Multiple sequence alignment - TraesCS6A01G218600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G218600 chr6A 100.000 6620 0 0 1 6620 404683689 404690308 0.000000e+00 12225.0
1 TraesCS6A01G218600 chr6D 94.035 3118 118 29 963 4028 284390117 284393218 0.000000e+00 4665.0
2 TraesCS6A01G218600 chr6D 95.047 2019 82 8 4110 6119 284393216 284395225 0.000000e+00 3158.0
3 TraesCS6A01G218600 chr6D 82.156 538 70 12 4 524 284253222 284253750 7.880000e-119 438.0
4 TraesCS6A01G218600 chr6D 97.368 190 5 0 6418 6607 284395490 284395679 2.300000e-84 324.0
5 TraesCS6A01G218600 chr6D 96.063 127 5 0 709 835 284389984 284390110 2.420000e-49 207.0
6 TraesCS6A01G218600 chr6B 94.478 2517 85 13 4110 6620 444907591 444910059 0.000000e+00 3829.0
7 TraesCS6A01G218600 chr6B 95.102 1572 63 5 2462 4028 444906031 444907593 0.000000e+00 2464.0
8 TraesCS6A01G218600 chr6B 95.533 806 26 5 1683 2480 444905216 444906019 0.000000e+00 1280.0
9 TraesCS6A01G218600 chr6B 94.391 731 18 5 955 1667 444904415 444905140 0.000000e+00 1101.0
10 TraesCS6A01G218600 chr6B 92.969 128 9 0 708 835 444904294 444904421 3.150000e-43 187.0
11 TraesCS6A01G218600 chr6B 97.727 88 2 0 4025 4112 617177204 617177291 1.150000e-32 152.0
12 TraesCS6A01G218600 chr6B 97.222 36 1 0 607 642 169168151 169168186 1.990000e-05 62.1
13 TraesCS6A01G218600 chr6B 100.000 32 0 0 611 642 594344630 594344661 7.170000e-05 60.2
14 TraesCS6A01G218600 chr1D 78.788 528 82 17 1 504 452861396 452860875 1.780000e-85 327.0
15 TraesCS6A01G218600 chr4D 79.521 459 71 15 45 486 343562871 343562419 8.340000e-79 305.0
16 TraesCS6A01G218600 chr4D 76.762 525 93 19 1 504 476336245 476336761 3.940000e-67 267.0
17 TraesCS6A01G218600 chr4D 76.096 456 89 10 64 504 499225231 499225681 3.110000e-53 220.0
18 TraesCS6A01G218600 chr4D 96.591 88 3 0 4024 4111 28237807 28237894 5.350000e-31 147.0
19 TraesCS6A01G218600 chr7B 79.379 451 72 15 46 481 558889287 558889731 1.400000e-76 298.0
20 TraesCS6A01G218600 chr7B 91.919 99 5 2 4013 4111 213903246 213903151 1.160000e-27 135.0
21 TraesCS6A01G218600 chr7B 88.000 50 1 1 5858 5907 713109650 713109694 3.000000e-03 54.7
22 TraesCS6A01G218600 chr7D 77.883 529 81 24 1 502 247306152 247306671 5.020000e-76 296.0
23 TraesCS6A01G218600 chr7D 78.771 358 58 14 45 394 210055477 210055130 2.400000e-54 224.0
24 TraesCS6A01G218600 chr7D 79.808 312 50 10 49 352 10749432 10749126 1.450000e-51 215.0
25 TraesCS6A01G218600 chr7D 94.505 91 5 0 4026 4116 81910954 81911044 2.490000e-29 141.0
26 TraesCS6A01G218600 chr7D 90.566 106 8 2 4025 4129 414277684 414277580 8.950000e-29 139.0
27 TraesCS6A01G218600 chr7D 100.000 28 0 0 615 642 231386940 231386913 1.200000e-02 52.8
28 TraesCS6A01G218600 chr4A 77.419 465 90 10 45 501 576920265 576919808 5.090000e-66 263.0
29 TraesCS6A01G218600 chr5A 80.282 355 57 12 5 348 441469714 441469362 8.520000e-64 255.0
30 TraesCS6A01G218600 chr5A 96.800 125 3 1 836 959 51738590 51738714 2.420000e-49 207.0
31 TraesCS6A01G218600 chr7A 96.875 128 4 0 835 962 717823099 717822972 1.450000e-51 215.0
32 TraesCS6A01G218600 chr7A 96.063 127 4 1 833 958 620199732 620199858 8.700000e-49 206.0
33 TraesCS6A01G218600 chr7A 78.188 298 58 7 210 502 15033516 15033811 4.080000e-42 183.0
34 TraesCS6A01G218600 chr7A 95.652 92 4 0 4023 4114 184126827 184126736 1.490000e-31 148.0
35 TraesCS6A01G218600 chr7A 96.591 88 3 0 4025 4112 83936105 83936192 5.350000e-31 147.0
36 TraesCS6A01G218600 chr1B 98.347 121 2 0 835 955 299981707 299981587 5.200000e-51 213.0
37 TraesCS6A01G218600 chr3B 98.333 120 2 0 836 955 654654335 654654216 1.870000e-50 211.0
38 TraesCS6A01G218600 chr3B 80.745 161 28 3 347 505 643262168 643262327 9.010000e-24 122.0
39 TraesCS6A01G218600 chr2B 98.333 120 2 0 836 955 103257519 103257400 1.870000e-50 211.0
40 TraesCS6A01G218600 chr2B 98.333 120 2 0 836 955 437818999 437818880 1.870000e-50 211.0
41 TraesCS6A01G218600 chr2B 100.000 28 0 0 643 670 121483873 121483900 1.200000e-02 52.8
42 TraesCS6A01G218600 chr3A 97.521 121 3 0 835 955 580595605 580595485 2.420000e-49 207.0
43 TraesCS6A01G218600 chr5D 76.123 423 83 10 1 406 52402837 52402416 8.700000e-49 206.0
44 TraesCS6A01G218600 chr5D 97.500 120 3 0 836 955 312371291 312371410 8.700000e-49 206.0
45 TraesCS6A01G218600 chr2D 96.552 87 3 0 4026 4112 353281056 353280970 1.920000e-30 145.0
46 TraesCS6A01G218600 chr2D 91.919 99 8 0 4018 4116 307490179 307490081 8.950000e-29 139.0
47 TraesCS6A01G218600 chr4B 100.000 31 0 0 611 641 540764370 540764340 2.580000e-04 58.4
48 TraesCS6A01G218600 chr2A 100.000 31 0 0 612 642 540630431 540630461 2.580000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G218600 chr6A 404683689 404690308 6619 False 12225.0 12225 100.00000 1 6620 1 chr6A.!!$F1 6619
1 TraesCS6A01G218600 chr6D 284389984 284395679 5695 False 2088.5 4665 95.62825 709 6607 4 chr6D.!!$F2 5898
2 TraesCS6A01G218600 chr6D 284253222 284253750 528 False 438.0 438 82.15600 4 524 1 chr6D.!!$F1 520
3 TraesCS6A01G218600 chr6B 444904294 444910059 5765 False 1772.2 3829 94.49460 708 6620 5 chr6B.!!$F4 5912
4 TraesCS6A01G218600 chr1D 452860875 452861396 521 True 327.0 327 78.78800 1 504 1 chr1D.!!$R1 503
5 TraesCS6A01G218600 chr4D 476336245 476336761 516 False 267.0 267 76.76200 1 504 1 chr4D.!!$F2 503
6 TraesCS6A01G218600 chr7D 247306152 247306671 519 False 296.0 296 77.88300 1 502 1 chr7D.!!$F2 501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
632 662 0.030101 GCCGGATCAGTCTCTCGAAG 59.970 60.0 5.05 0.0 0.00 3.79 F
897 927 0.033503 TGACTCATAGGCCCGACTGA 60.034 55.0 0.00 0.0 0.00 3.41 F
953 983 0.099082 CCGTACGTCAGAGGAGCTTC 59.901 60.0 15.21 0.0 0.00 3.86 F
1468 1522 0.107410 ATTACGCTTCGGGGCATGAA 60.107 50.0 0.00 0.0 0.00 2.57 F
1470 1524 0.107410 TACGCTTCGGGGCATGAAAT 60.107 50.0 0.00 0.0 0.00 2.17 F
3271 3444 0.034186 TGCCCATACTGCCCTTTCAG 60.034 55.0 0.00 0.0 39.86 3.02 F
4041 4219 0.042131 ACATACTCCCTCCGTCCCAA 59.958 55.0 0.00 0.0 0.00 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1475 1529 1.419381 AATCCCAACCAAACCACCAC 58.581 50.000 0.00 0.0 0.00 4.16 R
2336 2475 3.136077 AGACATCAGCAAGCAGGTCATAT 59.864 43.478 0.00 0.0 0.00 1.78 R
2766 2939 4.076394 GGTTACAATTTGCAGGTGACCTA 58.924 43.478 2.59 0.0 37.97 3.08 R
3253 3426 0.034089 ACTGAAAGGGCAGTATGGGC 60.034 55.000 0.00 0.0 46.67 5.36 R
3380 3558 3.188460 GCTCAAAACAGAAATAGACCGCA 59.812 43.478 0.00 0.0 0.00 5.69 R
4093 4271 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.0 0.00 3.28 R
5882 6064 0.252330 TCCCTCCGTCCCACAATGTA 60.252 55.000 0.00 0.0 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 73 7.442969 TCACAAAAATTAGGTCGAACACATAGT 59.557 33.333 1.87 0.00 0.00 2.12
61 77 4.465632 TTAGGTCGAACACATAGTGCAT 57.534 40.909 1.87 0.00 36.98 3.96
64 80 3.000041 GGTCGAACACATAGTGCATGAA 59.000 45.455 0.00 0.00 38.10 2.57
84 100 4.329545 GGAGCCCGTGAGTTGCCA 62.330 66.667 0.00 0.00 0.00 4.92
92 108 0.039437 CGTGAGTTGCCAGACGTACT 60.039 55.000 0.00 0.00 0.00 2.73
95 111 0.319555 GAGTTGCCAGACGTACTGCA 60.320 55.000 8.85 5.56 44.52 4.41
96 112 0.105964 AGTTGCCAGACGTACTGCAA 59.894 50.000 12.43 12.43 44.52 4.08
159 175 0.323816 AGAGAGGAGTGATGTGCCGA 60.324 55.000 0.00 0.00 0.00 5.54
237 253 2.817834 CGGATGCCGCGGAAAAGA 60.818 61.111 33.48 6.51 41.17 2.52
279 295 1.764854 GATCCGGTAGGGCAAGGGA 60.765 63.158 0.00 0.00 38.33 4.20
280 296 1.073706 ATCCGGTAGGGCAAGGGAT 60.074 57.895 0.00 0.00 38.33 3.85
281 297 0.192566 ATCCGGTAGGGCAAGGGATA 59.807 55.000 0.00 0.00 35.79 2.59
322 339 2.424733 GGTAGGGCTGTCGGGTCTC 61.425 68.421 0.00 0.00 0.00 3.36
354 372 3.625897 CCGAGCGGCCCATATCCA 61.626 66.667 0.00 0.00 0.00 3.41
358 376 1.539869 AGCGGCCCATATCCATCCT 60.540 57.895 0.00 0.00 0.00 3.24
365 383 5.221843 GCGGCCCATATCCATCCTATATTTA 60.222 44.000 0.00 0.00 0.00 1.40
380 398 5.892119 CCTATATTTAGGCTGGATACGAGGA 59.108 44.000 0.00 0.00 38.75 3.71
454 483 2.283388 TCAGTTACCGGGCCGTCT 60.283 61.111 26.32 14.11 0.00 4.18
476 505 4.397832 GGGCGTTTGAGGCGGGTA 62.398 66.667 0.00 0.00 37.59 3.69
504 534 1.971357 CCCGGGTGTAGATGCTCTTAT 59.029 52.381 14.18 0.00 0.00 1.73
505 535 3.162666 CCCGGGTGTAGATGCTCTTATA 58.837 50.000 14.18 0.00 0.00 0.98
