Multiple sequence alignment - TraesCS6A01G219000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G219000 chr6A 100.000 5464 0 0 1 5464 405452604 405447141 0.000000e+00 10091.0
1 TraesCS6A01G219000 chr6A 92.523 107 3 5 2689 2792 201248480 201248376 1.230000e-31 148.0
2 TraesCS6A01G219000 chr6A 91.398 93 8 0 1 93 16799833 16799925 1.600000e-25 128.0
3 TraesCS6A01G219000 chr6A 93.651 63 4 0 5049 5111 405447491 405447429 1.620000e-15 95.3
4 TraesCS6A01G219000 chr6A 93.651 63 4 0 5114 5176 405447556 405447494 1.620000e-15 95.3
5 TraesCS6A01G219000 chr6B 93.449 1786 77 19 296 2063 445886778 445885015 0.000000e+00 2614.0
6 TraesCS6A01G219000 chr6B 91.221 1720 94 24 3780 5464 445883456 445881759 0.000000e+00 2287.0
7 TraesCS6A01G219000 chr6B 92.607 771 33 13 2777 3525 445884223 445883455 0.000000e+00 1086.0
8 TraesCS6A01G219000 chr6B 93.387 620 33 3 2067 2686 445884968 445884357 0.000000e+00 911.0
9 TraesCS6A01G219000 chr6B 90.984 244 19 3 1 242 445887813 445887571 5.280000e-85 326.0
10 TraesCS6A01G219000 chr6B 88.479 217 23 2 4169 4384 445883037 445882822 1.510000e-65 261.0
11 TraesCS6A01G219000 chr6B 97.183 142 4 0 3524 3665 460488473 460488614 1.970000e-59 241.0
12 TraesCS6A01G219000 chr6D 91.865 1721 93 28 3780 5464 285021162 285019453 0.000000e+00 2359.0
13 TraesCS6A01G219000 chr6D 95.365 1165 42 8 900 2063 285023776 285022623 0.000000e+00 1842.0
14 TraesCS6A01G219000 chr6D 96.349 630 17 3 2067 2694 285022576 285021951 0.000000e+00 1031.0
15 TraesCS6A01G219000 chr6D 97.274 587 16 0 2939 3525 285021747 285021161 0.000000e+00 996.0
16 TraesCS6A01G219000 chr6D 88.601 386 17 11 320 692 285024533 285024162 1.400000e-120 444.0
17 TraesCS6A01G219000 chr6D 86.567 268 26 6 1 266 285024789 285024530 2.490000e-73 287.0
18 TraesCS6A01G219000 chr6D 95.758 165 7 0 2774 2938 285021953 285021789 3.240000e-67 267.0
19 TraesCS6A01G219000 chr6D 91.713 181 15 0 4169 4349 285020733 285020553 9.090000e-63 252.0
20 TraesCS6A01G219000 chr6D 83.436 163 27 0 4224 4386 285020750 285020588 9.480000e-33 152.0
21 TraesCS6A01G219000 chr6D 95.385 65 3 0 5114 5178 285019872 285019808 2.690000e-18 104.0
22 TraesCS6A01G219000 chr2A 97.931 145 2 1 3521 3665 210063193 210063050 3.270000e-62 250.0
23 TraesCS6A01G219000 chr2A 97.241 145 4 0 3521 3665 587443934 587444078 4.230000e-61 246.0
24 TraesCS6A01G219000 chr2A 96.774 93 1 2 2690 2780 69385952 69386044 2.640000e-33 154.0
25 TraesCS6A01G219000 chr1D 97.203 143 4 0 3523 3665 411905198 411905056 5.470000e-60 243.0
26 TraesCS6A01G219000 chr1D 92.683 123 5 3 3664 3782 201020750 201020628 2.020000e-39 174.0
27 TraesCS6A01G219000 chr1D 94.059 101 2 4 2693 2791 291792042 291791944 3.410000e-32 150.0
28 TraesCS6A01G219000 chr1D 94.286 35 1 1 5406 5440 469030528 469030495 1.000000e-02 52.8
29 TraesCS6A01G219000 chr5D 97.183 142 4 0 3524 3665 347680056 347680197 1.970000e-59 241.0
30 TraesCS6A01G219000 chr5D 95.302 149 7 0 3517 3665 478597196 478597344 2.540000e-58 237.0
31 TraesCS6A01G219000 chr5D 93.443 122 4 3 3664 3781 9058122 9058243 1.560000e-40 178.0
32 TraesCS6A01G219000 chr5D 93.496 123 3 4 3664 3781 319212564 319212686 1.560000e-40 178.0
33 TraesCS6A01G219000 chr5D 92.857 126 4 4 3664 3785 347680239 347680363 1.560000e-40 178.0
34 TraesCS6A01G219000 chr3D 97.183 142 4 0 3524 3665 65174053 65174194 1.970000e-59 241.0
35 TraesCS6A01G219000 chr3D 95.333 150 6 1 3516 3665 578407335 578407187 2.540000e-58 237.0
36 TraesCS6A01G219000 chr3D 93.443 122 4 3 3664 3781 472881997 472881876 1.560000e-40 178.0
37 TraesCS6A01G219000 chr3D 90.654 107 9 1 5358 5464 339869595 339869700 2.050000e-29 141.0
38 TraesCS6A01G219000 chr3D 88.073 109 10 2 5359 5464 537167972 537168080 5.750000e-25 126.0
39 TraesCS6A01G219000 chr3D 93.333 75 5 0 5390 5464 351085263 351085189 1.610000e-20 111.0
40 TraesCS6A01G219000 chr7D 93.590 156 9 1 3510 3665 148145158 148145312 1.180000e-56 231.0
41 TraesCS6A01G219000 chr7D 93.496 123 3 4 3664 3782 582600284 582600405 1.560000e-40 178.0
42 TraesCS6A01G219000 chr1A 85.492 193 17 3 5283 5464 23615465 23615273 2.010000e-44 191.0
43 TraesCS6A01G219000 chr1A 90.385 104 9 1 5359 5462 119148744 119148642 9.550000e-28 135.0
44 TraesCS6A01G219000 chr1A 89.623 106 11 0 5359 5464 448350723 448350828 9.550000e-28 135.0
45 TraesCS6A01G219000 chr1A 97.143 35 1 0 5406 5440 561981210 561981176 5.910000e-05 60.2
46 TraesCS6A01G219000 chr1A 85.000 60 8 1 5406 5464 562003134 562003075 5.910000e-05 60.2
47 TraesCS6A01G219000 chr1A 94.444 36 2 0 332 367 49094819 49094854 7.650000e-04 56.5
48 TraesCS6A01G219000 chr2D 93.443 122 3 4 3664 3781 222895413 222895293 5.630000e-40 176.0
49 TraesCS6A01G219000 chr2D 83.333 204 16 10 5279 5464 606714514 606714311 7.280000e-39 172.0
50 TraesCS6A01G219000 chr2D 92.453 106 8 0 5359 5464 33901957 33902062 9.480000e-33 152.0
51 TraesCS6A01G219000 chr4A 91.473 129 7 3 3664 3788 718620450 718620322 2.020000e-39 174.0
52 TraesCS6A01G219000 chr4A 80.905 199 24 4 5280 5464 628853746 628853944 1.590000e-30 145.0
53 TraesCS6A01G219000 chr4A 90.566 106 10 0 5359 5464 558644941 558644836 2.050000e-29 141.0
54 TraesCS6A01G219000 chr5A 91.339 127 7 3 3664 3786 597683492 597683618 2.620000e-38 171.0
55 TraesCS6A01G219000 chr5A 81.865 193 20 5 5286 5464 493818796 493818605 1.230000e-31 148.0
56 TraesCS6A01G219000 chr5A 93.878 98 2 4 2689 2785 621758329 621758423 1.590000e-30 145.0
57 TraesCS6A01G219000 chr7B 95.283 106 5 0 5359 5464 663109969 663109864 9.410000e-38 169.0
58 TraesCS6A01G219000 chr7B 97.753 89 1 1 2689 2776 100745835 100745923 9.480000e-33 152.0
59 TraesCS6A01G219000 chr7B 93.878 98 4 2 2685 2781 105954109 105954205 4.410000e-31 147.0
60 TraesCS6A01G219000 chr3B 87.075 147 11 3 5326 5464 557176440 557176294 5.670000e-35 159.0
61 TraesCS6A01G219000 chr3A 90.244 123 9 3 5344 5464 45082510 45082631 2.040000e-34 158.0
62 TraesCS6A01G219000 chr7A 96.739 92 1 2 2690 2780 473897579 473897489 9.480000e-33 152.0
63 TraesCS6A01G219000 chr7A 92.233 103 7 1 2689 2790 409259616 409259514 1.590000e-30 145.0
64 TraesCS6A01G219000 chr7A 91.509 106 8 1 5359 5464 680408934 680408830 1.590000e-30 145.0
65 TraesCS6A01G219000 chr7A 89.000 100 11 0 1 100 152933820 152933721 2.070000e-24 124.0
66 TraesCS6A01G219000 chr7A 89.535 86 9 0 1 86 152973756 152973671 5.790000e-20 110.0
67 TraesCS6A01G219000 chr5B 96.739 92 1 2 2690 2779 687809683 687809774 9.480000e-33 152.0
68 TraesCS6A01G219000 chr5B 90.476 105 8 2 5360 5464 694305062 694305164 2.650000e-28 137.0
69 TraesCS6A01G219000 chr1B 91.176 102 7 2 5362 5462 171408642 171408542 2.650000e-28 137.0
70 TraesCS6A01G219000 chr4B 86.667 120 16 0 5345 5464 107860839 107860958 3.430000e-27 134.0
71 TraesCS6A01G219000 chr2B 97.059 34 1 0 334 367 728751377 728751344 2.130000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G219000 chr6A 405447141 405452604 5463 True 10091.0 10091 100.000000 1 5464 1 chr6A.!!$R2 5463
1 TraesCS6A01G219000 chr6B 445881759 445887813 6054 True 1247.5 2614 91.687833 1 5464 6 chr6B.!!$R1 5463
2 TraesCS6A01G219000 chr6D 285019453 285024789 5336 True 773.4 2359 92.231300 1 5464 10 chr6D.!!$R1 5463

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
618 1387 0.106217 ATTCCGTAAATGCCCCCTGG 60.106 55.0 0.00 0.0 0.00 4.45 F
860 1642 0.454957 CCTTTGCGCTTCATTCCGTG 60.455 55.0 9.73 0.0 0.00 4.94 F
1437 2387 0.657312 GCTTGGTTGCTTGTTTTGCC 59.343 50.0 0.00 0.0 0.00 4.52 F
2707 3828 0.042131 AATGTACTCCCTCCGTCCCA 59.958 55.0 0.00 0.0 0.00 4.37 F
3611 4780 0.033781 TGCATTGGAAAGGTGCAAGC 59.966 50.0 0.00 0.0 44.99 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1745 2695 1.071699 TCACTGGCAGTCCAACCTAAC 59.928 52.381 19.13 0.0 42.91 2.34 R
2691 3812 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.0 0.00 2.73 R
2880 4001 0.036732 TGCTTGCCAGTCCCAGTAAG 59.963 55.000 0.00 0.0 0.00 2.34 R
3640 4809 0.034089 GCACTTAGCTCATTGGGGGT 60.034 55.000 0.00 0.0 41.15 4.95 R
5155 6394 1.003003 TGTGGGATTTCAGACATGCGA 59.997 47.619 0.00 0.0 0.00 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
137 138 4.092821 CGATTTGATAGCAACAAGGAACGA 59.907 41.667 0.00 0.00 32.79 3.85
139 140 5.759506 TTTGATAGCAACAAGGAACGAAA 57.240 34.783 0.00 0.00 32.79 3.46
140 141 5.356882 TTGATAGCAACAAGGAACGAAAG 57.643 39.130 0.00 0.00 0.00 2.62
141 142 3.188460 TGATAGCAACAAGGAACGAAAGC 59.812 43.478 0.00 0.00 0.00 3.51
159 162 3.558931 AGCGATCCCATATGTTGAACA 57.441 42.857 0.00 0.00 0.00 3.18
161 164 2.942376 GCGATCCCATATGTTGAACACA 59.058 45.455 0.00 0.00 40.71 3.72
189 192 3.424565 CGACAGAATACGACAAGACGACT 60.425 47.826 0.00 0.00 37.03 4.18
