Multiple sequence alignment - TraesCS6A01G218500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G218500 chr6A 100.000 5575 0 0 1 5575 404452920 404458494 0.000000e+00 10296.0
1 TraesCS6A01G218500 chr6A 82.996 841 103 28 11 825 555107241 555108067 0.000000e+00 725.0
2 TraesCS6A01G218500 chr6A 75.362 345 64 20 491 822 83610384 83610048 4.500000e-31 147.0
3 TraesCS6A01G218500 chr6A 88.172 93 6 4 5261 5350 612582192 612582282 7.640000e-19 106.0
4 TraesCS6A01G218500 chr6D 96.451 2705 85 5 2163 4864 283816016 283813320 0.000000e+00 4453.0
5 TraesCS6A01G218500 chr6D 93.224 1343 58 13 841 2167 283817424 283816099 0.000000e+00 1945.0
6 TraesCS6A01G218500 chr6D 87.459 303 31 5 5256 5554 283813135 283812836 5.350000e-90 342.0
7 TraesCS6A01G218500 chr6D 87.912 91 5 2 5167 5251 283813261 283813171 9.880000e-18 102.0
8 TraesCS6A01G218500 chr6B 95.032 2375 76 8 2490 4858 444748348 444746010 0.000000e+00 3694.0
9 TraesCS6A01G218500 chr6B 94.368 1243 46 9 933 2167 444750017 444748791 0.000000e+00 1886.0
10 TraesCS6A01G218500 chr6B 95.322 342 16 0 2164 2505 444748707 444748366 1.370000e-150 544.0
11 TraesCS6A01G218500 chr6B 91.233 365 24 4 839 1197 444751540 444751178 1.800000e-134 490.0
12 TraesCS6A01G218500 chr6B 88.696 115 8 1 5256 5370 444745830 444745721 9.740000e-28 135.0
13 TraesCS6A01G218500 chr6B 91.765 85 7 0 5167 5251 444745950 444745866 9.810000e-23 119.0
14 TraesCS6A01G218500 chr1D 88.010 834 75 21 11 826 373423122 373422296 0.000000e+00 963.0
15 TraesCS6A01G218500 chr1D 86.150 852 68 22 11 826 406132458 406131621 0.000000e+00 874.0
16 TraesCS6A01G218500 chr7B 87.887 743 69 17 1 736 59624564 59625292 0.000000e+00 854.0
17 TraesCS6A01G218500 chr7B 84.552 848 87 27 3 821 498252354 498253186 0.000000e+00 800.0
18 TraesCS6A01G218500 chr7B 77.027 296 60 7 533 822 729604502 729604795 4.470000e-36 163.0
19 TraesCS6A01G218500 chr7B 75.478 314 65 10 519 822 577182305 577182616 5.820000e-30 143.0
20 TraesCS6A01G218500 chr5A 86.087 805 77 20 3 787 426750369 426749580 0.000000e+00 833.0
21 TraesCS6A01G218500 chr5D 84.160 827 111 13 11 826 424111807 424110990 0.000000e+00 784.0
22 TraesCS6A01G218500 chr5D 83.019 848 108 26 1 823 398863910 398864746 0.000000e+00 736.0
23 TraesCS6A01G218500 chr3B 83.433 833 103 24 11 823 76428595 76427778 0.000000e+00 741.0
24 TraesCS6A01G218500 chr3B 82.653 98 17 0 4761 4858 753745310 753745213 2.770000e-13 87.9
25 TraesCS6A01G218500 chr3B 84.615 91 8 6 5264 5351 477364273 477364360 9.950000e-13 86.1
26 TraesCS6A01G218500 chr7D 82.713 833 114 19 10 823 39730527 39729706 0.000000e+00 713.0
27 TraesCS6A01G218500 chr7D 82.500 840 118 16 3 825 39714493 39713666 0.000000e+00 710.0
28 TraesCS6A01G218500 chr4A 82.177 836 92 37 11 823 567193842 567194643 0.000000e+00 665.0
29 TraesCS6A01G218500 chr4A 80.702 741 103 25 59 767 704173904 704173172 1.770000e-149 540.0
30 TraesCS6A01G218500 chr4A 81.205 697 92 25 72 736 704200757 704200068 4.950000e-145 525.0
31 TraesCS6A01G218500 chr4A 80.563 710 99 24 59 736 704227650 704226948 1.390000e-140 510.0
32 TraesCS6A01G218500 chr4A 95.094 265 13 0 4900 5164 75614150 75613886 8.640000e-113 418.0
33 TraesCS6A01G218500 chr4A 94.717 265 14 0 4900 5164 423264642 423264906 4.020000e-111 412.0
34 TraesCS6A01G218500 chr2A 95.472 265 12 0 4900 5164 107159230 107158966 1.860000e-114 424.0
35 TraesCS6A01G218500 chr2A 95.472 265 12 0 4900 5164 215849264 215849528 1.860000e-114 424.0
36 TraesCS6A01G218500 chr2A 94.403 268 15 0 4901 5168 305308595 305308862 4.020000e-111 412.0
37 TraesCS6A01G218500 chr2A 94.403 268 15 0 4901 5168 438359633 438359900 4.020000e-111 412.0
38 TraesCS6A01G218500 chr2A 94.403 268 15 0 4901 5168 449574202 449573935 4.020000e-111 412.0
39 TraesCS6A01G218500 chr2A 94.074 270 16 0 4900 5169 185141675 185141406 1.450000e-110 411.0
40 TraesCS6A01G218500 chr7A 94.717 265 14 0 4900 5164 211572890 211572626 4.020000e-111 412.0
41 TraesCS6A01G218500 chr2B 77.091 275 49 14 556 822 54774558 54774290 4.500000e-31 147.0
42 TraesCS6A01G218500 chr3D 86.667 90 8 3 5264 5351 365990470 365990557 4.600000e-16 97.1
43 TraesCS6A01G218500 chr3D 83.019 106 18 0 4753 4858 565636168 565636063 4.600000e-16 97.1
44 TraesCS6A01G218500 chr3A 82.075 106 18 1 4753 4858 699855914 699855810 7.690000e-14 89.8
45 TraesCS6A01G218500 chr3A 86.667 60 7 1 4753 4812 9341891 9341949 1.300000e-06 65.8
46 TraesCS6A01G218500 chr2D 84.783 92 8 3 5264 5351 470057586 470057675 2.770000e-13 87.9
47 TraesCS6A01G218500 chr5B 100.000 28 0 0 4456 4483 652728146 652728173 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G218500 chr6A 404452920 404458494 5574 False 10296.000000 10296 100.0000 1 5575 1 chr6A.!!$F1 5574
1 TraesCS6A01G218500 chr6A 555107241 555108067 826 False 725.000000 725 82.9960 11 825 1 chr6A.!!$F2 814
2 TraesCS6A01G218500 chr6D 283812836 283817424 4588 True 1710.500000 4453 91.2615 841 5554 4 chr6D.!!$R1 4713
3 TraesCS6A01G218500 chr6B 444745721 444751540 5819 True 1144.666667 3694 92.7360 839 5370 6 chr6B.!!$R1 4531
4 TraesCS6A01G218500 chr1D 373422296 373423122 826 True 963.000000 963 88.0100 11 826 1 chr1D.!!$R1 815
5 TraesCS6A01G218500 chr1D 406131621 406132458 837 True 874.000000 874 86.1500 11 826 1 chr1D.!!$R2 815
6 TraesCS6A01G218500 chr7B 59624564 59625292 728 False 854.000000 854 87.8870 1 736 1 chr7B.!!$F1 735
7 TraesCS6A01G218500 chr7B 498252354 498253186 832 False 800.000000 800 84.5520 3 821 1 chr7B.!!$F2 818
8 TraesCS6A01G218500 chr5A 426749580 426750369 789 True 833.000000 833 86.0870 3 787 1 chr5A.!!$R1 784
9 TraesCS6A01G218500 chr5D 424110990 424111807 817 True 784.000000 784 84.1600 11 826 1 chr5D.!!$R1 815
10 TraesCS6A01G218500 chr5D 398863910 398864746 836 False 736.000000 736 83.0190 1 823 1 chr5D.!!$F1 822
11 TraesCS6A01G218500 chr3B 76427778 76428595 817 True 741.000000 741 83.4330 11 823 1 chr3B.!!$R1 812
12 TraesCS6A01G218500 chr7D 39729706 39730527 821 True 713.000000 713 82.7130 10 823 1 chr7D.!!$R2 813
13 TraesCS6A01G218500 chr7D 39713666 39714493 827 True 710.000000 710 82.5000 3 825 1 chr7D.!!$R1 822
14 TraesCS6A01G218500 chr4A 567193842 567194643 801 False 665.000000 665 82.1770 11 823 1 chr4A.!!$F2 812
15 TraesCS6A01G218500 chr4A 704173172 704173904 732 True 540.000000 540 80.7020 59 767 1 chr4A.!!$R2 708
16 TraesCS6A01G218500 chr4A 704200068 704200757 689 True 525.000000 525 81.2050 72 736 1 chr4A.!!$R3 664
17 TraesCS6A01G218500 chr4A 704226948 704227650 702 True 510.000000 510 80.5630 59 736 1 chr4A.!!$R4 677

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
830 914 0.030638 GGCAATCAAACGTGCAGTGT 59.969 50.000 0.00 0.0 42.74 3.55 F
837 921 0.511221 AAACGTGCAGTGTATCGTGC 59.489 50.000 8.90 0.0 40.29 5.34 F
853 937 0.798776 GTGCTGCTGTCATGTACACC 59.201 55.000 0.00 0.0 33.45 4.16 F