506 536 3.769844 CCCGGGTGTAGATGCTCTTATAT 59.230 47.826 14.18 0.00 0.00 0.86
507 537 4.954202 CCCGGGTGTAGATGCTCTTATATA 59.046 45.833 14.18 0.00 0.00 0.86
508 538 5.067936 CCCGGGTGTAGATGCTCTTATATAG 59.932 48.000 14.18 0.00 0.00 1.31
544 574 4.882842 AAAAACTTGTGTGAACCAACCT 57.117 36.364 0.00 0.00 0.00 3.50
545 575 3.866883 AAACTTGTGTGAACCAACCTG 57.133 42.857 0.00 0.00 0.00 4.00
546 576 2.507407 ACTTGTGTGAACCAACCTGT 57.493 45.000 0.00 0.00 0.00 4.00
547 577 3.637911 ACTTGTGTGAACCAACCTGTA 57.362 42.857 0.00 0.00 0.00 2.74
548 578 3.541632 ACTTGTGTGAACCAACCTGTAG 58.458 45.455 0.00 0.00 0.00 2.74
549 579 3.054655 ACTTGTGTGAACCAACCTGTAGT 60.055 43.478 0.00 0.00 0.00 2.73
550 580 3.637911 TGTGTGAACCAACCTGTAGTT 57.362 42.857 0.00 0.00 40.16 2.24
551 581 4.757019 TGTGTGAACCAACCTGTAGTTA 57.243 40.909 0.00 0.00 36.18 2.24
552 582 4.699637 TGTGTGAACCAACCTGTAGTTAG 58.300 43.478 0.00 0.00 36.18 2.34
553 583 4.406326 TGTGTGAACCAACCTGTAGTTAGA 59.594 41.667 0.00 0.00 36.18 2.10
554 584 5.071250 TGTGTGAACCAACCTGTAGTTAGAT 59.929 40.000 0.00 0.00 36.18 1.98
555 585 5.408604 GTGTGAACCAACCTGTAGTTAGATG 59.591 44.000 0.00 0.00 36.18 2.90
556 586 5.305902 TGTGAACCAACCTGTAGTTAGATGA 59.694 40.000 0.00 0.00 36.18 2.92
557 587 6.013725 TGTGAACCAACCTGTAGTTAGATGAT 60.014 38.462 0.00 0.00 36.18 2.45
558 588 6.879458 GTGAACCAACCTGTAGTTAGATGATT 59.121 38.462 0.00 0.00 36.18 2.57
559 589 8.038944 GTGAACCAACCTGTAGTTAGATGATTA 58.961 37.037 0.00 0.00 36.18 1.75
560 590 8.258007 TGAACCAACCTGTAGTTAGATGATTAG 58.742 37.037 0.00 0.00 36.18 1.73
561 591 7.973048 ACCAACCTGTAGTTAGATGATTAGA 57.027 36.000 0.00 0.00 36.18 2.10
562 592 8.012957 ACCAACCTGTAGTTAGATGATTAGAG 57.987 38.462 0.00 0.00 36.18 2.43
563 593 7.839705 ACCAACCTGTAGTTAGATGATTAGAGA 59.160 37.037 0.00 0.00 36.18 3.10
564 594 8.356657 CCAACCTGTAGTTAGATGATTAGAGAG 58.643 40.741 0.00 0.00 36.18 3.20
565 595 9.126151 CAACCTGTAGTTAGATGATTAGAGAGA 57.874 37.037 0.00 0.00 36.18 3.10
566 596 8.685838 ACCTGTAGTTAGATGATTAGAGAGAC 57.314 38.462 0.00 0.00 0.00 3.36
567 597 8.275758 ACCTGTAGTTAGATGATTAGAGAGACA 58.724 37.037 0.00 0.00 0.00 3.41
568 598 8.783093 CCTGTAGTTAGATGATTAGAGAGACAG 58.217 40.741 0.00 0.00 0.00 3.51
569 599 9.337396 CTGTAGTTAGATGATTAGAGAGACAGT 57.663 37.037 0.00 0.00 0.00 3.55
570 600 9.114952 TGTAGTTAGATGATTAGAGAGACAGTG 57.885 37.037 0.00 0.00 0.00 3.66
571 601 9.332502 GTAGTTAGATGATTAGAGAGACAGTGA 57.667 37.037 0.00 0.00 0.00 3.41
572 602 8.995027 AGTTAGATGATTAGAGAGACAGTGAT 57.005 34.615 0.00 0.00 0.00 3.06
576 606 8.579850 AGATGATTAGAGAGACAGTGATATCC 57.420 38.462 0.00 0.00 0.00 2.59
577 607 8.169393 AGATGATTAGAGAGACAGTGATATCCA 58.831 37.037 0.00 0.00 0.00 3.41
578 608 7.517614 TGATTAGAGAGACAGTGATATCCAC 57.482 40.000 0.00 0.00 46.03 4.02
586 616 3.403936 GTGATATCCACAGCCCACC 57.596 57.895 0.00 0.00 45.03 4.61
587 617 0.546122 GTGATATCCACAGCCCACCA 59.454 55.000 0.00 0.00 45.03 4.17
588 618 0.839277 TGATATCCACAGCCCACCAG 59.161 55.000 0.00 0.00 0.00 4.00
589 619 0.109342 GATATCCACAGCCCACCAGG 59.891 60.000 0.00 0.00 39.47 4.45
590 620 0.624500 ATATCCACAGCCCACCAGGT 60.625 55.000 0.00 0.00 38.26 4.00
591 621 0.844661 TATCCACAGCCCACCAGGTT 60.845 55.000 0.00 0.00 38.26 3.50
592 622 1.729267 ATCCACAGCCCACCAGGTTT 61.729 55.000 0.00 0.00 38.26 3.27
593 623 1.903404 CCACAGCCCACCAGGTTTC 60.903 63.158 0.00 0.00 38.26 2.78
594 624 1.152777 CACAGCCCACCAGGTTTCA 60.153 57.895 0.00 0.00 38.26 2.69
595 625 0.754957 CACAGCCCACCAGGTTTCAA 60.755 55.000 0.00 0.00 38.26 2.69
596 626 0.468029 ACAGCCCACCAGGTTTCAAG 60.468 55.000 0.00 0.00 38.26 3.02
597 627 0.468029 CAGCCCACCAGGTTTCAAGT 60.468 55.000 0.00 0.00 38.26 3.16
598 628 0.178990 AGCCCACCAGGTTTCAAGTC 60.179 55.000 0.00 0.00 38.26 3.01
599 629 1.179174 GCCCACCAGGTTTCAAGTCC 61.179 60.000 0.00 0.00 38.26 3.85
600 630 0.478507 CCCACCAGGTTTCAAGTCCT 59.521 55.000 0.00 0.00 33.96 3.85
608 638 5.376854 CAGGTTTCAAGTCCTGGTAAATG 57.623 43.478 3.58 0.00 45.11 2.32
609 639 5.070001 CAGGTTTCAAGTCCTGGTAAATGA 58.930 41.667 3.58 0.00 45.11 2.57
610 640 5.048713 CAGGTTTCAAGTCCTGGTAAATGAC 60.049 44.000 3.58 0.00 45.11 3.06
611 641 4.825085 GGTTTCAAGTCCTGGTAAATGACA 59.175 41.667 0.00 0.00 0.00 3.58
612 642 5.476945 GGTTTCAAGTCCTGGTAAATGACAT 59.523 40.000 0.00 0.00 0.00 3.06
613 643 6.381801 GTTTCAAGTCCTGGTAAATGACATG 58.618 40.000 0.00 0.00 0.00 3.21
614 644 4.009675 TCAAGTCCTGGTAAATGACATGC 58.990 43.478 0.00 0.00 30.18 4.06
615 645 3.004752 AGTCCTGGTAAATGACATGCC 57.995 47.619 0.00 0.00 0.00 4.40
616 646 1.670811 GTCCTGGTAAATGACATGCCG 59.329 52.381 0.00 0.00 0.00 5.69
617 647 1.024271 CCTGGTAAATGACATGCCGG 58.976 55.000 0.00 0.00 0.00 6.13
618 648 1.408127 CCTGGTAAATGACATGCCGGA 60.408 52.381 5.05 0.00 0.00 5.14
619 649 2.575532 CTGGTAAATGACATGCCGGAT 58.424 47.619 5.05 0.00 0.00 4.18
620 650 2.549754 CTGGTAAATGACATGCCGGATC 59.450 50.000 5.05 0.00 0.00 3.36
621 651 2.092699 TGGTAAATGACATGCCGGATCA 60.093 45.455 5.05 2.63 0.00 2.92
622 652 2.549754 GGTAAATGACATGCCGGATCAG 59.450 50.000 5.05 0.00 0.00 2.90
623 653 2.425143 AAATGACATGCCGGATCAGT 57.575 45.000 5.05 0.00 0.00 3.41
624 654 1.959042 AATGACATGCCGGATCAGTC 58.041 50.000 5.05 7.77 0.00 3.51
625 655 1.126488 ATGACATGCCGGATCAGTCT 58.874 50.000 5.05 0.00 0.00 3.24
626 656 0.461548 TGACATGCCGGATCAGTCTC 59.538 55.000 5.05 0.00 0.00 3.36
627 657 0.749649 GACATGCCGGATCAGTCTCT 59.250 55.000 5.05 0.00 0.00 3.10
628 658 0.749649 ACATGCCGGATCAGTCTCTC 59.250 55.000 5.05 0.00 0.00 3.20
629 659 0.318529 CATGCCGGATCAGTCTCTCG 60.319 60.000 5.05 0.00 0.00 4.04
630 660 0.466372 ATGCCGGATCAGTCTCTCGA 60.466 55.000 5.05 0.00 0.00 4.04
631 661 0.679960 TGCCGGATCAGTCTCTCGAA 60.680 55.000 5.05 0.00 0.00 3.71
632 662 0.030101 GCCGGATCAGTCTCTCGAAG 59.970 60.000 5.05 0.00 0.00 3.79
633 663 0.665835 CCGGATCAGTCTCTCGAAGG 59.334 60.000 0.00 0.00 0.00 3.46
634 664 1.384525 CGGATCAGTCTCTCGAAGGT 58.615 55.000 0.00 0.00 0.00 3.50
635 665 1.064803 CGGATCAGTCTCTCGAAGGTG 59.935 57.143 0.00 0.00 0.00 4.00
636 666 1.202359 GGATCAGTCTCTCGAAGGTGC 60.202 57.143 0.00 0.00 0.00 5.01
637 667 1.748493 GATCAGTCTCTCGAAGGTGCT 59.252 52.381 0.00 0.00 0.00 4.40
638 668 1.169577 TCAGTCTCTCGAAGGTGCTC 58.830 55.000 0.00 0.00 0.00 4.26
639 669 0.884514 CAGTCTCTCGAAGGTGCTCA 59.115 55.000 0.00 0.00 0.00 4.26
640 670 1.476085 CAGTCTCTCGAAGGTGCTCAT 59.524 52.381 0.00 0.00 0.00 2.90
641 671 2.685388 CAGTCTCTCGAAGGTGCTCATA 59.315 50.000 0.00 0.00 0.00 2.15
642 672 3.317711 CAGTCTCTCGAAGGTGCTCATAT 59.682 47.826 0.00 0.00 0.00 1.78
643 673 3.317711 AGTCTCTCGAAGGTGCTCATATG 59.682 47.826 0.00 0.00 0.00 1.78
644 674 2.035193 TCTCTCGAAGGTGCTCATATGC 59.965 50.000 0.00 0.00 0.00 3.14
645 675 1.135046 CTCGAAGGTGCTCATATGCG 58.865 55.000 0.00 0.00 35.36 4.73
646 676 0.459899 TCGAAGGTGCTCATATGCGT 59.540 50.000 0.00 0.00 35.36 5.24
647 677 1.134818 TCGAAGGTGCTCATATGCGTT 60.135 47.619 0.00 0.00 35.36 4.84
648 678 1.258982 CGAAGGTGCTCATATGCGTTC 59.741 52.381 0.00 1.19 35.36 3.95
649 679 2.279741 GAAGGTGCTCATATGCGTTCA 58.720 47.619 0.00 0.00 35.36 3.18
650 680 2.627515 AGGTGCTCATATGCGTTCAT 57.372 45.000 0.00 0.00 36.73 2.57
651 681 3.751479 AGGTGCTCATATGCGTTCATA 57.249 42.857 0.00 0.00 39.31 2.15
652 682 4.277515 AGGTGCTCATATGCGTTCATAT 57.722 40.909 0.00 0.00 44.48 1.78
660 690 4.623932 ATATGCGTTCATATGGGTGAGT 57.376 40.909 2.13 0.00 42.61 3.41
661 691 2.022764 TGCGTTCATATGGGTGAGTG 57.977 50.000 2.13 0.00 0.00 3.51
662 692 1.277842 TGCGTTCATATGGGTGAGTGT 59.722 47.619 2.13 0.00 0.00 3.55
663 693 2.498078 TGCGTTCATATGGGTGAGTGTA 59.502 45.455 2.13 0.00 0.00 2.90
664 694 3.133901 TGCGTTCATATGGGTGAGTGTAT 59.866 43.478 2.13 0.00 0.00 2.29
665 695 3.494626 GCGTTCATATGGGTGAGTGTATG 59.505 47.826 2.13 0.00 0.00 2.39
666 696 4.739436 GCGTTCATATGGGTGAGTGTATGA 60.739 45.833 2.13 0.00 33.16 2.15
667 697 4.984785 CGTTCATATGGGTGAGTGTATGAG 59.015 45.833 2.13 0.00 35.63 2.90
668 698 4.607293 TCATATGGGTGAGTGTATGAGC 57.393 45.455 2.13 0.00 31.80 4.26
669 699 3.005791 TCATATGGGTGAGTGTATGAGCG 59.994 47.826 2.13 0.00 31.80 5.03
670 700 1.195115 ATGGGTGAGTGTATGAGCGT 58.805 50.000 0.00 0.00 0.00 5.07