207 210 5.118990 ACGACTGGAATTGATGAATCGATT 58.881 37.500 11.20 11.20 42.20 3.34
222 225 5.064579 TGAATCGATTCATTGCAACGTACAT 59.935 36.000 31.83 0.00 41.51 2.29
257 260 6.698359 TTTTCAATTTAATAGTGCGTTGGC 57.302 33.333 0.00 0.00 40.52 4.52
266 269 3.276109 TGCGTTGGCATGGTCATG 58.724 55.556 6.59 6.59 46.21 3.07
267 270 1.303155 TGCGTTGGCATGGTCATGA 60.303 52.632 14.43 0.00 46.21 3.07
268 271 0.892814 TGCGTTGGCATGGTCATGAA 60.893 50.000 14.43 0.00 46.21 2.57
269 272 0.456653 GCGTTGGCATGGTCATGAAC 60.457 55.000 14.43 2.98 41.20 3.18
270 273 1.167851 CGTTGGCATGGTCATGAACT 58.832 50.000 12.94 0.00 41.20 3.01
271 274 1.131126 CGTTGGCATGGTCATGAACTC 59.869 52.381 12.94 1.07 41.20 3.01
284 287 6.031751 GTCATGAACTCAAGACCTCTTAGT 57.968 41.667 0.00 0.00 38.29 2.24
288 291 4.899457 TGAACTCAAGACCTCTTAGTTGGA 59.101 41.667 11.45 0.00 33.83 3.53
319 1075 6.610075 ATTAAAATCATGCTCCAACCAACT 57.390 33.333 0.00 0.00 0.00 3.16
326 1082 2.507484 TGCTCCAACCAACTCATTCAG 58.493 47.619 0.00 0.00 0.00 3.02
375 1131 9.897744 ACGGACAATATATTTCAATAATTGCAG 57.102 29.630 0.00 8.72 0.00 4.41
423 1179 6.091718 TGGGCTGGTGTTTTCTAAAATAAC 57.908 37.500 0.00 0.00 0.00 1.89
465 1234 3.676093 AGACCCCAGACGATTTTTCTTC 58.324 45.455 0.00 0.00 0.00 2.87
468 1237 2.290960 CCCCAGACGATTTTTCTTCCCT 60.291 50.000 0.00 0.00 0.00 4.20
490 1259 0.531200 AACTGTCCCGGACGATCTTC 59.469 55.000 13.02 0.00 34.95 2.87
557 1326 2.484203 GTCCGTCGTCCTCTTCCG 59.516 66.667 0.00 0.00 0.00 4.30
558 1327 2.749044 TCCGTCGTCCTCTTCCGG 60.749 66.667 0.00 0.00 39.98 5.14
559 1328 3.060615 CCGTCGTCCTCTTCCGGT 61.061 66.667 0.00 0.00 34.10 5.28
560 1329 2.484203 CGTCGTCCTCTTCCGGTC 59.516 66.667 0.00 0.00 0.00 4.79
562 1331 1.584380 CGTCGTCCTCTTCCGGTCTT 61.584 60.000 0.00 0.00 0.00 3.01
564 1333 0.964358 TCGTCCTCTTCCGGTCTTCC 60.964 60.000 0.00 0.00 0.00 3.46
565 1334 1.898885 GTCCTCTTCCGGTCTTCCC 59.101 63.158 0.00 0.00 0.00 3.97
566 1335 1.305887 TCCTCTTCCGGTCTTCCCC 60.306 63.158 0.00 0.00 0.00 4.81
567 1336 1.612442 CCTCTTCCGGTCTTCCCCA 60.612 63.158 0.00 0.00 0.00 4.96
568 1337 1.198759 CCTCTTCCGGTCTTCCCCAA 61.199 60.000 0.00 0.00 0.00 4.12
569 1338 0.912486 CTCTTCCGGTCTTCCCCAAT 59.088 55.000 0.00 0.00 0.00 3.16
570 1339 0.909623 TCTTCCGGTCTTCCCCAATC 59.090 55.000 0.00 0.00 0.00 2.67
571 1340 0.618458 CTTCCGGTCTTCCCCAATCA 59.382 55.000 0.00 0.00 0.00 2.57
572 1341 0.326927 TTCCGGTCTTCCCCAATCAC 59.673 55.000 0.00 0.00 0.00 3.06
573 1342 0.838554 TCCGGTCTTCCCCAATCACA 60.839 55.000 0.00 0.00 0.00 3.58
574 1343 0.255890 CCGGTCTTCCCCAATCACAT 59.744 55.000 0.00 0.00 0.00 3.21
575 1344 1.668419 CGGTCTTCCCCAATCACATC 58.332 55.000 0.00 0.00 0.00 3.06
576 1345 1.747206 CGGTCTTCCCCAATCACATCC 60.747 57.143 0.00 0.00 0.00 3.51
615 1384 1.954382 GAGAATTCCGTAAATGCCCCC 59.046 52.381 0.65 0.00 0.00 5.40
616 1385 1.569072 AGAATTCCGTAAATGCCCCCT 59.431 47.619 0.65 0.00 0.00 4.79
617 1386 1.681264 GAATTCCGTAAATGCCCCCTG 59.319 52.381 0.00 0.00 0.00 4.45
618 1387 0.106217 ATTCCGTAAATGCCCCCTGG 60.106 55.000 0.00 0.00 0.00 4.45
619 1388 1.502527 TTCCGTAAATGCCCCCTGGT 61.503 55.000 0.00 0.00 0.00 4.00
620 1389 1.000145 CCGTAAATGCCCCCTGGTT 60.000 57.895 0.00 0.00 0.00 3.67
734 1504 4.150454 CTCCCCTCCTCGCCTCCT 62.150 72.222 0.00 0.00 0.00 3.69
735 1505 4.144727 TCCCCTCCTCGCCTCCTC 62.145 72.222 0.00 0.00 0.00 3.71
747 1517 4.218578 CTCCTCAGCGCTCGCCAT 62.219 66.667 7.13 0.00 43.17 4.40
820 1602 2.171725 GCCCACACGTATCTTCGGC 61.172 63.158 0.00 0.00 34.94 5.54
860 1642 0.454957 CCTTTGCGCTTCATTCCGTG 60.455 55.000 9.73 0.00 0.00 4.94
898 1680 3.351794 TTTTTGGGGCGTTTTTCCTTT 57.648 38.095 0.00 0.00 0.00 3.11
914 1862 2.445145 TCCTTTCATTTGTGGGTGGAGA 59.555 45.455 0.00 0.00 0.00 3.71
1138 2086 1.472878 TCTGAAGCTAGCAGTACGGTG 59.527 52.381 18.83 0.00 34.98 4.94
1273 2223 6.256975 TGCTAAAAGTATACGTGCCAAGTATG 59.743 38.462 12.69 0.00 36.36 2.39
1425 2375 6.780457 ATATCTTAGTTGCATTGCTTGGTT 57.220 33.333 10.49 0.00 0.00 3.67
1437 2387 0.657312 GCTTGGTTGCTTGTTTTGCC 59.343 50.000 0.00 0.00 0.00 4.52
1442 2392 3.791245 TGGTTGCTTGTTTTGCCTTTAG 58.209 40.909 0.00 0.00 0.00 1.85
1455 2405 3.959943 TGCCTTTAGTTTGTTTCTTCGC 58.040 40.909 0.00 0.00 0.00 4.70
1462 2412 4.900635 AGTTTGTTTCTTCGCTCACATT 57.099 36.364 0.00 0.00 0.00 2.71
1479 2429 7.415095 CGCTCACATTGTAAAATTTCCCTGATA 60.415 37.037 0.00 0.00 0.00 2.15
1745 2695 4.334759 AGTTCTAAAGCACATGCAGCATAG 59.665 41.667 7.82 5.08 45.16 2.23
1749 2699 4.627611 AAAGCACATGCAGCATAGTTAG 57.372 40.909 7.82 0.00 45.16 2.34
1801 2752 7.660208 ACTTAGAACTACCAACAGTTAATGTGG 59.340 37.037 0.00 0.00 43.00 4.17
1827 2778 1.005037 CGCAGGGCTCAGTTGTACA 60.005 57.895 0.00 0.00 0.00 2.90
1847 2798 7.471721 TGTACATTTTTGAACTCAACAGTCAG 58.528 34.615 0.00 0.00 35.28 3.51
2063 3014 3.674997 ACTGCGGTAACAATGATGTTCT 58.325 40.909 0.00 0.00 46.78 3.01
2065 3016 2.746904 TGCGGTAACAATGATGTTCTGG 59.253 45.455 0.00 0.00 46.78 3.86
2183 3177 5.166398 CCAGGATTTGCTTTCATTGACTTC 58.834 41.667 0.00 0.00 0.00 3.01
2339 3335 1.102978 GGGGATCATTTCGTGGTTGG 58.897 55.000 0.00 0.00 0.00 3.77
2523 3519 8.681486 TGAATGGTCTGATGTATAATCCTTTG 57.319 34.615 0.00 0.00 0.00 2.77
2574 3570 5.007626 GTCCATCAAAGGAAAAAGCCAAAAC 59.992 40.000 0.00 0.00 39.92 2.43
2593 3589 6.534793 CCAAAACAAAGAACTGTATTTGCACT 59.465 34.615 14.71 2.31 39.14 4.40
2602 3598 6.428159 AGAACTGTATTTGCACTGAAACCTAG 59.572 38.462 0.00 0.00 0.00 3.02
2631 3627 4.440826 TTAGCCCTGTACTTGAAAACCA 57.559 40.909 0.00 0.00 0.00 3.67
2675 3671 9.689976 CAGGAACTAATAACTGATCAGTATCTG 57.310 37.037 28.10 18.26 37.61 2.90
2691 3812 7.436933 TCAGTATCTGTAATCCTGTAGCAATG 58.563 38.462 0.00 0.00 32.61 2.82
2692 3813 7.069950 TCAGTATCTGTAATCCTGTAGCAATGT 59.930 37.037 0.00 0.00 32.61 2.71
2693 3814 8.360390 CAGTATCTGTAATCCTGTAGCAATGTA 58.640 37.037 0.00 0.00 0.00 2.29
2694 3815 8.361139 AGTATCTGTAATCCTGTAGCAATGTAC 58.639 37.037 0.00 0.00 0.00 2.90
2695 3816 6.791867 TCTGTAATCCTGTAGCAATGTACT 57.208 37.500 0.00 0.00 0.00 2.73
2696 3817 6.806751 TCTGTAATCCTGTAGCAATGTACTC 58.193 40.000 0.00 0.00 0.00 2.59
2697 3818 5.914033 TGTAATCCTGTAGCAATGTACTCC 58.086 41.667 0.00 0.00 0.00 3.85
2698 3819 4.423625 AATCCTGTAGCAATGTACTCCC 57.576 45.455 0.00 0.00 0.00 4.30
2699 3820 3.116096 TCCTGTAGCAATGTACTCCCT 57.884 47.619 0.00 0.00 0.00 4.20
2700 3821 3.031736 TCCTGTAGCAATGTACTCCCTC 58.968 50.000 0.00 0.00 0.00 4.30
2701 3822 2.103263 CCTGTAGCAATGTACTCCCTCC 59.897 54.545 0.00 0.00 0.00 4.30
2702 3823 1.754803 TGTAGCAATGTACTCCCTCCG 59.245 52.381 0.00 0.00 0.00 4.63
2703 3824 1.755380 GTAGCAATGTACTCCCTCCGT 59.245 52.381 0.00 0.00 0.00 4.69
2704 3825 0.824759 AGCAATGTACTCCCTCCGTC 59.175 55.000 0.00 0.00 0.00 4.79
2705 3826 0.179081 GCAATGTACTCCCTCCGTCC 60.179 60.000 0.00 0.00 0.00 4.79
2706 3827 0.464452 CAATGTACTCCCTCCGTCCC 59.536 60.000 0.00 0.00 0.00 4.46
2707 3828 0.042131 AATGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
2708 3829 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
2709 3830 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
2710 3831 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
2711 3832 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
2712 3833 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2713 3834 2.488836 ACTCCCTCCGTCCCAAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
2714 3835 3.660959 ACTCCCTCCGTCCCAAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
2715 3836 4.042174 ACTCCCTCCGTCCCAAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
2716 3837 4.102681 ACTCCCTCCGTCCCAAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
2717 3838 4.300345 TCCCTCCGTCCCAAAATATAAGA 58.700 43.478 0.00 0.00 0.00 2.10
2718 3839 4.722781 TCCCTCCGTCCCAAAATATAAGAA 59.277 41.667 0.00 0.00 0.00 2.52
2719 3840 4.820173 CCCTCCGTCCCAAAATATAAGAAC 59.180 45.833 0.00 0.00 0.00 3.01
2720 3841 4.510340 CCTCCGTCCCAAAATATAAGAACG 59.490 45.833 0.00 0.00 0.00 3.95
2721 3842 5.088680 TCCGTCCCAAAATATAAGAACGT 57.911 39.130 0.00 0.00 0.00 3.99
2722 3843 5.490159 TCCGTCCCAAAATATAAGAACGTT 58.510 37.500 0.00 0.00 0.00 3.99
2723 3844 5.939296 TCCGTCCCAAAATATAAGAACGTTT 59.061 36.000 0.46 0.00 0.00 3.60
2724 3845 6.430616 TCCGTCCCAAAATATAAGAACGTTTT 59.569 34.615 0.46 0.00 0.00 2.43
2725 3846 7.040548 TCCGTCCCAAAATATAAGAACGTTTTT 60.041 33.333 9.22 9.22 0.00 1.94
2726 3847 8.235905 CCGTCCCAAAATATAAGAACGTTTTTA 58.764 33.333 13.02 13.02 0.00 1.52
2727 3848 9.054191 CGTCCCAAAATATAAGAACGTTTTTAC 57.946 33.333 12.92 0.00 0.00 2.01
2728 3849 9.896263 GTCCCAAAATATAAGAACGTTTTTACA 57.104 29.630 12.92 2.74 0.00 2.41
2729 3850 9.896263 TCCCAAAATATAAGAACGTTTTTACAC 57.104 29.630 12.92 0.00 0.00 2.90