869 953 0.880441 CACCCATTGCAATGTCGTCA 59.120 50.000 31.87 0.0 34.60 4.35 F
1167 2686 1.003051 GCCCCCTCACCTTCCTCTA 59.997 63.158 0.00 0.0 0.00 2.43 F
2941 4600 0.249398 ACCGACCATTTCTTCTCCCG 59.751 55.000 0.00 0.0 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1793 3320 1.627834 ACTTCTCCTTCTTGCTCCTGG 59.372 52.381 0.00 0.0 0.0 4.45 R
1871 3398 1.880027 CTCACCAAACCACTGTAAGGC 59.120 52.381 0.00 0.0 39.3 4.35 R
2215 3841 2.554142 CCTCAAAGATCATGCACGCTA 58.446 47.619 0.00 0.0 0.0 4.26 R
2238 3864 3.516615 GAGCGACAATCTGGATATAGGC 58.483 50.000 0.00 0.0 0.0 3.93 R
3046 4708 4.095334 CGACAATTGCAGAATCTTGATGGA 59.905 41.667 5.05 0.0 0.0 3.41 R
4899 6583 0.032615 TCACAAACCAAACAGCCCCT 60.033 50.000 0.00 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.237143 ACATCCTCATGACCATCGTGTT 59.763 45.455 0.00 0.00 35.03 3.32
214 234 3.267860 GCTGCTCCAATCGCCTCG 61.268 66.667 0.00 0.00 0.00 4.63
304 326 2.939103 CAATCCGGATCTGAAACCTCAC 59.061 50.000 19.43 0.00 0.00 3.51
305 327 1.639722 TCCGGATCTGAAACCTCACA 58.360 50.000 0.00 0.00 0.00 3.58
316 338 5.596772 TCTGAAACCTCACATATGTATCGGA 59.403 40.000 18.71 12.89 0.00 4.55
365 387 0.745486 GGTGTTTACCCCGATTCCCG 60.745 60.000 0.00 0.00 41.36 5.14
375 398 2.448749 CGATTCCCGGTTCCCCTAT 58.551 57.895 0.00 0.00 33.91 2.57
404 440 3.981416 TCGAATCAATGCGATGTAGTAGC 59.019 43.478 0.00 0.00 33.40 3.58
509 557 1.656095 CGTTCTTCGATCTGCTTCACC 59.344 52.381 0.00 0.00 42.86 4.02
736 816 6.220930 AGAGTGCTTTAAAGTTCGTGTGATA 58.779 36.000 16.38 0.00 0.00 2.15
747 827 3.349488 TCGTGTGATATAGGCTGAACG 57.651 47.619 0.00 0.00 0.00 3.95
789 873 2.104792 CAGTCCAAACTCTTCTCACCCA 59.895 50.000 0.00 0.00 31.71 4.51
791 875 2.368875 GTCCAAACTCTTCTCACCCAGA 59.631 50.000 0.00 0.00 0.00 3.86
826 910 2.642129 CGGGCAATCAAACGTGCA 59.358 55.556 0.00 0.00 42.74 4.57
827 911 1.442520 CGGGCAATCAAACGTGCAG 60.443 57.895 0.00 0.00 42.74 4.41
828 912 1.659794 GGGCAATCAAACGTGCAGT 59.340 52.632 0.00 0.00 42.74 4.40
829 913 0.664166 GGGCAATCAAACGTGCAGTG 60.664 55.000 0.00 0.00 42.74 3.66
830 914 0.030638 GGCAATCAAACGTGCAGTGT 59.969 50.000 0.00 0.00 42.74 3.55
831 915 1.265635 GGCAATCAAACGTGCAGTGTA 59.734 47.619 0.00 0.00 42.74 2.90
832 916 2.095263 GGCAATCAAACGTGCAGTGTAT 60.095 45.455 0.00 0.00 42.74 2.29
833 917 3.163594 GCAATCAAACGTGCAGTGTATC 58.836 45.455 0.00 0.00 40.58 2.24
834 918 3.407252 CAATCAAACGTGCAGTGTATCG 58.593 45.455 0.00 0.00 0.00 2.92
835 919 2.143008 TCAAACGTGCAGTGTATCGT 57.857 45.000 0.00 3.76 38.15 3.73
836 920 1.790043 TCAAACGTGCAGTGTATCGTG 59.210 47.619 8.90 0.74 36.65 4.35
837 921 0.511221 AAACGTGCAGTGTATCGTGC 59.489 50.000 8.90 0.00 40.29 5.34
844 928 0.994995 CAGTGTATCGTGCTGCTGTC 59.005 55.000 0.00 0.00 0.00 3.51
853 937 0.798776 GTGCTGCTGTCATGTACACC 59.201 55.000 0.00 0.00 33.45 4.16
863 947 3.193056 TGTCATGTACACCCATTGCAATG 59.807 43.478 28.91 28.91 31.43 2.82
869 953 0.880441 CACCCATTGCAATGTCGTCA 59.120 50.000 31.87 0.00 34.60 4.35
889 973 2.775911 TGAGGAAGTGAGGAAGCATG 57.224 50.000 0.00 0.00 0.00 4.06
896 980 4.202151 GGAAGTGAGGAAGCATGTTTGTTT 60.202 41.667 0.00 0.00 0.00 2.83
904 988 6.917533 AGGAAGCATGTTTGTTTCAGAATAG 58.082 36.000 0.00 0.00 42.85 1.73
921 1010 6.158695 TCAGAATAGGCCAGAAGAAATAAGGT 59.841 38.462 5.01 0.00 0.00 3.50
1093 2612 2.847234 ACCGCCACCACTTCCTCA 60.847 61.111 0.00 0.00 0.00 3.86
1167 2686 1.003051 GCCCCCTCACCTTCCTCTA 59.997 63.158 0.00 0.00 0.00 2.43
1582 3102 5.756195 AGCGCTTCTATATTGAAATTGCA 57.244 34.783 2.64 0.00 0.00 4.08
1600 3120 1.335872 GCACCTCCATTTCAACGTTGG 60.336 52.381 27.02 12.65 0.00 3.77
1623 3143 6.201425 TGGTTAGTTACACAATTCTCGTTGAC 59.799 38.462 0.00 0.00 33.37 3.18
1633 3153 2.118313 TCTCGTTGACGGACCTATGA 57.882 50.000 3.48 0.00 40.29 2.15
1643 3163 3.085443 CGGACCTATGATGTCTGTGTC 57.915 52.381 0.00 0.00 34.96 3.67
1651 3171 3.378911 TGATGTCTGTGTCTGCGTTTA 57.621 42.857 0.00 0.00 0.00 2.01
1684 3204 6.465439 TGACGATGGAAAGTGTATCTGTAT 57.535 37.500 0.00 0.00 0.00 2.29
1726 3246 8.974060 TGATAAAGTTTCACACCTTTAGTCTT 57.026 30.769 0.00 0.00 36.79 3.01
1735 3255 7.356089 TCACACCTTTAGTCTTCTGAGTTTA 57.644 36.000 0.00 0.00 0.00 2.01
1736 3256 7.788026 TCACACCTTTAGTCTTCTGAGTTTAA 58.212 34.615 0.00 0.00 0.00 1.52
1737 3257 8.262227 TCACACCTTTAGTCTTCTGAGTTTAAA 58.738 33.333 0.00 0.00 0.00 1.52
1758 3284 6.466885 AAACTGCTACTGGTACCTACATAG 57.533 41.667 14.36 10.12 0.00 2.23
1838 3365 7.504926 TTCAGTAATAACTAGGTTGGGTGAT 57.495 36.000 0.00 0.00 33.48 3.06
1955 3483 8.065473 TGTGATTGGAATAAATGTATTGTGCT 57.935 30.769 0.00 0.00 29.69 4.40
1957 3485 7.975616 GTGATTGGAATAAATGTATTGTGCTGT 59.024 33.333 0.00 0.00 29.69 4.40
2036 3575 9.373603 TGTTAGCACAAAATGTATTATAGTCGT 57.626 29.630 0.00 0.00 0.00 4.34
2037 3576 9.845305 GTTAGCACAAAATGTATTATAGTCGTC 57.155 33.333 0.00 0.00 0.00 4.20
2134 3673 7.692291 AGATTGAATAGTCGTAAAATGTTTGCG 59.308 33.333 5.06 5.06 0.00 4.85
2197 3823 7.599245 ACAGCTTACAACTGTACTCTATTGTTC 59.401 37.037 8.99 2.59 46.32 3.18
2215 3841 9.920133 CTATTGTTCTACTCATGTATGCAGTAT 57.080 33.333 0.00 0.00 0.00 2.12
2238 3864 0.379669 GTGCATGATCTTTGAGGCCG 59.620 55.000 0.00 0.00 0.00 6.13
2252 3878 1.834263 GAGGCCGCCTATATCCAGATT 59.166 52.381 13.29 0.00 31.76 2.40
2255 3881 2.622436 GCCGCCTATATCCAGATTGTC 58.378 52.381 0.00 0.00 0.00 3.18
2326 3952 5.403897 AAACATTGAGCGGTCGTATAATG 57.596 39.130 18.43 18.43 0.00 1.90
2412 4038 4.890581 AGTAGACTATGTGTCCTAAGCTGG 59.109 45.833 0.00 0.00 46.46 4.85
2422 4048 4.762251 GTGTCCTAAGCTGGAAGATGTTTT 59.238 41.667 0.00 0.00 37.93 2.43
2941 4600 0.249398 ACCGACCATTTCTTCTCCCG 59.751 55.000 0.00 0.00 0.00 5.14
2992 4651 6.317391 GGTCTTGAATCCTCCAAGTTTCTATG 59.683 42.308 0.00 0.00 41.18 2.23
3004 4666 6.037062 TCCAAGTTTCTATGAATACATGTGCG 59.963 38.462 9.11 0.00 37.87 5.34
3046 4708 8.977505 GTTTTTATGTAATTCTGTGCACAACAT 58.022 29.630 27.90 27.90 38.39 2.71
3067 4729 5.421056 ACATCCATCAAGATTCTGCAATTGT 59.579 36.000 7.40 0.00 0.00 2.71
3102 4764 1.003573 CCTACCTTCAGGGGCTCCT 59.996 63.158 0.00 0.00 46.26 3.69
3301 4966 9.383519 GTCAGATATTGAGATTCACTTTGGTTA 57.616 33.333 0.00 0.00 36.21 2.85
3372 5037 4.183101 ACTTGAACAACATGTTGCCAAAG 58.817 39.130 33.23 30.38 41.28 2.77
3435 5100 6.058183 AGGCAAGAATCTGTATTGGACATAC 58.942 40.000 0.00 0.00 37.45 2.39
3729 5394 5.403466 GGCAGAATTAGCAACTCACTTTTTG 59.597 40.000 4.92 0.00 0.00 2.44
3751 5416 3.891366 GCTATCCCTTAATGGTTGCATGT 59.109 43.478 0.00 0.00 0.00 3.21
3757 5422 7.067496 TCCCTTAATGGTTGCATGTTAAAAA 57.933 32.000 0.00 0.00 0.00 1.94
3761 5426 7.823799 CCTTAATGGTTGCATGTTAAAAATCCT 59.176 33.333 0.00 0.00 0.00 3.24
3877 5542 2.169352 GTGTCTGCCTGTCTGGATATGT 59.831 50.000 0.00 0.00 38.35 2.29
3887 5552 5.992217 CCTGTCTGGATATGTAGCTTTTACC 59.008 44.000 0.00 0.00 38.35 2.85
3909 5574 5.057149 CCTAATTCTGAACCCTGGAATACG 58.943 45.833 0.00 0.00 0.00 3.06
3988 5653 5.536554 AAGCACATGTTATTGAGAGAACG 57.463 39.130 0.00 0.00 29.62 3.95