671 701 1.842052 TGGGTGAGTGTATGAGCGTA 58.158 50.000 0.00 0.00 0.00 4.42
672 702 2.172679 TGGGTGAGTGTATGAGCGTAA 58.827 47.619 0.00 0.00 0.00 3.18
673 703 2.165641 TGGGTGAGTGTATGAGCGTAAG 59.834 50.000 0.00 0.00 43.44 2.34
674 704 2.165845 GGGTGAGTGTATGAGCGTAAGT 59.834 50.000 0.00 0.00 41.68 2.24
675 705 3.379372 GGGTGAGTGTATGAGCGTAAGTA 59.621 47.826 0.00 0.00 41.68 2.24
676 706 4.037684 GGGTGAGTGTATGAGCGTAAGTAT 59.962 45.833 0.00 0.00 41.68 2.12
677 707 4.976731 GGTGAGTGTATGAGCGTAAGTATG 59.023 45.833 0.00 0.00 41.68 2.39
678 708 5.220989 GGTGAGTGTATGAGCGTAAGTATGA 60.221 44.000 0.00 0.00 41.68 2.15
679 709 5.910166 GTGAGTGTATGAGCGTAAGTATGAG 59.090 44.000 0.00 0.00 41.68 2.90
680 710 4.861210 AGTGTATGAGCGTAAGTATGAGC 58.139 43.478 0.00 0.00 41.68 4.26
681 711 3.664486 GTGTATGAGCGTAAGTATGAGCG 59.336 47.826 0.00 0.00 41.68 5.03
687 717 3.755041 GCGTAAGTATGAGCGCTTAAG 57.245 47.619 13.26 1.85 45.48 1.85
688 718 2.471743 GCGTAAGTATGAGCGCTTAAGG 59.528 50.000 13.26 0.00 45.48 2.69
689 719 2.471743 CGTAAGTATGAGCGCTTAAGGC 59.528 50.000 13.26 6.24 37.64 4.35
690 720 2.990066 AAGTATGAGCGCTTAAGGCT 57.010 45.000 13.26 15.62 45.00 4.58
691 721 2.231215 AGTATGAGCGCTTAAGGCTG 57.769 50.000 13.26 4.55 41.72 4.85
692 722 1.482593 AGTATGAGCGCTTAAGGCTGT 59.517 47.619 13.26 11.90 41.72 4.40
693 723 1.594862 GTATGAGCGCTTAAGGCTGTG 59.405 52.381 13.26 0.00 41.72 3.66
694 724 1.372087 ATGAGCGCTTAAGGCTGTGC 61.372 55.000 13.26 6.54 41.72 4.57
695 725 2.348998 AGCGCTTAAGGCTGTGCT 59.651 55.556 2.64 5.63 44.00 4.40
696 726 2.037136 AGCGCTTAAGGCTGTGCTG 61.037 57.895 2.64 3.33 46.50 4.41
697 727 2.034879 GCGCTTAAGGCTGTGCTGA 61.035 57.895 0.00 0.00 39.13 4.26
698 728 1.372087 GCGCTTAAGGCTGTGCTGAT 61.372 55.000 0.00 0.00 39.13 2.90
699 729 0.376152 CGCTTAAGGCTGTGCTGATG 59.624 55.000 4.29 0.00 39.13 3.07
700 730 1.457346 GCTTAAGGCTGTGCTGATGT 58.543 50.000 4.29 0.00 38.06 3.06
701 731 1.815003 GCTTAAGGCTGTGCTGATGTT 59.185 47.619 4.29 0.00 38.06 2.71
702 732 3.009723 GCTTAAGGCTGTGCTGATGTTA 58.990 45.455 4.29 0.00 38.06 2.41
703 733 3.440173 GCTTAAGGCTGTGCTGATGTTAA 59.560 43.478 4.29 0.00 38.06 2.01
704 734 4.082787 GCTTAAGGCTGTGCTGATGTTAAA 60.083 41.667 4.29 0.00 38.06 1.52
705 735 5.564651 GCTTAAGGCTGTGCTGATGTTAAAA 60.565 40.000 4.29 0.00 38.06 1.52
706 736 4.935352 AAGGCTGTGCTGATGTTAAAAA 57.065 36.364 0.00 0.00 0.00 1.94
757 787 1.635663 GGACTTCCAATCGTGGCACG 61.636 60.000 32.75 32.75 45.54 5.34
792 822 1.595109 CACTCGTCAGTGGCAGCAA 60.595 57.895 0.00 0.00 45.75 3.91
839 869 4.379243 AGCACTCCCGCTTGGACG 62.379 66.667 0.00 0.00 39.99 4.79
840 870 4.373116 GCACTCCCGCTTGGACGA 62.373 66.667 0.00 0.00 38.61 4.20
841 871 2.125912 CACTCCCGCTTGGACGAG 60.126 66.667 0.00 0.00 38.61 4.18
842 872 3.382832 ACTCCCGCTTGGACGAGG 61.383 66.667 0.00 0.00 38.61 4.63
843 873 3.068691 CTCCCGCTTGGACGAGGA 61.069 66.667 0.00 0.00 38.61 3.71
844 874 2.363795 TCCCGCTTGGACGAGGAT 60.364 61.111 0.00 0.00 38.61 3.24
845 875 2.107141 CCCGCTTGGACGAGGATC 59.893 66.667 0.00 0.00 35.39 3.36
846 876 2.107141 CCGCTTGGACGAGGATCC 59.893 66.667 2.48 2.48 39.45 3.36
847 877 2.107141 CGCTTGGACGAGGATCCC 59.893 66.667 8.55 0.00 38.06 3.85
848 878 2.506472 GCTTGGACGAGGATCCCC 59.494 66.667 8.55 2.57 38.06 4.81
850 880 1.826024 CTTGGACGAGGATCCCCTG 59.174 63.158 8.55 0.45 44.53 4.45
851 881 2.317149 CTTGGACGAGGATCCCCTGC 62.317 65.000 8.55 0.00 44.53 4.85
852 882 3.551407 GGACGAGGATCCCCTGCC 61.551 72.222 8.55 1.52 44.53 4.85
853 883 3.917760 GACGAGGATCCCCTGCCG 61.918 72.222 8.55 7.30 44.53 5.69
854 884 4.779733 ACGAGGATCCCCTGCCGT 62.780 66.667 8.55 7.95 44.53 5.68
855 885 4.227134 CGAGGATCCCCTGCCGTG 62.227 72.222 8.55 0.00 44.53 4.94
856 886 4.554036 GAGGATCCCCTGCCGTGC 62.554 72.222 8.55 0.00 44.53 5.34
882 912 4.719369 GCCGTTCCGTCGCTGACT 62.719 66.667 7.03 0.00 0.00 3.41
883 913 2.504244 CCGTTCCGTCGCTGACTC 60.504 66.667 7.03 0.00 0.00 3.36
884 914 2.254350 CGTTCCGTCGCTGACTCA 59.746 61.111 7.03 0.00 0.00 3.41
885 915 1.154016 CGTTCCGTCGCTGACTCAT 60.154 57.895 7.03 0.00 0.00 2.90
886 916 0.098200 CGTTCCGTCGCTGACTCATA 59.902 55.000 7.03 0.00 0.00 2.15
887 917 1.828832 GTTCCGTCGCTGACTCATAG 58.171 55.000 7.03 0.00 0.00 2.23
888 918 0.738975 TTCCGTCGCTGACTCATAGG 59.261 55.000 7.03 1.71 0.00 2.57
889 919 1.299468 CCGTCGCTGACTCATAGGC 60.299 63.158 7.03 0.00 0.00 3.93
890 920 1.299468 CGTCGCTGACTCATAGGCC 60.299 63.158 0.00 0.00 0.00 5.19
891 921 1.068250 GTCGCTGACTCATAGGCCC 59.932 63.158 0.00 0.00 0.00 5.80
892 922 2.028190 CGCTGACTCATAGGCCCG 59.972 66.667 0.00 0.00 0.00 6.13
893 923 2.490148 CGCTGACTCATAGGCCCGA 61.490 63.158 0.00 0.00 0.00 5.14
894 924 1.068250 GCTGACTCATAGGCCCGAC 59.932 63.158 0.00 0.00 0.00 4.79
895 925 1.395826 GCTGACTCATAGGCCCGACT 61.396 60.000 0.00 0.00 0.00 4.18
896 926 0.387202 CTGACTCATAGGCCCGACTG 59.613 60.000 0.00 0.00 0.00 3.51
897 927 0.033503 TGACTCATAGGCCCGACTGA 60.034 55.000 0.00 0.00 0.00 3.41
898 928 1.112113 GACTCATAGGCCCGACTGAA 58.888 55.000 0.00 0.00 0.00 3.02
899 929 1.480954 GACTCATAGGCCCGACTGAAA 59.519 52.381 0.00 0.00 0.00 2.69
900 930 2.103263 GACTCATAGGCCCGACTGAAAT 59.897 50.000 0.00 0.00 0.00 2.17
901 931 2.505819 ACTCATAGGCCCGACTGAAATT 59.494 45.455 0.00 0.00 0.00 1.82
902 932 3.054361 ACTCATAGGCCCGACTGAAATTT 60.054 43.478 0.00 0.00 0.00 1.82
903 933 3.278574 TCATAGGCCCGACTGAAATTTG 58.721 45.455 0.00 0.00 0.00 2.32
904 934 3.054728 TCATAGGCCCGACTGAAATTTGA 60.055 43.478 0.00 0.00 0.00 2.69
905 935 1.534729 AGGCCCGACTGAAATTTGAC 58.465 50.000 0.00 0.00 0.00 3.18
906 936 0.526211 GGCCCGACTGAAATTTGACC 59.474 55.000 0.00 0.00 0.00 4.02
907 937 0.526211 GCCCGACTGAAATTTGACCC 59.474 55.000 0.00 0.00 0.00 4.46
908 938 1.904287 CCCGACTGAAATTTGACCCA 58.096 50.000 0.00 0.00 0.00 4.51
909 939 1.539827 CCCGACTGAAATTTGACCCAC 59.460 52.381 0.00 0.00 0.00 4.61
910 940 1.539827 CCGACTGAAATTTGACCCACC 59.460 52.381 0.00 0.00 0.00 4.61
911 941 2.504367 CGACTGAAATTTGACCCACCT 58.496 47.619 0.00 0.00 0.00 4.00
912 942 2.226437 CGACTGAAATTTGACCCACCTG 59.774 50.000 0.00 0.00 0.00 4.00
913 943 3.222603 GACTGAAATTTGACCCACCTGT 58.777 45.455 0.00 0.00 0.00 4.00
914 944 3.222603 ACTGAAATTTGACCCACCTGTC 58.777 45.455 0.00 0.00 35.77 3.51
915 945 3.221771 CTGAAATTTGACCCACCTGTCA 58.778 45.455 0.00 0.00 43.26 3.58
916 946 3.221771 TGAAATTTGACCCACCTGTCAG 58.778 45.455 0.00 0.00 45.37 3.51
917 947 3.222603 GAAATTTGACCCACCTGTCAGT 58.777 45.455 0.00 0.00 45.37 3.41
918 948 2.276732 ATTTGACCCACCTGTCAGTG 57.723 50.000 0.00 0.00 45.37 3.66
925 955 3.233355 CACCTGTCAGTGGCCTAAC 57.767 57.895 3.32 0.00 33.95 2.34
926 956 0.670546 CACCTGTCAGTGGCCTAACG 60.671 60.000 3.32 0.00 33.95 3.18
927 957 1.079127 CCTGTCAGTGGCCTAACGG 60.079 63.158 3.32 1.71 0.00 4.44
948 978 3.807538 GCGCCGTACGTCAGAGGA 61.808 66.667 15.21 0.00 46.11 3.71
949 979 2.403987 CGCCGTACGTCAGAGGAG 59.596 66.667 15.21 0.00 36.87 3.69
950 980 2.102553 GCCGTACGTCAGAGGAGC 59.897 66.667 15.21 3.74 0.00 4.70
951 981 2.408241 GCCGTACGTCAGAGGAGCT 61.408 63.158 15.21 0.00 0.00 4.09
952 982 1.935327 GCCGTACGTCAGAGGAGCTT 61.935 60.000 15.21 0.00 0.00 3.74
953 983 0.099082 CCGTACGTCAGAGGAGCTTC 59.901 60.000 15.21 0.00 0.00 3.86
1132 1180 1.268283 CCGCTTCTTCTTCCTCCCCT 61.268 60.000 0.00 0.00 0.00 4.79
1249 1297 1.466360 CGCATTCGCCTTTCTTTCCAG 60.466 52.381 0.00 0.00 33.11 3.86
1257 1305 1.071605 CTTTCTTTCCAGGACGCTCG 58.928 55.000 0.00 0.00 0.00 5.03
1356 1404 1.661112 GTCGAATCCTTTGCGAGAAGG 59.339 52.381 10.13 10.13 46.17 3.46
1423 1477 2.044946 GCCTGCCTTGGATTCGGT 60.045 61.111 0.00 0.00 0.00 4.69
1466 1520 1.148310 CTATTACGCTTCGGGGCATG 58.852 55.000 0.00 0.00 0.00 4.06
1467 1521 0.753867 TATTACGCTTCGGGGCATGA 59.246 50.000 0.00 0.00 0.00 3.07
1468 1522 0.107410 ATTACGCTTCGGGGCATGAA 60.107 50.000 0.00 0.00 0.00 2.57
1469 1523 0.321741 TTACGCTTCGGGGCATGAAA 60.322 50.000 0.00 0.00 0.00 2.69
1470 1524 0.107410 TACGCTTCGGGGCATGAAAT 60.107 50.000 0.00 0.00 0.00 2.17
1518 1572 0.883370 GGAAGGTTGACGGTGTGACC 60.883 60.000 0.00 0.00 34.05 4.02
1592 1653 3.610040 ATGCGTGTGATTTGAGGTAGA 57.390 42.857 0.00 0.00 0.00 2.59
1618 1683 6.519043 GCCTGAGAACATGTAATAGCCTATGA 60.519 42.308 0.00 0.00 0.00 2.15