2730 3851 9.902196 CCCAAAATATAAGAACGTTTTTACACT 57.098 29.630 12.92 1.60 0.00 3.55
2752 3873 6.467723 CTAGCATAGTGTCAAAAACGTTCT 57.532 37.500 0.00 0.00 32.85 3.01
2753 3874 5.751243 AGCATAGTGTCAAAAACGTTCTT 57.249 34.783 0.00 0.00 0.00 2.52
2754 3875 6.854496 AGCATAGTGTCAAAAACGTTCTTA 57.146 33.333 0.00 0.00 0.00 2.10
2755 3876 7.435068 AGCATAGTGTCAAAAACGTTCTTAT 57.565 32.000 0.00 0.00 0.00 1.73
2756 3877 8.542497 AGCATAGTGTCAAAAACGTTCTTATA 57.458 30.769 0.00 0.00 0.00 0.98
2757 3878 9.162764 AGCATAGTGTCAAAAACGTTCTTATAT 57.837 29.630 0.00 0.00 0.00 0.86
2758 3879 9.769093 GCATAGTGTCAAAAACGTTCTTATATT 57.231 29.630 0.00 0.00 0.00 1.28
2762 3883 9.458374 AGTGTCAAAAACGTTCTTATATTTTGG 57.542 29.630 15.53 0.00 39.94 3.28
2763 3884 8.696175 GTGTCAAAAACGTTCTTATATTTTGGG 58.304 33.333 15.53 0.00 39.94 4.12
2764 3885 8.630917 TGTCAAAAACGTTCTTATATTTTGGGA 58.369 29.630 15.53 4.35 39.94 4.37
2765 3886 8.908678 GTCAAAAACGTTCTTATATTTTGGGAC 58.091 33.333 15.53 7.20 39.94 4.46
2766 3887 8.630917 TCAAAAACGTTCTTATATTTTGGGACA 58.369 29.630 15.53 0.00 39.94 4.02
2767 3888 8.911662 CAAAAACGTTCTTATATTTTGGGACAG 58.088 33.333 0.00 0.00 42.39 3.51
2768 3889 7.989416 AAACGTTCTTATATTTTGGGACAGA 57.011 32.000 0.00 0.00 42.39 3.41
2769 3890 7.611213 AACGTTCTTATATTTTGGGACAGAG 57.389 36.000 0.00 0.00 42.39 3.35
2770 3891 6.113411 ACGTTCTTATATTTTGGGACAGAGG 58.887 40.000 0.00 0.00 42.39 3.69
2771 3892 5.527582 CGTTCTTATATTTTGGGACAGAGGG 59.472 44.000 0.00 0.00 42.39 4.30
2772 3893 6.631766 CGTTCTTATATTTTGGGACAGAGGGA 60.632 42.308 0.00 0.00 42.39 4.20
2810 3931 0.181114 TCCAGTCAGCAAGCACACTT 59.819 50.000 0.00 0.00 36.19 3.16
2815 3936 2.810274 AGTCAGCAAGCACACTTACATG 59.190 45.455 0.00 0.00 33.74 3.21
2860 3981 2.478134 GGCTAAGATAATCACGCTGCAG 59.522 50.000 10.11 10.11 0.00 4.41
2919 4040 6.964807 AGCATTATCATGTGCATTTCCTTA 57.035 33.333 8.54 0.00 43.63 2.69
2997 4159 6.363577 TGAACTTGAAACTGCTAAGACTTG 57.636 37.500 0.00 0.00 0.00 3.16
2998 4160 5.880332 TGAACTTGAAACTGCTAAGACTTGT 59.120 36.000 0.00 0.00 0.00 3.16
3053 4215 8.302515 AGATTTGAGCAAGTTCCAATATCATT 57.697 30.769 0.00 0.00 0.00 2.57
3054 4216 8.195436 AGATTTGAGCAAGTTCCAATATCATTG 58.805 33.333 0.00 0.00 0.00 2.82
3118 4281 3.410631 TTGGCGATTGGACTTCTGTTA 57.589 42.857 0.00 0.00 0.00 2.41
3140 4303 3.521560 TGCTTTAGCTGTTATGGAGTCG 58.478 45.455 0.00 0.00 42.66 4.18
3172 4335 7.140705 TGTCTGAACATTCATGAATTTGTGAC 58.859 34.615 18.41 19.51 36.46 3.67
3537 4706 6.956202 ATAAATATATACTCCCTCCGTCCG 57.044 41.667 0.00 0.00 0.00 4.79
3538 4707 2.795231 TATATACTCCCTCCGTCCGG 57.205 55.000 0.00 0.00 0.00 5.14
3539 4708 0.776176 ATATACTCCCTCCGTCCGGT 59.224 55.000 0.00 0.00 36.47 5.28
3540 4709 1.434188 TATACTCCCTCCGTCCGGTA 58.566 55.000 0.00 0.00 36.47 4.02
3541 4710 0.552848 ATACTCCCTCCGTCCGGTAA 59.447 55.000 0.00 0.00 36.47 2.85
3542 4711 0.331278 TACTCCCTCCGTCCGGTAAA 59.669 55.000 0.00 0.00 36.47 2.01
3543 4712 0.969409 ACTCCCTCCGTCCGGTAAAG 60.969 60.000 0.00 2.74 36.47 1.85
3544 4713 0.682209 CTCCCTCCGTCCGGTAAAGA 60.682 60.000 0.00 0.00 36.47 2.52
3545 4714 0.682209 TCCCTCCGTCCGGTAAAGAG 60.682 60.000 0.00 3.95 36.47 2.85
3546 4715 0.969409 CCCTCCGTCCGGTAAAGAGT 60.969 60.000 0.00 0.00 36.47 3.24
3547 4716 0.172803 CCTCCGTCCGGTAAAGAGTG 59.827 60.000 0.00 0.00 36.47 3.51
3548 4717 0.886563 CTCCGTCCGGTAAAGAGTGT 59.113 55.000 0.00 0.00 36.47 3.55
3549 4718 2.086869 CTCCGTCCGGTAAAGAGTGTA 58.913 52.381 0.00 0.00 36.47 2.90
3550 4719 1.812571 TCCGTCCGGTAAAGAGTGTAC 59.187 52.381 0.00 0.00 36.47 2.90
3551 4720 1.541147 CCGTCCGGTAAAGAGTGTACA 59.459 52.381 0.00 0.00 0.00 2.90
3552 4721 2.165030 CCGTCCGGTAAAGAGTGTACAT 59.835 50.000 0.00 0.00 0.00 2.29
3553 4722 3.432782 CGTCCGGTAAAGAGTGTACATC 58.567 50.000 0.00 0.00 0.00 3.06
3554 4723 3.128242 CGTCCGGTAAAGAGTGTACATCT 59.872 47.826 0.00 0.27 0.00 2.90
3555 4724 4.333649 CGTCCGGTAAAGAGTGTACATCTA 59.666 45.833 0.00 0.00 0.00 1.98
3556 4725 5.503683 CGTCCGGTAAAGAGTGTACATCTAG 60.504 48.000 0.00 0.00 0.00 2.43
3557 4726 5.587844 GTCCGGTAAAGAGTGTACATCTAGA 59.412 44.000 0.00 0.00 0.00 2.43
3558 4727 6.094603 GTCCGGTAAAGAGTGTACATCTAGAA 59.905 42.308 0.00 0.00 0.00 2.10
3559 4728 6.660521 TCCGGTAAAGAGTGTACATCTAGAAA 59.339 38.462 0.00 0.00 0.00 2.52
3560 4729 7.341256 TCCGGTAAAGAGTGTACATCTAGAAAT 59.659 37.037 0.00 0.00 0.00 2.17
3561 4730 7.980099 CCGGTAAAGAGTGTACATCTAGAAATT 59.020 37.037 0.00 0.00 0.00 1.82
3562 4731 9.367444 CGGTAAAGAGTGTACATCTAGAAATTT 57.633 33.333 0.00 0.00 0.00 1.82
3569 4738 9.871238 GAGTGTACATCTAGAAATTTTAGGACA 57.129 33.333 0.00 0.00 0.00 4.02
3585 4754 8.934023 TTTTAGGACAAATTATGGAGTTGAGT 57.066 30.769 0.00 0.00 36.83 3.41
3589 4758 8.934023 AGGACAAATTATGGAGTTGAGTAAAA 57.066 30.769 0.00 0.00 36.83 1.52
3590 4759 9.362151 AGGACAAATTATGGAGTTGAGTAAAAA 57.638 29.630 0.00 0.00 36.83 1.94
3611 4780 0.033781 TGCATTGGAAAGGTGCAAGC 59.966 50.000 0.00 0.00 44.99 4.01
3612 4781 0.671472 GCATTGGAAAGGTGCAAGCC 60.671 55.000 0.00 0.00 38.60 4.35
3613 4782 0.680618 CATTGGAAAGGTGCAAGCCA 59.319 50.000 0.00 0.00 38.60 4.75
3614 4783 0.681175 ATTGGAAAGGTGCAAGCCAC 59.319 50.000 0.00 0.00 38.60 5.01
3621 4790 4.730487 GTGCAAGCCACCATCTCT 57.270 55.556 0.00 0.00 38.55 3.10
3622 4791 2.475666 GTGCAAGCCACCATCTCTC 58.524 57.895 0.00 0.00 38.55 3.20
3623 4792 1.028868 GTGCAAGCCACCATCTCTCC 61.029 60.000 0.00 0.00 38.55 3.71
3624 4793 1.452833 GCAAGCCACCATCTCTCCC 60.453 63.158 0.00 0.00 0.00 4.30
3625 4794 1.225704 CAAGCCACCATCTCTCCCC 59.774 63.158 0.00 0.00 0.00 4.81
3626 4795 1.083706 AAGCCACCATCTCTCCCCT 59.916 57.895 0.00 0.00 0.00 4.79
3627 4796 0.985490 AAGCCACCATCTCTCCCCTC 60.985 60.000 0.00 0.00 0.00 4.30
3628 4797 1.383803 GCCACCATCTCTCCCCTCT 60.384 63.158 0.00 0.00 0.00 3.69
3629 4798 0.985490 GCCACCATCTCTCCCCTCTT 60.985 60.000 0.00 0.00 0.00 2.85
3630 4799 1.589414 CCACCATCTCTCCCCTCTTT 58.411 55.000 0.00 0.00 0.00 2.52
3631 4800 2.764269 CCACCATCTCTCCCCTCTTTA 58.236 52.381 0.00 0.00 0.00 1.85
3632 4801 3.115390 CCACCATCTCTCCCCTCTTTAA 58.885 50.000 0.00 0.00 0.00 1.52
3633 4802 3.718956 CCACCATCTCTCCCCTCTTTAAT 59.281 47.826 0.00 0.00 0.00 1.40
3634 4803 4.166919 CCACCATCTCTCCCCTCTTTAATT 59.833 45.833 0.00 0.00 0.00 1.40
3635 4804 5.369699 CCACCATCTCTCCCCTCTTTAATTA 59.630 44.000 0.00 0.00 0.00 1.40
3636 4805 6.292150 CACCATCTCTCCCCTCTTTAATTAC 58.708 44.000 0.00 0.00 0.00 1.89
3637 4806 5.369993 ACCATCTCTCCCCTCTTTAATTACC 59.630 44.000 0.00 0.00 0.00 2.85
3638 4807 5.221945 CCATCTCTCCCCTCTTTAATTACCC 60.222 48.000 0.00 0.00 0.00 3.69
3639 4808 4.967871 TCTCTCCCCTCTTTAATTACCCA 58.032 43.478 0.00 0.00 0.00 4.51
3640 4809 5.355711 TCTCTCCCCTCTTTAATTACCCAA 58.644 41.667 0.00 0.00 0.00 4.12
3641 4810 5.191124 TCTCTCCCCTCTTTAATTACCCAAC 59.809 44.000 0.00 0.00 0.00 3.77
3642 4811 4.228895 TCTCCCCTCTTTAATTACCCAACC 59.771 45.833 0.00 0.00 0.00 3.77
3643 4812 3.270169 TCCCCTCTTTAATTACCCAACCC 59.730 47.826 0.00 0.00 0.00 4.11
3644 4813 3.629025 CCCCTCTTTAATTACCCAACCCC 60.629 52.174 0.00 0.00 0.00 4.95
3645 4814 3.629025 CCCTCTTTAATTACCCAACCCCC 60.629 52.174 0.00 0.00 0.00 5.40
3646 4815 3.011934 CCTCTTTAATTACCCAACCCCCA 59.988 47.826 0.00 0.00 0.00 4.96
3647 4816 4.511294 CCTCTTTAATTACCCAACCCCCAA 60.511 45.833 0.00 0.00 0.00 4.12
3648 4817 5.277250 CTCTTTAATTACCCAACCCCCAAT 58.723 41.667 0.00 0.00 0.00 3.16
3649 4818 5.026790 TCTTTAATTACCCAACCCCCAATG 58.973 41.667 0.00 0.00 0.00 2.82
3650 4819 4.694280 TTAATTACCCAACCCCCAATGA 57.306 40.909 0.00 0.00 0.00 2.57
3651 4820 2.846665 ATTACCCAACCCCCAATGAG 57.153 50.000 0.00 0.00 0.00 2.90
3652 4821 0.040499 TTACCCAACCCCCAATGAGC 59.960 55.000 0.00 0.00 0.00 4.26
3653 4822 0.849094 TACCCAACCCCCAATGAGCT 60.849 55.000 0.00 0.00 0.00 4.09
3654 4823 0.849094 ACCCAACCCCCAATGAGCTA 60.849 55.000 0.00 0.00 0.00 3.32
3655 4824 0.334676 CCCAACCCCCAATGAGCTAA 59.665 55.000 0.00 0.00 0.00 3.09
3656 4825 1.686115 CCCAACCCCCAATGAGCTAAG 60.686 57.143 0.00 0.00 0.00 2.18
3657 4826 1.005924 CCAACCCCCAATGAGCTAAGT 59.994 52.381 0.00 0.00 0.00 2.24
3658 4827 2.094675 CAACCCCCAATGAGCTAAGTG 58.905 52.381 0.00 0.00 0.00 3.16
3659 4828 0.034089 ACCCCCAATGAGCTAAGTGC 60.034 55.000 0.00 0.00 43.29 4.40
3660 4829 0.034186 CCCCCAATGAGCTAAGTGCA 60.034 55.000 0.00 0.00 45.94 4.57
3661 4830 1.410648 CCCCCAATGAGCTAAGTGCAT 60.411 52.381 0.00 0.00 45.94 3.96
3662 4831 1.679680 CCCCAATGAGCTAAGTGCATG 59.320 52.381 0.00 0.00 45.94 4.06
3663 4832 2.372264 CCCAATGAGCTAAGTGCATGT 58.628 47.619 0.00 0.00 45.94 3.21
3664 4833 3.544684 CCCAATGAGCTAAGTGCATGTA 58.455 45.455 0.00 0.00 45.94 2.29
3665 4834 3.313526 CCCAATGAGCTAAGTGCATGTAC 59.686 47.826 5.71 5.71 45.94 2.90
