Multiple sequence alignment - TraesCS6A01G218900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G218900 chr6A 100.000 3053 0 0 1 3053 405165850 405168902 0.000000e+00 5638.0
1 TraesCS6A01G218900 chr6B 91.689 2587 101 22 1 2575 445851384 445853868 0.000000e+00 3482.0
2 TraesCS6A01G218900 chr6B 93.443 305 9 5 2578 2871 445854390 445854694 2.790000e-120 442.0
3 TraesCS6A01G218900 chr6B 89.865 148 8 6 2885 3029 445854675 445854818 1.870000e-42 183.0
4 TraesCS6A01G218900 chr6D 92.285 1698 62 33 636 2304 284849455 284851112 0.000000e+00 2346.0
5 TraesCS6A01G218900 chr6D 92.320 651 31 9 1 649 284848805 284849438 0.000000e+00 907.0
6 TraesCS6A01G218900 chr6D 95.896 268 9 2 2577 2842 284853266 284853533 1.680000e-117 433.0
7 TraesCS6A01G218900 chr6D 87.451 255 19 8 2341 2586 284851864 284852114 6.440000e-72 281.0
8 TraesCS6A01G218900 chr6D 97.143 35 1 0 2315 2349 284851678 284851712 3.290000e-05 60.2
9 TraesCS6A01G218900 chr2A 89.595 173 17 1 1781 1953 594581043 594581214 5.130000e-53 219.0
10 TraesCS6A01G218900 chr2B 88.636 176 18 2 1781 1955 530307285 530307459 2.380000e-51 213.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G218900 chr6A 405165850 405168902 3052 False 5638.00 5638 100.000000 1 3053 1 chr6A.!!$F1 3052
1 TraesCS6A01G218900 chr6B 445851384 445854818 3434 False 1369.00 3482 91.665667 1 3029 3 chr6B.!!$F1 3028
2 TraesCS6A01G218900 chr6D 284848805 284853533 4728 False 805.44 2346 93.019000 1 2842 5 chr6D.!!$F1 2841

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
960 1008 0.116342 AAATCTTCCAACCCACCCCC 59.884 55.0 0.0 0.0 0.0 5.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2459 3241 1.091771 CCACGCTTCCATTCGCATCT 61.092 55.0 0.0 0.0 0.0 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 34 1.604593 GGTTGGCTGACATGGCAGT 60.605 57.895 29.02 0.00 43.29 4.40
34 36 0.804989 GTTGGCTGACATGGCAGTAC 59.195 55.000 29.02 21.80 43.29 2.73
55 57 1.269778 CGCATCCGCAAGAGATAAGGA 60.270 52.381 0.00 0.00 43.02 3.36
78 80 0.250901 GAGCCAAGAAGCCAACCAGA 60.251 55.000 0.00 0.00 0.00 3.86
160 168 4.704833 CCACCTGCCACCCTCACG 62.705 72.222 0.00 0.00 0.00 4.35
231 239 2.267961 CAACTGGACCCGCCTACC 59.732 66.667 0.00 0.00 37.63 3.18
272 281 2.388121 CAAACTTTCTCCAGCGCAAAG 58.612 47.619 11.47 12.91 33.98 2.77
284 293 2.954611 GCAAAGAAGGTGACGGGC 59.045 61.111 0.00 0.00 0.00 6.13
363 372 1.184322 ATGCATCCACCCAACGCAAA 61.184 50.000 0.00 0.00 35.98 3.68
483 492 4.969196 CTCACGCCCGTGTGCTGT 62.969 66.667 18.85 0.00 45.55 4.40
