTCT 62.765 68.421 0.00 0.00 0.00 3.69
1481 1811 3.237741 CTGCCCGATCCCCTCCTC 61.238 72.222 0.00 0.00 0.00 3.71
1482 1812 4.888325 CCTGCCCGATCCCCTCCT 62.888 72.222 0.00 0.00 0.00 3.69
1487 1817 4.880426 TCTCCCCTGCCCGATCCC 62.880 72.222 0.00 0.00 0.00 3.85
1490 1820 4.888325 CCCTCTCCCCTGCCCGAT 62.888 72.222 0.00 0.00 0.00 4.18
1498 1828 1.695016 CCTAACCCTAACCCTCTCCCC 60.695 61.905 0.00 0.00 0.00 4.81
1501 1831 2.117051 CCACCTAACCCTAACCCTCTC 58.883 57.143 0.00 0.00 0.00 3.20
1502 1832 1.274242 CCCACCTAACCCTAACCCTCT 60.274 57.143 0.00 0.00 0.00 3.69
1504 1834 0.801574 TCCCACCTAACCCTAACCCT 59.198 55.000 0.00 0.00 0.00 4.34
1508 1838 1.556238 CCCACTCCCACCTAACCCTAA 60.556 57.143 0.00 0.00 0.00 2.69
1509 1839 0.043637 CCCACTCCCACCTAACCCTA 59.956 60.000 0.00 0.00 0.00 3.53
1510 1840 1.229853 CCCACTCCCACCTAACCCT 60.230 63.158 0.00 0.00 0.00 4.34
1511 1841 2.306384 CCCCACTCCCACCTAACCC 61.306 68.421 0.00 0.00 0.00 4.11
1512 1842 2.980177 GCCCCACTCCCACCTAACC 61.980 68.421 0.00 0.00 0.00 2.85
1513 1843 2.675371 GCCCCACTCCCACCTAAC 59.325 66.667 0.00 0.00 0.00 2.34
1514 1844 3.006728 CGCCCCACTCCCACCTAA 61.007 66.667 0.00 0.00 0.00 2.69
1567 1897 2.430610 GCCGAGCTGGGTCATCTCT 61.431 63.158 16.88 0.00 38.63 3.10
1578 1908 4.140599 CTTCTCCGCAGCCGAGCT 62.141 66.667 5.92 0.00 40.77 4.09
1612 1942 0.552848 AGGAGAGAGAGAGAGCCCAG 59.447 60.000 0.00 0.00 0.00 4.45
1613 1943 1.006813 AAGGAGAGAGAGAGAGCCCA 58.993 55.000 0.00 0.00 0.00 5.36
1614 1944 3.525800 ATAAGGAGAGAGAGAGAGCCC 57.474 52.381 0.00 0.00 0.00 5.19
1615 1945 5.598417 AGAAAATAAGGAGAGAGAGAGAGCC 59.402 44.000 0.00 0.00 0.00 4.70
1616 1946 6.239036 GGAGAAAATAAGGAGAGAGAGAGAGC 60.239 46.154 0.00 0.00 0.00 4.09
1618 1948 6.980577 AGGAGAAAATAAGGAGAGAGAGAGA 58.019 40.000 0.00 0.00 0.00 3.10
1634 2148 3.642848 AGAAAATGGCAGCAAGGAGAAAA 59.357 39.130 0.00 0.00 0.00 2.29
1635 2149 3.233507 AGAAAATGGCAGCAAGGAGAAA 58.766 40.909 0.00 0.00 0.00 2.52
1638 2152 3.006110 TGAAAGAAAATGGCAGCAAGGAG 59.994 43.478 0.00 0.00 0.00 3.69
1717 2235 2.408565 TCCGAGGATATTGGCTTCCTT 58.591 47.619 0.00 0.00 42.48 3.36
1722 2240 1.625818 GGTGATCCGAGGATATTGGCT 59.374 52.381 4.36 0.00 34.60 4.75
1729 2247 3.455910 TCTCATTTTGGTGATCCGAGGAT 59.544 43.478 3.97 3.97 37.59 3.24
1731 2249 3.266510 TCTCATTTTGGTGATCCGAGG 57.733 47.619 0.00 0.00 36.30 4.63
1757 2278 2.554893 GGTGCCAAACGTATTTTCCTGA 59.445 45.455 0.00 0.00 0.00 3.86