3666 4835 3.313526 CCAATGAGCTAAGTGCATGTACC 59.686 47.826 10.59 0.00 45.94 3.34
3667 4836 3.912496 ATGAGCTAAGTGCATGTACCA 57.088 42.857 10.59 0.61 45.94 3.25
3668 4837 3.912496 TGAGCTAAGTGCATGTACCAT 57.088 42.857 10.59 2.78 45.94 3.55
3669 4838 3.534554 TGAGCTAAGTGCATGTACCATG 58.465 45.455 10.59 2.15 45.94 3.66
3670 4839 3.055167 TGAGCTAAGTGCATGTACCATGT 60.055 43.478 10.59 0.00 45.94 3.21
3671 4840 3.273434 AGCTAAGTGCATGTACCATGTG 58.727 45.455 10.59 0.00 45.94 3.21
3672 4841 3.055167 AGCTAAGTGCATGTACCATGTGA 60.055 43.478 10.59 0.00 45.94 3.58
3673 4842 3.879295 GCTAAGTGCATGTACCATGTGAT 59.121 43.478 10.59 0.00 42.31 3.06
3674 4843 4.260907 GCTAAGTGCATGTACCATGTGATG 60.261 45.833 10.59 0.00 42.31 3.07
3675 4844 3.632643 AGTGCATGTACCATGTGATGA 57.367 42.857 10.59 0.00 0.00 2.92
3676 4845 3.538591 AGTGCATGTACCATGTGATGAG 58.461 45.455 10.59 0.00 0.00 2.90
3677 4846 3.198417 AGTGCATGTACCATGTGATGAGA 59.802 43.478 10.59 0.00 0.00 3.27
3678 4847 3.558829 GTGCATGTACCATGTGATGAGAG 59.441 47.826 1.96 0.00 0.00 3.20
3679 4848 3.451902 TGCATGTACCATGTGATGAGAGA 59.548 43.478 6.13 0.00 0.00 3.10
3680 4849 4.102054 TGCATGTACCATGTGATGAGAGAT 59.898 41.667 6.13 0.00 0.00 2.75
3681 4850 5.305128 TGCATGTACCATGTGATGAGAGATA 59.695 40.000 6.13 0.00 0.00 1.98
3682 4851 6.013984 TGCATGTACCATGTGATGAGAGATAT 60.014 38.462 6.13 0.00 0.00 1.63
3683 4852 6.313164 GCATGTACCATGTGATGAGAGATATG 59.687 42.308 6.13 0.00 0.00 1.78
3684 4853 6.983906 TGTACCATGTGATGAGAGATATGT 57.016 37.500 0.00 0.00 0.00 2.29
3685 4854 7.365497 TGTACCATGTGATGAGAGATATGTT 57.635 36.000 0.00 0.00 0.00 2.71
3686 4855 7.795047 TGTACCATGTGATGAGAGATATGTTT 58.205 34.615 0.00 0.00 0.00 2.83
3687 4856 8.267183 TGTACCATGTGATGAGAGATATGTTTT 58.733 33.333 0.00 0.00 0.00 2.43
3688 4857 7.798596 ACCATGTGATGAGAGATATGTTTTC 57.201 36.000 0.00 0.00 0.00 2.29
3689 4858 6.769822 ACCATGTGATGAGAGATATGTTTTCC 59.230 38.462 0.00 0.00 0.00 3.13
3690 4859 6.206243 CCATGTGATGAGAGATATGTTTTCCC 59.794 42.308 0.00 0.00 0.00 3.97
3691 4860 6.312141 TGTGATGAGAGATATGTTTTCCCA 57.688 37.500 0.00 0.00 0.00 4.37
3692 4861 6.115446 TGTGATGAGAGATATGTTTTCCCAC 58.885 40.000 0.00 0.00 0.00 4.61
3693 4862 6.070021 TGTGATGAGAGATATGTTTTCCCACT 60.070 38.462 0.00 0.00 0.00 4.00
3694 4863 6.825721 GTGATGAGAGATATGTTTTCCCACTT 59.174 38.462 0.00 0.00 0.00 3.16
3695 4864 7.337942 GTGATGAGAGATATGTTTTCCCACTTT 59.662 37.037 0.00 0.00 0.00 2.66
3696 4865 8.548025 TGATGAGAGATATGTTTTCCCACTTTA 58.452 33.333 0.00 0.00 0.00 1.85
3697 4866 9.396022 GATGAGAGATATGTTTTCCCACTTTAA 57.604 33.333 0.00 0.00 0.00 1.52
3698 4867 9.753674 ATGAGAGATATGTTTTCCCACTTTAAA 57.246 29.630 0.00 0.00 0.00 1.52
3699 4868 9.231297 TGAGAGATATGTTTTCCCACTTTAAAG 57.769 33.333 13.76 13.76 0.00 1.85
3700 4869 9.232473 GAGAGATATGTTTTCCCACTTTAAAGT 57.768 33.333 15.22 15.22 40.60 2.66
3715 4884 7.396540 ACTTTAAAGTGCATTGGGAAGATAG 57.603 36.000 19.94 0.00 37.98 2.08
3716 4885 6.378280 ACTTTAAAGTGCATTGGGAAGATAGG 59.622 38.462 19.94 0.00 37.98 2.57
3717 4886 4.591321 AAAGTGCATTGGGAAGATAGGA 57.409 40.909 0.00 0.00 0.00 2.94
3718 4887 3.853355 AGTGCATTGGGAAGATAGGAG 57.147 47.619 0.00 0.00 0.00 3.69
3719 4888 3.118531 AGTGCATTGGGAAGATAGGAGT 58.881 45.455 0.00 0.00 0.00 3.85
3720 4889 4.298626 AGTGCATTGGGAAGATAGGAGTA 58.701 43.478 0.00 0.00 0.00 2.59
3721 4890 4.101741 AGTGCATTGGGAAGATAGGAGTAC 59.898 45.833 0.00 0.00 0.00 2.73
3722 4891 4.037222 TGCATTGGGAAGATAGGAGTACA 58.963 43.478 0.00 0.00 0.00 2.90
3723 4892 4.141711 TGCATTGGGAAGATAGGAGTACAC 60.142 45.833 0.00 0.00 0.00 2.90
3724 4893 4.101741 GCATTGGGAAGATAGGAGTACACT 59.898 45.833 0.00 0.00 0.00 3.55
3725 4894 5.740513 GCATTGGGAAGATAGGAGTACACTC 60.741 48.000 0.49 0.49 42.14 3.51
3726 4895 4.883021 TGGGAAGATAGGAGTACACTCT 57.117 45.455 9.15 0.00 42.48 3.24
3727 4896 5.208294 TGGGAAGATAGGAGTACACTCTT 57.792 43.478 9.15 4.40 42.48 2.85
3728 4897 5.590818 TGGGAAGATAGGAGTACACTCTTT 58.409 41.667 9.15 1.66 42.48 2.52
3729 4898 6.023603 TGGGAAGATAGGAGTACACTCTTTT 58.976 40.000 9.15 0.00 42.48 2.27
3730 4899 6.070767 TGGGAAGATAGGAGTACACTCTTTTG 60.071 42.308 9.15 0.00 42.48 2.44
3731 4900 6.070710 GGGAAGATAGGAGTACACTCTTTTGT 60.071 42.308 9.15 0.00 42.48 2.83
3732 4901 6.814146 GGAAGATAGGAGTACACTCTTTTGTG 59.186 42.308 9.15 0.00 42.48 3.33
3733 4902 6.287589 AGATAGGAGTACACTCTTTTGTGG 57.712 41.667 9.15 0.00 42.48 4.17
3734 4903 6.017192 AGATAGGAGTACACTCTTTTGTGGA 58.983 40.000 9.15 0.00 42.48 4.02
3743 4912 6.966435 ACACTCTTTTGTGGACAAATTTTG 57.034 33.333 7.59 7.59 44.30 2.44
3744 4913 6.696411 ACACTCTTTTGTGGACAAATTTTGA 58.304 32.000 15.81 2.89 44.30 2.69
3745 4914 7.158021 ACACTCTTTTGTGGACAAATTTTGAA 58.842 30.769 15.81 0.00 44.30 2.69
3746 4915 7.331687 ACACTCTTTTGTGGACAAATTTTGAAG 59.668 33.333 15.81 7.05 44.30 3.02
3747 4916 6.313658 ACTCTTTTGTGGACAAATTTTGAAGC 59.686 34.615 15.81 4.84 44.30 3.86
3748 4917 6.405538 TCTTTTGTGGACAAATTTTGAAGCT 58.594 32.000 15.81 0.00 44.30 3.74
3749 4918 7.551585 TCTTTTGTGGACAAATTTTGAAGCTA 58.448 30.769 15.81 0.72 44.30 3.32
3750 4919 7.706179 TCTTTTGTGGACAAATTTTGAAGCTAG 59.294 33.333 15.81 3.47 44.30 3.42
3751 4920 6.707440 TTGTGGACAAATTTTGAAGCTAGA 57.293 33.333 15.81 0.00 32.11 2.43
3752 4921 6.899393 TGTGGACAAATTTTGAAGCTAGAT 57.101 33.333 15.81 0.00 0.00 1.98
3753 4922 6.680810 TGTGGACAAATTTTGAAGCTAGATG 58.319 36.000 15.81 0.00 0.00 2.90
3754 4923 6.265196 TGTGGACAAATTTTGAAGCTAGATGT 59.735 34.615 15.81 0.00 0.00 3.06
3755 4924 7.446931 TGTGGACAAATTTTGAAGCTAGATGTA 59.553 33.333 15.81 0.00 0.00 2.29
3756 4925 7.750903 GTGGACAAATTTTGAAGCTAGATGTAC 59.249 37.037 15.81 0.00 0.00 2.90
3757 4926 7.446931 TGGACAAATTTTGAAGCTAGATGTACA 59.553 33.333 15.81 0.00 0.00 2.90
3758 4927 7.750903 GGACAAATTTTGAAGCTAGATGTACAC 59.249 37.037 15.81 0.00 0.00 2.90
3759 4928 8.396272 ACAAATTTTGAAGCTAGATGTACACT 57.604 30.769 15.81 0.13 0.00 3.55
3760 4929 8.507249 ACAAATTTTGAAGCTAGATGTACACTC 58.493 33.333 15.81 0.00 0.00 3.51
3761 4930 8.725148 CAAATTTTGAAGCTAGATGTACACTCT 58.275 33.333 0.00 5.42 0.00 3.24
3762 4931 8.854614 AATTTTGAAGCTAGATGTACACTCTT 57.145 30.769 0.00 0.00 0.00 2.85
3763 4932 7.891183 TTTTGAAGCTAGATGTACACTCTTC 57.109 36.000 0.00 7.46 0.00 2.87
3764 4933 6.590234 TTGAAGCTAGATGTACACTCTTCA 57.410 37.500 16.38 16.38 37.32 3.02
3765 4934 5.955488 TGAAGCTAGATGTACACTCTTCAC 58.045 41.667 16.38 7.68 35.12 3.18
3766 4935 4.993029 AGCTAGATGTACACTCTTCACC 57.007 45.455 0.00 0.00 0.00 4.02
3767 4936 3.378742 AGCTAGATGTACACTCTTCACCG 59.621 47.826 0.00 0.00 0.00 4.94
3768 4937 3.489398 GCTAGATGTACACTCTTCACCGG 60.489 52.174 0.00 0.00 0.00 5.28
3769 4938 2.803956 AGATGTACACTCTTCACCGGA 58.196 47.619 9.46 0.00 0.00 5.14
3770 4939 2.492484 AGATGTACACTCTTCACCGGAC 59.508 50.000 9.46 0.00 0.00 4.79
3771 4940 0.594602 TGTACACTCTTCACCGGACG 59.405 55.000 9.46 0.00 0.00 4.79
3772 4941 0.109412 GTACACTCTTCACCGGACGG 60.109 60.000 9.46 9.56 42.03 4.79
3773 4942 0.250858 TACACTCTTCACCGGACGGA 60.251 55.000 18.80 0.00 38.96 4.69
3774 4943 1.213013 CACTCTTCACCGGACGGAG 59.787 63.158 18.80 10.03 38.96 4.63
3775 4944 1.977544 ACTCTTCACCGGACGGAGG 60.978 63.158 18.80 9.15 38.96 4.30
3776 4945 2.678934 TCTTCACCGGACGGAGGG 60.679 66.667 18.80 6.62 38.96 4.30
3777 4946 2.678934 CTTCACCGGACGGAGGGA 60.679 66.667 18.80 8.89 38.96 4.20
3778 4947 2.678934 TTCACCGGACGGAGGGAG 60.679 66.667 18.80 2.08 38.96 4.30
3932 5114 6.878923 CCTATGTCATTTACTTCTGTGTTGGA 59.121 38.462 0.00 0.00 0.00 3.53
3933 5115 6.560253 ATGTCATTTACTTCTGTGTTGGAC 57.440 37.500 0.00 0.00 0.00 4.02
3934 5116 5.680619 TGTCATTTACTTCTGTGTTGGACT 58.319 37.500 0.00 0.00 0.00 3.85
3935 5117 5.527214 TGTCATTTACTTCTGTGTTGGACTG 59.473 40.000 0.00 0.00 0.00 3.51
3936 5118 5.527582 GTCATTTACTTCTGTGTTGGACTGT 59.472 40.000 0.00 0.00 0.00 3.55
3937 5119 6.038271 GTCATTTACTTCTGTGTTGGACTGTT 59.962 38.462 0.00 0.00 0.00 3.16
3938 5120 5.811399 TTTACTTCTGTGTTGGACTGTTG 57.189 39.130 0.00 0.00 0.00 3.33
3939 5121 2.643551 ACTTCTGTGTTGGACTGTTGG 58.356 47.619 0.00 0.00 0.00 3.77
3998 5180 3.575965 ACAATTTCATCGGCTTTGTCC 57.424 42.857 0.00 0.00 0.00 4.02
4074 5256 5.221501 ACAAATTACTGACAATTGCCTTGCT 60.222 36.000 5.05 0.00 38.50 3.91
4095 5277 8.982091 TTGCTGTAGTAGTATGATCTCTTACT 57.018 34.615 9.78 9.78 39.31 2.24
4304 5522 4.604114 CGAAGCATCAGCAGGTCA 57.396 55.556 0.00 0.00 45.49 4.02
4305 5523 2.084844 CGAAGCATCAGCAGGTCAC 58.915 57.895 0.00 0.00 45.49 3.67
4306 5524 1.364626 CGAAGCATCAGCAGGTCACC 61.365 60.000 0.00 0.00 45.49 4.02
4307 5525 0.035630 GAAGCATCAGCAGGTCACCT 60.036 55.000 0.00 0.00 45.49 4.00
4308 5526 0.035630 AAGCATCAGCAGGTCACCTC 60.036 55.000 0.00 0.00 45.49 3.85