492 501 0.601046 CCGTGTGCTGTGTCATCACT 60.601 55.000 5.56 0.00 44.14 3.41
623 632 2.035632 AGATCCGACTGAGGAATGGTC 58.964 52.381 0.00 0.00 44.50 4.02
668 707 1.621107 CGACAGCAATGGCAAACATC 58.379 50.000 0.00 0.00 44.61 3.06
669 708 1.621107 GACAGCAATGGCAAACATCG 58.379 50.000 0.00 0.00 44.61 3.84
727 769 8.570096 AAAATAAGCTTGTTTTTAACTCGACC 57.430 30.769 23.48 0.00 28.89 4.79
800 848 4.070552 GCCCGAAGTGTCTCGCCT 62.071 66.667 0.00 0.00 37.51 5.52
801 849 2.182030 CCCGAAGTGTCTCGCCTC 59.818 66.667 0.00 0.00 37.51 4.70
852 900 2.514592 CGCCCCTACCATGTGCTG 60.515 66.667 0.00 0.00 0.00 4.41
853 901 2.830370 GCCCCTACCATGTGCTGC 60.830 66.667 0.00 0.00 0.00 5.25
854 902 2.124151 CCCCTACCATGTGCTGCC 60.124 66.667 0.00 0.00 0.00 4.85
855 903 2.683465 CCCCTACCATGTGCTGCCT 61.683 63.158 0.00 0.00 0.00 4.75
856 904 1.452651 CCCTACCATGTGCTGCCTG 60.453 63.158 0.00 0.00 0.00 4.85
880 928 2.045926 CCCGCAGACCCCTCAAAG 60.046 66.667 0.00 0.00 0.00 2.77
951 999 1.269517 GCAACGCACCAAATCTTCCAA 60.270 47.619 0.00 0.00 0.00 3.53
960 1008 0.116342 AAATCTTCCAACCCACCCCC 59.884 55.000 0.00 0.00 0.00 5.40
1014 1065 1.205893 AGCGAGATGAAAGTGGAGGAC 59.794 52.381 0.00 0.00 0.00 3.85
1332 1383 2.325082 CCCCGTCACGCCTTTCTTG 61.325 63.158 0.00 0.00 0.00 3.02
1560 1611 1.415672 GGATCAAGGCCATCGGGGTA 61.416 60.000 5.01 0.00 39.65 3.69
1576 1627 4.700448 TACCCGTCGCCCCTTCCA 62.700 66.667 0.00 0.00 0.00 3.53
1685 1746 1.211190 GACCTGGACGTACGTGGTC 59.789 63.158 29.41 29.41 40.05 4.02
1686 1747 1.228367 ACCTGGACGTACGTGGTCT 60.228 57.895 28.16 0.00 34.82 3.85
1687 1748 1.211969 CCTGGACGTACGTGGTCTG 59.788 63.158 28.16 16.99 34.82 3.51
1688 1749 1.211969 CTGGACGTACGTGGTCTGG 59.788 63.158 28.16 5.87 34.82 3.86
1689 1750 1.521450 CTGGACGTACGTGGTCTGGT 61.521 60.000 28.16 0.00 34.82 4.00
1700 1761 7.140705 CGTACGTGGTCTGGTGATAAATAATA 58.859 38.462 7.22 0.00 0.00 0.98
2190 2257 3.737559 TTGTTCCATGGGATTAGTGCT 57.262 42.857 13.02 0.00 0.00 4.40
2214 2281 1.214325 CGTGCCGACCTGATGTACA 59.786 57.895 0.00 0.00 0.00 2.90
2216 2283 0.246635 GTGCCGACCTGATGTACACT 59.753 55.000 0.00 0.00 0.00 3.55
2218 2285 0.530744 GCCGACCTGATGTACACTCA 59.469 55.000 0.00 2.82 0.00 3.41
2219 2286 1.736032 GCCGACCTGATGTACACTCAC 60.736 57.143 0.00 0.00 0.00 3.51
2221 2288 2.416027 CCGACCTGATGTACACTCACTG 60.416 54.545 0.00 0.00 0.00 3.66
2234 2301 2.802816 CACTCACTGTTTTCTTCTCCCG 59.197 50.000 0.00 0.00 0.00 5.14
2248 2315 1.066143 TCTCCCGAATCCAGTCTTTGC 60.066 52.381 0.00 0.00 0.00 3.68
2259 2326 0.106015 AGTCTTTGCACCCTGCCTTT 60.106 50.000 0.00 0.00 44.23 3.11