4138 5803 7.282224 TGTTTTAACACTTATCTCTGCAACAGT 59.718 33.333 0.00 0.00 33.17 3.55
4275 5940 2.759795 GCTGGGCAAGAAGAGGGT 59.240 61.111 0.00 0.00 0.00 4.34
4396 6061 2.035632 GGTGGGATCTGTAGAGTGGAG 58.964 57.143 0.00 0.00 0.00 3.86
4619 6284 4.141711 GCTTCCCTAGTATGGATGTTGTCA 60.142 45.833 8.52 0.00 31.46 3.58
4871 6555 7.067494 GGATAACTAACTTTCTACGGACTGGTA 59.933 40.741 0.00 0.00 0.00 3.25
4890 6574 4.202284 TGGTAGTGTCAAGTTTGGTCTACC 60.202 45.833 20.44 20.44 41.09 3.18
4908 6592 3.488423 CTGACCTCAGGGGCTGTT 58.512 61.111 0.00 0.00 42.43 3.16
4909 6593 1.763770 CTGACCTCAGGGGCTGTTT 59.236 57.895 0.00 0.00 42.43 2.83
4910 6594 0.607489 CTGACCTCAGGGGCTGTTTG 60.607 60.000 0.00 0.00 42.43 2.93
4911 6595 1.303643 GACCTCAGGGGCTGTTTGG 60.304 63.158 0.00 0.00 37.73 3.28
4912 6596 2.069165 GACCTCAGGGGCTGTTTGGT 62.069 60.000 0.00 0.00 37.73 3.67
4913 6597 1.153756 CCTCAGGGGCTGTTTGGTT 59.846 57.895 0.00 0.00 32.61 3.67
4914 6598 0.469892 CCTCAGGGGCTGTTTGGTTT 60.470 55.000 0.00 0.00 32.61 3.27
4915 6599 0.675633 CTCAGGGGCTGTTTGGTTTG 59.324 55.000 0.00 0.00 32.61 2.93
4916 6600 0.032615 TCAGGGGCTGTTTGGTTTGT 60.033 50.000 0.00 0.00 32.61 2.83
4917 6601 0.104671 CAGGGGCTGTTTGGTTTGTG 59.895 55.000 0.00 0.00 0.00 3.33
4918 6602 0.032615 AGGGGCTGTTTGGTTTGTGA 60.033 50.000 0.00 0.00 0.00 3.58
4919 6603 0.104120 GGGGCTGTTTGGTTTGTGAC 59.896 55.000 0.00 0.00 0.00 3.67
4920 6604 1.111277 GGGCTGTTTGGTTTGTGACT 58.889 50.000 0.00 0.00 0.00 3.41
4921 6605 2.303175 GGGCTGTTTGGTTTGTGACTA 58.697 47.619 0.00 0.00 0.00 2.59
4922 6606 2.691011 GGGCTGTTTGGTTTGTGACTAA 59.309 45.455 0.00 0.00 0.00 2.24
4923 6607 3.490249 GGGCTGTTTGGTTTGTGACTAAC 60.490 47.826 1.25 1.25 0.00 2.34
4924 6608 3.380320 GGCTGTTTGGTTTGTGACTAACT 59.620 43.478 9.55 0.00 0.00 2.24
4925 6609 4.142249 GGCTGTTTGGTTTGTGACTAACTT 60.142 41.667 9.55 0.00 0.00 2.66
4926 6610 5.407502 GCTGTTTGGTTTGTGACTAACTTT 58.592 37.500 9.55 0.00 0.00 2.66
4927 6611 5.288472 GCTGTTTGGTTTGTGACTAACTTTG 59.712 40.000 9.55 0.00 0.00 2.77
4928 6612 6.334102 TGTTTGGTTTGTGACTAACTTTGT 57.666 33.333 9.55 0.00 0.00 2.83
4929 6613 6.383415 TGTTTGGTTTGTGACTAACTTTGTC 58.617 36.000 9.55 0.00 35.21 3.18
4930 6614 6.016192 TGTTTGGTTTGTGACTAACTTTGTCA 60.016 34.615 9.55 2.35 41.48 3.58
4931 6615 6.576662 TTGGTTTGTGACTAACTTTGTCAA 57.423 33.333 9.55 2.93 44.63 3.18
4932 6616 6.576662 TGGTTTGTGACTAACTTTGTCAAA 57.423 33.333 9.55 0.45 44.63 2.69
4933 6617 6.616947 TGGTTTGTGACTAACTTTGTCAAAG 58.383 36.000 21.34 21.34 44.63 2.77
4934 6618 6.431543 TGGTTTGTGACTAACTTTGTCAAAGA 59.568 34.615 28.07 9.07 44.63 2.52
4935 6619 7.122055 TGGTTTGTGACTAACTTTGTCAAAGAT 59.878 33.333 28.07 20.10 44.63 2.40
4936 6620 7.973944 GGTTTGTGACTAACTTTGTCAAAGATT 59.026 33.333 28.07 19.86 44.63 2.40
4937 6621 8.798153 GTTTGTGACTAACTTTGTCAAAGATTG 58.202 33.333 28.07 19.96 44.63 2.67
4938 6622 6.494842 TGTGACTAACTTTGTCAAAGATTGC 58.505 36.000 28.07 14.80 44.63 3.56
4939 6623 5.915196 GTGACTAACTTTGTCAAAGATTGCC 59.085 40.000 28.07 12.86 44.63 4.52
4940 6624 5.592282 TGACTAACTTTGTCAAAGATTGCCA 59.408 36.000 28.07 15.02 40.89 4.92
4941 6625 5.831997 ACTAACTTTGTCAAAGATTGCCAC 58.168 37.500 28.07 0.00 41.02 5.01
4942 6626 4.734398 AACTTTGTCAAAGATTGCCACA 57.266 36.364 28.07 0.00 41.02 4.17
4943 6627 4.045636 ACTTTGTCAAAGATTGCCACAC 57.954 40.909 28.07 0.00 41.02 3.82
4944 6628 3.181476 ACTTTGTCAAAGATTGCCACACC 60.181 43.478 28.07 0.00 41.02 4.16
4945 6629 2.363306 TGTCAAAGATTGCCACACCT 57.637 45.000 0.00 0.00 0.00 4.00
4946 6630 3.500448 TGTCAAAGATTGCCACACCTA 57.500 42.857 0.00 0.00 0.00 3.08
4947 6631 3.826524 TGTCAAAGATTGCCACACCTAA 58.173 40.909 0.00 0.00 0.00 2.69
4948 6632 3.820467 TGTCAAAGATTGCCACACCTAAG 59.180 43.478 0.00 0.00 0.00 2.18
4949 6633 3.191371 GTCAAAGATTGCCACACCTAAGG 59.809 47.826 0.00 0.00 0.00 2.69
4950 6634 3.157087 CAAAGATTGCCACACCTAAGGT 58.843 45.455 0.00 0.00 35.62 3.50
4951 6635 3.525800 AAGATTGCCACACCTAAGGTT 57.474 42.857 0.00 0.00 31.02 3.50
4952 6636 4.650972 AAGATTGCCACACCTAAGGTTA 57.349 40.909 0.00 0.00 31.02 2.85
4953 6637 4.222124 AGATTGCCACACCTAAGGTTAG 57.778 45.455 0.00 0.00 31.02 2.34
4965 6649 3.756963 CCTAAGGTTAGGCAAGTTTGACC 59.243 47.826 2.80 0.00 43.43 4.02
4966 6650 3.306472 AAGGTTAGGCAAGTTTGACCA 57.694 42.857 0.00 0.00 36.67 4.02
4967 6651 3.306472 AGGTTAGGCAAGTTTGACCAA 57.694 42.857 0.00 0.00 36.67 3.67
4968 6652 2.956333 AGGTTAGGCAAGTTTGACCAAC 59.044 45.455 1.06 1.06 36.67 3.77
4978 6662 4.772886 AGTTTGACCAACTTAGGTGAGT 57.227 40.909 0.00 0.00 43.89 3.41
4979 6663 4.451900 AGTTTGACCAACTTAGGTGAGTG 58.548 43.478 0.00 0.00 43.89 3.51
4980 6664 4.080526 AGTTTGACCAACTTAGGTGAGTGT 60.081 41.667 0.00 0.00 43.89 3.55
4981 6665 4.497291 TTGACCAACTTAGGTGAGTGTT 57.503 40.909 0.00 0.00 43.38 3.32
4982 6666 4.497291 TGACCAACTTAGGTGAGTGTTT 57.503 40.909 0.00 0.00 43.38 2.83
4983 6667 4.196193 TGACCAACTTAGGTGAGTGTTTG 58.804 43.478 0.00 0.00 43.38 2.93
4984 6668 3.551846 ACCAACTTAGGTGAGTGTTTGG 58.448 45.455 0.00 0.00 41.30 3.28
4985 6669 3.053917 ACCAACTTAGGTGAGTGTTTGGT 60.054 43.478 0.00 0.00 41.30 3.67
4986 6670 3.951680 CCAACTTAGGTGAGTGTTTGGTT 59.048 43.478 0.00 0.00 0.00 3.67
4987 6671 4.036380 CCAACTTAGGTGAGTGTTTGGTTC 59.964 45.833 0.00 0.00 0.00 3.62
4988 6672 4.497291 ACTTAGGTGAGTGTTTGGTTCA 57.503 40.909 0.00 0.00 0.00 3.18
4989 6673 4.850680 ACTTAGGTGAGTGTTTGGTTCAA 58.149 39.130 0.00 0.00 0.00 2.69
4990 6674 4.881850 ACTTAGGTGAGTGTTTGGTTCAAG 59.118 41.667 0.00 0.00 0.00 3.02
4991 6675 2.024414 AGGTGAGTGTTTGGTTCAAGC 58.976 47.619 0.00 0.00 0.00 4.01
4992 6676 1.067060 GGTGAGTGTTTGGTTCAAGCC 59.933 52.381 0.00 0.00 0.00 4.35
4993 6677 1.748493 GTGAGTGTTTGGTTCAAGCCA 59.252 47.619 0.00 0.00 36.62 4.75
4994 6678 1.748493 TGAGTGTTTGGTTCAAGCCAC 59.252 47.619 0.00 0.00 38.42 5.01
4995 6679 1.748493 GAGTGTTTGGTTCAAGCCACA 59.252 47.619 11.95 0.00 38.42 4.17
4996 6680 1.476488 AGTGTTTGGTTCAAGCCACAC 59.524 47.619 10.00 10.00 39.10 3.82
4997 6681 0.820871 TGTTTGGTTCAAGCCACACC 59.179 50.000 0.54 0.00 38.17 4.16
4998 6682 1.111277 GTTTGGTTCAAGCCACACCT 58.889 50.000 0.00 0.00 38.42 4.00
4999 6683 1.480545 GTTTGGTTCAAGCCACACCTT 59.519 47.619 0.00 0.00 38.42 3.50
5000 6684 2.691011 GTTTGGTTCAAGCCACACCTTA 59.309 45.455 0.00 0.00 38.42 2.69
5001 6685 2.270352 TGGTTCAAGCCACACCTTAG 57.730 50.000 0.00 0.00 32.81 2.18
5002 6686 1.202879 TGGTTCAAGCCACACCTTAGG 60.203 52.381 0.00 0.00 32.81 2.69
5008 6692 4.002797 CCACACCTTAGGCAAGCC 57.997 61.111 2.02 2.02 0.00 4.35
5009 6693 1.074775 CCACACCTTAGGCAAGCCA 59.925 57.895 14.40 0.00 38.92 4.75
5010 6694 1.244019 CCACACCTTAGGCAAGCCAC 61.244 60.000 14.40 0.00 38.92 5.01
5011 6695 0.537143 CACACCTTAGGCAAGCCACA 60.537 55.000 14.40 0.00 38.92 4.17
5012 6696 0.537371 ACACCTTAGGCAAGCCACAC 60.537 55.000 14.40 0.00 38.92 3.82