1642 1707 2.435741 CCGAATCGGCGAATCTAGC 58.564 57.895 21.30 4.07 41.17 3.42
1678 1772 5.902681 TCTTTTCGCTATTTCTGCTAGCTA 58.097 37.500 17.23 0.72 39.55 3.32
1767 1898 1.456705 TGGGGTGGTCTTTTGGCAC 60.457 57.895 0.00 0.00 0.00 5.01
1778 1909 2.028112 TCTTTTGGCACGCTGATCTAGT 60.028 45.455 0.00 0.00 0.00 2.57
2055 2186 8.186821 GCTCTGCATGTTTTAGATTTCTGTTAT 58.813 33.333 0.00 0.00 0.00 1.89
2090 2221 7.592533 TGTAATTGTTCTGTAGTCACTTACGAC 59.407 37.037 0.00 0.00 33.24 4.34
2096 2227 5.001874 TCTGTAGTCACTTACGACTCACAT 58.998 41.667 0.00 0.00 42.70 3.21
2098 2229 6.652062 TCTGTAGTCACTTACGACTCACATTA 59.348 38.462 0.00 0.00 42.70 1.90
2101 2232 6.080648 AGTCACTTACGACTCACATTAACA 57.919 37.500 0.00 0.00 42.70 2.41
2151 2290 4.586001 AGATTTGTTGGAGCAATCTTGTGT 59.414 37.500 0.00 0.00 0.00 3.72
2165 2304 6.267817 CAATCTTGTGTGTTCAGTTGACAAT 58.732 36.000 0.00 0.00 0.00 2.71
2169 2308 6.765512 TCTTGTGTGTTCAGTTGACAATATCA 59.234 34.615 0.00 0.00 34.65 2.15
2217 2356 9.877178 AGTTATGTTTCTAGTATTTCTGACCTG 57.123 33.333 0.00 0.00 0.00 4.00
2336 2475 5.864628 TTATGTTGCTACGTATTTGTGCA 57.135 34.783 0.00 0.00 0.00 4.57
2356 2495 3.211865 CATATGACCTGCTTGCTGATGT 58.788 45.455 0.00 0.00 0.00 3.06
2598 2767 4.949856 GGTATCACTCATTGTGTCCCAAAT 59.050 41.667 0.00 0.00 46.27 2.32
2602 2771 6.232581 TCACTCATTGTGTCCCAAATTTTT 57.767 33.333 0.00 0.00 46.27 1.94
2626 2795 6.859112 TCTAGGAGTGCTTTTAGATGTCTT 57.141 37.500 0.00 0.00 0.00 3.01
2627 2796 6.634805 TCTAGGAGTGCTTTTAGATGTCTTG 58.365 40.000 0.00 0.00 0.00 3.02
2628 2797 5.234466 AGGAGTGCTTTTAGATGTCTTGT 57.766 39.130 0.00 0.00 0.00 3.16
2629 2798 5.241662 AGGAGTGCTTTTAGATGTCTTGTC 58.758 41.667 0.00 0.00 0.00 3.18
2630 2799 4.393371 GGAGTGCTTTTAGATGTCTTGTCC 59.607 45.833 0.00 0.00 0.00 4.02
2685 2857 9.378551 GACAATGAGTGATACCATTAGTAACAA 57.621 33.333 0.00 0.00 35.71 2.83
2766 2939 8.349983 GGGTTTAAAATATCGCACATCTAATGT 58.650 33.333 0.00 0.00 46.22 2.71
2787 2960 4.517453 TGTAGGTCACCTGCAAATTGTAAC 59.483 41.667 13.00 0.00 42.91 2.50
2861 3034 8.682710 ACTTTGCTGTTCTTTTTACTTACATGA 58.317 29.630 0.00 0.00 0.00 3.07
2885 3058 9.311676 TGATCATCTCTTATAGCTTCTCAGAAT 57.688 33.333 0.00 0.00 0.00 2.40
2962 3135 9.474313 TTTTGATGGCTAGTATTTTCCTTGTAT 57.526 29.630 0.00 0.00 0.00 2.29
2993 3166 8.662781 TTCCTATGCTCAATCTGTATGTTTAC 57.337 34.615 0.00 0.00 0.00 2.01
3013 3186 6.730960 TTACGTTTAGCTAACATTTGGGAG 57.269 37.500 5.45 0.00 36.50 4.30
3020 3193 5.712152 AGCTAACATTTGGGAGACTTTTG 57.288 39.130 0.00 0.00 0.00 2.44
3253 3426 7.121911 CGTATGTTTATCAGAAAGACTGCATG 58.878 38.462 0.00 0.00 45.38 4.06
3271 3444 0.034186 TGCCCATACTGCCCTTTCAG 60.034 55.000 0.00 0.00 39.86 3.02
3382 3560 8.023128 ACAATAACATGATAAGAAAGTGTGTGC 58.977 33.333 0.00 0.00 0.00 4.57
3383 3561 4.668576 ACATGATAAGAAAGTGTGTGCG 57.331 40.909 0.00 0.00 0.00 5.34
3384 3562 3.436704 ACATGATAAGAAAGTGTGTGCGG 59.563 43.478 0.00 0.00 0.00 5.69
3407 3585 7.182761 CGGTCTATTTCTGTTTTGAGCTTATG 58.817 38.462 0.00 0.00 0.00 1.90
3432 3610 7.147863 TGCATGCTAACAATTCAATATCCACTT 60.148 33.333 20.33 0.00 0.00 3.16
3596 3774 6.603237 TTAATCATATGCTCAACTGTTCGG 57.397 37.500 0.00 0.00 0.00 4.30
3718 3896 3.436704 TGCAGCTGTTGTACTAAATCTGC 59.563 43.478 16.64 14.10 44.07 4.26
3719 3897 3.436704 GCAGCTGTTGTACTAAATCTGCA 59.563 43.478 16.64 0.00 43.49 4.41
3869 4047 1.608590 AGTTTCACGTTGCTCCATTGG 59.391 47.619 0.00 0.00 0.00 3.16
3924 4102 3.799281 AGAACCACCACACACAATTTG 57.201 42.857 0.00 0.00 0.00 2.32
3987 4165 3.563808 TCTTGTGTGTTGGTTCATGCTAC 59.436 43.478 0.00 0.00 0.00 3.58
4028 4206 7.553334 ACATTCTTACGATGTTACCACATACT 58.447 34.615 0.00 0.00 44.22 2.12
4029 4207 7.705325 ACATTCTTACGATGTTACCACATACTC 59.295 37.037 0.00 0.00 44.22 2.59
4030 4208 6.140303 TCTTACGATGTTACCACATACTCC 57.860 41.667 0.00 0.00 44.22 3.85
4031 4209 3.814005 ACGATGTTACCACATACTCCC 57.186 47.619 0.00 0.00 44.22 4.30
4032 4210 3.371965 ACGATGTTACCACATACTCCCT 58.628 45.455 0.00 0.00 44.22 4.20
4033 4211 3.383825 ACGATGTTACCACATACTCCCTC 59.616 47.826 0.00 0.00 44.22 4.30
4034 4212 3.243771 CGATGTTACCACATACTCCCTCC 60.244 52.174 0.00 0.00 44.22 4.30
4035 4213 2.104967 TGTTACCACATACTCCCTCCG 58.895 52.381 0.00 0.00 0.00 4.63
4036 4214 2.105766 GTTACCACATACTCCCTCCGT 58.894 52.381 0.00 0.00 0.00 4.69
4037 4215 2.062971 TACCACATACTCCCTCCGTC 57.937 55.000 0.00 0.00 0.00 4.79
4038 4216 0.686769 ACCACATACTCCCTCCGTCC 60.687 60.000 0.00 0.00 0.00 4.79
4039 4217 1.400530 CCACATACTCCCTCCGTCCC 61.401 65.000 0.00 0.00 0.00 4.46
4040 4218 0.686441 CACATACTCCCTCCGTCCCA 60.686 60.000 0.00 0.00 0.00 4.37
4041 4219 0.042131 ACATACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
4042 4220 1.200519 CATACTCCCTCCGTCCCAAA 58.799 55.000 0.00 0.00 0.00 3.28
4043 4221 1.557832 CATACTCCCTCCGTCCCAAAA 59.442 52.381 0.00 0.00 0.00 2.44
4044 4222 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
4045 4223 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4046 4224 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
4047 4225 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
4048 4226 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
4049 4227 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
4050 4228 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
4051 4229 3.371595 CCCTCCGTCCCAAAATAAGTGAT 60.372 47.826 0.00 0.00 0.00 3.06
4052 4230 4.270008 CCTCCGTCCCAAAATAAGTGATT 58.730 43.478 0.00 0.00 0.00 2.57
4053 4231 4.335594 CCTCCGTCCCAAAATAAGTGATTC 59.664 45.833 0.00 0.00 0.00 2.52
4054 4232 4.912586 TCCGTCCCAAAATAAGTGATTCA 58.087 39.130 0.00 0.00 0.00 2.57
4055 4233 5.317808 TCCGTCCCAAAATAAGTGATTCAA 58.682 37.500 0.00 0.00 0.00 2.69
4056 4234 5.182380 TCCGTCCCAAAATAAGTGATTCAAC 59.818 40.000 0.00 0.00 0.00 3.18
4057 4235 5.183140 CCGTCCCAAAATAAGTGATTCAACT 59.817 40.000 0.00 0.00 0.00 3.16
4058 4236 6.294508 CCGTCCCAAAATAAGTGATTCAACTT 60.295 38.462 0.00 0.00 42.89 2.66
4059 4237 7.145323 CGTCCCAAAATAAGTGATTCAACTTT 58.855 34.615 6.76 0.00 40.77 2.66
4060 4238 8.293867 CGTCCCAAAATAAGTGATTCAACTTTA 58.706 33.333 6.76 0.03 40.77 1.85
4085 4263 6.572167 ACTAGCTTTAGTACAAAGTCGAGT 57.428 37.500 14.90 14.40 0.00 4.18
4086 4264 6.610456 ACTAGCTTTAGTACAAAGTCGAGTC 58.390 40.000 14.90 0.00 0.00 3.36
4087 4265 5.449107 AGCTTTAGTACAAAGTCGAGTCA 57.551 39.130 14.90 0.00 0.00 3.41
4088 4266 5.221130 AGCTTTAGTACAAAGTCGAGTCAC 58.779 41.667 14.90 0.00 0.00 3.67
4089 4267 5.009811 AGCTTTAGTACAAAGTCGAGTCACT 59.990 40.000 14.90 0.00 0.00 3.41
4090 4268 5.690857 GCTTTAGTACAAAGTCGAGTCACTT 59.309 40.000 14.90 3.11 38.30 3.16
4091 4269 6.860023 GCTTTAGTACAAAGTCGAGTCACTTA 59.140 38.462 14.90 0.00 35.45 2.24
4092 4270 7.541437 GCTTTAGTACAAAGTCGAGTCACTTAT 59.459 37.037 14.90 4.10 35.45 1.73
4093 4271 9.408069 CTTTAGTACAAAGTCGAGTCACTTATT 57.592 33.333 0.00 2.93 35.45 1.40
4094 4272 9.754382 TTTAGTACAAAGTCGAGTCACTTATTT 57.246 29.630 0.00 1.15 35.45 1.40
4095 4273 9.754382 TTAGTACAAAGTCGAGTCACTTATTTT 57.246 29.630 0.00 0.00 35.45 1.82
4096 4274 8.073355 AGTACAAAGTCGAGTCACTTATTTTG 57.927 34.615 0.00 7.24 35.45 2.44
4097 4275 6.300354 ACAAAGTCGAGTCACTTATTTTGG 57.700 37.500 11.39 0.00 35.45 3.28
4098 4276 5.238650 ACAAAGTCGAGTCACTTATTTTGGG 59.761 40.000 11.39 0.00 35.45 4.12
4099 4277 4.884668 AGTCGAGTCACTTATTTTGGGA 57.115 40.909 0.00 0.00 0.00 4.37
4100 4278 4.566987 AGTCGAGTCACTTATTTTGGGAC 58.433 43.478 0.00 0.00 0.00 4.46
4101 4279 3.367025 GTCGAGTCACTTATTTTGGGACG 59.633 47.826 0.00 0.00 33.84 4.79
4102 4280 2.671396 CGAGTCACTTATTTTGGGACGG 59.329 50.000 0.00 0.00 33.84 4.79
4103 4281 3.615592 CGAGTCACTTATTTTGGGACGGA 60.616 47.826 0.00 0.00 33.84 4.69
4104 4282 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
4105 4283 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
4106 4284 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
4107 4285 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
4108 4286 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
4109 4287 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
4110 4288 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
4111 4289 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