2260 2327 0.032540 GTCTTTGCACCCTGCCTTTG 59.967 55.000 0.00 0.00 44.23 2.77
2261 2328 0.396974 TCTTTGCACCCTGCCTTTGT 60.397 50.000 0.00 0.00 44.23 2.83
2262 2329 0.465287 CTTTGCACCCTGCCTTTGTT 59.535 50.000 0.00 0.00 44.23 2.83
2263 2330 0.463620 TTTGCACCCTGCCTTTGTTC 59.536 50.000 0.00 0.00 44.23 3.18
2264 2331 1.398958 TTGCACCCTGCCTTTGTTCC 61.399 55.000 0.00 0.00 44.23 3.62
2265 2332 1.832167 GCACCCTGCCTTTGTTCCA 60.832 57.895 0.00 0.00 37.42 3.53
2308 2375 3.316029 CAGCAACTGTGACCTTCATTCAA 59.684 43.478 0.00 0.00 0.00 2.69
2422 3204 1.972198 CTCCAAGCGTGGGAGTACA 59.028 57.895 19.08 0.00 45.59 2.90
2427 3209 2.365617 CCAAGCGTGGGAGTACATATCT 59.634 50.000 11.31 0.00 41.77 1.98
2428 3210 3.181465 CCAAGCGTGGGAGTACATATCTT 60.181 47.826 11.31 0.00 41.77 2.40
2429 3211 4.442706 CAAGCGTGGGAGTACATATCTTT 58.557 43.478 0.00 0.00 0.00 2.52
2430 3212 4.755266 AGCGTGGGAGTACATATCTTTT 57.245 40.909 0.00 0.00 0.00 2.27
2459 3241 3.442273 GGACAGATTTAACAAATGCGGGA 59.558 43.478 0.00 0.00 0.00 5.14
2489 3271 1.001706 GGAAGCGTGGAACAACTTTCC 60.002 52.381 0.00 0.00 44.16 3.13
2532 3324 1.242076 CAACTTTGCTGTGGAGAGGG 58.758 55.000 0.00 0.00 0.00 4.30
2575 3367 4.702831 TCACTGAACACTGAAGCATGTAA 58.297 39.130 0.00 0.00 0.00 2.41
2766 4736 3.316308 CCAACCATTTCCATAGCTGCTAC 59.684 47.826 12.26 0.00 0.00 3.58
2788 4766 1.740718 GCTAGCTGCCACTCCTTGTAC 60.741 57.143 7.70 0.00 35.15 2.90
2790 4768 1.377333 GCTGCCACTCCTTGTACCC 60.377 63.158 0.00 0.00 0.00 3.69
2828 4807 4.346734 TCGTGACCAAGTTATACGAGTC 57.653 45.455 0.00 0.00 38.65 3.36
2844 4823 2.739932 CGAGTCATTAGGGCAACTCCAG 60.740 54.545 0.00 0.00 35.76 3.86
2864 4843 2.098870 GCGCGATTAATCAAAACGGAC 58.901 47.619 12.10 0.00 0.00 4.79
2866 4845 3.088552 CGCGATTAATCAAAACGGACAC 58.911 45.455 15.57 0.00 0.00 3.67
2867 4846 3.181524 CGCGATTAATCAAAACGGACACT 60.182 43.478 15.57 0.00 0.00 3.55
2868 4847 4.031991 CGCGATTAATCAAAACGGACACTA 59.968 41.667 15.57 0.00 0.00 2.74
2869 4848 5.253335 GCGATTAATCAAAACGGACACTAC 58.747 41.667 15.57 0.00 0.00 2.73
2870 4849 5.063060 GCGATTAATCAAAACGGACACTACT 59.937 40.000 15.57 0.00 0.00 2.57
2871 4850 6.401796 GCGATTAATCAAAACGGACACTACTT 60.402 38.462 15.57 0.00 0.00 2.24
2872 4851 7.171434 CGATTAATCAAAACGGACACTACTTC 58.829 38.462 15.57 0.00 0.00 3.01
2873 4852 6.790285 TTAATCAAAACGGACACTACTTCC 57.210 37.500 0.00 0.00 0.00 3.46
2874 4853 3.116079 TCAAAACGGACACTACTTCCC 57.884 47.619 0.00 0.00 0.00 3.97
2875 4854 1.796459 CAAAACGGACACTACTTCCCG 59.204 52.381 0.00 0.00 46.65 5.14