5013 6697 0.250901 CACCTTAGGCAAGCCACACT 60.251 55.000 14.40 0.00 38.92 3.55
5014 6698 0.478507 ACCTTAGGCAAGCCACACTT 59.521 50.000 14.40 0.00 40.05 3.16
5021 6705 4.599036 AAGCCACACTTGAACCCC 57.401 55.556 0.00 0.00 37.17 4.95
5022 6706 1.618030 AAGCCACACTTGAACCCCA 59.382 52.632 0.00 0.00 37.17 4.96
5023 6707 0.755327 AAGCCACACTTGAACCCCAC 60.755 55.000 0.00 0.00 37.17 4.61
5024 6708 1.454847 GCCACACTTGAACCCCACA 60.455 57.895 0.00 0.00 0.00 4.17
5025 6709 0.827507 GCCACACTTGAACCCCACAT 60.828 55.000 0.00 0.00 0.00 3.21
5026 6710 0.961019 CCACACTTGAACCCCACATG 59.039 55.000 0.00 0.00 0.00 3.21
5027 6711 0.961019 CACACTTGAACCCCACATGG 59.039 55.000 0.00 0.00 0.00 3.66
5028 6712 0.827507 ACACTTGAACCCCACATGGC 60.828 55.000 0.00 0.00 0.00 4.40
5029 6713 0.827089 CACTTGAACCCCACATGGCA 60.827 55.000 0.00 0.00 0.00 4.92
5030 6714 0.114954 ACTTGAACCCCACATGGCAT 59.885 50.000 0.00 0.00 0.00 4.40
5031 6715 1.357420 ACTTGAACCCCACATGGCATA 59.643 47.619 0.00 0.00 0.00 3.14
5032 6716 1.750778 CTTGAACCCCACATGGCATAC 59.249 52.381 0.00 0.00 0.00 2.39
5033 6717 0.701147 TGAACCCCACATGGCATACA 59.299 50.000 0.00 0.00 0.00 2.29
5034 6718 1.102978 GAACCCCACATGGCATACAC 58.897 55.000 0.00 0.00 0.00 2.90
5035 6719 0.407528 AACCCCACATGGCATACACA 59.592 50.000 0.00 0.00 0.00 3.72
5036 6720 0.323360 ACCCCACATGGCATACACAC 60.323 55.000 0.00 0.00 0.00 3.82
5037 6721 0.323269 CCCCACATGGCATACACACA 60.323 55.000 0.00 0.00 0.00 3.72
5038 6722 1.543607 CCCACATGGCATACACACAA 58.456 50.000 0.00 0.00 0.00 3.33
5039 6723 1.891811 CCCACATGGCATACACACAAA 59.108 47.619 0.00 0.00 0.00 2.83
5040 6724 2.298446 CCCACATGGCATACACACAAAA 59.702 45.455 0.00 0.00 0.00 2.44
5041 6725 3.244009 CCCACATGGCATACACACAAAAA 60.244 43.478 0.00 0.00 0.00 1.94
5042 6726 3.989167 CCACATGGCATACACACAAAAAG 59.011 43.478 0.00 0.00 0.00 2.27
5043 6727 4.501229 CCACATGGCATACACACAAAAAGT 60.501 41.667 0.00 0.00 0.00 2.66
5056 6740 4.058721 ACAAAAAGTGTGGCAAGATTCC 57.941 40.909 0.00 0.00 39.72 3.01
5057 6741 3.706086 ACAAAAAGTGTGGCAAGATTCCT 59.294 39.130 0.00 0.00 39.72 3.36
5058 6742 4.162131 ACAAAAAGTGTGGCAAGATTCCTT 59.838 37.500 0.00 0.00 39.72 3.36
5059 6743 5.118286 CAAAAAGTGTGGCAAGATTCCTTT 58.882 37.500 0.00 0.00 0.00 3.11
5060 6744 6.127196 ACAAAAAGTGTGGCAAGATTCCTTTA 60.127 34.615 0.00 0.00 39.72 1.85
5061 6745 5.712152 AAAGTGTGGCAAGATTCCTTTAG 57.288 39.130 0.00 0.00 0.00 1.85
5062 6746 3.690460 AGTGTGGCAAGATTCCTTTAGG 58.310 45.455 0.00 0.00 0.00 2.69
5063 6747 2.164422 GTGTGGCAAGATTCCTTTAGGC 59.836 50.000 0.00 0.00 34.44 3.93
5064 6748 2.041620 TGTGGCAAGATTCCTTTAGGCT 59.958 45.455 0.00 0.00 34.44 4.58
5065 6749 3.092301 GTGGCAAGATTCCTTTAGGCTT 58.908 45.455 0.00 0.00 34.44 4.35
5066 6750 3.091545 TGGCAAGATTCCTTTAGGCTTG 58.908 45.455 0.00 9.14 36.51 4.01
5067 6751 3.092301 GGCAAGATTCCTTTAGGCTTGT 58.908 45.455 12.96 0.00 36.11 3.16
5068 6752 3.129462 GGCAAGATTCCTTTAGGCTTGTC 59.871 47.826 12.96 8.93 36.11 3.18
5069 6753 3.758554 GCAAGATTCCTTTAGGCTTGTCA 59.241 43.478 12.96 0.00 36.11 3.58
5070 6754 4.218417 GCAAGATTCCTTTAGGCTTGTCAA 59.782 41.667 12.96 0.00 36.11 3.18
5071 6755 5.703876 CAAGATTCCTTTAGGCTTGTCAAC 58.296 41.667 0.00 0.00 32.01 3.18
5072 6756 5.248380 AGATTCCTTTAGGCTTGTCAACT 57.752 39.130 0.00 0.00 34.44 3.16
5073 6757 5.635120 AGATTCCTTTAGGCTTGTCAACTT 58.365 37.500 0.00 0.00 34.44 2.66
5074 6758 5.474876 AGATTCCTTTAGGCTTGTCAACTTG 59.525 40.000 0.00 0.00 34.44 3.16
5075 6759 4.164843 TCCTTTAGGCTTGTCAACTTGT 57.835 40.909 0.00 0.00 34.44 3.16
5076 6760 3.882888 TCCTTTAGGCTTGTCAACTTGTG 59.117 43.478 0.00 0.00 34.44 3.33
5077 6761 3.004734 CCTTTAGGCTTGTCAACTTGTGG 59.995 47.826 0.00 0.00 0.00 4.17
5078 6762 1.604604 TAGGCTTGTCAACTTGTGGC 58.395 50.000 0.00 0.00 0.00 5.01
5079 6763 0.106519 AGGCTTGTCAACTTGTGGCT 60.107 50.000 0.00 0.00 30.97 4.75
5080 6764 0.312102 GGCTTGTCAACTTGTGGCTC 59.688 55.000 0.00 0.00 30.97 4.70
5081 6765 1.312815 GCTTGTCAACTTGTGGCTCT 58.687 50.000 0.00 0.00 30.97 4.09
5082 6766 1.678101 GCTTGTCAACTTGTGGCTCTT 59.322 47.619 0.00 0.00 30.97 2.85
5083 6767 2.878406 GCTTGTCAACTTGTGGCTCTTA 59.122 45.455 0.00 0.00 30.97 2.10
5084 6768 3.503748 GCTTGTCAACTTGTGGCTCTTAT 59.496 43.478 0.00 0.00 30.97 1.73
5085 6769 4.022849 GCTTGTCAACTTGTGGCTCTTATT 60.023 41.667 0.00 0.00 30.97 1.40
5086 6770 5.507985 GCTTGTCAACTTGTGGCTCTTATTT 60.508 40.000 0.00 0.00 30.97 1.40
5087 6771 6.463995 TTGTCAACTTGTGGCTCTTATTTT 57.536 33.333 0.00 0.00 30.97 1.82
5088 6772 5.830912 TGTCAACTTGTGGCTCTTATTTTG 58.169 37.500 0.00 0.00 30.97 2.44
5089 6773 5.592282 TGTCAACTTGTGGCTCTTATTTTGA 59.408 36.000 0.00 0.00 30.97 2.69
5090 6774 6.265196 TGTCAACTTGTGGCTCTTATTTTGAT 59.735 34.615 0.00 0.00 30.97 2.57
5091 6775 6.583806 GTCAACTTGTGGCTCTTATTTTGATG 59.416 38.462 0.00 0.00 0.00 3.07
5092 6776 6.489700 TCAACTTGTGGCTCTTATTTTGATGA 59.510 34.615 0.00 0.00 0.00 2.92
5093 6777 6.899393 ACTTGTGGCTCTTATTTTGATGAA 57.101 33.333 0.00 0.00 0.00 2.57
5094 6778 6.681777 ACTTGTGGCTCTTATTTTGATGAAC 58.318 36.000 0.00 0.00 0.00 3.18
5095 6779 6.491403 ACTTGTGGCTCTTATTTTGATGAACT 59.509 34.615 0.00 0.00 0.00 3.01
5096 6780 7.665559 ACTTGTGGCTCTTATTTTGATGAACTA 59.334 33.333 0.00 0.00 0.00 2.24
5097 6781 7.994425 TGTGGCTCTTATTTTGATGAACTAA 57.006 32.000 0.00 0.00 0.00 2.24
5098 6782 8.579850 TGTGGCTCTTATTTTGATGAACTAAT 57.420 30.769 0.00 0.00 0.00 1.73
5099 6783 8.677300 TGTGGCTCTTATTTTGATGAACTAATC 58.323 33.333 0.00 0.00 0.00 1.75
5100 6784 8.897752 GTGGCTCTTATTTTGATGAACTAATCT 58.102 33.333 0.00 0.00 0.00 2.40
5101 6785 9.466497 TGGCTCTTATTTTGATGAACTAATCTT 57.534 29.630 0.00 0.00 0.00 2.40
5147 6831 9.712305 ATATGGTAAAGTATGACAATGCTAGTC 57.288 33.333 0.00 0.00 36.55 2.59
5148 6832 6.346096 TGGTAAAGTATGACAATGCTAGTCC 58.654 40.000 0.00 0.00 35.15 3.85
5149 6833 6.156256 TGGTAAAGTATGACAATGCTAGTCCT 59.844 38.462 0.00 0.00 35.15 3.85
5150 6834 7.343574 TGGTAAAGTATGACAATGCTAGTCCTA 59.656 37.037 0.00 0.00 35.15 2.94
5151 6835 8.202137 GGTAAAGTATGACAATGCTAGTCCTAA 58.798 37.037 0.00 0.00 35.15 2.69
5152 6836 9.595823 GTAAAGTATGACAATGCTAGTCCTAAA 57.404 33.333 0.00 0.00 35.15 1.85
5154 6838 9.686683 AAAGTATGACAATGCTAGTCCTAAAAT 57.313 29.630 0.00 0.00 35.15 1.82
5155 6839 8.894768 AGTATGACAATGCTAGTCCTAAAATC 57.105 34.615 0.00 0.00 35.15 2.17
5156 6840 8.486210 AGTATGACAATGCTAGTCCTAAAATCA 58.514 33.333 0.00 0.00 35.15 2.57
5157 6841 9.109393 GTATGACAATGCTAGTCCTAAAATCAA 57.891 33.333 0.00 0.00 35.15 2.57
5158 6842 7.994425 TGACAATGCTAGTCCTAAAATCAAA 57.006 32.000 0.00 0.00 35.15 2.69
5159 6843 7.816640 TGACAATGCTAGTCCTAAAATCAAAC 58.183 34.615 0.00 0.00 35.15 2.93
5160 6844 7.446931 TGACAATGCTAGTCCTAAAATCAAACA 59.553 33.333 0.00 0.00 35.15 2.83
5161 6845 7.820648 ACAATGCTAGTCCTAAAATCAAACAG 58.179 34.615 0.00 0.00 0.00 3.16
5162 6846 5.880054 TGCTAGTCCTAAAATCAAACAGC 57.120 39.130 0.00 0.00 0.00 4.40