1760 2281 1.971792 CGGTGCCAAACGTATTTTCC 58.028 50.000 0.00 0.00 0.00 3.13
1769 2291 1.007387 CTTCCAAGCGGTGCCAAAC 60.007 57.895 0.00 0.00 0.00 2.93
1844 2367 8.010733 TCTGAACATTTTTGGACTCTTCAAAT 57.989 30.769 0.00 0.00 34.58 2.32
1849 2372 9.671279 AAAAATTCTGAACATTTTTGGACTCTT 57.329 25.926 11.58 0.00 40.64 2.85
1912 2440 7.696992 ACTTCAAGTTTTGTCCTCAAACTTA 57.303 32.000 9.78 0.00 42.28 2.24
2137 2678 7.867909 TGATTTGTTTTGTCGGTTGCATTTATA 59.132 29.630 0.00 0.00 0.00 0.98
2140 2682 4.872691 TGATTTGTTTTGTCGGTTGCATTT 59.127 33.333 0.00 0.00 0.00 2.32
2149 2692 2.032302 TGTCGGGTGATTTGTTTTGTCG 59.968 45.455 0.00 0.00 0.00 4.35
2224 2767 9.053472 TGAAATACCTGAAAAGGACTAAGGATA 57.947 33.333 0.00 0.00 0.00 2.59
2228 2771 7.394816 TCCTGAAATACCTGAAAAGGACTAAG 58.605 38.462 0.00 0.00 0.00 2.18
2231 2774 5.843019 TCCTGAAATACCTGAAAAGGACT 57.157 39.130 0.00 0.00 0.00 3.85
2232 2775 5.946377 ACATCCTGAAATACCTGAAAAGGAC 59.054 40.000 0.00 0.00 35.28 3.85
2233 2776 6.139679 ACATCCTGAAATACCTGAAAAGGA 57.860 37.500 0.00 0.00 36.81 3.36
2234 2777 6.660949 AGAACATCCTGAAATACCTGAAAAGG 59.339 38.462 0.00 0.00 0.00 3.11
2235 2778 7.693969 AGAACATCCTGAAATACCTGAAAAG 57.306 36.000 0.00 0.00 0.00 2.27
2236 2779 7.723616 TCAAGAACATCCTGAAATACCTGAAAA 59.276 33.333 0.00 0.00 0.00 2.29
2237 2780 7.174946 GTCAAGAACATCCTGAAATACCTGAAA 59.825 37.037 0.00 0.00 0.00 2.69
2238 2781 6.655003 GTCAAGAACATCCTGAAATACCTGAA 59.345 38.462 0.00 0.00 0.00 3.02
2239 2782 6.013379 AGTCAAGAACATCCTGAAATACCTGA 60.013 38.462 0.00 0.00 0.00 3.86
2240 2783 6.093219 CAGTCAAGAACATCCTGAAATACCTG 59.907 42.308 0.00 0.00 0.00 4.00
2241 2784 6.176183 CAGTCAAGAACATCCTGAAATACCT 58.824 40.000 0.00 0.00 0.00 3.08
2242 2785 5.940470 ACAGTCAAGAACATCCTGAAATACC 59.060 40.000 0.00 0.00 0.00 2.73
2243 2786 7.041098 ACAACAGTCAAGAACATCCTGAAATAC 60.041 37.037 0.00 0.00 0.00 1.89
2244 2787 6.998074 ACAACAGTCAAGAACATCCTGAAATA 59.002 34.615 0.00 0.00 0.00 1.40
2245 2788 5.829924 ACAACAGTCAAGAACATCCTGAAAT 59.170 36.000 0.00 0.00 0.00 2.17
2246 2789 5.192927 ACAACAGTCAAGAACATCCTGAAA 58.807 37.500 0.00 0.00 0.00 2.69
2247 2790 4.780815 ACAACAGTCAAGAACATCCTGAA 58.219 39.130 0.00 0.00 0.00 3.02
2248 2791 4.380531 GACAACAGTCAAGAACATCCTGA 58.619 43.478 0.00 0.00 32.50 3.86
2249 2792 3.499918 GGACAACAGTCAAGAACATCCTG 59.500 47.826 0.00 0.00 33.90 3.86
2250 2793 3.136443 TGGACAACAGTCAAGAACATCCT 59.864 43.478 0.00 0.00 33.90 3.24
2251 2794 3.476552 TGGACAACAGTCAAGAACATCC 58.523 45.455 0.00 0.00 33.90 3.51