2880 4859 3.302365 CGGACACTACTTCCCGTAAAA 57.698 47.619 0.00 0.00 37.40 1.52
2881 4860 3.652274 CGGACACTACTTCCCGTAAAAA 58.348 45.455 0.00 0.00 37.40 1.94
2945 4924 2.787473 TCTCAAAATGTCCAGCCGAT 57.213 45.000 0.00 0.00 0.00 4.18
2999 4979 2.088950 AATCCGTAAACCCGACACAG 57.911 50.000 0.00 0.00 0.00 3.66
3000 4980 1.259609 ATCCGTAAACCCGACACAGA 58.740 50.000 0.00 0.00 0.00 3.41
3001 4981 0.599558 TCCGTAAACCCGACACAGAG 59.400 55.000 0.00 0.00 0.00 3.35
3007 4987 2.973899 CCCGACACAGAGTGAGGG 59.026 66.667 16.27 16.27 43.49 4.30
3018 4998 1.980765 AGAGTGAGGGCATCTTCAACA 59.019 47.619 0.00 0.00 0.00 3.33
3019 4999 2.373169 AGAGTGAGGGCATCTTCAACAA 59.627 45.455 0.00 0.00 0.00 2.83
3021 5001 1.541588 GTGAGGGCATCTTCAACAACC 59.458 52.381 0.00 0.00 0.00 3.77
3022 5002 0.804989 GAGGGCATCTTCAACAACCG 59.195 55.000 0.00 0.00 0.00 4.44
3024 5004 1.154225 GGCATCTTCAACAACCGCG 60.154 57.895 0.00 0.00 0.00 6.46
3025 5005 1.573829 GGCATCTTCAACAACCGCGA 61.574 55.000 8.23 0.00 0.00 5.87
3026 5006 0.452784 GCATCTTCAACAACCGCGAC 60.453 55.000 8.23 0.00 0.00 5.19
3027 5007 0.165944 CATCTTCAACAACCGCGACC 59.834 55.000 8.23 0.00 0.00 4.79
3028 5008 0.953960 ATCTTCAACAACCGCGACCC 60.954 55.000 8.23 0.00 0.00 4.46
3029 5009 2.950172 CTTCAACAACCGCGACCCG 61.950 63.158 8.23 0.00 0.00 5.28
3040 5020 3.411351 CGACCCGCACAAGTTCCG 61.411 66.667 0.00 0.00 0.00 4.30
3041 5021 3.723348 GACCCGCACAAGTTCCGC 61.723 66.667 0.00 0.00 0.00 5.54
3045 5025 3.118454 CGCACAAGTTCCGCGGAT 61.118 61.111 31.56 13.09 45.08 4.18
3046 5026 1.807981 CGCACAAGTTCCGCGGATA 60.808 57.895 31.56 17.21 45.08 2.59
3047 5027 1.355796 CGCACAAGTTCCGCGGATAA 61.356 55.000 31.56 13.09 45.08 1.75
3048 5028 0.800012 GCACAAGTTCCGCGGATAAA 59.200 50.000 31.56 12.17 0.00 1.40
3049 5029 1.198178 GCACAAGTTCCGCGGATAAAA 59.802 47.619 31.56 11.71 0.00 1.52
3050 5030 2.727916 GCACAAGTTCCGCGGATAAAAG 60.728 50.000 31.56 19.74 0.00 2.27
3051 5031 2.739913 CACAAGTTCCGCGGATAAAAGA 59.260 45.455 31.56 10.33 0.00 2.52
3052 5032 3.187637 CACAAGTTCCGCGGATAAAAGAA 59.812 43.478 31.56 9.43 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 18 0.322456 GGTACTGCCATGTCAGCCAA 60.322 55.000 3.09 0.00 37.59 4.52
55 57 2.829384 TTGGCTTCTTGGCTCCCGT 61.829 57.895 0.00 0.00 42.34 5.28
94 96 2.693762 CCCGTGGATGCTTGCTGTG 61.694 63.158 0.00 0.00 0.00 3.66
149 157 4.736896 GACGGACGTGAGGGTGGC 62.737 72.222 0.53 0.00 0.00 5.01
150 158 4.415332 CGACGGACGTGAGGGTGG 62.415 72.222 0.53 0.00 37.22 4.61
231 239 0.109132 GATGCCCTTGCCGAAAAGTG 60.109 55.000 0.00 0.00 36.33 3.16