4142 4320 7.232534 AGTCAAATTAGCTCCCTCTACTATCAG 59.767 40.741 0.00 0.00 0.00 2.90
4149 4327 4.763279 GCTCCCTCTACTATCAGGTAAGTC 59.237 50.000 0.00 0.00 0.00 3.01
4162 4340 6.406692 TCAGGTAAGTCTATATTGGACTGC 57.593 41.667 10.46 7.71 42.39 4.40
4313 4491 6.706270 AGTACATTAAAGTGTGAGGTGTCTTG 59.294 38.462 0.00 0.00 33.62 3.02
4341 4519 2.040278 TGGCTCATTGGCTTACTGACTT 59.960 45.455 0.00 0.00 42.34 3.01
4342 4520 2.421424 GGCTCATTGGCTTACTGACTTG 59.579 50.000 0.00 0.00 38.32 3.16
4350 4528 2.346803 GCTTACTGACTTGGCGAATCA 58.653 47.619 0.00 0.00 0.00 2.57
4451 4631 5.811796 TTTACAGTAGCTGGTCCAGTTTA 57.188 39.130 20.24 10.41 35.51 2.01
4609 4789 2.421424 AGCCTGATCTTTTGACATTCGC 59.579 45.455 0.00 0.00 0.00 4.70
4625 4805 0.606604 TCGCTGTCCTGTTCTAACCC 59.393 55.000 0.00 0.00 0.00 4.11
4631 4811 1.555533 GTCCTGTTCTAACCCTCCTGG 59.444 57.143 0.00 0.00 41.37 4.45
4715 4895 3.192001 AGCAACTTCAGGCAACACATATG 59.808 43.478 0.00 0.00 41.41 1.78
4758 4938 7.405292 TGATAAGAGTGAATTTTGGATGGAGT 58.595 34.615 0.00 0.00 0.00 3.85
4790 4970 6.015856 CACAAGTAATTGGTGTATGACCCAAA 60.016 38.462 7.93 0.00 45.45 3.28
4821 5001 9.336171 AGAAATAAGGATCAAAGATGCTCTAAC 57.664 33.333 1.47 0.00 0.00 2.34
4915 5095 0.758734 AGCAGTAGTGGCACAGTCAA 59.241 50.000 21.41 0.00 43.36 3.18
5010 5190 8.747666 GTGCACTTCAAACGTTTTTATGAATAA 58.252 29.630 11.66 0.00 31.92 1.40
5011 5191 9.469807 TGCACTTCAAACGTTTTTATGAATAAT 57.530 25.926 11.66 0.00 31.92 1.28
5075 5255 2.686405 TCATGTCAATGCTGCCAATCTC 59.314 45.455 0.00 0.00 33.47 2.75
5205 5385 1.073763 TGGGGTCAAGGTCACATGAAG 59.926 52.381 0.00 0.00 0.00 3.02
5269 5449 6.440436 TGTTATTTTGGTTTTCCTCTTACGC 58.560 36.000 0.00 0.00 41.38 4.42
5305 5486 1.186200 ACGCTGATTGCTCTCCTGTA 58.814 50.000 0.00 0.00 40.11 2.74
5825 6007 3.934391 AAGTACCAGGCGACGCTGC 62.934 63.158 20.77 3.61 0.00 5.25
5854 6036 5.401531 TCAAACATATATACTCCCTCCGC 57.598 43.478 0.00 0.00 0.00 5.54
5858 6040 0.033796 TATATACTCCCTCCGCCCCG 60.034 60.000 0.00 0.00 0.00 5.73
5906 6088 2.043248 TGGGACGGAGGGAGTAGC 60.043 66.667 0.00 0.00 0.00 3.58
5943 6125 6.177310 TCAGTAGTAAGTGGGTTTTAGCAA 57.823 37.500 0.00 0.00 0.00 3.91
5956 6138 5.010213 GGGTTTTAGCAAGGTGTCATGTTAA 59.990 40.000 0.00 0.00 0.00 2.01
6074 6261 1.160870 TGGCCTTTGAGGGAGGAGA 59.839 57.895 3.32 0.00 36.33 3.71
6090 6277 6.215636 AGGGAGGAGATAAGTTTTGCTTTCTA 59.784 38.462 0.00 0.00 38.57 2.10
6130 6317 0.035630 CTCTCACCCTCCCTTGCTTG 60.036 60.000 0.00 0.00 0.00 4.01
6198 6385 9.588096 AGATTTTCTTTTCCTTACCTGTACATT 57.412 29.630 0.00 0.00 0.00 2.71
6309 6496 4.910195 TCCAGACAATCTACTGCAATGTT 58.090 39.130 0.00 0.00 33.40 2.71
6310 6497 4.696877 TCCAGACAATCTACTGCAATGTTG 59.303 41.667 0.00 0.00 33.40 3.33
6311 6498 4.456911 CCAGACAATCTACTGCAATGTTGT 59.543 41.667 0.00 0.00 33.40 3.32
6312 6499 5.643348 CCAGACAATCTACTGCAATGTTGTA 59.357 40.000 0.00 0.00 33.40 2.41
6364 6552 2.876079 GCTGCCAGCCAACCCTATATAC 60.876 54.545 5.06 0.00 34.48 1.47
6491 6765 3.933900 TTCGTCGTCGCGTACTGGC 62.934 63.158 5.77 1.11 36.96 4.85
6593 6867 2.035321 GGTAGCCGATCAGGAAGAAGAG 59.965 54.545 7.64 0.00 45.00 2.85
6596 6870 2.032620 GCCGATCAGGAAGAAGAGGTA 58.967 52.381 7.64 0.00 45.00 3.08
6597 6871 2.431057 GCCGATCAGGAAGAAGAGGTAA 59.569 50.000 7.64 0.00 45.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 73 4.113815 CGGGCTCCCCTTCATGCA 62.114 66.667 0.00 0.00 42.67 3.96
61 77 3.003173 CTCACGGGCTCCCCTTCA 61.003 66.667 0.00 0.00 42.67 3.02
64 80 3.322466 CAACTCACGGGCTCCCCT 61.322 66.667 0.00 0.00 42.67 4.79
75 91 0.319555 GCAGTACGTCTGGCAACTCA 60.320 55.000 14.19 0.00 43.78 3.41
84 100 1.292223 ACGCCATTGCAGTACGTCT 59.708 52.632 0.00 0.00 37.32 4.18
122 138 3.833645 CCCGTCCTCGCCATCGAA 61.834 66.667 0.00 0.00 44.98 3.71
123 139 4.807631 TCCCGTCCTCGCCATCGA 62.808 66.667 0.00 0.00 43.28 3.59
126 142 2.835431 CTCTCCCGTCCTCGCCAT 60.835 66.667 0.00 0.00 35.54 4.40
127 143 3.997400 CTCTCTCCCGTCCTCGCCA 62.997 68.421 0.00 0.00 35.54 5.69
208 224 1.448922 GGCATCCGTCTCGTAGCTCT 61.449 60.000 0.00 0.00 0.00 4.09
233 249 4.837860 TGCTCTCTCCTCTCTTCTTTCTTT 59.162 41.667 0.00 0.00 0.00 2.52
237 253 5.490159 CATTTGCTCTCTCCTCTCTTCTTT 58.510 41.667 0.00 0.00 0.00 2.52
279 295 5.105228 CCACCTCAAATTGCACCAAATCTAT 60.105 40.000 0.00 0.00 0.00 1.98
280 296 4.220382 CCACCTCAAATTGCACCAAATCTA 59.780 41.667 0.00 0.00 0.00 1.98
281 297 3.007182 CCACCTCAAATTGCACCAAATCT 59.993 43.478 0.00 0.00 0.00 2.40
340 358 0.252696 TAGGATGGATATGGGCCGCT 60.253 55.000 0.00 0.00 0.00 5.52
358 376 6.377429 CACTCCTCGTATCCAGCCTAAATATA 59.623 42.308 0.00 0.00 0.00 0.86
365 383 1.395826 GCACTCCTCGTATCCAGCCT 61.396 60.000 0.00 0.00 0.00 4.58
524 554 3.576550 ACAGGTTGGTTCACACAAGTTTT 59.423 39.130 0.00 0.00 0.00 2.43
525 555 3.161866 ACAGGTTGGTTCACACAAGTTT 58.838 40.909 0.00 0.00 0.00 2.66
526 556 2.802719 ACAGGTTGGTTCACACAAGTT 58.197 42.857 0.00 0.00 0.00 2.66
527 557 2.507407 ACAGGTTGGTTCACACAAGT 57.493 45.000 0.00 0.00 0.00 3.16
528 558 3.541632 ACTACAGGTTGGTTCACACAAG 58.458 45.455 0.00 0.00 0.00 3.16
529 559 3.637911 ACTACAGGTTGGTTCACACAA 57.362 42.857 0.00 0.00 0.00 3.33
530 560 3.637911 AACTACAGGTTGGTTCACACA 57.362 42.857 0.00 0.00 36.70 3.72
531 561 4.952460 TCTAACTACAGGTTGGTTCACAC 58.048 43.478 0.00 0.00 38.75 3.82
532 562 5.305902 TCATCTAACTACAGGTTGGTTCACA 59.694 40.000 0.00 0.00 38.75 3.58
533 563 5.790593 TCATCTAACTACAGGTTGGTTCAC 58.209 41.667 0.00 0.00 38.75 3.18
534 564 6.620877 ATCATCTAACTACAGGTTGGTTCA 57.379 37.500 0.00 0.00 38.75 3.18
535 565 8.475639 TCTAATCATCTAACTACAGGTTGGTTC 58.524 37.037 0.00 0.00 38.75 3.62
536 566 8.375493 TCTAATCATCTAACTACAGGTTGGTT 57.625 34.615 0.00 0.00 38.75 3.67
537 567 7.839705 TCTCTAATCATCTAACTACAGGTTGGT 59.160 37.037 0.00 0.00 38.75 3.67
538 568 8.239038 TCTCTAATCATCTAACTACAGGTTGG 57.761 38.462 0.00 0.00 38.75 3.77
539 569 9.126151 TCTCTCTAATCATCTAACTACAGGTTG 57.874 37.037 0.00 0.00 38.75 3.77
540 570 9.127277 GTCTCTCTAATCATCTAACTACAGGTT 57.873 37.037 0.00 0.00 41.54 3.50
541 571 8.275758 TGTCTCTCTAATCATCTAACTACAGGT 58.724 37.037 0.00 0.00 0.00 4.00
542 572 8.684386 TGTCTCTCTAATCATCTAACTACAGG 57.316 38.462 0.00 0.00 0.00 4.00
543 573 9.337396 ACTGTCTCTCTAATCATCTAACTACAG 57.663 37.037 0.00 0.00 35.43 2.74
544 574 9.114952 CACTGTCTCTCTAATCATCTAACTACA 57.885 37.037 0.00 0.00 0.00 2.74
545 575 9.332502 TCACTGTCTCTCTAATCATCTAACTAC 57.667 37.037 0.00 0.00 0.00 2.73
547 577 8.995027 ATCACTGTCTCTCTAATCATCTAACT 57.005 34.615 0.00 0.00 0.00 2.24
550 580 9.679661 GGATATCACTGTCTCTCTAATCATCTA 57.320 37.037 4.83 0.00 0.00 1.98
551 581 8.169393 TGGATATCACTGTCTCTCTAATCATCT 58.831 37.037 4.83 0.00 0.00 2.90
552 582 8.243426 GTGGATATCACTGTCTCTCTAATCATC 58.757 40.741 4.83 0.00 42.86 2.92
553 583 7.727634 TGTGGATATCACTGTCTCTCTAATCAT 59.272 37.037 4.83 0.00 46.20 2.45
554 584 7.062957 TGTGGATATCACTGTCTCTCTAATCA 58.937 38.462 4.83 0.00 46.20 2.57
555 585 7.517614 TGTGGATATCACTGTCTCTCTAATC 57.482 40.000 4.83 0.00 46.20 1.75
556 586 6.015519 GCTGTGGATATCACTGTCTCTCTAAT 60.016 42.308 4.83 0.00 46.20 1.73
557 587 5.300539 GCTGTGGATATCACTGTCTCTCTAA 59.699 44.000 4.83 0.00 46.20 2.10
558 588 4.824537 GCTGTGGATATCACTGTCTCTCTA 59.175 45.833 4.83 0.00 46.20 2.43
559 589 3.636300 GCTGTGGATATCACTGTCTCTCT 59.364 47.826 4.83 0.00 46.20 3.10
560 590 3.243704 GGCTGTGGATATCACTGTCTCTC 60.244 52.174 4.83 0.00 46.20 3.20
561 591 2.697751 GGCTGTGGATATCACTGTCTCT 59.302 50.000 4.83 0.00 46.20 3.10
562 592 2.224161 GGGCTGTGGATATCACTGTCTC 60.224 54.545 4.83 0.00 45.42 3.36
563 593 1.765314 GGGCTGTGGATATCACTGTCT 59.235 52.381 4.83 0.00 45.42 3.41
564 594 1.486310 TGGGCTGTGGATATCACTGTC 59.514 52.381 4.83 6.64 46.20 3.51
565 595 1.210478 GTGGGCTGTGGATATCACTGT 59.790 52.381 4.83 0.00 46.20 3.55
566 596 1.475751 GGTGGGCTGTGGATATCACTG 60.476 57.143 4.83 6.46 46.20 3.66
567 597 0.839946 GGTGGGCTGTGGATATCACT 59.160 55.000 4.83 0.00 46.20 3.41
568 598 0.546122 TGGTGGGCTGTGGATATCAC 59.454 55.000 4.83 2.02 46.23 3.06
569 599 0.839277 CTGGTGGGCTGTGGATATCA 59.161 55.000 4.83 0.00 0.00 2.15
570 600 0.109342 CCTGGTGGGCTGTGGATATC 59.891 60.000 0.00 0.00 0.00 1.63
571 601 0.624500 ACCTGGTGGGCTGTGGATAT 60.625 55.000 0.00 0.00 39.10 1.63