4309 5527 1.451028 GCATCAGCAGGTCACCTCC 60.451 63.158 0.00 0.00 41.58 4.30
4310 5528 1.153489 CATCAGCAGGTCACCTCCG 60.153 63.158 0.00 0.00 0.00 4.63
4311 5529 3.023949 ATCAGCAGGTCACCTCCGC 62.024 63.158 0.00 0.00 0.00 5.54
4312 5530 4.767255 CAGCAGGTCACCTCCGCC 62.767 72.222 0.00 0.00 0.00 6.13
4314 5532 4.459089 GCAGGTCACCTCCGCCTC 62.459 72.222 0.00 0.00 0.00 4.70
4315 5533 3.775654 CAGGTCACCTCCGCCTCC 61.776 72.222 0.00 0.00 0.00 4.30
4316 5534 3.999285 AGGTCACCTCCGCCTCCT 61.999 66.667 0.00 0.00 0.00 3.69
4317 5535 3.462678 GGTCACCTCCGCCTCCTC 61.463 72.222 0.00 0.00 0.00 3.71
4318 5536 3.827898 GTCACCTCCGCCTCCTCG 61.828 72.222 0.00 0.00 0.00 4.63
4322 5540 4.821589 CCTCCGCCTCCTCGCAAC 62.822 72.222 0.00 0.00 0.00 4.17
4323 5541 4.069232 CTCCGCCTCCTCGCAACA 62.069 66.667 0.00 0.00 0.00 3.33
4324 5542 3.997064 CTCCGCCTCCTCGCAACAG 62.997 68.421 0.00 0.00 0.00 3.16
4325 5543 4.069232 CCGCCTCCTCGCAACAGA 62.069 66.667 0.00 0.00 0.00 3.41
4326 5544 2.048222 CGCCTCCTCGCAACAGAA 60.048 61.111 0.00 0.00 0.00 3.02
4327 5545 2.097038 CGCCTCCTCGCAACAGAAG 61.097 63.158 0.00 0.00 0.00 2.85
4328 5546 2.394563 GCCTCCTCGCAACAGAAGC 61.395 63.158 0.00 0.00 0.00 3.86
4329 5547 1.004560 CCTCCTCGCAACAGAAGCA 60.005 57.895 0.00 0.00 0.00 3.91
4330 5548 0.392193 CCTCCTCGCAACAGAAGCAT 60.392 55.000 0.00 0.00 0.00 3.79
4331 5549 1.005340 CTCCTCGCAACAGAAGCATC 58.995 55.000 0.00 0.00 0.00 3.91
4332 5550 0.321346 TCCTCGCAACAGAAGCATCA 59.679 50.000 0.00 0.00 0.00 3.07
4333 5551 0.725686 CCTCGCAACAGAAGCATCAG 59.274 55.000 0.00 0.00 0.00 2.90
4334 5552 0.096628 CTCGCAACAGAAGCATCAGC 59.903 55.000 0.00 0.00 42.56 4.26
4335 5553 0.603439 TCGCAACAGAAGCATCAGCA 60.603 50.000 0.00 0.00 45.49 4.41
4336 5554 0.179197 CGCAACAGAAGCATCAGCAG 60.179 55.000 0.00 0.00 45.49 4.24
4337 5555 0.170561 GCAACAGAAGCATCAGCAGG 59.829 55.000 0.00 0.00 45.49 4.85
4338 5556 1.531423 CAACAGAAGCATCAGCAGGT 58.469 50.000 0.00 0.00 45.49 4.00
4355 5573 4.988716 TCACCACCGCCTCCTCGT 62.989 66.667 0.00 0.00 0.00 4.18
4573 5791 1.287425 CGGCCGAGTATTGTTCTTCC 58.713 55.000 24.07 0.00 0.00 3.46
4819 6048 2.797156 GAGCCACTATTACGCAGTCATG 59.203 50.000 0.00 0.00 43.93 3.07
4864 6093 5.222151 TGACTATCTAGGCAGGTACTAGCAT 60.222 44.000 11.20 7.29 36.14 3.79
4873 6102 3.187700 CAGGTACTAGCATGGAACGAAC 58.812 50.000 0.00 0.00 36.02 3.95
4877 6106 4.034048 GGTACTAGCATGGAACGAACATTG 59.966 45.833 0.00 0.00 0.00 2.82
4886 6115 6.183360 GCATGGAACGAACATTGAAAAGATTC 60.183 38.462 0.00 0.00 36.04 2.52
4887 6116 6.633500 TGGAACGAACATTGAAAAGATTCT 57.367 33.333 0.00 0.00 36.48 2.40
4901 6130 9.676861 TTGAAAAGATTCTACATCATGATCTGT 57.323 29.630 4.86 6.19 36.48 3.41
4965 6201 0.883833 GTGAGGACGTCCCGTTTCTA 59.116 55.000 30.82 9.75 41.37 2.10
5012 6248 1.404315 GGAGTGGACTGTTCGGACATC 60.404 57.143 0.00 0.00 34.72 3.06
5024 6260 1.737236 TCGGACATCTTTTTGGCATCG 59.263 47.619 0.00 0.00 0.00 3.84
5031 6267 1.265635 TCTTTTTGGCATCGAACACCG 59.734 47.619 0.00 0.00 40.25 4.94
5034 6270 0.035036 TTTGGCATCGAACACCGGTA 59.965 50.000 6.87 0.00 39.14 4.02
5081 6317 1.678627 CACCGGTCCACAATTTTGTCA 59.321 47.619 2.59 0.00 39.91 3.58
5088 6324 4.399303 GGTCCACAATTTTGTCAGGATAGG 59.601 45.833 5.97 0.00 39.91 2.57
5111 6347 2.094078 CCGCATGTTTGAAATCCCACAT 60.094 45.455 0.00 0.00 0.00 3.21
5155 6394 6.378280 GGTCCACAATTTTGTCTGGATAGATT 59.622 38.462 6.07 0.00 39.91 2.40
5180 6419 4.501229 GCATGTCTGAAATCCCACAAAACA 60.501 41.667 0.00 0.00 0.00 2.83
5200 6439 1.985895 AGAAGTAAACACAGGGGAGGG 59.014 52.381 0.00 0.00 0.00 4.30
5208 6447 1.542375 ACAGGGGAGGGTTGCAGAT 60.542 57.895 0.00 0.00 0.00 2.90
5253 6492 0.532862 CTGACACGCTTGGTCCACTT 60.533 55.000 0.00 0.00 34.36 3.16
5268 6507 5.251932 TGGTCCACTTAAAATACCTCATCCA 59.748 40.000 0.00 0.00 0.00 3.41
5272 6511 7.610305 GTCCACTTAAAATACCTCATCCAAAGA 59.390 37.037 0.00 0.00 0.00 2.52
5273 6512 7.829211 TCCACTTAAAATACCTCATCCAAAGAG 59.171 37.037 0.00 0.00 0.00 2.85
5290 6529 2.672996 GGGCACGGTGTTGCAGAT 60.673 61.111 10.24 0.00 44.94 2.90
5294 6533 2.672996 ACGGTGTTGCAGATGCCC 60.673 61.111 1.72 0.00 41.18 5.36
5303 6542 2.123428 GCAGATGCCCGGCTTCATT 61.123 57.895 23.41 4.91 35.57 2.57
5305 6544 1.033746 CAGATGCCCGGCTTCATTGT 61.034 55.000 23.41 3.92 35.57 2.71
5322 6561 2.479566 TGTGCCTGTTTTGCCAAAAA 57.520 40.000 3.79 0.00 32.82 1.94
5323 6562 2.354259 TGTGCCTGTTTTGCCAAAAAG 58.646 42.857 3.79 4.94 35.96 2.27
5324 6563 2.289945 TGTGCCTGTTTTGCCAAAAAGT 60.290 40.909 3.79 0.00 35.96 2.66
5329 6568 5.649831 TGCCTGTTTTGCCAAAAAGTAAAAT 59.350 32.000 3.79 0.00 35.96 1.82
5404 6654 9.398170 CAAGTATGTAAAAAGTTTCATCAGGTG 57.602 33.333 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 6.739112 TCGTGAAACTATGTGGATGATCTAG 58.261 40.000 0.00 0.00 31.75 2.43
45 46 6.709018 TCGTGAAACTATGTGGATGATCTA 57.291 37.500 0.00 0.00 31.75 1.98
137 138 4.096382 GTGTTCAACATATGGGATCGCTTT 59.904 41.667 11.46 1.47 0.00 3.51
139 140 3.206150 GTGTTCAACATATGGGATCGCT 58.794 45.455 11.46 0.00 0.00 4.93
140 141 2.942376 TGTGTTCAACATATGGGATCGC 59.058 45.455 7.80 2.14 32.36 4.58
251 254 1.131126 GAGTTCATGACCATGCCAACG 59.869 52.381 0.00 0.00 38.65 4.10
252 255 2.161855 TGAGTTCATGACCATGCCAAC 58.838 47.619 0.00 5.94 38.65 3.77
253 256 2.583024 TGAGTTCATGACCATGCCAA 57.417 45.000 0.00 0.00 38.65 4.52
261 264 6.031751 ACTAAGAGGTCTTGAGTTCATGAC 57.968 41.667 15.85 15.85 45.09 3.06
262 265 6.459066 CAACTAAGAGGTCTTGAGTTCATGA 58.541 40.000 2.32 0.00 37.40 3.07
263 266 5.641209 CCAACTAAGAGGTCTTGAGTTCATG 59.359 44.000 2.32 0.00 37.40 3.07
264 267 5.544176 TCCAACTAAGAGGTCTTGAGTTCAT 59.456 40.000 2.32 0.00 37.40 2.57
265 268 4.899457 TCCAACTAAGAGGTCTTGAGTTCA 59.101 41.667 2.32 0.00 37.40 3.18
266 269 5.470047 TCCAACTAAGAGGTCTTGAGTTC 57.530 43.478 2.32 0.00 37.40 3.01
267 270 5.888982 TTCCAACTAAGAGGTCTTGAGTT 57.111 39.130 2.32 5.85 37.40 3.01
268 271 6.070710 GGTATTCCAACTAAGAGGTCTTGAGT 60.071 42.308 2.32 0.47 37.40 3.41
269 272 6.070767 TGGTATTCCAACTAAGAGGTCTTGAG 60.071 42.308 2.32 0.00 41.25 3.02
270 273 5.783360 TGGTATTCCAACTAAGAGGTCTTGA 59.217 40.000 2.32 0.00 41.25 3.02
271 274 6.049955 TGGTATTCCAACTAAGAGGTCTTG 57.950 41.667 2.32 0.00 41.25 3.02
302 1058 2.885135 TGAGTTGGTTGGAGCATGAT 57.115 45.000 0.00 0.00 0.00 2.45
308 1064 4.392940 ACTTCTGAATGAGTTGGTTGGAG 58.607 43.478 0.00 0.00 0.00 3.86
319 1075 4.220602 TCATCAGTTCGGACTTCTGAATGA 59.779 41.667 0.00 8.81 42.55 2.57
326 1082 4.156922 TCTCTCTTCATCAGTTCGGACTTC 59.843 45.833 0.00 0.00 32.54 3.01
441 1210 4.470602 AGAAAAATCGTCTGGGGTCTTTT 58.529 39.130 0.00 0.00 0.00 2.27
451 1220 5.239525 CAGTTCAAGGGAAGAAAAATCGTCT 59.760 40.000 0.00 0.00 32.62 4.18
465 1234 1.003718 GTCCGGGACAGTTCAAGGG 60.004 63.158 22.10 0.00 32.09 3.95
468 1237 0.245539 GATCGTCCGGGACAGTTCAA 59.754 55.000 25.80 5.11 32.09 2.69
490 1259 2.758089 GCGGATGAGCTGCTGGTTG 61.758 63.158 7.01 0.00 45.70 3.77
557 1326 1.410224 GGGATGTGATTGGGGAAGACC 60.410 57.143 0.00 0.00 39.11 3.85
558 1327 1.284785 TGGGATGTGATTGGGGAAGAC 59.715 52.381 0.00 0.00 0.00 3.01
559 1328 1.679981 TGGGATGTGATTGGGGAAGA 58.320 50.000 0.00 0.00 0.00 2.87
560 1329 2.590821 GATGGGATGTGATTGGGGAAG 58.409 52.381 0.00 0.00 0.00 3.46
562 1331 0.852842 GGATGGGATGTGATTGGGGA 59.147 55.000 0.00 0.00 0.00 4.81
564 1333 0.557238 TGGGATGGGATGTGATTGGG 59.443 55.000 0.00 0.00 0.00 4.12
565 1334 2.034124 GTTGGGATGGGATGTGATTGG 58.966 52.381 0.00 0.00 0.00 3.16
566 1335 2.034124 GGTTGGGATGGGATGTGATTG 58.966 52.381 0.00 0.00 0.00 2.67
567 1336 1.062962 GGGTTGGGATGGGATGTGATT 60.063 52.381 0.00 0.00 0.00 2.57
568 1337 0.557729 GGGTTGGGATGGGATGTGAT 59.442 55.000 0.00 0.00 0.00 3.06
569 1338 0.848648 TGGGTTGGGATGGGATGTGA 60.849 55.000 0.00 0.00 0.00 3.58
570 1339 0.040942 TTGGGTTGGGATGGGATGTG 59.959 55.000 0.00 0.00 0.00 3.21
571 1340 1.018031 ATTGGGTTGGGATGGGATGT 58.982 50.000 0.00 0.00 0.00 3.06
572 1341 3.326946 TTATTGGGTTGGGATGGGATG 57.673 47.619 0.00 0.00 0.00 3.51
573 1342 3.653164 GTTTATTGGGTTGGGATGGGAT 58.347 45.455 0.00 0.00 0.00 3.85
574 1343 2.621929 CGTTTATTGGGTTGGGATGGGA 60.622 50.000 0.00 0.00 0.00 4.37
575 1344 1.754226 CGTTTATTGGGTTGGGATGGG 59.246 52.381 0.00 0.00 0.00 4.00
576 1345 2.687935 CTCGTTTATTGGGTTGGGATGG 59.312 50.000 0.00 0.00 0.00 3.51
615 1384 2.027625 GTTGACGCCTCGGAACCAG 61.028 63.158 0.00 0.00 0.00 4.00
616 1385 2.029964 GTTGACGCCTCGGAACCA 59.970 61.111 0.00 0.00 0.00 3.67
617 1386 2.741211 GGTTGACGCCTCGGAACC 60.741 66.667 6.65 6.65 36.73 3.62
618 1387 2.726822 AAGGGTTGACGCCTCGGAAC 62.727 60.000 0.00 0.00 0.00 3.62
619 1388 2.444700 GAAGGGTTGACGCCTCGGAA 62.445 60.000 0.00 0.00 0.00 4.30