5163 6847 4.700213 TGCTAGTCCTAAAATCAAACAGCC 59.300 41.667 0.00 0.00 0.00 4.85
5164 6848 4.944317 GCTAGTCCTAAAATCAAACAGCCT 59.056 41.667 0.00 0.00 0.00 4.58
5165 6849 5.065346 GCTAGTCCTAAAATCAAACAGCCTC 59.935 44.000 0.00 0.00 0.00 4.70
5182 6866 3.511540 AGCCTCTACATTATCTATGCGCA 59.488 43.478 14.96 14.96 37.81 6.09
5251 6941 5.183904 AGACAATAATGTTGGACAAGCTTCC 59.816 40.000 0.00 0.00 40.74 3.46
5252 6942 4.832266 ACAATAATGTTGGACAAGCTTCCA 59.168 37.500 2.82 2.82 44.39 3.53
5259 6980 3.228188 TGGACAAGCTTCCAACTCATT 57.772 42.857 4.57 0.00 43.04 2.57
5279 7000 5.826737 TCATTAGGGTTTTGTTTCGGTACAA 59.173 36.000 0.00 0.06 36.30 2.41
5360 7082 3.609853 TGCAGATCAAACCTGGATACAC 58.390 45.455 0.00 0.00 46.17 2.90
5361 7083 2.609459 GCAGATCAAACCTGGATACACG 59.391 50.000 0.00 0.00 46.17 4.49
5363 7085 2.170607 AGATCAAACCTGGATACACGGG 59.829 50.000 0.00 0.00 46.17 5.28
5375 7097 3.305881 GGATACACGGGCTATGAAGTACC 60.306 52.174 0.00 0.00 0.00 3.34
5385 7108 5.652452 GGGCTATGAAGTACCTTTTGATTGT 59.348 40.000 0.00 0.00 0.00 2.71
5391 7114 3.964411 AGTACCTTTTGATTGTAGGGGC 58.036 45.455 0.00 0.00 33.22 5.80
5432 7155 2.684001 TAATCTGCACCGAAATCCGT 57.316 45.000 0.00 0.00 36.31 4.69
5438 7161 1.801771 TGCACCGAAATCCGTAAACTG 59.198 47.619 0.00 0.00 36.31 3.16
5455 7178 1.897802 ACTGTTCTAGGGGGTGTAACG 59.102 52.381 0.00 0.00 38.12 3.18
5469 7192 3.547413 GGTGTAACGGAAGCAAAGTTCAC 60.547 47.826 0.00 0.00 38.12 3.18
5477 7200 4.142534 CGGAAGCAAAGTTCACATCATCAT 60.143 41.667 0.00 0.00 0.00 2.45
5481 7204 5.014858 AGCAAAGTTCACATCATCATTCCT 58.985 37.500 0.00 0.00 0.00 3.36
5482 7205 5.125097 AGCAAAGTTCACATCATCATTCCTC 59.875 40.000 0.00 0.00 0.00 3.71
5487 7210 6.056236 AGTTCACATCATCATTCCTCATCAG 58.944 40.000 0.00 0.00 0.00 2.90
5515 7239 4.377370 TGTGGCCACATCTCAACG 57.623 55.556 34.74 0.00 36.21 4.10
5527 7251 3.243401 ACATCTCAACGTGCGCATATCTA 60.243 43.478 15.91 0.00 0.00 1.98
5538 7263 5.856986 CGTGCGCATATCTACTACACTTAAT 59.143 40.000 15.91 0.00 0.00 1.40
5540 7265 7.536281 CGTGCGCATATCTACTACACTTAATTA 59.464 37.037 15.91 0.00 0.00 1.40
5554 7279 9.203421 CTACACTTAATTATTGGACATATCGCA 57.797 33.333 0.00 0.00 0.00 5.10
5555 7280 8.621532 ACACTTAATTATTGGACATATCGCAT 57.378 30.769 0.00 0.00 0.00 4.73
5556 7281 9.719355 ACACTTAATTATTGGACATATCGCATA 57.281 29.630 0.00 0.00 0.00 3.14
5557 7282 9.973246 CACTTAATTATTGGACATATCGCATAC 57.027 33.333 0.00 0.00 0.00 2.39
5558 7283 9.162764 ACTTAATTATTGGACATATCGCATACC 57.837 33.333 0.00 0.00 0.00 2.73
5559 7284 9.161629 CTTAATTATTGGACATATCGCATACCA 57.838 33.333 0.00 0.00 0.00 3.25
5560 7285 9.679661 TTAATTATTGGACATATCGCATACCAT 57.320 29.630 0.00 0.00 0.00 3.55
5561 7286 8.579850 AATTATTGGACATATCGCATACCATT 57.420 30.769 0.00 0.00 0.00 3.16
5562 7287 7.994425 TTATTGGACATATCGCATACCATTT 57.006 32.000 0.00 0.00 0.00 2.32
5563 7288 6.899393 ATTGGACATATCGCATACCATTTT 57.101 33.333 0.00 0.00 0.00 1.82
5564 7289 5.940192 TGGACATATCGCATACCATTTTC 57.060 39.130 0.00 0.00 0.00 2.29
5565 7290 5.372373 TGGACATATCGCATACCATTTTCA 58.628 37.500 0.00 0.00 0.00 2.69
5566 7291 6.003326 TGGACATATCGCATACCATTTTCAT 58.997 36.000 0.00 0.00 0.00 2.57
5567 7292 6.489700 TGGACATATCGCATACCATTTTCATT 59.510 34.615 0.00 0.00 0.00 2.57
5568 7293 7.014134 TGGACATATCGCATACCATTTTCATTT 59.986 33.333 0.00 0.00 0.00 2.32
5569 7294 7.867403 GGACATATCGCATACCATTTTCATTTT 59.133 33.333 0.00 0.00 0.00 1.82
5570 7295 8.578308 ACATATCGCATACCATTTTCATTTTG 57.422 30.769 0.00 0.00 0.00 2.44
5571 7296 5.971895 ATCGCATACCATTTTCATTTTGC 57.028 34.783 0.00 0.00 0.00 3.68
5572 7297 4.814147 TCGCATACCATTTTCATTTTGCA 58.186 34.783 0.00 0.00 0.00 4.08
5573 7298 5.233225 TCGCATACCATTTTCATTTTGCAA 58.767 33.333 0.00 0.00 0.00 4.08
5574 7299 5.698089 TCGCATACCATTTTCATTTTGCAAA 59.302 32.000 8.05 8.05 0.00 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 120 0.749454 ACCTCGATTGGCATGCTTCC 60.749 55.000 18.92 0.95 0.00 3.46
199 219 2.496341 CTCGAGGCGATTGGAGCA 59.504 61.111 3.91 0.00 34.61 4.26
236 256 4.440103 GGTTCATCTTACATAGTACGCACG 59.560 45.833 0.00 0.00 0.00 5.34
304 326 5.699839 TCGTCATGACTTCCGATACATATG 58.300 41.667 22.95 0.00 0.00 1.78
305 327 5.959618 TCGTCATGACTTCCGATACATAT 57.040 39.130 22.95 0.00 0.00 1.78
316 338 4.112634 CGACCATAACATCGTCATGACTT 58.887 43.478 22.95 12.92 33.72 3.01
460 508 1.185618 CCTCCGACCACCTTCACTGA 61.186 60.000 0.00 0.00 0.00 3.41
489 537 1.656095 GGTGAAGCAGATCGAAGAACG 59.344 52.381 0.00 0.00 43.58 3.95
531 582 1.156322 TCTCCCCTCTCCCCACTCTT 61.156 60.000 0.00 0.00 0.00 2.85
736 816 4.060038 CTGAATACACCGTTCAGCCTAT 57.940 45.455 3.28 0.00 44.07 2.57
747 827 1.917872 TTGGTTGGCCTGAATACACC 58.082 50.000 3.32 0.00 35.27 4.16
789 873 0.625849 CATAAGGCCCAACCAGGTCT 59.374 55.000 0.00 0.00 46.43 3.85
791 875 1.000359 GCATAAGGCCCAACCAGGT 60.000 57.895 0.00 0.00 43.14 4.00
826 910 0.603065 TGACAGCAGCACGATACACT 59.397 50.000 0.00 0.00 0.00 3.55
827 911 1.325640 CATGACAGCAGCACGATACAC 59.674 52.381 0.00 0.00 0.00 2.90
828 912 1.066929 ACATGACAGCAGCACGATACA 60.067 47.619 0.00 0.00 0.00 2.29
829 913 1.645034 ACATGACAGCAGCACGATAC 58.355 50.000 0.00 0.00 0.00 2.24
830 914 2.165437 TGTACATGACAGCAGCACGATA 59.835 45.455 0.00 0.00 32.86 2.92
831 915 1.066929 TGTACATGACAGCAGCACGAT 60.067 47.619 0.00 0.00 32.86 3.73
832 916 0.316841 TGTACATGACAGCAGCACGA 59.683 50.000 0.00 0.00 32.86 4.35
833 917 0.439985 GTGTACATGACAGCAGCACG 59.560 55.000 0.00 0.00 39.29 5.34
844 928 3.731565 CGACATTGCAATGGGTGTACATG 60.732 47.826 35.85 14.80 40.70 3.21
853 937 2.223409 CCTCATGACGACATTGCAATGG 60.223 50.000 35.85 24.21 40.70 3.16
863 947 1.819288 TCCTCACTTCCTCATGACGAC 59.181 52.381 0.00 0.00 0.00 4.34
869 953 2.575279 ACATGCTTCCTCACTTCCTCAT 59.425 45.455 0.00 0.00 0.00 2.90
889 973 5.473504 TCTTCTGGCCTATTCTGAAACAAAC 59.526 40.000 3.32 0.00 0.00 2.93
896 980 6.158695 ACCTTATTTCTTCTGGCCTATTCTGA 59.841 38.462 3.32 0.00 0.00 3.27
904 988 7.646548 AATTAGAACCTTATTTCTTCTGGCC 57.353 36.000 0.00 0.00 37.09 5.36
931 1020 3.250617 AGTTGGGAATTCTTGGCCATTT 58.749 40.909 6.09 0.00 0.00 2.32
935 2454 1.550524 GGAAGTTGGGAATTCTTGGCC 59.449 52.381 5.23 0.00 0.00 5.36
978 2497 2.040412 AGTGGAAATCTTGTGGGACCTC 59.960 50.000 0.00 0.00 0.00 3.85
982 2501 2.225017 GGGAAGTGGAAATCTTGTGGGA 60.225 50.000 0.00 0.00 0.00 4.37
1050 2569 4.113815 CCATGGGCGGAGGAAGCA 62.114 66.667 2.85 0.00 36.08 3.91
1093 2612 1.995626 CTTGGGGGTGGACGAGGAT 60.996 63.158 0.00 0.00 0.00 3.24
1582 3102 2.358322 ACCAACGTTGAAATGGAGGT 57.642 45.000 29.35 13.12 37.66 3.85
1600 3120 6.286941 CGTCAACGAGAATTGTGTAACTAAC 58.713 40.000 0.00 0.00 43.02 2.34
1623 3143 2.690497 AGACACAGACATCATAGGTCCG 59.310 50.000 0.00 0.00 35.89 4.79
1633 3153 3.664107 ACATAAACGCAGACACAGACAT 58.336 40.909 0.00 0.00 0.00 3.06
1643 3163 5.672051 TCGTCAAAAGTAACATAAACGCAG 58.328 37.500 0.00 0.00 0.00 5.18