572 602 0.844661 AACCTGGTGGGCTGTGGATA 60.845 55.000 0.00 0.00 39.10 2.59
573 603 1.729267 AAACCTGGTGGGCTGTGGAT 61.729 55.000 0.00 0.00 39.10 3.41
574 604 2.351924 GAAACCTGGTGGGCTGTGGA 62.352 60.000 0.00 0.00 39.10 4.02
575 605 1.903404 GAAACCTGGTGGGCTGTGG 60.903 63.158 0.00 0.00 39.10 4.17
576 606 0.754957 TTGAAACCTGGTGGGCTGTG 60.755 55.000 0.00 0.00 39.10 3.66
577 607 0.468029 CTTGAAACCTGGTGGGCTGT 60.468 55.000 0.00 0.00 39.10 4.40
578 608 0.468029 ACTTGAAACCTGGTGGGCTG 60.468 55.000 0.00 0.00 39.10 4.85
579 609 0.178990 GACTTGAAACCTGGTGGGCT 60.179 55.000 0.00 0.00 39.10 5.19
580 610 1.179174 GGACTTGAAACCTGGTGGGC 61.179 60.000 0.00 0.00 39.10 5.36
581 611 0.478507 AGGACTTGAAACCTGGTGGG 59.521 55.000 0.00 0.00 41.89 4.61
582 612 1.609208 CAGGACTTGAAACCTGGTGG 58.391 55.000 0.00 0.00 46.76 4.61
587 617 5.070685 GTCATTTACCAGGACTTGAAACCT 58.929 41.667 0.00 0.00 36.92 3.50
588 618 4.825085 TGTCATTTACCAGGACTTGAAACC 59.175 41.667 0.00 0.00 32.84 3.27
589 619 6.381801 CATGTCATTTACCAGGACTTGAAAC 58.618 40.000 0.00 0.00 38.34 2.78
590 620 5.048083 GCATGTCATTTACCAGGACTTGAAA 60.048 40.000 10.02 0.00 38.34 2.69
591 621 4.458989 GCATGTCATTTACCAGGACTTGAA 59.541 41.667 10.02 0.00 38.34 2.69
592 622 4.009675 GCATGTCATTTACCAGGACTTGA 58.990 43.478 10.02 0.00 38.34 3.02
593 623 3.129287 GGCATGTCATTTACCAGGACTTG 59.871 47.826 0.00 0.00 38.80 3.16
594 624 3.356290 GGCATGTCATTTACCAGGACTT 58.644 45.455 0.00 0.00 32.84 3.01
595 625 2.680805 CGGCATGTCATTTACCAGGACT 60.681 50.000 0.00 0.00 32.84 3.85
596 626 1.670811 CGGCATGTCATTTACCAGGAC 59.329 52.381 0.00 0.00 0.00 3.85
597 627 1.408127 CCGGCATGTCATTTACCAGGA 60.408 52.381 0.00 0.00 0.00 3.86
598 628 1.024271 CCGGCATGTCATTTACCAGG 58.976 55.000 0.00 0.00 0.00 4.45
599 629 2.036958 TCCGGCATGTCATTTACCAG 57.963 50.000 0.00 0.00 0.00 4.00
600 630 2.092699 TGATCCGGCATGTCATTTACCA 60.093 45.455 0.00 0.00 0.00 3.25
601 631 2.549754 CTGATCCGGCATGTCATTTACC 59.450 50.000 0.00 0.00 0.00 2.85
602 632 3.206150 ACTGATCCGGCATGTCATTTAC 58.794 45.455 0.00 0.00 0.00 2.01
603 633 3.134623 AGACTGATCCGGCATGTCATTTA 59.865 43.478 15.31 0.00 0.00 1.40
604 634 2.092753 AGACTGATCCGGCATGTCATTT 60.093 45.455 15.31 1.68 0.00 2.32
605 635 1.487976 AGACTGATCCGGCATGTCATT 59.512 47.619 15.31 4.67 0.00 2.57
606 636 1.069823 GAGACTGATCCGGCATGTCAT 59.930 52.381 15.31 0.00 0.00 3.06
607 637 0.461548 GAGACTGATCCGGCATGTCA 59.538 55.000 15.31 8.35 0.00 3.58
608 638 0.749649 AGAGACTGATCCGGCATGTC 59.250 55.000 0.00 2.43 0.00 3.06
609 639 0.749649 GAGAGACTGATCCGGCATGT 59.250 55.000 0.00 0.00 0.00 3.21
610 640 0.318529 CGAGAGACTGATCCGGCATG 60.319 60.000 0.00 0.00 0.00 4.06
611 641 0.466372 TCGAGAGACTGATCCGGCAT 60.466 55.000 0.00 0.00 33.31 4.40
612 642 0.679960 TTCGAGAGACTGATCCGGCA 60.680 55.000 0.00 0.00 41.84 5.69
613 643 0.030101 CTTCGAGAGACTGATCCGGC 59.970 60.000 0.00 0.00 41.84 6.13
614 644 0.665835 CCTTCGAGAGACTGATCCGG 59.334 60.000 0.00 0.00 41.84 5.14
615 645 1.064803 CACCTTCGAGAGACTGATCCG 59.935 57.143 0.00 0.00 41.84 4.18
616 646 1.202359 GCACCTTCGAGAGACTGATCC 60.202 57.143 0.00 0.00 41.84 3.36
617 647 1.748493 AGCACCTTCGAGAGACTGATC 59.252 52.381 0.00 0.00 41.84 2.92
618 648 1.748493 GAGCACCTTCGAGAGACTGAT 59.252 52.381 0.00 0.00 41.84 2.90
619 649 1.169577 GAGCACCTTCGAGAGACTGA 58.830 55.000 0.00 0.00 41.84 3.41
620 650 0.884514 TGAGCACCTTCGAGAGACTG 59.115 55.000 0.00 0.00 41.84 3.51
621 651 1.846007 ATGAGCACCTTCGAGAGACT 58.154 50.000 0.00 0.00 41.84 3.24
622 652 3.637432 CATATGAGCACCTTCGAGAGAC 58.363 50.000 0.00 0.00 41.84 3.36
623 653 2.035193 GCATATGAGCACCTTCGAGAGA 59.965 50.000 6.97 0.00 39.20 3.10
624 654 2.402305 GCATATGAGCACCTTCGAGAG 58.598 52.381 6.97 0.00 0.00 3.20
625 655 1.269257 CGCATATGAGCACCTTCGAGA 60.269 52.381 6.97 0.00 0.00 4.04
626 656 1.135046 CGCATATGAGCACCTTCGAG 58.865 55.000 6.97 0.00 0.00 4.04
627 657 0.459899 ACGCATATGAGCACCTTCGA 59.540 50.000 6.97 0.00 0.00 3.71
628 658 1.258982 GAACGCATATGAGCACCTTCG 59.741 52.381 6.97 0.02 0.00 3.79
629 659 2.279741 TGAACGCATATGAGCACCTTC 58.720 47.619 6.97 3.89 0.00 3.46
630 660 2.401583 TGAACGCATATGAGCACCTT 57.598 45.000 6.97 0.00 0.00 3.50
631 661 2.627515 ATGAACGCATATGAGCACCT 57.372 45.000 6.97 0.00 31.57 4.00
639 669 4.202357 ACACTCACCCATATGAACGCATAT 60.202 41.667 3.65 0.00 46.12 1.78
640 670 3.133901 ACACTCACCCATATGAACGCATA 59.866 43.478 3.65 0.00 41.00 3.14
641 671 2.092968 ACACTCACCCATATGAACGCAT 60.093 45.455 3.65 0.00 38.54 4.73
642 672 1.277842 ACACTCACCCATATGAACGCA 59.722 47.619 3.65 0.00 0.00 5.24
643 673 2.024176 ACACTCACCCATATGAACGC 57.976 50.000 3.65 0.00 0.00 4.84
644 674 4.944048 TCATACACTCACCCATATGAACG 58.056 43.478 3.65 0.00 32.45 3.95
645 675 4.752101 GCTCATACACTCACCCATATGAAC 59.248 45.833 3.65 0.00 34.49 3.18
646 676 4.501400 CGCTCATACACTCACCCATATGAA 60.501 45.833 3.65 0.00 34.49 2.57
647 677 3.005791 CGCTCATACACTCACCCATATGA 59.994 47.826 3.65 0.00 33.93 2.15
648 678 3.243873 ACGCTCATACACTCACCCATATG 60.244 47.826 0.00 0.00 0.00 1.78
649 679 2.965831 ACGCTCATACACTCACCCATAT 59.034 45.455 0.00 0.00 0.00 1.78
650 680 2.384828 ACGCTCATACACTCACCCATA 58.615 47.619 0.00 0.00 0.00 2.74
651 681 1.195115 ACGCTCATACACTCACCCAT 58.805 50.000 0.00 0.00 0.00 4.00
652 682 1.842052 TACGCTCATACACTCACCCA 58.158 50.000 0.00 0.00 0.00 4.51
653 683 2.165845 ACTTACGCTCATACACTCACCC 59.834 50.000 0.00 0.00 0.00 4.61
654 684 3.505464 ACTTACGCTCATACACTCACC 57.495 47.619 0.00 0.00 0.00 4.02
655 685 5.817988 TCATACTTACGCTCATACACTCAC 58.182 41.667 0.00 0.00 0.00 3.51
656 686 5.505819 GCTCATACTTACGCTCATACACTCA 60.506 44.000 0.00 0.00 0.00 3.41
657 687 4.912766 GCTCATACTTACGCTCATACACTC 59.087 45.833 0.00 0.00 0.00 3.51
658 688 4.554919 CGCTCATACTTACGCTCATACACT 60.555 45.833 0.00 0.00 0.00 3.55
659 689 3.664486 CGCTCATACTTACGCTCATACAC 59.336 47.826 0.00 0.00 0.00 2.90
660 690 3.885358 CGCTCATACTTACGCTCATACA 58.115 45.455 0.00 0.00 0.00 2.29
668 698 2.471743 GCCTTAAGCGCTCATACTTACG 59.528 50.000 12.06 0.00 0.00 3.18
681 711 1.457346 ACATCAGCACAGCCTTAAGC 58.543 50.000 0.00 0.00 44.25 3.09
682 712 5.627499 TTTAACATCAGCACAGCCTTAAG 57.373 39.130 0.00 0.00 0.00 1.85
683 713 6.398234 TTTTTAACATCAGCACAGCCTTAA 57.602 33.333 0.00 0.00 0.00 1.85
685 715 4.935352 TTTTTAACATCAGCACAGCCTT 57.065 36.364 0.00 0.00 0.00 4.35
706 736 7.888250 AGAGATCCACAAGTTTCTTCTTTTT 57.112 32.000 0.00 0.00 0.00 1.94
714 744 5.979517 CCAAAACAAGAGATCCACAAGTTTC 59.020 40.000 0.00 0.00 0.00 2.78
757 787 3.583086 GGGCCGTAGAATTGCGCC 61.583 66.667 4.18 0.00 32.39 6.53
828 858 2.107141 GATCCTCGTCCAAGCGGG 59.893 66.667 0.00 0.00 38.37 6.13
829 859 2.107141 GGATCCTCGTCCAAGCGG 59.893 66.667 3.84 0.00 38.20 5.52
830 860 2.107141 GGGATCCTCGTCCAAGCG 59.893 66.667 12.58 0.00 40.17 4.68
831 861 2.066999 AGGGGATCCTCGTCCAAGC 61.067 63.158 12.58 0.00 39.80 4.01
832 862 1.826024 CAGGGGATCCTCGTCCAAG 59.174 63.158 12.58 0.00 42.67 3.61
833 863 2.367202 GCAGGGGATCCTCGTCCAA 61.367 63.158 12.58 0.00 42.67 3.53
834 864 2.764128 GCAGGGGATCCTCGTCCA 60.764 66.667 12.58 0.00 42.67 4.02
835 865 3.551407 GGCAGGGGATCCTCGTCC 61.551 72.222 12.58 10.58 42.67 4.79
836 866 3.917760 CGGCAGGGGATCCTCGTC 61.918 72.222 12.58 4.80 42.67 4.20
837 867 4.779733 ACGGCAGGGGATCCTCGT 62.780 66.667 12.58 11.06 42.67 4.18
838 868 4.227134 CACGGCAGGGGATCCTCG 62.227 72.222 12.58 5.37 42.67 4.63
839 869 4.554036 GCACGGCAGGGGATCCTC 62.554 72.222 12.58 7.90 42.67 3.71
868 898 1.534175 CCTATGAGTCAGCGACGGAAC 60.534 57.143 0.00 0.00 37.67 3.62
869 899 0.738975 CCTATGAGTCAGCGACGGAA 59.261 55.000 0.00 0.00 37.67 4.30
870 900 1.725557 GCCTATGAGTCAGCGACGGA 61.726 60.000 0.00 0.00 37.67 4.69
871 901 1.299468 GCCTATGAGTCAGCGACGG 60.299 63.158 0.00 0.00 37.67 4.79
872 902 1.299468 GGCCTATGAGTCAGCGACG 60.299 63.158 0.00 0.00 37.67 5.12
873 903 1.068250 GGGCCTATGAGTCAGCGAC 59.932 63.158 0.84 1.15 0.00 5.19
874 904 2.490148 CGGGCCTATGAGTCAGCGA 61.490 63.158 0.84 0.00 0.00 4.93
875 905 2.028190 CGGGCCTATGAGTCAGCG 59.972 66.667 0.84 0.00 0.00 5.18
876 906 1.068250 GTCGGGCCTATGAGTCAGC 59.932 63.158 0.84 0.00 0.00 4.26
877 907 0.387202 CAGTCGGGCCTATGAGTCAG 59.613 60.000 0.84 0.00 0.00 3.51