620 1389 2.920912 AAGGGTTGACGCCTCGGA 60.921 61.111 0.00 0.00 0.00 4.55
735 1505 4.957684 ATCGGATGGCGAGCGCTG 62.958 66.667 18.48 8.79 41.60 5.18
747 1517 3.467226 GGGGACTGGCGAATCGGA 61.467 66.667 4.35 0.00 0.00 4.55
806 1576 3.735181 GGAAGCCGAAGATACGTGT 57.265 52.632 0.00 0.00 0.00 4.49
860 1642 0.109919 AAAATTCTCGCGTTTCGGGC 60.110 50.000 5.77 0.00 38.90 6.13
898 1680 3.010027 TGCTAATCTCCACCCACAAATGA 59.990 43.478 0.00 0.00 0.00 2.57
962 1910 3.315191 CCTGCAAGAGGAAGAACGAAAAA 59.685 43.478 0.00 0.00 46.33 1.94
963 1911 2.878406 CCTGCAAGAGGAAGAACGAAAA 59.122 45.455 0.00 0.00 46.33 2.29
1044 1992 2.510918 TCGTCCTCGATCTCGCGT 60.511 61.111 5.77 0.00 41.35 6.01
1138 2086 4.095782 TCGTGAAAATAAGCAAGGGTATGC 59.904 41.667 0.00 0.00 46.78 3.14
1273 2223 3.084070 GCAAATAGCCAGCATACCAAC 57.916 47.619 0.00 0.00 37.23 3.77
1425 2375 4.826556 ACAAACTAAAGGCAAAACAAGCA 58.173 34.783 0.00 0.00 0.00 3.91
1437 2387 5.806286 TGTGAGCGAAGAAACAAACTAAAG 58.194 37.500 0.00 0.00 0.00 1.85
1442 2392 4.351192 ACAATGTGAGCGAAGAAACAAAC 58.649 39.130 0.00 0.00 0.00 2.93
1517 2467 4.381079 GCATGGCCCGTTGAACTTAAATTA 60.381 41.667 0.00 0.00 0.00 1.40
1518 2468 3.616317 GCATGGCCCGTTGAACTTAAATT 60.616 43.478 0.00 0.00 0.00 1.82
1535 2485 3.272574 AGAAGACCTGTACATGCATGG 57.727 47.619 29.41 14.59 0.00 3.66
1573 2523 8.055181 CCACATTATATCCCTTTAGCATATGGT 58.945 37.037 12.78 12.78 0.00 3.55
1745 2695 1.071699 TCACTGGCAGTCCAACCTAAC 59.928 52.381 19.13 0.00 42.91 2.34
1749 2699 1.589716 GCATCACTGGCAGTCCAACC 61.590 60.000 19.13 1.58 42.91 3.77
1783 2734 5.313712 AGTTCCCACATTAACTGTTGGTAG 58.686 41.667 2.69 0.00 40.71 3.18
1801 2752 2.187163 GAGCCCTGCGGTAGTTCC 59.813 66.667 0.00 0.00 0.00 3.62
1813 2764 4.846779 TCAAAAATGTACAACTGAGCCC 57.153 40.909 0.00 0.00 0.00 5.19
1827 2778 5.888161 ACTCCTGACTGTTGAGTTCAAAAAT 59.112 36.000 0.00 0.00 35.93 1.82
1944 2895 3.270027 CGCAAATACAAGATCCACCAGA 58.730 45.455 0.00 0.00 0.00 3.86
2063 3014 7.361371 CGCACAAAAACATATAGGAAGTAACCA 60.361 37.037 0.00 0.00 0.00 3.67
2065 3016 7.480542 CACGCACAAAAACATATAGGAAGTAAC 59.519 37.037 0.00 0.00 0.00 2.50
2159 3153 3.056322 AGTCAATGAAAGCAAATCCTGGC 60.056 43.478 0.00 0.00 0.00 4.85
2183 3177 2.105128 GCGTCCCTGGTCTCATCG 59.895 66.667 0.00 0.00 0.00 3.84
2252 3248 9.367160 TGGAGATAGTGATACAGAATCAACATA 57.633 33.333 0.00 0.00 46.17 2.29
2339 3335 4.120589 GGACGAGGTTAAGGATCAATGAC 58.879 47.826 0.00 0.00 0.00 3.06
2518 3514 3.381272 TCTCTGAAAAGGCAACACAAAGG 59.619 43.478 0.00 0.00 41.41 3.11
2523 3519 6.319141 AGTTAATCTCTGAAAAGGCAACAC 57.681 37.500 0.00 0.00 41.41 3.32
2574 3570 6.198966 GGTTTCAGTGCAAATACAGTTCTTTG 59.801 38.462 0.00 4.61 35.84 2.77
2593 3589 8.945193 ACAGGGCTAATATATTTCTAGGTTTCA 58.055 33.333 2.68 0.00 0.00 2.69
2631 3627 2.019249 CTGGTCATGGTCGCAATTCAT 58.981 47.619 0.00 0.00 0.00 2.57
2675 3671 5.070580 AGGGAGTACATTGCTACAGGATTAC 59.929 44.000 0.00 0.00 0.00 1.89
2691 3812 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
2692 3813 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2693 3814 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2694 3815 4.347000 TCTTATATTTTGGGACGGAGGGAG 59.653 45.833 0.00 0.00 0.00 4.30
2695 3816 4.300345 TCTTATATTTTGGGACGGAGGGA 58.700 43.478 0.00 0.00 0.00 4.20
2696 3817 4.699925 TCTTATATTTTGGGACGGAGGG 57.300 45.455 0.00 0.00 0.00 4.30
2697 3818 4.510340 CGTTCTTATATTTTGGGACGGAGG 59.490 45.833 0.00 0.00 0.00 4.30
2698 3819 5.114081 ACGTTCTTATATTTTGGGACGGAG 58.886 41.667 0.00 0.00 0.00 4.63
2699 3820 5.088680 ACGTTCTTATATTTTGGGACGGA 57.911 39.130 0.00 0.00 0.00 4.69
2700 3821 5.806366 AACGTTCTTATATTTTGGGACGG 57.194 39.130 0.00 0.00 0.00 4.79
2701 3822 9.054191 GTAAAAACGTTCTTATATTTTGGGACG 57.946 33.333 0.00 0.00 0.00 4.79
2702 3823 9.896263 TGTAAAAACGTTCTTATATTTTGGGAC 57.104 29.630 0.00 0.00 0.00 4.46
2703 3824 9.896263 GTGTAAAAACGTTCTTATATTTTGGGA 57.104 29.630 0.00 0.00 0.00 4.37
2704 3825 9.902196 AGTGTAAAAACGTTCTTATATTTTGGG 57.098 29.630 0.00 0.00 0.00 4.12
2712 3833 9.649167 ACTATGCTAGTGTAAAAACGTTCTTAT 57.351 29.630 0.00 0.00 37.69 1.73
2714 3835 7.958053 ACTATGCTAGTGTAAAAACGTTCTT 57.042 32.000 0.00 0.00 37.69 2.52
2728 3849 5.989777 AGAACGTTTTTGACACTATGCTAGT 59.010 36.000 0.46 0.00 40.28 2.57
2729 3850 6.467723 AGAACGTTTTTGACACTATGCTAG 57.532 37.500 0.46 0.00 0.00 3.42
2730 3851 6.854496 AAGAACGTTTTTGACACTATGCTA 57.146 33.333 0.46 0.00 0.00 3.49
2731 3852 5.751243 AAGAACGTTTTTGACACTATGCT 57.249 34.783 0.46 0.00 0.00 3.79
2732 3853 9.769093 AATATAAGAACGTTTTTGACACTATGC 57.231 29.630 13.87 0.00 0.00 3.14
2736 3857 9.458374 CCAAAATATAAGAACGTTTTTGACACT 57.542 29.630 13.87 0.00 38.79 3.55
2737 3858 8.696175 CCCAAAATATAAGAACGTTTTTGACAC 58.304 33.333 13.87 0.00 38.79 3.67
2738 3859 8.630917 TCCCAAAATATAAGAACGTTTTTGACA 58.369 29.630 13.87 0.01 38.79 3.58
2739 3860 8.908678 GTCCCAAAATATAAGAACGTTTTTGAC 58.091 33.333 13.87 5.89 38.79 3.18
2740 3861 8.630917 TGTCCCAAAATATAAGAACGTTTTTGA 58.369 29.630 13.87 2.81 38.79 2.69
2741 3862 8.804688 TGTCCCAAAATATAAGAACGTTTTTG 57.195 30.769 13.87 12.16 37.14 2.44
2742 3863 8.852135 TCTGTCCCAAAATATAAGAACGTTTTT 58.148 29.630 9.22 9.22 0.00 1.94
2743 3864 8.398878 TCTGTCCCAAAATATAAGAACGTTTT 57.601 30.769 0.46 0.00 0.00 2.43
2744 3865 7.120726 CCTCTGTCCCAAAATATAAGAACGTTT 59.879 37.037 0.46 0.00 0.00 3.60
2745 3866 6.598064 CCTCTGTCCCAAAATATAAGAACGTT 59.402 38.462 0.00 0.00 0.00 3.99
2746 3867 6.113411 CCTCTGTCCCAAAATATAAGAACGT 58.887 40.000 0.00 0.00 0.00 3.99
2747 3868 5.527582 CCCTCTGTCCCAAAATATAAGAACG 59.472 44.000 0.00 0.00 0.00 3.95
2748 3869 6.659824 TCCCTCTGTCCCAAAATATAAGAAC 58.340 40.000 0.00 0.00 0.00 3.01
2749 3870 6.447084 ACTCCCTCTGTCCCAAAATATAAGAA 59.553 38.462 0.00 0.00 0.00 2.52
2750 3871 5.970640 ACTCCCTCTGTCCCAAAATATAAGA 59.029 40.000 0.00 0.00 0.00 2.10
2751 3872 6.253946 ACTCCCTCTGTCCCAAAATATAAG 57.746 41.667 0.00 0.00 0.00 1.73
2752 3873 7.947782 ATACTCCCTCTGTCCCAAAATATAA 57.052 36.000 0.00 0.00 0.00 0.98
2753 3874 9.629649 AATATACTCCCTCTGTCCCAAAATATA 57.370 33.333 0.00 0.00 0.00 0.86
2754 3875 8.525729 AATATACTCCCTCTGTCCCAAAATAT 57.474 34.615 0.00 0.00 0.00 1.28
2755 3876 7.947782 AATATACTCCCTCTGTCCCAAAATA 57.052 36.000 0.00 0.00 0.00 1.40
2756 3877 6.848562 AATATACTCCCTCTGTCCCAAAAT 57.151 37.500 0.00 0.00 0.00 1.82
2757 3878 7.758820 TTAATATACTCCCTCTGTCCCAAAA 57.241 36.000 0.00 0.00 0.00 2.44
2758 3879 7.947782 ATTAATATACTCCCTCTGTCCCAAA 57.052 36.000 0.00 0.00 0.00 3.28
2759 3880 9.046846 CATATTAATATACTCCCTCTGTCCCAA 57.953 37.037 7.65 0.00 0.00 4.12
2760 3881 8.184249 ACATATTAATATACTCCCTCTGTCCCA 58.816 37.037 7.65 0.00 0.00 4.37
2761 3882 8.611051 ACATATTAATATACTCCCTCTGTCCC 57.389 38.462 7.65 0.00 0.00 4.46
2762 3883 8.697292 GGACATATTAATATACTCCCTCTGTCC 58.303 40.741 17.13 17.13 33.09 4.02
2763 3884 9.482175 AGGACATATTAATATACTCCCTCTGTC 57.518 37.037 19.20 14.78 0.00 3.51
2810 3931 5.299949 CAGTCATGCTATAGCCAACATGTA 58.700 41.667 21.84 0.74 40.57 2.29
2860 3981 8.169268 CAGTAAGCAAAAGCAGTTATAGTGTAC 58.831 37.037 0.00 0.00 0.00 2.90
2880 4001 0.036732 TGCTTGCCAGTCCCAGTAAG 59.963 55.000 0.00 0.00 0.00 2.34
2887 4008 2.954318 ACATGATAATGCTTGCCAGTCC 59.046 45.455 0.00 0.00 0.00 3.85
3053 4215 4.080975 TGCTGATCAAGTGGTCATCATACA 60.081 41.667 0.00 0.00 0.00 2.29
3054 4216 4.445453 TGCTGATCAAGTGGTCATCATAC 58.555 43.478 0.00 0.00 0.00 2.39
3118 4281 4.122776 CGACTCCATAACAGCTAAAGCAT 58.877 43.478 4.54 0.00 45.16 3.79
3140 4303 7.601073 TTCATGAATGTTCAGACATACAGAC 57.399 36.000 3.38 0.00 45.58 3.51
3172 4335 5.407691 AGCATAATCAGCACGATTGTCATAG 59.592 40.000 10.69 0.00 44.32 2.23
3238 4401 1.613255 CCACGGCCACTACCAGATTTT 60.613 52.381 2.24 0.00 0.00 1.82
3413 4582 0.464036 CTGCGGTATCTTGGGCTACA 59.536 55.000 0.00 0.00 0.00 2.74
3523 4692 0.331278 TTTACCGGACGGAGGGAGTA 59.669 55.000 18.80 0.00 38.96 2.59
3524 4693 0.969409 CTTTACCGGACGGAGGGAGT 60.969 60.000 18.80 0.00 38.96 3.85
3525 4694 0.682209 TCTTTACCGGACGGAGGGAG 60.682 60.000 18.80 9.34 38.96 4.30
3526 4695 0.682209 CTCTTTACCGGACGGAGGGA 60.682 60.000 18.80 8.64 38.96 4.20
3527 4696 0.969409 ACTCTTTACCGGACGGAGGG 60.969 60.000 18.80 7.01 38.96 4.30
3528 4697 0.172803 CACTCTTTACCGGACGGAGG 59.827 60.000 18.80 4.47 38.96 4.30
3529 4698 0.886563 ACACTCTTTACCGGACGGAG 59.113 55.000 18.80 12.33 38.96 4.63
3530 4699 1.812571 GTACACTCTTTACCGGACGGA 59.187 52.381 18.80 0.00 38.96 4.69
3531 4700 1.541147 TGTACACTCTTTACCGGACGG 59.459 52.381 9.46 9.56 42.03 4.79
3532 4701 2.995466 TGTACACTCTTTACCGGACG 57.005 50.000 9.46 0.00 0.00 4.79
3533 4702 4.715527 AGATGTACACTCTTTACCGGAC 57.284 45.455 9.46 0.00 0.00 4.79
3534 4703 5.748402 TCTAGATGTACACTCTTTACCGGA 58.252 41.667 9.46 0.00 0.00 5.14