1651 3171 6.262273 ACACTTTCCATCGTCAAAAGTAACAT 59.738 34.615 0.00 0.00 40.32 2.71
1684 3204 9.778741 AACTTTATCAGTGAGTGAACAGAATAA 57.221 29.630 0.00 0.00 39.19 1.40
1691 3211 7.126398 GTGTGAAACTTTATCAGTGAGTGAAC 58.874 38.462 0.00 0.00 36.72 3.18
1698 3218 8.154649 ACTAAAGGTGTGAAACTTTATCAGTG 57.845 34.615 0.00 0.00 38.19 3.66
1726 3246 5.546621 ACCAGTAGCAGTTTAAACTCAGA 57.453 39.130 18.00 3.42 37.08 3.27
1735 3255 5.956563 ACTATGTAGGTACCAGTAGCAGTTT 59.043 40.000 15.94 0.00 36.11 2.66
1736 3256 5.516984 ACTATGTAGGTACCAGTAGCAGTT 58.483 41.667 15.94 0.00 36.11 3.16
1737 3257 5.126699 ACTATGTAGGTACCAGTAGCAGT 57.873 43.478 15.94 6.95 36.11 4.40
1772 3298 8.890472 TCCTGGGAATATAACAAGTGCTATTAT 58.110 33.333 0.00 0.00 0.00 1.28
1777 3303 4.687219 GCTCCTGGGAATATAACAAGTGCT 60.687 45.833 0.00 0.00 0.00 4.40
1793 3320 1.627834 ACTTCTCCTTCTTGCTCCTGG 59.372 52.381 0.00 0.00 0.00 4.45
1838 3365 9.168451 GATGATATCTCAAGTCTATAAGACGGA 57.832 37.037 3.98 3.57 40.63 4.69
1871 3398 1.880027 CTCACCAAACCACTGTAAGGC 59.120 52.381 0.00 0.00 39.30 4.35
1901 3428 9.574516 ACATAGAAAAAGAAAACATGTAGGAGT 57.425 29.630 0.00 0.00 0.00 3.85
1931 3459 7.975616 ACAGCACAATACATTTATTCCAATCAC 59.024 33.333 0.00 0.00 0.00 3.06
1937 3465 6.473455 GCTCAACAGCACAATACATTTATTCC 59.527 38.462 0.00 0.00 46.06 3.01
1957 3485 3.703556 TGAACCTTGTTGGAATTGCTCAA 59.296 39.130 0.00 3.62 39.71 3.02
2035 3574 7.929941 AATTTCTGAGGAATAAAGGAGTGAC 57.070 36.000 0.00 0.00 0.00 3.67
2134 3673 4.580580 ACATGGACTTTCAGACCAACTTTC 59.419 41.667 0.00 0.00 42.84 2.62
2168 3794 8.861101 CAATAGAGTACAGTTGTAAGCTGTAAC 58.139 37.037 5.66 0.00 46.81 2.50
2197 3823 5.797434 CACGCTATACTGCATACATGAGTAG 59.203 44.000 0.00 0.30 32.86 2.57
2215 3841 2.554142 CCTCAAAGATCATGCACGCTA 58.446 47.619 0.00 0.00 0.00 4.26
2238 3864 3.516615 GAGCGACAATCTGGATATAGGC 58.483 50.000 0.00 0.00 0.00 3.93
2395 4021 5.163364 ACATCTTCCAGCTTAGGACACATAG 60.163 44.000 0.00 0.00 37.42 2.23
2412 4038 7.362662 TGTCTACAGCATTCAAAAACATCTTC 58.637 34.615 0.00 0.00 0.00 2.87
2422 4048 9.317936 CTAAGAACATATGTCTACAGCATTCAA 57.682 33.333 9.23 0.00 0.00 2.69
2721 4380 4.335594 AGAAGGTCCGAAAACTGAACAAAG 59.664 41.667 0.00 0.00 0.00 2.77
2992 4651 6.111768 AGAACTCAATTCGCACATGTATTC 57.888 37.500 0.00 0.00 42.69 1.75
3004 4666 7.360361 ACATAAAAACGTGGAGAACTCAATTC 58.640 34.615 4.23 0.00 37.62 2.17
3046 4708 4.095334 CGACAATTGCAGAATCTTGATGGA 59.905 41.667 5.05 0.00 0.00 3.41
3067 4729 4.588951 AGGTAGGATTATGAACATGCTCGA 59.411 41.667 0.00 0.00 0.00 4.04
3102 4764 6.367374 TGTCCAGGTCATCTTGTTAACATA 57.633 37.500 9.56 1.18 0.00 2.29
3183 4845 0.833287 GCCTTCACTGCTCTATCCCA 59.167 55.000 0.00 0.00 0.00 4.37
3291 4956 8.842358 TTGTAGGAAATAGACTAACCAAAGTG 57.158 34.615 0.00 0.00 0.00 3.16
3461 5126 7.867403 GCACAGAAAGATTCACTGGAAAATAAA 59.133 33.333 0.00 0.00 36.43 1.40
3524 5189 3.692593 CAGCATTCCATTCATCAGTGTCA 59.307 43.478 0.00 0.00 0.00 3.58
3575 5240 7.882791 TCTGAATCATAACCAGCTTTCAGTTTA 59.117 33.333 16.23 0.36 40.41 2.01
3729 5394 3.891366 ACATGCAACCATTAAGGGATAGC 59.109 43.478 14.22 13.30 43.89 2.97
3735 5400 7.823799 AGGATTTTTAACATGCAACCATTAAGG 59.176 33.333 0.00 0.00 45.67 2.69
3843 5508 2.159099 GGCAGACACGATCCTTATGTCA 60.159 50.000 13.49 0.00 44.26 3.58
3877 5542 7.110155 CAGGGTTCAGAATTAGGTAAAAGCTA 58.890 38.462 0.00 0.00 0.00 3.32
3887 5552 4.511826 GCGTATTCCAGGGTTCAGAATTAG 59.488 45.833 0.00 0.00 32.64 1.73
3909 5574 3.166657 CAATCAAACTTAGCAAGCTCGC 58.833 45.455 0.00 0.00 0.00 5.03
4029 5694 9.130661 TGGAATACCAATCATAATTGTCGAATT 57.869 29.630 0.00 0.00 43.91 2.17
4030 5695 8.690203 TGGAATACCAATCATAATTGTCGAAT 57.310 30.769 0.00 0.00 43.91 3.34
4050 5715 2.537633 ACCACATGCCTCAATGGAAT 57.462 45.000 4.88 0.00 38.35 3.01
4138 5803 3.490439 TGATGTGAAGTCAGGCTTTGA 57.510 42.857 0.00 0.00 37.59 2.69
4326 5991 4.324254 GGATTGCGAATATTATCCTGGGGA 60.324 45.833 7.47 0.00 34.91 4.81
4396 6061 2.555757 GGCAATGTATCAGAGGAATGCC 59.444 50.000 0.00 0.00 44.44 4.40
4434 6099 4.192317 GCACCTTACAAGAATAGGTCAGG 58.808 47.826 0.00 0.00 40.24 3.86
4619 6284 7.450074 TGAATCTGTGAATTACCAACTACAGT 58.550 34.615 0.00 0.00 37.42 3.55
4871 6555 3.046374 AGGGTAGACCAAACTTGACACT 58.954 45.455 0.21 0.00 43.89 3.55
4899 6583 0.032615 TCACAAACCAAACAGCCCCT 60.033 50.000 0.00 0.00 0.00 4.79
4900 6584 0.104120 GTCACAAACCAAACAGCCCC 59.896 55.000 0.00 0.00 0.00 5.80
4901 6585 1.111277 AGTCACAAACCAAACAGCCC 58.889 50.000 0.00 0.00 0.00 5.19
4902 6586 3.380320 AGTTAGTCACAAACCAAACAGCC 59.620 43.478 0.00 0.00 30.35 4.85
4903 6587 4.632538 AGTTAGTCACAAACCAAACAGC 57.367 40.909 0.00 0.00 30.35 4.40
4904 6588 6.386654 ACAAAGTTAGTCACAAACCAAACAG 58.613 36.000 0.00 0.00 30.35 3.16
4905 6589 6.016192 TGACAAAGTTAGTCACAAACCAAACA 60.016 34.615 0.00 0.00 40.80 2.83
4906 6590 6.383415 TGACAAAGTTAGTCACAAACCAAAC 58.617 36.000 0.00 0.00 40.80 2.93
4907 6591 6.576662 TGACAAAGTTAGTCACAAACCAAA 57.423 33.333 0.00 0.00 40.80 3.28
4908 6592 6.576662 TTGACAAAGTTAGTCACAAACCAA 57.423 33.333 0.00 0.00 44.95 3.67
4909 6593 6.431543 TCTTTGACAAAGTTAGTCACAAACCA 59.568 34.615 23.78 0.78 44.95 3.67
4910 6594 6.848451 TCTTTGACAAAGTTAGTCACAAACC 58.152 36.000 23.78 0.00 44.95 3.27
4911 6595 8.798153 CAATCTTTGACAAAGTTAGTCACAAAC 58.202 33.333 23.78 0.00 44.95 2.93
4912 6596 7.487829 GCAATCTTTGACAAAGTTAGTCACAAA 59.512 33.333 23.78 4.77 44.95 2.83
4913 6597 6.972328 GCAATCTTTGACAAAGTTAGTCACAA 59.028 34.615 23.78 5.43 44.95 3.33
4914 6598 6.459573 GGCAATCTTTGACAAAGTTAGTCACA 60.460 38.462 23.78 6.08 44.95 3.58
4915 6599 5.915196 GGCAATCTTTGACAAAGTTAGTCAC 59.085 40.000 23.78 10.61 44.95 3.67
4916 6600 6.072112 GGCAATCTTTGACAAAGTTAGTCA 57.928 37.500 23.78 7.39 43.72 3.41
4926 6610 7.682132 ACCTTAGGTGTGGCAATCTTTGACA 62.682 44.000 1.74 0.00 39.88 3.58
4927 6611 3.191371 CCTTAGGTGTGGCAATCTTTGAC 59.809 47.826 0.00 0.00 39.85 3.18
4928 6612 3.181434 ACCTTAGGTGTGGCAATCTTTGA 60.181 43.478 1.74 0.00 32.98 2.69
4929 6613 3.157087 ACCTTAGGTGTGGCAATCTTTG 58.843 45.455 1.74 0.00 32.98 2.77
4930 6614 3.525800 ACCTTAGGTGTGGCAATCTTT 57.474 42.857 1.74 0.00 32.98 2.52
4931 6615 3.525800 AACCTTAGGTGTGGCAATCTT 57.474 42.857 3.99 0.00 35.34 2.40
4932 6616 3.054361 CCTAACCTTAGGTGTGGCAATCT 60.054 47.826 3.99 0.00 44.26 2.40
4933 6617 3.279434 CCTAACCTTAGGTGTGGCAATC 58.721 50.000 3.99 0.00 44.26 2.67
4934 6618 3.366052 CCTAACCTTAGGTGTGGCAAT 57.634 47.619 3.99 0.00 44.26 3.56
4935 6619 2.871096 CCTAACCTTAGGTGTGGCAA 57.129 50.000 3.99 0.00 44.26 4.52
4943 6627 8.176385 GTTGGTCAAACTTGCCTAACCTTAGG 62.176 46.154 6.73 6.73 42.91 2.69
4944 6628 4.394729 TGGTCAAACTTGCCTAACCTTAG 58.605 43.478 0.00 0.00 0.00 2.18
4945 6629 4.440826 TGGTCAAACTTGCCTAACCTTA 57.559 40.909 0.00 0.00 0.00 2.69
4946 6630 3.306472 TGGTCAAACTTGCCTAACCTT 57.694 42.857 0.00 0.00 0.00 3.50
4947 6631 2.956333 GTTGGTCAAACTTGCCTAACCT 59.044 45.455 0.00 0.00 35.75 3.50
