Multiple sequence alignment - TraesCS6A01G217500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6A01G217500 | chr6A | 100.000 | 5344 | 0 | 0 | 1 | 5344 | 400119258 | 400124601 | 0.000000e+00 | 9869.0 |
1 | TraesCS6A01G217500 | chr6D | 97.359 | 2007 | 44 | 1 | 3347 | 5344 | 277671570 | 277673576 | 0.000000e+00 | 3404.0 |
2 | TraesCS6A01G217500 | chr6D | 96.149 | 1714 | 52 | 2 | 1634 | 3347 | 277669805 | 277671504 | 0.000000e+00 | 2787.0 |
3 | TraesCS6A01G217500 | chr6D | 92.618 | 1436 | 68 | 16 | 1 | 1430 | 277668392 | 277669795 | 0.000000e+00 | 2030.0 |
4 | TraesCS6A01G217500 | chr6D | 87.607 | 234 | 27 | 2 | 3109 | 3341 | 2867063 | 2867295 | 2.450000e-68 | 270.0 |
5 | TraesCS6A01G217500 | chr6D | 84.211 | 152 | 18 | 5 | 1422 | 1569 | 363384205 | 363384354 | 5.580000e-30 | 143.0 |
6 | TraesCS6A01G217500 | chr6B | 96.605 | 1826 | 47 | 4 | 3520 | 5344 | 439401655 | 439403466 | 0.000000e+00 | 3014.0 |
7 | TraesCS6A01G217500 | chr6B | 95.727 | 1334 | 41 | 4 | 1634 | 2966 | 439398392 | 439399710 | 0.000000e+00 | 2134.0 |
8 | TraesCS6A01G217500 | chr6B | 93.056 | 720 | 36 | 8 | 1 | 718 | 439396986 | 439397693 | 0.000000e+00 | 1040.0 |
9 | TraesCS6A01G217500 | chr6B | 90.774 | 607 | 32 | 8 | 833 | 1429 | 439397794 | 439398386 | 0.000000e+00 | 789.0 |
10 | TraesCS6A01G217500 | chr6B | 96.684 | 392 | 13 | 0 | 2956 | 3347 | 439399886 | 439400277 | 0.000000e+00 | 652.0 |
11 | TraesCS6A01G217500 | chr6B | 93.956 | 182 | 2 | 1 | 3347 | 3519 | 439400309 | 439400490 | 3.170000e-67 | 267.0 |
12 | TraesCS6A01G217500 | chr4D | 89.496 | 238 | 23 | 2 | 3110 | 3347 | 233099226 | 233098991 | 3.130000e-77 | 300.0 |
13 | TraesCS6A01G217500 | chrUn | 90.625 | 224 | 21 | 0 | 3110 | 3333 | 53802989 | 53802766 | 1.130000e-76 | 298.0 |
14 | TraesCS6A01G217500 | chr1A | 90.583 | 223 | 21 | 0 | 3110 | 3332 | 181770853 | 181770631 | 4.050000e-76 | 296.0 |
15 | TraesCS6A01G217500 | chr1A | 93.636 | 110 | 3 | 3 | 1424 | 1530 | 247338854 | 247338962 | 1.540000e-35 | 161.0 |
16 | TraesCS6A01G217500 | chr1A | 86.301 | 146 | 16 | 4 | 1428 | 1569 | 409855022 | 409855167 | 7.170000e-34 | 156.0 |
17 | TraesCS6A01G217500 | chr1D | 90.698 | 215 | 20 | 0 | 3115 | 3329 | 178459244 | 178459030 | 2.440000e-73 | 287.0 |
18 | TraesCS6A01G217500 | chr1D | 92.920 | 113 | 4 | 3 | 1423 | 1533 | 450216789 | 450216679 | 1.540000e-35 | 161.0 |
19 | TraesCS6A01G217500 | chr5D | 87.137 | 241 | 28 | 1 | 3110 | 3347 | 281028538 | 281028778 | 2.450000e-68 | 270.0 |
20 | TraesCS6A01G217500 | chr5D | 90.184 | 163 | 13 | 3 | 401 | 563 | 546657083 | 546657242 | 5.420000e-50 | 209.0 |
21 | TraesCS6A01G217500 | chr5D | 94.495 | 109 | 3 | 2 | 1424 | 1530 | 151671544 | 151671651 | 1.190000e-36 | 165.0 |
22 | TraesCS6A01G217500 | chr5D | 79.412 | 170 | 12 | 7 | 1428 | 1575 | 429977845 | 429978013 | 1.220000e-16 | 99.0 |
23 | TraesCS6A01G217500 | chr3D | 87.083 | 240 | 25 | 3 | 3109 | 3347 | 239612381 | 239612615 | 3.170000e-67 | 267.0 |
24 | TraesCS6A01G217500 | chr4A | 91.946 | 149 | 12 | 0 | 404 | 552 | 622281996 | 622281848 | 5.420000e-50 | 209.0 |