3535 4704 6.446781 TTCTAGATGTACACTCTTTACCGG 57.553 41.667 0.00 0.00 0.00 5.28
3536 4705 8.928270 AATTTCTAGATGTACACTCTTTACCG 57.072 34.615 0.00 0.00 0.00 4.02
3543 4712 9.871238 TGTCCTAAAATTTCTAGATGTACACTC 57.129 33.333 0.00 0.00 0.00 3.51
3559 4728 9.533831 ACTCAACTCCATAATTTGTCCTAAAAT 57.466 29.630 0.00 0.00 0.00 1.82
3560 4729 8.934023 ACTCAACTCCATAATTTGTCCTAAAA 57.066 30.769 0.00 0.00 0.00 1.52
3564 4733 8.934023 TTTTACTCAACTCCATAATTTGTCCT 57.066 30.769 0.00 0.00 0.00 3.85
3587 4756 3.818180 TGCACCTTTCCAATGCATTTTT 58.182 36.364 9.83 0.00 44.17 1.94
3588 4757 3.488778 TGCACCTTTCCAATGCATTTT 57.511 38.095 9.83 0.00 44.17 1.82
3593 4762 0.671472 GGCTTGCACCTTTCCAATGC 60.671 55.000 0.00 0.00 39.88 3.56
3594 4763 0.680618 TGGCTTGCACCTTTCCAATG 59.319 50.000 0.00 0.00 0.00 2.82
3595 4764 0.681175 GTGGCTTGCACCTTTCCAAT 59.319 50.000 0.00 0.00 0.00 3.16
3596 4765 1.398958 GGTGGCTTGCACCTTTCCAA 61.399 55.000 3.58 0.00 39.52 3.53
3597 4766 1.832167 GGTGGCTTGCACCTTTCCA 60.832 57.895 3.58 0.00 39.52 3.53
3598 4767 1.187567 ATGGTGGCTTGCACCTTTCC 61.188 55.000 11.31 0.00 42.92 3.13
3599 4768 0.244721 GATGGTGGCTTGCACCTTTC 59.755 55.000 11.31 5.60 42.92 2.62
3600 4769 0.178953 AGATGGTGGCTTGCACCTTT 60.179 50.000 11.31 0.44 42.92 3.11
3601 4770 0.610232 GAGATGGTGGCTTGCACCTT 60.610 55.000 11.31 5.61 42.92 3.50
3602 4771 1.001641 GAGATGGTGGCTTGCACCT 60.002 57.895 11.31 0.00 42.92 4.00
3603 4772 1.001641 AGAGATGGTGGCTTGCACC 60.002 57.895 3.83 3.83 42.80 5.01
3604 4773 1.028868 GGAGAGATGGTGGCTTGCAC 61.029 60.000 0.00 0.00 0.00 4.57
3605 4774 1.300963 GGAGAGATGGTGGCTTGCA 59.699 57.895 0.00 0.00 0.00 4.08
3606 4775 1.452833 GGGAGAGATGGTGGCTTGC 60.453 63.158 0.00 0.00 0.00 4.01
3607 4776 1.225704 GGGGAGAGATGGTGGCTTG 59.774 63.158 0.00 0.00 0.00 4.01
3608 4777 0.985490 GAGGGGAGAGATGGTGGCTT 60.985 60.000 0.00 0.00 0.00 4.35
3609 4778 1.383803 GAGGGGAGAGATGGTGGCT 60.384 63.158 0.00 0.00 0.00 4.75
3610 4779 0.985490 AAGAGGGGAGAGATGGTGGC 60.985 60.000 0.00 0.00 0.00 5.01
3611 4780 1.589414 AAAGAGGGGAGAGATGGTGG 58.411 55.000 0.00 0.00 0.00 4.61
3612 4781 5.379706 AATTAAAGAGGGGAGAGATGGTG 57.620 43.478 0.00 0.00 0.00 4.17
3613 4782 5.369993 GGTAATTAAAGAGGGGAGAGATGGT 59.630 44.000 0.00 0.00 0.00 3.55
3614 4783 5.221945 GGGTAATTAAAGAGGGGAGAGATGG 60.222 48.000 0.00 0.00 0.00 3.51
3615 4784 5.369699 TGGGTAATTAAAGAGGGGAGAGATG 59.630 44.000 0.00 0.00 0.00 2.90
3616 4785 5.548573 TGGGTAATTAAAGAGGGGAGAGAT 58.451 41.667 0.00 0.00 0.00 2.75
3617 4786 4.967871 TGGGTAATTAAAGAGGGGAGAGA 58.032 43.478 0.00 0.00 0.00 3.10
3618 4787 5.437946 GTTGGGTAATTAAAGAGGGGAGAG 58.562 45.833 0.00 0.00 0.00 3.20
3619 4788 4.228895 GGTTGGGTAATTAAAGAGGGGAGA 59.771 45.833 0.00 0.00 0.00 3.71
3620 4789 4.533815 GGTTGGGTAATTAAAGAGGGGAG 58.466 47.826 0.00 0.00 0.00 4.30
3621 4790 3.270169 GGGTTGGGTAATTAAAGAGGGGA 59.730 47.826 0.00 0.00 0.00 4.81
3622 4791 3.629025 GGGGTTGGGTAATTAAAGAGGGG 60.629 52.174 0.00 0.00 0.00 4.79
3623 4792 3.629025 GGGGGTTGGGTAATTAAAGAGGG 60.629 52.174 0.00 0.00 0.00 4.30
3624 4793 3.011934 TGGGGGTTGGGTAATTAAAGAGG 59.988 47.826 0.00 0.00 0.00 3.69
3625 4794 4.325084 TGGGGGTTGGGTAATTAAAGAG 57.675 45.455 0.00 0.00 0.00 2.85
3626 4795 4.761591 TTGGGGGTTGGGTAATTAAAGA 57.238 40.909 0.00 0.00 0.00 2.52
3627 4796 5.026790 TCATTGGGGGTTGGGTAATTAAAG 58.973 41.667 0.00 0.00 0.00 1.85
3628 4797 5.024803 TCATTGGGGGTTGGGTAATTAAA 57.975 39.130 0.00 0.00 0.00 1.52
3629 4798 4.615513 CTCATTGGGGGTTGGGTAATTAA 58.384 43.478 0.00 0.00 0.00 1.40
3630 4799 3.628769 GCTCATTGGGGGTTGGGTAATTA 60.629 47.826 0.00 0.00 0.00 1.40
3631 4800 2.892301 GCTCATTGGGGGTTGGGTAATT 60.892 50.000 0.00 0.00 0.00 1.40
3632 4801 1.342975 GCTCATTGGGGGTTGGGTAAT 60.343 52.381 0.00 0.00 0.00 1.89
3633 4802 0.040499 GCTCATTGGGGGTTGGGTAA 59.960 55.000 0.00 0.00 0.00 2.85
3634 4803 0.849094 AGCTCATTGGGGGTTGGGTA 60.849 55.000 0.00 0.00 0.00 3.69
3635 4804 0.849094 TAGCTCATTGGGGGTTGGGT 60.849 55.000 0.00 0.00 0.00 4.51
3636 4805 0.334676 TTAGCTCATTGGGGGTTGGG 59.665 55.000 0.00 0.00 0.00 4.12
3637 4806 1.005924 ACTTAGCTCATTGGGGGTTGG 59.994 52.381 0.00 0.00 0.00 3.77
3638 4807 2.094675 CACTTAGCTCATTGGGGGTTG 58.905 52.381 0.00 0.00 0.00 3.77
3639 4808 1.616994 GCACTTAGCTCATTGGGGGTT 60.617 52.381 0.00 0.00 41.15 4.11
3640 4809 0.034089 GCACTTAGCTCATTGGGGGT 60.034 55.000 0.00 0.00 41.15 4.95
3641 4810 0.034186 TGCACTTAGCTCATTGGGGG 60.034 55.000 0.00 0.00 45.94 5.40
3642 4811 1.679680 CATGCACTTAGCTCATTGGGG 59.320 52.381 0.00 0.00 45.94 4.96
3643 4812 2.372264 ACATGCACTTAGCTCATTGGG 58.628 47.619 0.00 0.00 45.94 4.12
3644 4813 3.313526 GGTACATGCACTTAGCTCATTGG 59.686 47.826 0.00 0.00 45.94 3.16
3645 4814 3.940852 TGGTACATGCACTTAGCTCATTG 59.059 43.478 0.00 0.00 45.94 2.82
3646 4815 4.220693 TGGTACATGCACTTAGCTCATT 57.779 40.909 0.00 0.00 45.94 2.57
3647 4816 3.912496 TGGTACATGCACTTAGCTCAT 57.088 42.857 0.00 0.00 45.94 2.90
3662 4831 8.668510 AAAACATATCTCTCATCACATGGTAC 57.331 34.615 0.00 0.00 0.00 3.34
3663 4832 7.933577 GGAAAACATATCTCTCATCACATGGTA 59.066 37.037 0.00 0.00 0.00 3.25
3664 4833 6.769822 GGAAAACATATCTCTCATCACATGGT 59.230 38.462 0.00 0.00 0.00 3.55
3665 4834 6.206243 GGGAAAACATATCTCTCATCACATGG 59.794 42.308 0.00 0.00 0.00 3.66
3666 4835 6.769341 TGGGAAAACATATCTCTCATCACATG 59.231 38.462 0.00 0.00 0.00 3.21
3667 4836 6.769822 GTGGGAAAACATATCTCTCATCACAT 59.230 38.462 0.00 0.00 0.00 3.21
3668 4837 6.070021 AGTGGGAAAACATATCTCTCATCACA 60.070 38.462 0.00 0.00 0.00 3.58
3669 4838 6.352516 AGTGGGAAAACATATCTCTCATCAC 58.647 40.000 0.00 0.00 0.00 3.06
3670 4839 6.566079 AGTGGGAAAACATATCTCTCATCA 57.434 37.500 0.00 0.00 0.00 3.07
3671 4840 7.872113 AAAGTGGGAAAACATATCTCTCATC 57.128 36.000 0.00 0.00 0.00 2.92
3672 4841 9.753674 TTTAAAGTGGGAAAACATATCTCTCAT 57.246 29.630 0.00 0.00 0.00 2.90
3673 4842 9.231297 CTTTAAAGTGGGAAAACATATCTCTCA 57.769 33.333 7.07 0.00 0.00 3.27
3674 4843 9.232473 ACTTTAAAGTGGGAAAACATATCTCTC 57.768 33.333 19.94 0.00 37.98 3.20
3691 4860 6.378280 CCTATCTTCCCAATGCACTTTAAAGT 59.622 38.462 15.22 15.22 40.60 2.66
3692 4861 6.603201 TCCTATCTTCCCAATGCACTTTAAAG 59.397 38.462 13.76 13.76 0.00 1.85
3693 4862 6.489603 TCCTATCTTCCCAATGCACTTTAAA 58.510 36.000 0.00 0.00 0.00 1.52
3694 4863 6.073447 TCCTATCTTCCCAATGCACTTTAA 57.927 37.500 0.00 0.00 0.00 1.52
3695 4864 5.191722 ACTCCTATCTTCCCAATGCACTTTA 59.808 40.000 0.00 0.00 0.00 1.85
3696 4865 4.018050 ACTCCTATCTTCCCAATGCACTTT 60.018 41.667 0.00 0.00 0.00 2.66
3697 4866 3.525199 ACTCCTATCTTCCCAATGCACTT 59.475 43.478 0.00 0.00 0.00 3.16
3698 4867 3.118531 ACTCCTATCTTCCCAATGCACT 58.881 45.455 0.00 0.00 0.00 4.40
3699 4868 3.567478 ACTCCTATCTTCCCAATGCAC 57.433 47.619 0.00 0.00 0.00 4.57
3700 4869 4.037222 TGTACTCCTATCTTCCCAATGCA 58.963 43.478 0.00 0.00 0.00 3.96
3701 4870 4.101741 AGTGTACTCCTATCTTCCCAATGC 59.898 45.833 0.00 0.00 0.00 3.56
3702 4871 5.600484 AGAGTGTACTCCTATCTTCCCAATG 59.400 44.000 8.34 0.00 43.88 2.82
3703 4872 5.782925 AGAGTGTACTCCTATCTTCCCAAT 58.217 41.667 8.34 0.00 43.88 3.16
3704 4873 5.208294 AGAGTGTACTCCTATCTTCCCAA 57.792 43.478 8.34 0.00 43.88 4.12
3705 4874 4.883021 AGAGTGTACTCCTATCTTCCCA 57.117 45.455 8.34 0.00 43.88 4.37
3706 4875 6.070710 ACAAAAGAGTGTACTCCTATCTTCCC 60.071 42.308 8.34 0.00 43.88 3.97
3707 4876 6.814146 CACAAAAGAGTGTACTCCTATCTTCC 59.186 42.308 8.34 0.00 43.88 3.46
3708 4877 6.814146 CCACAAAAGAGTGTACTCCTATCTTC 59.186 42.308 8.34 0.00 43.88 2.87
3709 4878 6.497259 TCCACAAAAGAGTGTACTCCTATCTT 59.503 38.462 8.34 0.00 43.88 2.40
3710 4879 6.017192 TCCACAAAAGAGTGTACTCCTATCT 58.983 40.000 8.34 0.00 43.88 1.98
3711 4880 6.100668 GTCCACAAAAGAGTGTACTCCTATC 58.899 44.000 8.34 0.00 43.88 2.08
3712 4881 5.542635 TGTCCACAAAAGAGTGTACTCCTAT 59.457 40.000 8.34 0.00 43.88 2.57
3713 4882 4.897076 TGTCCACAAAAGAGTGTACTCCTA 59.103 41.667 8.34 0.00 43.88 2.94
3714 4883 3.709653 TGTCCACAAAAGAGTGTACTCCT 59.290 43.478 8.34 0.00 43.88 3.69
3715 4884 4.067972 TGTCCACAAAAGAGTGTACTCC 57.932 45.455 8.34 0.00 43.88 3.85
3728 4897 6.707440 TCTAGCTTCAAAATTTGTCCACAA 57.293 33.333 5.56 0.00 0.00 3.33
3729 4898 6.265196 ACATCTAGCTTCAAAATTTGTCCACA 59.735 34.615 5.56 0.00 0.00 4.17
3730 4899 6.681777 ACATCTAGCTTCAAAATTTGTCCAC 58.318 36.000 5.56 0.00 0.00 4.02
3731 4900 6.899393 ACATCTAGCTTCAAAATTTGTCCA 57.101 33.333 5.56 0.00 0.00 4.02
3732 4901 7.750903 GTGTACATCTAGCTTCAAAATTTGTCC 59.249 37.037 5.56 0.00 0.00 4.02
3733 4902 8.507249 AGTGTACATCTAGCTTCAAAATTTGTC 58.493 33.333 5.56 0.00 0.00 3.18
3734 4903 8.396272 AGTGTACATCTAGCTTCAAAATTTGT 57.604 30.769 5.56 0.00 0.00 2.83