878 908 0.033503 TCAGTCGGGCCTATGAGTCA 60.034 55.000 0.84 0.00 0.00 3.41
879 909 1.112113 TTCAGTCGGGCCTATGAGTC 58.888 55.000 0.84 0.00 0.00 3.36
880 910 1.568504 TTTCAGTCGGGCCTATGAGT 58.431 50.000 0.84 0.00 0.00 3.41
881 911 2.918712 ATTTCAGTCGGGCCTATGAG 57.081 50.000 0.84 0.00 0.00 2.90
882 912 3.054728 TCAAATTTCAGTCGGGCCTATGA 60.055 43.478 0.84 0.00 0.00 2.15
883 913 3.065371 GTCAAATTTCAGTCGGGCCTATG 59.935 47.826 0.84 0.00 0.00 2.23
884 914 3.279434 GTCAAATTTCAGTCGGGCCTAT 58.721 45.455 0.84 0.00 0.00 2.57
885 915 2.617021 GGTCAAATTTCAGTCGGGCCTA 60.617 50.000 0.84 0.00 0.00 3.93
886 916 1.534729 GTCAAATTTCAGTCGGGCCT 58.465 50.000 0.84 0.00 0.00 5.19
887 917 0.526211 GGTCAAATTTCAGTCGGGCC 59.474 55.000 0.00 0.00 0.00 5.80
888 918 0.526211 GGGTCAAATTTCAGTCGGGC 59.474 55.000 0.00 0.00 0.00 6.13
889 919 1.539827 GTGGGTCAAATTTCAGTCGGG 59.460 52.381 0.00 0.00 0.00 5.14
890 920 1.539827 GGTGGGTCAAATTTCAGTCGG 59.460 52.381 0.00 0.00 0.00 4.79
891 921 2.226437 CAGGTGGGTCAAATTTCAGTCG 59.774 50.000 0.00 0.00 0.00 4.18
892 922 3.222603 ACAGGTGGGTCAAATTTCAGTC 58.777 45.455 0.00 0.00 0.00 3.51
893 923 3.222603 GACAGGTGGGTCAAATTTCAGT 58.777 45.455 0.00 0.00 37.73 3.41
894 924 3.221771 TGACAGGTGGGTCAAATTTCAG 58.778 45.455 0.00 0.00 44.34 3.02
895 925 3.221771 CTGACAGGTGGGTCAAATTTCA 58.778 45.455 0.00 0.00 46.36 2.69
896 926 3.004734 CACTGACAGGTGGGTCAAATTTC 59.995 47.826 7.51 0.00 46.36 2.17
897 927 2.958355 CACTGACAGGTGGGTCAAATTT 59.042 45.455 7.51 0.00 46.36 1.82
898 928 2.586425 CACTGACAGGTGGGTCAAATT 58.414 47.619 7.51 0.00 46.36 1.82
899 929 2.276732 CACTGACAGGTGGGTCAAAT 57.723 50.000 7.51 0.00 46.36 2.32
900 930 3.798794 CACTGACAGGTGGGTCAAA 57.201 52.632 7.51 0.00 46.36 2.69
907 937 0.670546 CGTTAGGCCACTGACAGGTG 60.671 60.000 5.01 2.99 33.11 4.00
908 938 1.671742 CGTTAGGCCACTGACAGGT 59.328 57.895 5.01 0.00 33.11 4.00
909 939 1.079127 CCGTTAGGCCACTGACAGG 60.079 63.158 5.01 0.00 33.11 4.00
910 940 4.598257 CCGTTAGGCCACTGACAG 57.402 61.111 5.01 0.00 33.11 3.51
928 958 4.111016 TCTGACGTACGGCGCCTG 62.111 66.667 26.68 20.24 46.11 4.85
929 959 3.812019 CTCTGACGTACGGCGCCT 61.812 66.667 26.68 14.27 46.11 5.52
930 960 4.849329 CCTCTGACGTACGGCGCC 62.849 72.222 19.07 19.07 46.11 6.53
931 961 3.736482 CTCCTCTGACGTACGGCGC 62.736 68.421 21.06 0.00 46.11 6.53
933 963 1.935327 AAGCTCCTCTGACGTACGGC 61.935 60.000 21.06 18.72 0.00 5.68
934 964 0.099082 GAAGCTCCTCTGACGTACGG 59.901 60.000 21.06 1.50 0.00 4.02
935 965 0.099082 GGAAGCTCCTCTGACGTACG 59.901 60.000 15.01 15.01 32.53 3.67
936 966 0.456628 GGGAAGCTCCTCTGACGTAC 59.543 60.000 0.00 0.00 36.57 3.67
937 967 0.683504 GGGGAAGCTCCTCTGACGTA 60.684 60.000 0.00 0.00 33.02 3.57
938 968 1.985116 GGGGAAGCTCCTCTGACGT 60.985 63.158 0.00 0.00 33.02 4.34
939 969 2.896443 GGGGAAGCTCCTCTGACG 59.104 66.667 0.00 0.00 33.02 4.35
940 970 2.896443 CGGGGAAGCTCCTCTGAC 59.104 66.667 0.00 0.00 33.85 3.51
941 971 3.077556 GCGGGGAAGCTCCTCTGA 61.078 66.667 0.00 0.00 33.85 3.27
942 972 3.080121 AGCGGGGAAGCTCCTCTG 61.080 66.667 0.00 0.00 45.67 3.35
949 979 4.360405 TGGGGAAAGCGGGGAAGC 62.360 66.667 0.00 0.00 37.41 3.86
950 980 2.361230 GTGGGGAAAGCGGGGAAG 60.361 66.667 0.00 0.00 0.00 3.46
951 981 3.974293 GGTGGGGAAAGCGGGGAA 61.974 66.667 0.00 0.00 0.00 3.97
1073 1109 3.870607 TTCCTCCTCCTGCCCAGCA 62.871 63.158 0.00 0.00 36.92 4.41
1118 1154 1.093408 TGGAGAGGGGAGGAAGAAGA 58.907 55.000 0.00 0.00 0.00 2.87
1257 1305 2.064014 GAAAATGGCAAGAAGCTGCAC 58.936 47.619 1.02 0.00 44.52 4.57
1356 1404 0.329596 AGATCACCAAGAAGCCACCC 59.670 55.000 0.00 0.00 0.00 4.61
1423 1477 5.269554 AGTACCAAAATCCCAGGAAATGA 57.730 39.130 0.00 0.00 0.00 2.57
1466 1520 4.335400 ACCAAACCACCACATGAATTTC 57.665 40.909 0.00 0.00 0.00 2.17
1467 1521 4.450053 CAACCAAACCACCACATGAATTT 58.550 39.130 0.00 0.00 0.00 1.82
1468 1522 3.181456 CCAACCAAACCACCACATGAATT 60.181 43.478 0.00 0.00 0.00 2.17
1469 1523 2.368221 CCAACCAAACCACCACATGAAT 59.632 45.455 0.00 0.00 0.00 2.57
1470 1524 1.759445 CCAACCAAACCACCACATGAA 59.241 47.619 0.00 0.00 0.00 2.57
1475 1529 1.419381 AATCCCAACCAAACCACCAC 58.581 50.000 0.00 0.00 0.00 4.16
1518 1572 6.183360 CCAAATCTAAGAAGGGCAATGAGAAG 60.183 42.308 0.00 0.00 0.00 2.85
1592 1653 3.713764 AGGCTATTACATGTTCTCAGGCT 59.286 43.478 2.30 11.24 33.16 4.58
1678 1772 4.074970 CCGCTTTCATTATGCCCTCTATT 58.925 43.478 0.00 0.00 0.00 1.73
2004 2135 8.371699 GCCAGATAATATAGACAAGAGACCTTT 58.628 37.037 0.00 0.00 0.00 3.11
2055 2186 8.165239 ACTACAGAACAATTACAGCATTTGAA 57.835 30.769 0.00 0.00 0.00 2.69
2090 2221 9.630098 ATGCTGAACTAAATTTGTTAATGTGAG 57.370 29.630 0.00 0.00 0.00 3.51
2151 2290 9.628746 CAAATCAATGATATTGTCAACTGAACA 57.371 29.630 0.00 0.00 40.97 3.18
2165 2304 8.408043 AAGAACAACTGACCAAATCAATGATA 57.592 30.769 0.00 0.00 36.69 2.15
2169 2308 7.823745 ACTAAGAACAACTGACCAAATCAAT 57.176 32.000 0.00 0.00 36.69 2.57
2217 2356 8.792633 ACTGAGAACTGCAGATATCTAAGTATC 58.207 37.037 24.75 16.66 32.87 2.24
2336 2475 3.136077 AGACATCAGCAAGCAGGTCATAT 59.864 43.478 0.00 0.00 0.00 1.78
2356 2495 7.840931 TGAAGCATAATGAGAGTAAAGACAGA 58.159 34.615 0.00 0.00 0.00 3.41
2553 2722 4.873827 CCATATAACACCAAGCAACTACGT 59.126 41.667 0.00 0.00 0.00 3.57
2602 2771 6.859112 AGACATCTAAAAGCACTCCTAGAA 57.141 37.500 0.00 0.00 0.00 2.10
2630 2799 7.630242 AGAACCACATTAATTGGAGTATGTG 57.370 36.000 18.02 0.00 44.57 3.21
2766 2939 4.076394 GGTTACAATTTGCAGGTGACCTA 58.924 43.478 2.59 0.00 37.97 3.08
2836 3009 9.683069 ATCATGTAAGTAAAAAGAACAGCAAAG 57.317 29.630 0.00 0.00 0.00 2.77
2861 3034 9.537852 AGATTCTGAGAAGCTATAAGAGATGAT 57.462 33.333 11.77 0.00 0.00 2.45
2962 3135 9.276590 CATACAGATTGAGCATAGGAAAATACA 57.723 33.333 0.00 0.00 0.00 2.29
2970 3143 6.701841 ACGTAAACATACAGATTGAGCATAGG 59.298 38.462 0.00 0.00 0.00 2.57
2993 3166 4.935808 AGTCTCCCAAATGTTAGCTAAACG 59.064 41.667 7.99 0.00 41.30 3.60
3013 3186 6.615088 TCTGCTTGATGAAATAGCAAAAGTC 58.385 36.000 0.00 0.00 43.64 3.01
3020 3193 4.155644 GCCCTATCTGCTTGATGAAATAGC 59.844 45.833 3.60 0.00 36.65 2.97
3253 3426 0.034089 ACTGAAAGGGCAGTATGGGC 60.034 55.000 0.00 0.00 46.67 5.36
3271 3444 7.278461 TCTAGACAGATATTCTACAAGCCAC 57.722 40.000 0.00 0.00 0.00 5.01
3321 3495 5.007234 TGACACGGCAATAATATGTAGCAAC 59.993 40.000 0.00 0.00 0.00 4.17
3327 3501 7.561021 TTTATGTGACACGGCAATAATATGT 57.439 32.000 0.22 0.00 0.00 2.29
3380 3558 3.188460 GCTCAAAACAGAAATAGACCGCA 59.812 43.478 0.00 0.00 0.00 5.69
3381 3559 3.437049 AGCTCAAAACAGAAATAGACCGC 59.563 43.478 0.00 0.00 0.00 5.68
3382 3560 5.613358 AAGCTCAAAACAGAAATAGACCG 57.387 39.130 0.00 0.00 0.00 4.79
3383 3561 6.969473 GCATAAGCTCAAAACAGAAATAGACC 59.031 38.462 0.00 0.00 37.91 3.85
3384 3562 7.530010 TGCATAAGCTCAAAACAGAAATAGAC 58.470 34.615 0.00 0.00 42.74 2.59
3407 3585 6.742109 AGTGGATATTGAATTGTTAGCATGC 58.258 36.000 10.51 10.51 0.00 4.06
3432 3610 8.458052 CCATGCTTACACATTGTAATTTGAGTA 58.542 33.333 0.00 0.00 41.45 2.59
3490 3668 7.107542 TGTTCTTACAACCAAGACTAACAAGT 58.892 34.615 0.00 0.00 34.31 3.16
3503 3681 5.652014 TGGATCATTGGATGTTCTTACAACC 59.348 40.000 0.00 0.00 44.97 3.77
3583 3761 3.496884 TGTCATAAACCGAACAGTTGAGC 59.503 43.478 0.00 0.00 0.00 4.26
3596 3774 9.190858 TGATTTGTAAGTGCAATTGTCATAAAC 57.809 29.630 10.14 0.00 0.00 2.01
3731 3909 8.673711 GTTATTATCACAAGGTGAAATGTAGCA 58.326 33.333 2.87 0.00 45.96 3.49
3732 3910 8.129211 GGTTATTATCACAAGGTGAAATGTAGC 58.871 37.037 2.87 4.80 45.96 3.58
3869 4047 3.691609 AGCTATGCTTGCTTTAACACCTC 59.308 43.478 0.00 0.00 37.52 3.85
3987 4165 7.834007 CGTAAGAATGTAACCATCAAGTTGGTG 60.834 40.741 9.29 9.29 45.65 4.17
4028 4206 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
4029 4207 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
4030 4208 3.343941 TCACTTATTTTGGGACGGAGG 57.656 47.619 0.00 0.00 0.00 4.30
4031 4209 4.941263 TGAATCACTTATTTTGGGACGGAG 59.059 41.667 0.00 0.00 0.00 4.63
4032 4210 4.912586 TGAATCACTTATTTTGGGACGGA 58.087 39.130 0.00 0.00 0.00 4.69
4033 4211 5.183140 AGTTGAATCACTTATTTTGGGACGG 59.817 40.000 0.00 0.00 0.00 4.79
4034 4212 6.254281 AGTTGAATCACTTATTTTGGGACG 57.746 37.500 0.00 0.00 0.00 4.79