854 902 4.767255 GTCTGCGGGCAGGGACAG 62.767 72.222 19.64 0.00 43.75 3.51
907 955 2.879933 CTGAGTGCTCGCTCGCTG 60.880 66.667 6.04 0.00 38.28 5.18
913 961 1.786582 CTTTCTGCTGAGTGCTCGC 59.213 57.895 8.35 8.35 43.37 5.03
921 969 1.648720 GTGCGTTGCTTTCTGCTGA 59.351 52.632 0.00 0.00 43.37 4.26
932 980 2.393764 GTTGGAAGATTTGGTGCGTTG 58.606 47.619 0.00 0.00 0.00 4.10
1014 1065 2.172483 CTCCTCCCACAACCGTCTGG 62.172 65.000 0.00 0.00 42.84 3.86
1023 1074 1.862138 TCCTCCTCCTCCTCCCACA 60.862 63.158 0.00 0.00 0.00 4.17
1116 1167 4.554363 CAGAGGTAGGCGCCGTCG 62.554 72.222 23.20 9.22 39.07 5.12
1685 1746 9.557338 GCGTAGTAGACTATTATTTATCACCAG 57.443 37.037 0.00 0.00 0.00 4.00
1686 1747 8.517878 GGCGTAGTAGACTATTATTTATCACCA 58.482 37.037 0.00 0.00 0.00 4.17
1687 1748 8.738106 AGGCGTAGTAGACTATTATTTATCACC 58.262 37.037 0.00 0.00 0.00 4.02
1700 1761 2.168496 TCTGCAAAGGCGTAGTAGACT 58.832 47.619 0.00 0.00 45.35 3.24
1800 1861 3.551496 CTTCCCCTTGCTCGCCACA 62.551 63.158 0.00 0.00 0.00 4.17
2139 2206 9.042008 GTACAGATTATTCAATGTTACACGGAT 57.958 33.333 0.00 0.00 0.00 4.18
2214 2281 2.698797 TCGGGAGAAGAAAACAGTGAGT 59.301 45.455 0.00 0.00 34.75 3.41
2216 2283 3.830744 TTCGGGAGAAGAAAACAGTGA 57.169 42.857 0.00 0.00 45.39 3.41
2234 2301 1.815003 CAGGGTGCAAAGACTGGATTC 59.185 52.381 0.00 0.00 0.00 2.52
2248 2315 4.597032 TGGAACAAAGGCAGGGTG 57.403 55.556 0.00 0.00 31.92 4.61
2260 2327 3.456277 ACTACTCCCATGGAAGATGGAAC 59.544 47.826 15.22 0.00 41.64 3.62
2261 2328 3.736094 ACTACTCCCATGGAAGATGGAA 58.264 45.455 15.22 0.00 41.64 3.53
2262 2329 3.421394 ACTACTCCCATGGAAGATGGA 57.579 47.619 15.22 0.00 41.64 3.41
2263 2330 5.307976 TGAATACTACTCCCATGGAAGATGG 59.692 44.000 15.22 0.48 38.88 3.51
2264 2331 6.425210 TGAATACTACTCCCATGGAAGATG 57.575 41.667 15.22 3.20 0.00 2.90
2265 2332 5.012561 GCTGAATACTACTCCCATGGAAGAT 59.987 44.000 15.22 0.00 0.00 2.40
2308 2375 1.656818 CCGATGCTTCAACGCCCAAT 61.657 55.000 0.08 0.00 0.00 3.16
2428 3210 9.190858 CATTTGTTAAATCTGTCCGATGAAAAA 57.809 29.630 0.00 0.00 31.20 1.94
2429 3211 7.328249 GCATTTGTTAAATCTGTCCGATGAAAA 59.672 33.333 0.00 0.00 31.20 2.29
2430 3212 6.806249 GCATTTGTTAAATCTGTCCGATGAAA 59.194 34.615 0.00 0.00 31.20 2.69
2438 3220 4.394920 TCTCCCGCATTTGTTAAATCTGTC 59.605 41.667 0.00 0.00 0.00 3.51
2459 3241 1.091771 CCACGCTTCCATTCGCATCT 61.092 55.000 0.00 0.00 0.00 2.90
2489 3271 2.278206 CGGTCCTCGTCTCGCATG 60.278 66.667 0.00 0.00 0.00 4.06
2510 3292 1.876156 CTCTCCACAGCAAAGTTGGTC 59.124 52.381 0.00 0.00 36.65 4.02