4948 6632 3.364889 GTTGGTCAAACTTGCCTAACC 57.635 47.619 5.07 0.00 35.75 2.85
4958 6642 4.196971 ACACTCACCTAAGTTGGTCAAAC 58.803 43.478 0.00 0.00 38.45 2.93
4959 6643 4.497291 ACACTCACCTAAGTTGGTCAAA 57.503 40.909 0.00 0.00 38.45 2.69
4960 6644 4.497291 AACACTCACCTAAGTTGGTCAA 57.503 40.909 0.00 0.00 38.45 3.18
4961 6645 4.196193 CAAACACTCACCTAAGTTGGTCA 58.804 43.478 0.00 0.00 38.45 4.02
4962 6646 3.564225 CCAAACACTCACCTAAGTTGGTC 59.436 47.826 0.00 0.00 38.45 4.02
4963 6647 3.053917 ACCAAACACTCACCTAAGTTGGT 60.054 43.478 0.00 0.00 41.77 3.67
4964 6648 3.551846 ACCAAACACTCACCTAAGTTGG 58.448 45.455 0.00 0.00 0.00 3.77
4965 6649 4.638421 TGAACCAAACACTCACCTAAGTTG 59.362 41.667 0.00 0.00 0.00 3.16
4966 6650 4.850680 TGAACCAAACACTCACCTAAGTT 58.149 39.130 0.00 0.00 0.00 2.66
4967 6651 4.497291 TGAACCAAACACTCACCTAAGT 57.503 40.909 0.00 0.00 0.00 2.24
4968 6652 4.261197 GCTTGAACCAAACACTCACCTAAG 60.261 45.833 0.00 0.00 0.00 2.18
4969 6653 3.630312 GCTTGAACCAAACACTCACCTAA 59.370 43.478 0.00 0.00 0.00 2.69
4970 6654 3.211045 GCTTGAACCAAACACTCACCTA 58.789 45.455 0.00 0.00 0.00 3.08
4971 6655 2.024414 GCTTGAACCAAACACTCACCT 58.976 47.619 0.00 0.00 0.00 4.00
4972 6656 1.067060 GGCTTGAACCAAACACTCACC 59.933 52.381 0.00 0.00 0.00 4.02
4973 6657 1.748493 TGGCTTGAACCAAACACTCAC 59.252 47.619 0.00 0.00 36.55 3.51
4974 6658 1.748493 GTGGCTTGAACCAAACACTCA 59.252 47.619 0.00 0.00 42.70 3.41
4975 6659 1.748493 TGTGGCTTGAACCAAACACTC 59.252 47.619 12.25 0.00 42.70 3.51
4976 6660 1.476488 GTGTGGCTTGAACCAAACACT 59.524 47.619 0.00 0.00 45.87 3.55
4977 6661 1.921243 GTGTGGCTTGAACCAAACAC 58.079 50.000 0.00 0.00 45.87 3.32
4979 6663 1.111277 AGGTGTGGCTTGAACCAAAC 58.889 50.000 0.00 0.00 45.86 2.93
4980 6664 1.859302 AAGGTGTGGCTTGAACCAAA 58.141 45.000 0.00 0.00 42.70 3.28
4981 6665 2.582052 CTAAGGTGTGGCTTGAACCAA 58.418 47.619 0.00 0.00 42.70 3.67
4982 6666 1.202879 CCTAAGGTGTGGCTTGAACCA 60.203 52.381 0.00 0.00 36.37 3.67
4983 6667 1.534729 CCTAAGGTGTGGCTTGAACC 58.465 55.000 0.00 0.00 0.00 3.62
4984 6668 0.881796 GCCTAAGGTGTGGCTTGAAC 59.118 55.000 0.00 0.00 45.26 3.18
4985 6669 3.339547 GCCTAAGGTGTGGCTTGAA 57.660 52.632 0.00 0.00 45.26 2.69
4991 6675 1.074775 TGGCTTGCCTAAGGTGTGG 59.925 57.895 13.18 0.00 34.40 4.17
4992 6676 0.537143 TGTGGCTTGCCTAAGGTGTG 60.537 55.000 13.18 0.00 34.40 3.82
4993 6677 0.537371 GTGTGGCTTGCCTAAGGTGT 60.537 55.000 13.18 0.00 34.40 4.16
4994 6678 0.250901 AGTGTGGCTTGCCTAAGGTG 60.251 55.000 13.18 0.00 34.40 4.00
4995 6679 0.478507 AAGTGTGGCTTGCCTAAGGT 59.521 50.000 13.18 0.00 35.80 3.50
4996 6680 0.883833 CAAGTGTGGCTTGCCTAAGG 59.116 55.000 13.18 0.00 46.68 2.69
5004 6688 0.755327 GTGGGGTTCAAGTGTGGCTT 60.755 55.000 0.00 0.00 38.08 4.35
5005 6689 1.152756 GTGGGGTTCAAGTGTGGCT 60.153 57.895 0.00 0.00 0.00 4.75
5006 6690 0.827507 ATGTGGGGTTCAAGTGTGGC 60.828 55.000 0.00 0.00 0.00 5.01
5007 6691 0.961019 CATGTGGGGTTCAAGTGTGG 59.039 55.000 0.00 0.00 0.00 4.17
5008 6692 0.961019 CCATGTGGGGTTCAAGTGTG 59.039 55.000 0.00 0.00 0.00 3.82
5009 6693 0.827507 GCCATGTGGGGTTCAAGTGT 60.828 55.000 0.54 0.00 37.04 3.55
5010 6694 0.827089 TGCCATGTGGGGTTCAAGTG 60.827 55.000 0.54 0.00 37.04 3.16
5011 6695 0.114954 ATGCCATGTGGGGTTCAAGT 59.885 50.000 0.54 0.00 37.04 3.16
5012 6696 1.750778 GTATGCCATGTGGGGTTCAAG 59.249 52.381 0.54 0.00 37.04 3.02
5013 6697 1.076187 TGTATGCCATGTGGGGTTCAA 59.924 47.619 0.54 0.00 37.04 2.69
5014 6698 0.701147 TGTATGCCATGTGGGGTTCA 59.299 50.000 0.54 0.00 37.04 3.18
5015 6699 1.102978 GTGTATGCCATGTGGGGTTC 58.897 55.000 0.54 0.00 37.04 3.62
5016 6700 0.407528 TGTGTATGCCATGTGGGGTT 59.592 50.000 0.54 0.00 37.04 4.11
5017 6701 0.323360 GTGTGTATGCCATGTGGGGT 60.323 55.000 0.54 0.00 37.04 4.95
5018 6702 0.323269 TGTGTGTATGCCATGTGGGG 60.323 55.000 0.54 0.00 37.04 4.96
5019 6703 1.543607 TTGTGTGTATGCCATGTGGG 58.456 50.000 0.54 0.00 40.85 4.61
5020 6704 3.657015 TTTTGTGTGTATGCCATGTGG 57.343 42.857 0.00 0.00 38.53 4.17
5021 6705 4.445052 CACTTTTTGTGTGTATGCCATGTG 59.555 41.667 0.00 0.00 41.53 3.21
5022 6706 4.619973 CACTTTTTGTGTGTATGCCATGT 58.380 39.130 0.00 0.00 41.53 3.21
5033 6717 9.629203 AAAGGAATCTTGCCACACTTTTTGTGT 62.629 37.037 3.85 0.00 45.68 3.72
5034 6718 7.346537 AAAGGAATCTTGCCACACTTTTTGTG 61.347 38.462 0.00 0.00 43.15 3.33
5035 6719 3.706086 AGGAATCTTGCCACACTTTTTGT 59.294 39.130 0.00 0.00 39.97 2.83
5036 6720 4.326504 AGGAATCTTGCCACACTTTTTG 57.673 40.909 0.00 0.00 0.00 2.44
5037 6721 5.357742 AAAGGAATCTTGCCACACTTTTT 57.642 34.783 0.00 0.00 32.75 1.94
5038 6722 5.011023 CCTAAAGGAATCTTGCCACACTTTT 59.989 40.000 0.00 0.00 37.39 2.27
5039 6723 4.524328 CCTAAAGGAATCTTGCCACACTTT 59.476 41.667 0.00 0.00 37.39 2.66
5040 6724 4.082125 CCTAAAGGAATCTTGCCACACTT 58.918 43.478 0.00 0.00 37.39 3.16
5041 6725 3.690460 CCTAAAGGAATCTTGCCACACT 58.310 45.455 0.00 0.00 37.39 3.55
5042 6726 2.164422 GCCTAAAGGAATCTTGCCACAC 59.836 50.000 0.00 0.00 37.39 3.82
5043 6727 2.041620 AGCCTAAAGGAATCTTGCCACA 59.958 45.455 0.00 0.00 37.39 4.17
5044 6728 2.728007 AGCCTAAAGGAATCTTGCCAC 58.272 47.619 0.00 0.00 37.39 5.01
5045 6729 3.091545 CAAGCCTAAAGGAATCTTGCCA 58.908 45.455 0.00 0.00 37.39 4.92
5046 6730 3.092301 ACAAGCCTAAAGGAATCTTGCC 58.908 45.455 12.23 0.00 36.73 4.52
5047 6731 3.758554 TGACAAGCCTAAAGGAATCTTGC 59.241 43.478 12.23 7.83 36.73 4.01
5048 6732 5.474876 AGTTGACAAGCCTAAAGGAATCTTG 59.525 40.000 11.23 11.23 38.19 3.02
5049 6733 5.635120 AGTTGACAAGCCTAAAGGAATCTT 58.365 37.500 0.00 0.00 37.39 2.40
5050 6734 5.248380 AGTTGACAAGCCTAAAGGAATCT 57.752 39.130 0.00 0.00 37.39 2.40
5051 6735 5.241728 ACAAGTTGACAAGCCTAAAGGAATC 59.758 40.000 10.54 0.00 37.39 2.52
5052 6736 5.010012 CACAAGTTGACAAGCCTAAAGGAAT 59.990 40.000 10.54 0.00 37.39 3.01
5053 6737 4.338118 CACAAGTTGACAAGCCTAAAGGAA 59.662 41.667 10.54 0.00 37.39 3.36
5054 6738 3.882888 CACAAGTTGACAAGCCTAAAGGA 59.117 43.478 10.54 0.00 37.39 3.36
5055 6739 3.004734 CCACAAGTTGACAAGCCTAAAGG 59.995 47.826 10.54 0.00 38.53 3.11
5056 6740 3.550842 GCCACAAGTTGACAAGCCTAAAG 60.551 47.826 10.54 0.00 0.00 1.85
5057 6741 2.360801 GCCACAAGTTGACAAGCCTAAA 59.639 45.455 10.54 0.00 0.00 1.85
5058 6742 1.953686 GCCACAAGTTGACAAGCCTAA 59.046 47.619 10.54 0.00 0.00 2.69
5059 6743 1.142870 AGCCACAAGTTGACAAGCCTA 59.857 47.619 10.54 0.00 0.00 3.93
5060 6744 0.106519 AGCCACAAGTTGACAAGCCT 60.107 50.000 10.54 0.00 0.00 4.58
5061 6745 0.312102 GAGCCACAAGTTGACAAGCC 59.688 55.000 10.54 0.00 0.00 4.35
5062 6746 1.312815 AGAGCCACAAGTTGACAAGC 58.687 50.000 10.54 6.48 0.00 4.01
5063 6747 5.695851 AATAAGAGCCACAAGTTGACAAG 57.304 39.130 10.54 0.00 0.00 3.16
5064 6748 6.096141 TCAAAATAAGAGCCACAAGTTGACAA 59.904 34.615 10.54 0.00 0.00 3.18
5065 6749 5.592282 TCAAAATAAGAGCCACAAGTTGACA 59.408 36.000 10.54 0.00 0.00 3.58
5066 6750 6.072112 TCAAAATAAGAGCCACAAGTTGAC 57.928 37.500 10.54 0.00 0.00 3.18