2252 2795 5.239306 TCATTGGACAACAGTCAAGAACATC 59.761 40.000 0.00 0.00 33.90 3.06
2253 2796 5.132502 TCATTGGACAACAGTCAAGAACAT 58.867 37.500 0.00 0.00 33.90 2.71
2254 2797 4.522114 TCATTGGACAACAGTCAAGAACA 58.478 39.130 0.00 0.00 33.90 3.18
2255 2798 5.335191 GGATCATTGGACAACAGTCAAGAAC 60.335 44.000 0.00 0.00 33.90 3.01
2256 2799 4.761739 GGATCATTGGACAACAGTCAAGAA 59.238 41.667 0.00 0.00 33.90 2.52
2257 2800 4.202451 TGGATCATTGGACAACAGTCAAGA 60.202 41.667 0.00 0.00 33.90 3.02
2258 2801 4.074259 TGGATCATTGGACAACAGTCAAG 58.926 43.478 0.00 0.00 33.90 3.02
2259 2802 3.820467 GTGGATCATTGGACAACAGTCAA 59.180 43.478 0.00 0.00 33.90 3.18
2260 2803 3.072915 AGTGGATCATTGGACAACAGTCA 59.927 43.478 0.00 0.00 33.90 3.41
2261 2804 3.679389 AGTGGATCATTGGACAACAGTC 58.321 45.455 0.00 0.00 0.00 3.51
2262 2805 3.560025 GGAGTGGATCATTGGACAACAGT 60.560 47.826 0.00 0.00 0.00 3.55
2263 2806 3.012518 GGAGTGGATCATTGGACAACAG 58.987 50.000 0.00 0.00 0.00 3.16
2264 2807 2.644299 AGGAGTGGATCATTGGACAACA 59.356 45.455 0.00 0.00 0.00 3.33
2265 2808 3.012518 CAGGAGTGGATCATTGGACAAC 58.987 50.000 0.00 0.00 0.00 3.32
2266 2809 3.354948 CAGGAGTGGATCATTGGACAA 57.645 47.619 0.00 0.00 0.00 3.18
2278 2821 3.721087 ACCAAAGTAATCCAGGAGTGG 57.279 47.619 0.00 0.50 46.63 4.00
2279 2822 4.225267 AGGTACCAAAGTAATCCAGGAGTG 59.775 45.833 15.94 0.00 0.00 3.51
2280 2823 4.436079 AGGTACCAAAGTAATCCAGGAGT 58.564 43.478 15.94 0.00 0.00 3.85
2281 2824 4.141688 GGAGGTACCAAAGTAATCCAGGAG 60.142 50.000 15.94 0.00 36.92 3.69
2282 2825 3.778629 GGAGGTACCAAAGTAATCCAGGA 59.221 47.826 15.94 0.00 36.92 3.86
2283 2826 3.118000 GGGAGGTACCAAAGTAATCCAGG 60.118 52.174 15.94 0.00 37.93 4.45
2284 2827 3.780850 AGGGAGGTACCAAAGTAATCCAG 59.219 47.826 15.94 0.00 37.93 3.86
2285 2828 3.521937 CAGGGAGGTACCAAAGTAATCCA 59.478 47.826 15.94 0.00 37.93 3.41
2286 2829 3.684697 GCAGGGAGGTACCAAAGTAATCC 60.685 52.174 15.94 10.09 41.20 3.01
2287 2830 3.200165 AGCAGGGAGGTACCAAAGTAATC 59.800 47.826 15.94 0.07 41.20 1.75
2288 2831 3.190439 AGCAGGGAGGTACCAAAGTAAT 58.810 45.455 15.94 0.00 41.20 1.89
2289 2832 2.627933 AGCAGGGAGGTACCAAAGTAA 58.372 47.619 15.94 0.00 41.20 2.24
2290 2833 2.337359 AGCAGGGAGGTACCAAAGTA 57.663 50.000 15.94 0.00 41.20 2.24
2291 2834 2.337359 TAGCAGGGAGGTACCAAAGT 57.663 50.000 15.94 0.00 41.20 2.66
2292 2835 3.009143 AGTTTAGCAGGGAGGTACCAAAG 59.991 47.826 15.94 0.00 41.20 2.77