25 | TraesCS6A01G217500 | chr5B | 91.275 | 149 | 13 | 0 | 401 | 549 | 689858026 | 689858174 | 2.520000e-48 | 204.0 |
26 | TraesCS6A01G217500 | chr3B | 92.414 | 145 | 8 | 2 | 1428 | 1570 | 752682931 | 752683074 | 2.520000e-48 | 204.0 |
27 | TraesCS6A01G217500 | chr3B | 84.000 | 150 | 22 | 2 | 1426 | 1574 | 815372927 | 815372779 | 5.580000e-30 | 143.0 |
28 | TraesCS6A01G217500 | chr7D | 88.356 | 146 | 11 | 5 | 1429 | 1569 | 600508673 | 600508529 | 2.560000e-38 | 171.0 |
29 | TraesCS6A01G217500 | chr2B | 87.075 | 147 | 14 | 4 | 1428 | 1569 | 757065031 | 757065177 | 1.540000e-35 | 161.0 |
30 | TraesCS6A01G217500 | chr2B | 79.096 | 177 | 10 | 11 | 1428 | 1579 | 26101921 | 26101747 | 4.410000e-16 | 97.1 |
31 | TraesCS6A01G217500 | chr7B | 77.841 | 176 | 15 | 8 | 1428 | 1581 | 24997680 | 24997507 | 2.650000e-13 | 87.9 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6A01G217500 | chr6A | 400119258 | 400124601 | 5343 | False | 9869.000000 | 9869 | 100.000000 | 1 | 5344 | 1 | chr6A.!!$F1 | 5343 |
1 | TraesCS6A01G217500 | chr6D | 277668392 | 277673576 | 5184 | False | 2740.333333 | 3404 | 95.375333 | 1 | 5344 | 3 | chr6D.!!$F3 | 5343 |
2 | TraesCS6A01G217500 | chr6B | 439396986 | 439403466 | 6480 | False | 1316.000000 | 3014 | 94.467000 | 1 | 5344 | 6 | chr6B.!!$F1 | 5343 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
775 | 778 | 0.034477 | GATTGTCCCCACGGTCCAAT | 60.034 | 55.0 | 0.0 | 0.0 | 35.71 | 3.16 | F |
815 | 818 | 0.035820 | GGTCCAAATAGACGTGGCCA | 60.036 | 55.0 | 0.0 | 0.0 | 37.66 | 5.36 | F |
2369 | 2422 | 0.332632 | CCCAGGATGAAAGGAAGGCA | 59.667 | 55.0 | 0.0 | 0.0 | 39.69 | 4.75 | F |
2817 | 2870 | 0.394938 | TCAACGGCTGCAACTCCTTA | 59.605 | 50.0 | 0.5 | 0.0 | 0.00 | 2.69 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1619 | 1671 | 0.034756 | TTCCAGTCACATGGTCGTGG | 59.965 | 55.000 | 0.00 | 0.00 | 41.43 | 4.94 | R |
2453 | 2506 | 0.953727 | TGCATTGACTTGTGTGCTCC | 59.046 | 50.000 | 0.00 | 0.00 | 38.37 | 4.70 | R |
3366 | 3671 | 0.326264 | ACTTGGGTGGAGCTCATGAC | 59.674 | 55.000 | 17.19 | 8.57 | 0.00 | 3.06 | R |
4621 | 6100 | 1.619827 | CAAGATTTTGGAGGCTGCCAA | 59.380 | 47.619 | 22.65 | 12.50 | 45.77 | 4.52 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
68 | 69 | 1.745141 | GCAGGTAGCCCAGACAATCAG | 60.745 | 57.143 | 0.00 | 0.00 | 37.23 | 2.90 |
73 | 74 | 3.307762 | GGTAGCCCAGACAATCAGAAGTT | 60.308 | 47.826 | 0.00 | 0.00 | 0.00 | 2.66 |
94 | 95 | 5.604650 | AGTTCCTCCAATCTATTCTACCCTG | 59.395 | 44.000 | 0.00 | 0.00 | 0.00 | 4.45 |
133 | 134 | 6.094881 | ACTCAAAACTTCTTCGATTCAAACCA | 59.905 | 34.615 | 0.00 | 0.00 | 0.00 | 3.67 |
234 | 235 | 4.320421 | CGCACAAAATTGAGATGGAACTCA | 60.320 | 41.667 | 0.00 | 0.00 | 43.83 | 3.41 |
280 | 281 | 3.514777 | CAACGAGTGCAGCTTAGGA | 57.485 | 52.632 | 0.00 | 0.00 | 0.00 | 2.94 |
312 | 313 | 2.290367 | TGTCCATCTTCTGCAAAACACG | 59.710 | 45.455 | 0.00 | 0.00 | 0.00 | 4.49 |
368 | 371 | 4.181578 | CGCCTAATCCCGATCGAAATTAT | 58.818 | 43.478 | 18.66 | 0.00 | 0.00 | 1.28 |