2532 3324 2.795175 TCCAATCTCGTATTCTCCGC 57.205 50.000 0.00 0.00 0.00 5.54
2575 3367 3.769300 GGGGTTGAGCAACATCCTTTTAT 59.231 43.478 14.55 0.00 42.85 1.40
2828 4807 1.718757 GCGCTGGAGTTGCCCTAATG 61.719 60.000 0.00 0.00 34.97 1.90
2844 4823 2.098870 GTCCGTTTTGATTAATCGCGC 58.901 47.619 10.80 0.00 0.00 6.86
2882 4861 7.797038 ATAGAGTAGTGTCCGTTTTGTTTTT 57.203 32.000 0.00 0.00 0.00 1.94
2883 4862 7.115378 CGTATAGAGTAGTGTCCGTTTTGTTTT 59.885 37.037 0.00 0.00 0.00 2.43
2884 4863 6.583806 CGTATAGAGTAGTGTCCGTTTTGTTT 59.416 38.462 0.00 0.00 0.00 2.83
2885 4864 6.088824 CGTATAGAGTAGTGTCCGTTTTGTT 58.911 40.000 0.00 0.00 0.00 2.83
2886 4865 5.182001 ACGTATAGAGTAGTGTCCGTTTTGT 59.818 40.000 0.00 0.00 0.00 2.83
2887 4866 5.634896 ACGTATAGAGTAGTGTCCGTTTTG 58.365 41.667 0.00 0.00 0.00 2.44
2888 4867 5.163713 GGACGTATAGAGTAGTGTCCGTTTT 60.164 44.000 0.00 0.00 36.84 2.43
2889 4868 4.333926 GGACGTATAGAGTAGTGTCCGTTT 59.666 45.833 0.00 0.00 36.84 3.60
2890 4869 3.873952 GGACGTATAGAGTAGTGTCCGTT 59.126 47.826 0.00 0.00 36.84 4.44
2891 4870 3.118629 TGGACGTATAGAGTAGTGTCCGT 60.119 47.826 4.90 0.00 46.88 4.69
2892 4871 3.461061 TGGACGTATAGAGTAGTGTCCG 58.539 50.000 4.90 0.00 46.88 4.79
2893 4872 4.701765 TCTGGACGTATAGAGTAGTGTCC 58.298 47.826 2.34 2.34 44.75 4.02
2894 4873 6.674694 TTTCTGGACGTATAGAGTAGTGTC 57.325 41.667 0.00 0.00 0.00 3.67
2895 4874 8.743085 TTATTTCTGGACGTATAGAGTAGTGT 57.257 34.615 0.00 0.00 0.00 3.55
2896 4875 8.291032 CCTTATTTCTGGACGTATAGAGTAGTG 58.709 40.741 0.00 0.00 0.00 2.74
2903 4882 5.209818 TGCCCTTATTTCTGGACGTATAG 57.790 43.478 0.00 0.00 0.00 1.31
2945 4924 1.153647 GATGCATCGTCCGGACACA 60.154 57.895 32.80 23.71 0.00 3.72
2970 4949 3.242641 GGGTTTACGGATTTCGAAGCATC 60.243 47.826 0.00 0.00 42.43 3.91
2978 4957 2.414138 CTGTGTCGGGTTTACGGATTTC 59.586 50.000 0.00 0.00 0.00 2.17
2981 4961 1.203994 CTCTGTGTCGGGTTTACGGAT 59.796 52.381 0.00 0.00 0.00 4.18
2999 4979 2.479566 TGTTGAAGATGCCCTCACTC 57.520 50.000 0.00 0.00 0.00 3.51
3000 4980 2.508526 GTTGTTGAAGATGCCCTCACT 58.491 47.619 0.00 0.00 0.00 3.41
3001 4981 1.541588 GGTTGTTGAAGATGCCCTCAC 59.458 52.381 0.00 0.00 0.00 3.51
3007 4987 0.452784 GTCGCGGTTGTTGAAGATGC 60.453 55.000 6.13 0.00 0.00 3.91
3024 5004 3.723348 GCGGAACTTGTGCGGGTC 61.723 66.667 0.00 0.00 42.17 4.46
3029 5009 0.800012 TTTATCCGCGGAACTTGTGC 59.200 50.000 34.66 0.00 0.00 4.57
3030 5010 2.739913 TCTTTTATCCGCGGAACTTGTG 59.260 45.455 34.66 19.89 0.00 3.33
3031 5011 3.048337 TCTTTTATCCGCGGAACTTGT 57.952 42.857 34.66 18.39 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.