2293 2836 2.983898 AGTTTAGCAGGGAGGTACCAAA 59.016 45.455 15.94 0.00 41.20 3.28
2294 2837 2.627933 AGTTTAGCAGGGAGGTACCAA 58.372 47.619 15.94 0.00 41.20 3.67
2295 2838 2.337359 AGTTTAGCAGGGAGGTACCA 57.663 50.000 15.94 0.00 41.20 3.25
2296 2839 4.444449 CCATTAGTTTAGCAGGGAGGTACC 60.444 50.000 2.73 2.73 38.08 3.34
2297 2840 4.704965 CCATTAGTTTAGCAGGGAGGTAC 58.295 47.826 0.00 0.00 0.00 3.34
2298 2841 3.135895 GCCATTAGTTTAGCAGGGAGGTA 59.864 47.826 0.00 0.00 0.00 3.08
2299 2842 2.092375 GCCATTAGTTTAGCAGGGAGGT 60.092 50.000 0.00 0.00 0.00 3.85
2300 2843 2.092429 TGCCATTAGTTTAGCAGGGAGG 60.092 50.000 0.00 0.00 0.00 4.30
2301 2844 3.281727 TGCCATTAGTTTAGCAGGGAG 57.718 47.619 0.00 0.00 0.00 4.30
2302 2845 3.620488 CTTGCCATTAGTTTAGCAGGGA 58.380 45.455 0.00 0.00 36.44 4.20
2303 2846 2.689983 CCTTGCCATTAGTTTAGCAGGG 59.310 50.000 0.00 0.00 44.62 4.45
2304 2847 2.099756 GCCTTGCCATTAGTTTAGCAGG 59.900 50.000 0.00 0.00 36.44 4.85
2305 2848 2.754552 TGCCTTGCCATTAGTTTAGCAG 59.245 45.455 0.00 0.00 36.44 4.24
2306 2849 2.491693 GTGCCTTGCCATTAGTTTAGCA 59.508 45.455 0.00 0.00 0.00 3.49
2307 2850 2.491693 TGTGCCTTGCCATTAGTTTAGC 59.508 45.455 0.00 0.00 0.00 3.09
2308 2851 3.505680 TGTGTGCCTTGCCATTAGTTTAG 59.494 43.478 0.00 0.00 0.00 1.85
2309 2852 3.491342 TGTGTGCCTTGCCATTAGTTTA 58.509 40.909 0.00 0.00 0.00 2.01
2310 2853 2.315176 TGTGTGCCTTGCCATTAGTTT 58.685 42.857 0.00 0.00 0.00 2.66
2311 2854 1.993956 TGTGTGCCTTGCCATTAGTT 58.006 45.000 0.00 0.00 0.00 2.24
2312 2855 2.094675 GATGTGTGCCTTGCCATTAGT 58.905 47.619 0.00 0.00 0.00 2.24
2313 2856 2.093890 TGATGTGTGCCTTGCCATTAG 58.906 47.619 0.00 0.00 0.00 1.73
2314 2857 2.093890 CTGATGTGTGCCTTGCCATTA 58.906 47.619 0.00 0.00 0.00 1.90
2315 2858 0.892755 CTGATGTGTGCCTTGCCATT 59.107 50.000 0.00 0.00 0.00 3.16
2316 2859 0.968901 CCTGATGTGTGCCTTGCCAT 60.969 55.000 0.00 0.00 0.00 4.40
2317 2860 1.604308 CCTGATGTGTGCCTTGCCA 60.604 57.895 0.00 0.00 0.00 4.92
2318 2861 1.589716 GACCTGATGTGTGCCTTGCC 61.590 60.000 0.00 0.00 0.00 4.52
2319 2862 0.607489 AGACCTGATGTGTGCCTTGC 60.607 55.000 0.00 0.00 0.00 4.01
2320 2863 1.162698 CAGACCTGATGTGTGCCTTG 58.837 55.000 0.00 0.00 30.74 3.61
2321 2864 0.037303 CCAGACCTGATGTGTGCCTT 59.963 55.000 0.00 0.00 36.93 4.35
2322 2865 1.130054 ACCAGACCTGATGTGTGCCT 61.130 55.000 0.00 0.00 36.93 4.75
2323 2866 1.376466 ACCAGACCTGATGTGTGCC 59.624 57.895 0.00 0.00 36.93 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.