4059 4237 9.388506 ACTCGACTTTGTACTAAAGCTAGTATA 57.611 33.333 14.06 0.00 41.57 1.47
4060 4238 8.278729 ACTCGACTTTGTACTAAAGCTAGTAT 57.721 34.615 14.06 0.00 41.57 2.12
4061 4239 7.388776 TGACTCGACTTTGTACTAAAGCTAGTA 59.611 37.037 14.06 0.00 39.23 1.82
4062 4240 6.206243 TGACTCGACTTTGTACTAAAGCTAGT 59.794 38.462 14.06 13.80 41.43 2.57
4063 4241 6.523893 GTGACTCGACTTTGTACTAAAGCTAG 59.476 42.308 14.06 11.78 0.00 3.42
4064 4242 6.206243 AGTGACTCGACTTTGTACTAAAGCTA 59.794 38.462 14.06 3.93 0.00 3.32
4065 4243 5.009811 AGTGACTCGACTTTGTACTAAAGCT 59.990 40.000 14.06 0.00 0.00 3.74
4066 4244 5.221130 AGTGACTCGACTTTGTACTAAAGC 58.779 41.667 14.06 8.65 0.00 3.51
4067 4245 8.967552 ATAAGTGACTCGACTTTGTACTAAAG 57.032 34.615 13.08 13.08 37.38 1.85
4068 4246 9.754382 AAATAAGTGACTCGACTTTGTACTAAA 57.246 29.630 0.00 0.00 37.38 1.85
4069 4247 9.754382 AAAATAAGTGACTCGACTTTGTACTAA 57.246 29.630 0.00 0.00 37.38 2.24
4070 4248 9.188588 CAAAATAAGTGACTCGACTTTGTACTA 57.811 33.333 0.00 0.00 37.38 1.82
4071 4249 7.170998 CCAAAATAAGTGACTCGACTTTGTACT 59.829 37.037 0.00 0.00 37.38 2.73
4072 4250 7.288672 CCAAAATAAGTGACTCGACTTTGTAC 58.711 38.462 0.00 0.00 37.38 2.90
4073 4251 6.425721 CCCAAAATAAGTGACTCGACTTTGTA 59.574 38.462 0.00 0.00 37.38 2.41
4074 4252 5.238650 CCCAAAATAAGTGACTCGACTTTGT 59.761 40.000 0.00 0.00 37.38 2.83
4075 4253 5.468746 TCCCAAAATAAGTGACTCGACTTTG 59.531 40.000 0.00 0.00 37.38 2.77
4076 4254 5.469084 GTCCCAAAATAAGTGACTCGACTTT 59.531 40.000 0.00 0.00 37.38 2.66
4077 4255 4.995487 GTCCCAAAATAAGTGACTCGACTT 59.005 41.667 0.00 0.00 39.54 3.01
4078 4256 4.566987 GTCCCAAAATAAGTGACTCGACT 58.433 43.478 0.00 0.00 0.00 4.18
4079 4257 3.367025 CGTCCCAAAATAAGTGACTCGAC 59.633 47.826 0.00 0.00 0.00 4.20
4080 4258 3.581755 CGTCCCAAAATAAGTGACTCGA 58.418 45.455 0.00 0.00 0.00 4.04
4081 4259 2.671396 CCGTCCCAAAATAAGTGACTCG 59.329 50.000 0.00 0.00 0.00 4.18
4082 4260 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
4083 4261 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
4084 4262 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
4085 4263 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
4086 4264 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
4087 4265 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
4088 4266 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
4089 4267 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
4090 4268 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4091 4269 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
4092 4270 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
4093 4271 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
4094 4272 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
4095 4273 0.178926 TTTGTACTCCCTCCGTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
4096 4274 0.978907 TTTTGTACTCCCTCCGTCCC 59.021 55.000 0.00 0.00 0.00 4.46
4097 4275 2.038164 ACTTTTTGTACTCCCTCCGTCC 59.962 50.000 0.00 0.00 0.00 4.79
4098 4276 3.243975 TGACTTTTTGTACTCCCTCCGTC 60.244 47.826 0.00 0.00 0.00 4.79
4099 4277 2.701951 TGACTTTTTGTACTCCCTCCGT 59.298 45.455 0.00 0.00 0.00 4.69
4100 4278 3.396260 TGACTTTTTGTACTCCCTCCG 57.604 47.619 0.00 0.00 0.00 4.63
4101 4279 6.650427 AATTTGACTTTTTGTACTCCCTCC 57.350 37.500 0.00 0.00 0.00 4.30
4102 4280 7.175119 AGCTAATTTGACTTTTTGTACTCCCTC 59.825 37.037 0.00 0.00 0.00 4.30
4103 4281 7.004691 AGCTAATTTGACTTTTTGTACTCCCT 58.995 34.615 0.00 0.00 0.00 4.20
4104 4282 7.215719 AGCTAATTTGACTTTTTGTACTCCC 57.784 36.000 0.00 0.00 0.00 4.30
4105 4283 7.306213 GGAGCTAATTTGACTTTTTGTACTCC 58.694 38.462 0.00 0.00 0.00 3.85
4106 4284 7.175119 AGGGAGCTAATTTGACTTTTTGTACTC 59.825 37.037 0.00 0.00 0.00 2.59
4107 4285 7.004691 AGGGAGCTAATTTGACTTTTTGTACT 58.995 34.615 0.00 0.00 0.00 2.73
4108 4286 7.175119 AGAGGGAGCTAATTTGACTTTTTGTAC 59.825 37.037 0.00 0.00 0.00 2.90
4109 4287 7.231467 AGAGGGAGCTAATTTGACTTTTTGTA 58.769 34.615 0.00 0.00 0.00 2.41
4110 4288 6.071320 AGAGGGAGCTAATTTGACTTTTTGT 58.929 36.000 0.00 0.00 0.00 2.83
4111 4289 6.581171 AGAGGGAGCTAATTTGACTTTTTG 57.419 37.500 0.00 0.00 0.00 2.44
4142 4320 5.986135 CACTGCAGTCCAATATAGACTTACC 59.014 44.000 18.64 0.53 41.87 2.85
4149 4327 3.003068 GCTTGCACTGCAGTCCAATATAG 59.997 47.826 23.04 12.74 40.61 1.31
4162 4340 4.210331 AGGGGATTAAATAGCTTGCACTG 58.790 43.478 0.00 0.00 0.00 3.66
4200 4378 3.055167 TCAATGGGTGATGTGTACCAGAG 60.055 47.826 0.00 0.00 40.03 3.35
4247 4425 5.753438 GGATACAACAGAAGCAATCGACATA 59.247 40.000 0.00 0.00 0.00 2.29
4313 4491 1.180029 AGCCAATGAGCCATGTCAAC 58.820 50.000 0.00 0.00 0.00 3.18
4341 4519 0.958091 CAACAGGGTTTGATTCGCCA 59.042 50.000 0.00 0.00 0.00 5.69
4342 4520 0.243636 CCAACAGGGTTTGATTCGCC 59.756 55.000 0.00 0.00 0.00 5.54
4350 4528 5.279456 GCTTATGTGAAATCCAACAGGGTTT 60.279 40.000 0.00 0.00 38.11 3.27
4472 4652 8.352201 GTGCTATAGTCCAATTTGCATCATTAA 58.648 33.333 0.84 0.00 0.00 1.40
4525 4705 2.380941 TGCTGCTAGGATACCGTTACA 58.619 47.619 0.00 0.00 37.17 2.41
4582 4762 4.397420 TGTCAAAAGATCAGGCTAGCAAA 58.603 39.130 18.24 0.74 0.00 3.68
4609 4789 2.234908 CAGGAGGGTTAGAACAGGACAG 59.765 54.545 0.00 0.00 0.00 3.51
4625 4805 1.496060 TACCATAGCACCACCAGGAG 58.504 55.000 0.00 0.00 38.69 3.69
4715 4895 3.297134 TCAATGCAGTAAATCTCCCCC 57.703 47.619 0.00 0.00 0.00 5.40
4758 4938 7.880713 TCATACACCAATTACTTGTGCTTAGAA 59.119 33.333 0.00 0.00 0.00 2.10
4821 5001 7.414814 AACAAAATTACACATTAAAAGGCCG 57.585 32.000 0.00 0.00 0.00 6.13
4852 5032 7.022979 CGTGCATTCTTTCTTGTCAATGATTA 58.977 34.615 0.00 0.00 0.00 1.75
4915 5095 6.267699 CCTAAGAACATTTTTGTCTTTCCCCT 59.732 38.462 0.00 0.00 0.00 4.79
5012 5192 9.656040 GCTGAATATGATCTTTATGAGACATCT 57.344 33.333 0.00 0.00 37.17 2.90
5075 5255 2.195922 GGCACTCTGCTTTGTTGTTTG 58.804 47.619 0.00 0.00 44.28 2.93
5205 5385 4.414337 AGTTCATACCTGATGAGGAAGC 57.586 45.455 4.75 0.00 45.43 3.86
5389 5570 6.317857 CAGCTTGACTTTAATTAGTTCCAGC 58.682 40.000 7.51 7.51 0.00 4.85
5425 5606 5.726138 GCTTGCTTCTGATAAATCTGTGACG 60.726 44.000 0.00 0.00 0.00 4.35
5467 5648 6.210078 AGTTTTCAAACGAAACTGAACACAA 58.790 32.000 1.80 0.00 43.58 3.33
5505 5686 7.306213 GCAGGTTAGACTAAAATTTGGACTTC 58.694 38.462 0.00 0.00 0.00 3.01
5825 6007 5.940470 GGGAGTATATATGTTTGAGCAAGGG 59.060 44.000 0.00 0.00 0.00 3.95
5873 6055 5.104693 TCCGTCCCACAATGTAATGTAAGAT 60.105 40.000 0.00 0.00 30.84 2.40
5880 6062 1.211949 CCCTCCGTCCCACAATGTAAT 59.788 52.381 0.00 0.00 0.00 1.89
5881 6063 0.616371 CCCTCCGTCCCACAATGTAA 59.384 55.000 0.00 0.00 0.00 2.41
5882 6064 0.252330 TCCCTCCGTCCCACAATGTA 60.252 55.000 0.00 0.00 0.00 2.29
5883 6065 1.537889 TCCCTCCGTCCCACAATGT 60.538 57.895 0.00 0.00 0.00 2.71
5884 6066 1.221840 CTCCCTCCGTCCCACAATG 59.778 63.158 0.00 0.00 0.00 2.82
5888 6070 2.424733 GCTACTCCCTCCGTCCCAC 61.425 68.421 0.00 0.00 0.00 4.61
5906 6088 4.705337 ACTACTGAAACGGCTTAGAGAG 57.295 45.455 0.00 0.00 0.00 3.20
5916 6098 5.996669 AAAACCCACTTACTACTGAAACG 57.003 39.130 0.00 0.00 0.00 3.60
6001 6185 1.433121 AATTTTGGAGCCTTTGCCCA 58.567 45.000 0.00 0.00 38.69 5.36
6005 6189 6.563422 TCGATATGAAATTTTGGAGCCTTTG 58.437 36.000 0.00 0.00 0.00 2.77
6090 6277 1.181098 AGCATCCAAACAAGGCGCTT 61.181 50.000 7.64 0.00 34.67 4.68
6130 6317 5.902681 ACAGGAAAAGAACTGTAAAAAGCC 58.097 37.500 0.00 0.00 45.45 4.35
6214 6401 8.684386 ATTTGTTCCCACCGAATTTTTATTTT 57.316 26.923 0.00 0.00 31.67 1.82
6235 6422 3.089284 GACCCCCAACTGTAGGAATTTG 58.911 50.000 0.00 0.00 0.00 2.32
6266 6453 4.563976 GGATGAAGAAAAATTGTGCCATCG 59.436 41.667 0.00 0.00 32.35 3.84
6309 6496 0.195096 ACCAAGTCCCCTTCCCTACA 59.805 55.000 0.00 0.00 0.00 2.74
6310 6497 0.618981 CACCAAGTCCCCTTCCCTAC 59.381 60.000 0.00 0.00 0.00 3.18
6311 6498 1.205460 GCACCAAGTCCCCTTCCCTA 61.205 60.000 0.00 0.00 0.00 3.53
6312 6499 2.539081 GCACCAAGTCCCCTTCCCT 61.539 63.158 0.00 0.00 0.00 4.20
6391 6579 8.046107 TGATTCCAAAAATGTTTCAAAGACCTT 58.954 29.630 0.00 0.00 0.00 3.50
6393 6581 7.784633 TGATTCCAAAAATGTTTCAAAGACC 57.215 32.000 0.00 0.00 0.00 3.85
6491 6765 1.348036 ACTCCTTTCCTTTCTCCACCG 59.652 52.381 0.00 0.00 0.00 4.94
6535 6809 0.378962 CCGTGCTACTCTTCTCCTCG 59.621 60.000 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.