5067 6751 6.489700 TCATCAAAATAAGAGCCACAAGTTGA 59.510 34.615 10.54 0.00 0.00 3.18
5068 6752 6.680810 TCATCAAAATAAGAGCCACAAGTTG 58.319 36.000 0.00 0.00 0.00 3.16
5069 6753 6.899393 TCATCAAAATAAGAGCCACAAGTT 57.101 33.333 0.00 0.00 0.00 2.66
5070 6754 6.491403 AGTTCATCAAAATAAGAGCCACAAGT 59.509 34.615 0.00 0.00 0.00 3.16
5071 6755 6.917533 AGTTCATCAAAATAAGAGCCACAAG 58.082 36.000 0.00 0.00 0.00 3.16
5072 6756 6.899393 AGTTCATCAAAATAAGAGCCACAA 57.101 33.333 0.00 0.00 0.00 3.33
5073 6757 7.994425 TTAGTTCATCAAAATAAGAGCCACA 57.006 32.000 0.00 0.00 0.00 4.17
5074 6758 8.897752 AGATTAGTTCATCAAAATAAGAGCCAC 58.102 33.333 0.00 0.00 31.53 5.01
5075 6759 9.466497 AAGATTAGTTCATCAAAATAAGAGCCA 57.534 29.630 0.00 0.00 31.53 4.75
5121 6805 9.712305 GACTAGCATTGTCATACTTTACCATAT 57.288 33.333 0.00 0.00 34.80 1.78
5122 6806 8.148351 GGACTAGCATTGTCATACTTTACCATA 58.852 37.037 0.00 0.00 36.26 2.74
5123 6807 6.992715 GGACTAGCATTGTCATACTTTACCAT 59.007 38.462 0.00 0.00 36.26 3.55
5124 6808 6.156256 AGGACTAGCATTGTCATACTTTACCA 59.844 38.462 0.00 0.00 36.26 3.25
5125 6809 6.583562 AGGACTAGCATTGTCATACTTTACC 58.416 40.000 0.00 0.00 36.26 2.85
5126 6810 9.595823 TTTAGGACTAGCATTGTCATACTTTAC 57.404 33.333 0.00 0.00 36.26 2.01
5128 6812 9.686683 ATTTTAGGACTAGCATTGTCATACTTT 57.313 29.630 0.00 0.00 36.26 2.66
5129 6813 9.331282 GATTTTAGGACTAGCATTGTCATACTT 57.669 33.333 0.00 0.00 36.26 2.24
5130 6814 8.486210 TGATTTTAGGACTAGCATTGTCATACT 58.514 33.333 0.00 0.00 36.26 2.12
5131 6815 8.662781 TGATTTTAGGACTAGCATTGTCATAC 57.337 34.615 0.00 0.00 36.26 2.39
5132 6816 9.679661 TTTGATTTTAGGACTAGCATTGTCATA 57.320 29.630 0.00 1.30 36.26 2.15
5133 6817 8.462016 GTTTGATTTTAGGACTAGCATTGTCAT 58.538 33.333 0.00 2.13 36.26 3.06
5134 6818 7.446931 TGTTTGATTTTAGGACTAGCATTGTCA 59.553 33.333 0.00 0.00 36.26 3.58
5135 6819 7.816640 TGTTTGATTTTAGGACTAGCATTGTC 58.183 34.615 0.00 0.00 0.00 3.18
5136 6820 7.575720 GCTGTTTGATTTTAGGACTAGCATTGT 60.576 37.037 0.00 0.00 0.00 2.71
5137 6821 6.749118 GCTGTTTGATTTTAGGACTAGCATTG 59.251 38.462 0.00 0.00 0.00 2.82
5138 6822 6.127619 GGCTGTTTGATTTTAGGACTAGCATT 60.128 38.462 0.00 0.00 0.00 3.56
5139 6823 5.358160 GGCTGTTTGATTTTAGGACTAGCAT 59.642 40.000 0.00 0.00 0.00 3.79
5140 6824 4.700213 GGCTGTTTGATTTTAGGACTAGCA 59.300 41.667 0.00 0.00 0.00 3.49
5141 6825 4.944317 AGGCTGTTTGATTTTAGGACTAGC 59.056 41.667 0.00 0.00 0.00 3.42
5142 6826 6.410540 AGAGGCTGTTTGATTTTAGGACTAG 58.589 40.000 0.00 0.00 0.00 2.57
5143 6827 6.374417 AGAGGCTGTTTGATTTTAGGACTA 57.626 37.500 0.00 0.00 0.00 2.59
5144 6828 5.248380 AGAGGCTGTTTGATTTTAGGACT 57.752 39.130 0.00 0.00 0.00 3.85
5145 6829 5.938125 TGTAGAGGCTGTTTGATTTTAGGAC 59.062 40.000 0.00 0.00 0.00 3.85
5146 6830 6.121776 TGTAGAGGCTGTTTGATTTTAGGA 57.878 37.500 0.00 0.00 0.00 2.94
5147 6831 7.396540 AATGTAGAGGCTGTTTGATTTTAGG 57.603 36.000 0.00 0.00 0.00 2.69
5149 6833 9.905713 AGATAATGTAGAGGCTGTTTGATTTTA 57.094 29.630 0.00 0.00 0.00 1.52
5150 6834 8.814038 AGATAATGTAGAGGCTGTTTGATTTT 57.186 30.769 0.00 0.00 0.00 1.82
5152 6836 9.499479 CATAGATAATGTAGAGGCTGTTTGATT 57.501 33.333 0.00 0.00 0.00 2.57
5153 6837 7.605691 GCATAGATAATGTAGAGGCTGTTTGAT 59.394 37.037 0.00 0.00 37.93 2.57
5154 6838 6.931281 GCATAGATAATGTAGAGGCTGTTTGA 59.069 38.462 0.00 0.00 37.93 2.69
5155 6839 6.128715 CGCATAGATAATGTAGAGGCTGTTTG 60.129 42.308 0.00 0.00 37.93 2.93
5156 6840 5.928839 CGCATAGATAATGTAGAGGCTGTTT 59.071 40.000 0.00 0.00 37.93 2.83
5157 6841 5.473931 CGCATAGATAATGTAGAGGCTGTT 58.526 41.667 0.00 0.00 37.93 3.16
5158 6842 4.619394 GCGCATAGATAATGTAGAGGCTGT 60.619 45.833 0.30 0.00 37.93 4.40
5159 6843 3.862267 GCGCATAGATAATGTAGAGGCTG 59.138 47.826 0.30 0.00 37.93 4.85
5160 6844 3.511540 TGCGCATAGATAATGTAGAGGCT 59.488 43.478 5.66 0.00 37.93 4.58
5161 6845 3.849911 TGCGCATAGATAATGTAGAGGC 58.150 45.455 5.66 0.00 37.93 4.70
5162 6846 4.428209 CCTGCGCATAGATAATGTAGAGG 58.572 47.826 12.24 0.00 37.93 3.69
5163 6847 3.862267 GCCTGCGCATAGATAATGTAGAG 59.138 47.826 12.24 0.00 37.93 2.43
5164 6848 3.673323 CGCCTGCGCATAGATAATGTAGA 60.673 47.826 12.24 0.00 37.93 2.59
5165 6849 2.600420 CGCCTGCGCATAGATAATGTAG 59.400 50.000 12.24 0.00 37.93 2.74
5182 6866 1.968493 TGTAGAACTCCTGAAACGCCT 59.032 47.619 0.00 0.00 0.00 5.52
5217 6907 5.106157 CCAACATTATTGTCTGGGACTGTTC 60.106 44.000 9.36 0.00 34.06 3.18
5221 6911 4.042809 TGTCCAACATTATTGTCTGGGACT 59.957 41.667 22.83 0.00 44.10 3.85
5222 6912 4.331968 TGTCCAACATTATTGTCTGGGAC 58.668 43.478 19.23 19.23 44.07 4.46
5251 6941 5.219633 CCGAAACAAAACCCTAATGAGTTG 58.780 41.667 0.00 0.00 0.00 3.16
5252 6942 4.891168 ACCGAAACAAAACCCTAATGAGTT 59.109 37.500 0.00 0.00 0.00 3.01
5253 6943 4.466827 ACCGAAACAAAACCCTAATGAGT 58.533 39.130 0.00 0.00 0.00 3.41
5254 6944 5.470777 TGTACCGAAACAAAACCCTAATGAG 59.529 40.000 0.00 0.00 0.00 2.90
5259 6980 3.882288 GGTTGTACCGAAACAAAACCCTA 59.118 43.478 4.41 0.00 40.85 3.53
5279 7000 9.620259 TTTAAATTCATGCAAACTTTTAAGGGT 57.380 25.926 0.00 0.00 0.00 4.34
5327 7049 5.300286 GGTTTGATCTGCAAGCTAATATGGT 59.700 40.000 0.00 0.00 37.78 3.55
5375 7097 2.807676 AGGTGCCCCTACAATCAAAAG 58.192 47.619 0.00 0.00 40.19 2.27
5385 7108 3.130734 AGATGTTAGAAGGTGCCCCTA 57.869 47.619 0.00 0.00 41.56 3.53
5400 7123 7.497595 TCGGTGCAGATTAAAGTTATAGATGT 58.502 34.615 0.00 0.00 0.00 3.06
5401 7124 7.946655 TCGGTGCAGATTAAAGTTATAGATG 57.053 36.000 0.00 0.00 0.00 2.90
5402 7125 8.958119 TTTCGGTGCAGATTAAAGTTATAGAT 57.042 30.769 0.00 0.00 0.00 1.98
5403 7126 8.958119 ATTTCGGTGCAGATTAAAGTTATAGA 57.042 30.769 0.00 0.00 0.00 1.98
5409 7132 3.374058 CGGATTTCGGTGCAGATTAAAGT 59.626 43.478 0.00 0.00 34.75 2.66
5423 7146 4.565564 CCCTAGAACAGTTTACGGATTTCG 59.434 45.833 0.00 0.00 45.88 3.46
5432 7155 4.021192 CGTTACACCCCCTAGAACAGTTTA 60.021 45.833 0.00 0.00 0.00 2.01
5438 7161 1.560505 TCCGTTACACCCCCTAGAAC 58.439 55.000 0.00 0.00 0.00 3.01
5455 7178 4.771590 TGATGATGTGAACTTTGCTTCC 57.228 40.909 0.00 0.00 0.00 3.46
5469 7192 5.230323 AGGACTGATGAGGAATGATGATG 57.770 43.478 0.00 0.00 0.00 3.07
5477 7200 6.409704 CACATAAGAAAGGACTGATGAGGAA 58.590 40.000 0.00 0.00 34.01 3.36
5481 7204 4.517285 GCCACATAAGAAAGGACTGATGA 58.483 43.478 0.00 0.00 34.01 2.92
5482 7205 3.629398 GGCCACATAAGAAAGGACTGATG 59.371 47.826 0.00 0.00 35.48 3.07
5487 7210 2.790433 TGTGGCCACATAAGAAAGGAC 58.210 47.619 34.74 4.13 36.21 3.85
5509 7233 2.732366 AGTAGATATGCGCACGTTGAG 58.268 47.619 14.90 0.00 0.00 3.02
5515 7239 7.639162 AATTAAGTGTAGTAGATATGCGCAC 57.361 36.000 14.90 0.00 0.00 5.34
5527 7251 9.204570 GCGATATGTCCAATAATTAAGTGTAGT 57.795 33.333 0.00 0.00 0.00 2.73
5538 7263 7.994425 AAATGGTATGCGATATGTCCAATAA 57.006 32.000 0.00 0.00 0.00 1.40
5540 7265 6.489700 TGAAAATGGTATGCGATATGTCCAAT 59.510 34.615 0.00 0.00 0.00 3.16
5551 7276 5.527511 TTGCAAAATGAAAATGGTATGCG 57.472 34.783 0.00 0.00 35.40 4.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.