3735 4904 8.725148 AGAGTGTACATCTAGCTTCAAAATTTG 58.275 33.333 0.00 0.00 0.00 2.32
3736 4905 8.854614 AGAGTGTACATCTAGCTTCAAAATTT 57.145 30.769 0.00 0.00 0.00 1.82
3737 4906 8.854614 AAGAGTGTACATCTAGCTTCAAAATT 57.145 30.769 0.00 0.00 0.00 1.82
3738 4907 8.097038 TGAAGAGTGTACATCTAGCTTCAAAAT 58.903 33.333 18.14 0.50 37.79 1.82
3739 4908 7.385205 GTGAAGAGTGTACATCTAGCTTCAAAA 59.615 37.037 20.27 5.92 41.02 2.44
3740 4909 6.868864 GTGAAGAGTGTACATCTAGCTTCAAA 59.131 38.462 20.27 6.38 41.02 2.69
3741 4910 6.390721 GTGAAGAGTGTACATCTAGCTTCAA 58.609 40.000 20.27 9.81 41.02 2.69
3742 4911 5.105716 GGTGAAGAGTGTACATCTAGCTTCA 60.106 44.000 17.25 17.25 38.23 3.02
3743 4912 5.344884 GGTGAAGAGTGTACATCTAGCTTC 58.655 45.833 0.00 8.64 0.00 3.86
3744 4913 4.142359 CGGTGAAGAGTGTACATCTAGCTT 60.142 45.833 0.00 0.00 0.00 3.74
3745 4914 3.378742 CGGTGAAGAGTGTACATCTAGCT 59.621 47.826 0.00 0.00 0.00 3.32
3746 4915 3.489398 CCGGTGAAGAGTGTACATCTAGC 60.489 52.174 0.00 0.00 0.00 3.42
3747 4916 3.945921 TCCGGTGAAGAGTGTACATCTAG 59.054 47.826 0.00 0.00 0.00 2.43
3748 4917 3.693085 GTCCGGTGAAGAGTGTACATCTA 59.307 47.826 0.00 0.00 0.00 1.98
3749 4918 2.492484 GTCCGGTGAAGAGTGTACATCT 59.508 50.000 0.00 0.27 0.00 2.90
3750 4919 2.731341 CGTCCGGTGAAGAGTGTACATC 60.731 54.545 0.00 0.00 0.00 3.06
3751 4920 1.201647 CGTCCGGTGAAGAGTGTACAT 59.798 52.381 0.00 0.00 0.00 2.29
3752 4921 0.594602 CGTCCGGTGAAGAGTGTACA 59.405 55.000 0.00 0.00 0.00 2.90
3753 4922 0.109412 CCGTCCGGTGAAGAGTGTAC 60.109 60.000 0.00 0.00 0.00 2.90
3754 4923 0.250858 TCCGTCCGGTGAAGAGTGTA 60.251 55.000 0.00 0.00 36.47 2.90
3755 4924 1.524863 CTCCGTCCGGTGAAGAGTGT 61.525 60.000 0.00 0.00 36.47 3.55
3756 4925 1.213013 CTCCGTCCGGTGAAGAGTG 59.787 63.158 0.00 0.00 36.47 3.51
3757 4926 1.977544 CCTCCGTCCGGTGAAGAGT 60.978 63.158 0.00 0.00 36.47 3.24
3758 4927 2.711922 CCCTCCGTCCGGTGAAGAG 61.712 68.421 0.00 3.95 36.47 2.85
3759 4928 2.678934 CCCTCCGTCCGGTGAAGA 60.679 66.667 0.00 0.00 36.47 2.87
3760 4929 2.678934 TCCCTCCGTCCGGTGAAG 60.679 66.667 0.00 0.00 36.47 3.02
3761 4930 2.141011 TACTCCCTCCGTCCGGTGAA 62.141 60.000 0.00 0.00 36.47 3.18
3762 4931 2.547640 CTACTCCCTCCGTCCGGTGA 62.548 65.000 0.00 0.00 36.47 4.02
3763 4932 2.044650 TACTCCCTCCGTCCGGTG 60.045 66.667 0.00 3.10 36.47 4.94
3764 4933 2.274760 CTACTCCCTCCGTCCGGT 59.725 66.667 0.00 0.00 36.47 5.28
3765 4934 2.518825 CCTACTCCCTCCGTCCGG 60.519 72.222 0.00 0.00 0.00 5.14
3766 4935 3.217743 GCCTACTCCCTCCGTCCG 61.218 72.222 0.00 0.00 0.00 4.79
3767 4936 1.381463 AAGCCTACTCCCTCCGTCC 60.381 63.158 0.00 0.00 0.00 4.79
3768 4937 0.683504 TCAAGCCTACTCCCTCCGTC 60.684 60.000 0.00 0.00 0.00 4.79
3769 4938 0.252103 TTCAAGCCTACTCCCTCCGT 60.252 55.000 0.00 0.00 0.00 4.69
3770 4939 0.461961 CTTCAAGCCTACTCCCTCCG 59.538 60.000 0.00 0.00 0.00 4.63
3771 4940 1.867363 TCTTCAAGCCTACTCCCTCC 58.133 55.000 0.00 0.00 0.00 4.30
3772 4941 2.567615 TGTTCTTCAAGCCTACTCCCTC 59.432 50.000 0.00 0.00 0.00 4.30
3773 4942 2.621070 TGTTCTTCAAGCCTACTCCCT 58.379 47.619 0.00 0.00 0.00 4.20
3774 4943 3.418684 TTGTTCTTCAAGCCTACTCCC 57.581 47.619 0.00 0.00 0.00 4.30
3775 4944 3.753797 CCTTTGTTCTTCAAGCCTACTCC 59.246 47.826 0.00 0.00 37.35 3.85
3776 4945 4.642429 TCCTTTGTTCTTCAAGCCTACTC 58.358 43.478 0.00 0.00 37.35 2.59
3777 4946 4.706842 TCCTTTGTTCTTCAAGCCTACT 57.293 40.909 0.00 0.00 37.35 2.57
3778 4947 5.063880 TCTTCCTTTGTTCTTCAAGCCTAC 58.936 41.667 0.00 0.00 37.35 3.18
3932 5114 5.937111 ACATTAGACCACTTTACCAACAGT 58.063 37.500 0.00 0.00 0.00 3.55
3933 5115 6.877611 AACATTAGACCACTTTACCAACAG 57.122 37.500 0.00 0.00 0.00 3.16
3934 5116 6.263617 GGAAACATTAGACCACTTTACCAACA 59.736 38.462 0.00 0.00 0.00 3.33
3935 5117 6.294342 GGGAAACATTAGACCACTTTACCAAC 60.294 42.308 0.00 0.00 0.00 3.77
3936 5118 5.771165 GGGAAACATTAGACCACTTTACCAA 59.229 40.000 0.00 0.00 0.00 3.67
3937 5119 5.073965 AGGGAAACATTAGACCACTTTACCA 59.926 40.000 0.00 0.00 0.00 3.25
3938 5120 5.567430 AGGGAAACATTAGACCACTTTACC 58.433 41.667 0.00 0.00 0.00 2.85
3939 5121 7.520451 AAAGGGAAACATTAGACCACTTTAC 57.480 36.000 0.00 0.00 31.56 2.01
3998 5180 7.359262 TCACATTTTATGTTTCTGACCTACG 57.641 36.000 0.00 0.00 42.70 3.51
3999 5181 8.999431 TCTTCACATTTTATGTTTCTGACCTAC 58.001 33.333 0.00 0.00 42.70 3.18
4154 5336 2.441532 GGAGACCGATCCCGTGGA 60.442 66.667 0.00 0.00 35.55 4.02
4222 5440 4.767255 GCGGTGGAGACCTGCTGG 62.767 72.222 8.29 8.29 40.58 4.85
4305 5523 4.821589 GTTGCGAGGAGGCGGAGG 62.822 72.222 0.00 0.00 35.06 4.30
4306 5524 3.997064 CTGTTGCGAGGAGGCGGAG 62.997 68.421 0.00 0.00 35.06 4.63
4307 5525 4.069232 CTGTTGCGAGGAGGCGGA 62.069 66.667 0.00 0.00 35.06 5.54
4308 5526 3.589654 TTCTGTTGCGAGGAGGCGG 62.590 63.158 0.00 0.00 35.06 6.13
4309 5527 2.048222 TTCTGTTGCGAGGAGGCG 60.048 61.111 0.00 0.00 35.06 5.52
4310 5528 2.394563 GCTTCTGTTGCGAGGAGGC 61.395 63.158 0.00 0.00 0.00 4.70
4311 5529 0.392193 ATGCTTCTGTTGCGAGGAGG 60.392 55.000 0.00 0.00 0.00 4.30
4312 5530 1.005340 GATGCTTCTGTTGCGAGGAG 58.995 55.000 0.00 0.00 0.00 3.69
4313 5531 0.321346 TGATGCTTCTGTTGCGAGGA 59.679 50.000 0.88 0.00 0.00 3.71
4314 5532 0.725686 CTGATGCTTCTGTTGCGAGG 59.274 55.000 0.88 0.00 0.00 4.63
4315 5533 0.096628 GCTGATGCTTCTGTTGCGAG 59.903 55.000 8.05 0.00 36.03 5.03
4316 5534 0.603439 TGCTGATGCTTCTGTTGCGA 60.603 50.000 8.05 0.00 40.48 5.10
4317 5535 0.179197 CTGCTGATGCTTCTGTTGCG 60.179 55.000 8.05 0.00 40.48 4.85
4318 5536 0.170561 CCTGCTGATGCTTCTGTTGC 59.829 55.000 8.05 4.98 40.48 4.17
4319 5537 1.467734 GACCTGCTGATGCTTCTGTTG 59.532 52.381 8.05 2.52 40.48 3.33
4320 5538 1.072806 TGACCTGCTGATGCTTCTGTT 59.927 47.619 8.05 0.00 40.48 3.16
4321 5539 0.689055 TGACCTGCTGATGCTTCTGT 59.311 50.000 8.05 0.00 40.48 3.41
4322 5540 1.085091 GTGACCTGCTGATGCTTCTG 58.915 55.000 0.88 1.77 40.48 3.02
4323 5541 0.035630 GGTGACCTGCTGATGCTTCT 60.036 55.000 0.00 0.00 40.48 2.85
4324 5542 0.321919 TGGTGACCTGCTGATGCTTC 60.322 55.000 2.11 0.00 40.48 3.86
4325 5543 0.607489 GTGGTGACCTGCTGATGCTT 60.607 55.000 2.11 0.00 40.48 3.91
4326 5544 1.002868 GTGGTGACCTGCTGATGCT 60.003 57.895 2.11 0.00 40.48 3.79
4327 5545 2.042831 GGTGGTGACCTGCTGATGC 61.043 63.158 2.11 0.00 39.47 3.91
4328 5546 1.742880 CGGTGGTGACCTGCTGATG 60.743 63.158 2.11 0.00 40.58 3.07
4329 5547 2.665000 CGGTGGTGACCTGCTGAT 59.335 61.111 2.11 0.00 40.58 2.90
4330 5548 4.314440 GCGGTGGTGACCTGCTGA 62.314 66.667 2.11 0.00 40.58 4.26
4334 5552 4.394712 GGAGGCGGTGGTGACCTG 62.395 72.222 2.11 0.00 40.58 4.00
4335 5553 4.640690 AGGAGGCGGTGGTGACCT 62.641 66.667 2.11 0.00 40.58 3.85
4336 5554 4.083862 GAGGAGGCGGTGGTGACC 62.084 72.222 0.00 0.00 39.14 4.02
4337 5555 4.436998 CGAGGAGGCGGTGGTGAC 62.437 72.222 0.00 0.00 0.00 3.67
4338 5556 4.988716 ACGAGGAGGCGGTGGTGA 62.989 66.667 0.00 0.00 35.12 4.02
4573 5791 3.872771 AGCAAAAGAACACAAATGCCAAG 59.127 39.130 0.00 0.00 34.44 3.61
4819 6048 6.825721 AGTCATCAGGATCATGAAAGGTTTAC 59.174 38.462 14.88 4.75 31.98 2.01
4864 6093 6.633500 AGAATCTTTTCAATGTTCGTTCCA 57.367 33.333 0.00 0.00 34.08 3.53
4887 6116 7.500141 TGCTTTTAGCTACAGATCATGATGTA 58.500 34.615 14.30 10.80 42.97 2.29
4965 6201 2.360350 CCAGAACAGCCACGCCAT 60.360 61.111 0.00 0.00 0.00 4.40
5012 6248 1.665735 CCGGTGTTCGATGCCAAAAAG 60.666 52.381 0.00 0.00 42.43 2.27
5024 6260 8.751302 AAAATCAAAATTATGTACCGGTGTTC 57.249 30.769 19.93 8.35 0.00 3.18
5081 6317 1.837439 TCAAACATGCGGACCTATCCT 59.163 47.619 0.00 0.00 43.73 3.24
5088 6324 1.543802 TGGGATTTCAAACATGCGGAC 59.456 47.619 0.00 0.00 0.00 4.79
5111 6347 1.440938 CGGTGTTGGACGGCAAAAGA 61.441 55.000 0.00 0.00 0.00 2.52
5155 6394 1.003003 TGTGGGATTTCAGACATGCGA 59.997 47.619 0.00 0.00 0.00 5.10
5180 6419 1.985895 CCCTCCCCTGTGTTTACTTCT 59.014 52.381 0.00 0.00 0.00 2.85
5200 6439 1.936547 GGAGATCCGAACATCTGCAAC 59.063 52.381 5.87 0.00 40.17 4.17
5208 6447 2.159240 CGACATGAAGGAGATCCGAACA 60.159 50.000 0.00 0.00 42.08 3.18
5268 6507 2.193536 GCAACACCGTGCCCTCTTT 61.194 57.895 0.00 0.00 38.66 2.52
5272 6511 3.196207 ATCTGCAACACCGTGCCCT 62.196 57.895 0.00 0.00 44.26 5.19
5273 6512 2.672996 ATCTGCAACACCGTGCCC 60.673 61.111 0.00 0.00 44.26 5.36
5274 6513 2.562912 CATCTGCAACACCGTGCC 59.437 61.111 0.00 0.00 44.26 5.01
5276 6515 2.562912 GGCATCTGCAACACCGTG 59.437 61.111 4.33 0.00 44.36 4.94
5277 6516 2.672996 GGGCATCTGCAACACCGT 60.673 61.111 4.33 0.00 44.36 4.83
5290 6529 3.372730 GCACAATGAAGCCGGGCA 61.373 61.111 23.09 0.00 0.00 5.36
5303 6542 2.289945 ACTTTTTGGCAAAACAGGCACA 60.290 40.909 24.04 7.75 44.33 4.57
5305 6544 2.777832 ACTTTTTGGCAAAACAGGCA 57.222 40.000 24.04 9.16 42.83 4.75
5404 6654 6.429624 TGTGTAGCATGCAAATAATCGAATC 58.570 36.000 21.98 0.00 27.52 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.