378 | 381 | 4.449068 | CCGATCGAAATTATAGCAGCAGTT | 59.551 | 41.667 | 18.66 | 0.00 | 0.00 | 3.16 |
381 | 384 | 5.484173 | TCGAAATTATAGCAGCAGTTTGG | 57.516 | 39.130 | 0.00 | 0.00 | 0.00 | 3.28 |
525 | 528 | 4.783621 | GCGCCCATGAGCTGGTCA | 62.784 | 66.667 | 12.41 | 12.41 | 44.30 | 4.02 |
606 | 609 | 2.609921 | GTTCCGGGAGAAGGGGGT | 60.610 | 66.667 | 0.00 | 0.00 | 34.29 | 4.95 |
611 | 614 | 2.454941 | GGGAGAAGGGGGTGGAGA | 59.545 | 66.667 | 0.00 | 0.00 | 0.00 | 3.71 |
671 | 674 | 0.402121 | GAAGGAAGCTGGAACCTGGT | 59.598 | 55.000 | 0.00 | 0.00 | 34.03 | 4.00 |
763 | 766 | 2.667137 | GATCCGATCGACAGATTGTCC | 58.333 | 52.381 | 18.66 | 0.00 | 44.20 | 4.02 |
764 | 767 | 0.744874 | TCCGATCGACAGATTGTCCC | 59.255 | 55.000 | 18.66 | 0.00 | 44.20 | 4.46 |
765 | 768 | 0.249489 | CCGATCGACAGATTGTCCCC | 60.249 | 60.000 | 18.66 | 0.00 | 44.20 | 4.81 |
766 | 769 | 0.459899 | CGATCGACAGATTGTCCCCA | 59.540 | 55.000 | 10.26 | 0.00 | 44.20 | 4.96 |
767 | 770 | 1.802880 | CGATCGACAGATTGTCCCCAC | 60.803 | 57.143 | 10.26 | 0.00 | 44.20 | 4.61 |
768 | 771 | 0.175760 | ATCGACAGATTGTCCCCACG | 59.824 | 55.000 | 3.81 | 0.00 | 44.20 | 4.94 |
769 | 772 | 1.447838 | CGACAGATTGTCCCCACGG | 60.448 | 63.158 | 3.81 | 0.00 | 44.20 | 4.94 |
770 | 773 | 1.677552 | GACAGATTGTCCCCACGGT | 59.322 | 57.895 | 0.00 | 0.00 | 41.37 | 4.83 |
771 | 774 | 0.391263 | GACAGATTGTCCCCACGGTC | 60.391 | 60.000 | 0.00 | 0.00 | 41.37 | 4.79 |
772 | 775 | 1.078426 | CAGATTGTCCCCACGGTCC | 60.078 | 63.158 | 0.00 | 0.00 | 0.00 | 4.46 |
773 | 776 | 1.537889 | AGATTGTCCCCACGGTCCA | 60.538 | 57.895 | 0.00 | 0.00 | 0.00 | 4.02 |
774 | 777 | 1.131303 | AGATTGTCCCCACGGTCCAA | 61.131 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
775 | 778 | 0.034477 | GATTGTCCCCACGGTCCAAT | 60.034 | 55.000 | 0.00 | 0.00 | 35.71 | 3.16 |
776 | 779 | 0.407918 | ATTGTCCCCACGGTCCAATT | 59.592 | 50.000 | 0.00 | 0.00 | 31.81 | 2.32 |
777 | 780 | 0.186386 | TTGTCCCCACGGTCCAATTT | 59.814 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
778 | 781 | 0.186386 | TGTCCCCACGGTCCAATTTT | 59.814 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
779 | 782 | 1.334160 | GTCCCCACGGTCCAATTTTT | 58.666 | 50.000 | 0.00 | 0.00 | 0.00 | 1.94 |
815 | 818 | 0.035820 | GGTCCAAATAGACGTGGCCA | 60.036 | 55.000 | 0.00 | 0.00 | 37.66 | 5.36 |
865 | 910 | 2.997897 | GGGCTCACGGGACAGAGT | 60.998 | 66.667 | 0.00 | 0.00 | 33.46 | 3.24 |
889 | 934 | 4.440829 | TCCCCAATTGCTCCCGGC | 62.441 | 66.667 | 0.00 | 0.00 | 42.22 | 6.13 |
979 | 1025 | 4.069232 | CTGCAGTCTTCCCGCCGA | 62.069 | 66.667 | 5.25 | 0.00 | 0.00 | 5.54 |
981 | 1027 | 2.125106 | GCAGTCTTCCCGCCGATT | 60.125 | 61.111 | 0.00 | 0.00 | 0.00 | 3.34 |
1001 | 1047 | 5.567623 | CGATTGTTTCCCTATCTCCATCGAT | 60.568 | 44.000 | 0.00 | 0.00 | 0.00 | 3.59 |
1056 | 1107 | 2.171448 | CTCTGATTTCCGGTGGATCCTT | 59.829 | 50.000 | 14.23 | 0.00 | 0.00 | 3.36 |
1231 | 1283 | 6.412214 | TGAGTGATGATCATTGACTCAACAT | 58.588 | 36.000 | 30.64 | 10.81 | 37.51 | 2.71 |
1249 | 1301 | 4.927978 | ACATTTTGTCCATTCGGTTTGA | 57.072 | 36.364 | 0.00 | 0.00 | 0.00 | 2.69 |
1252 | 1304 | 6.287525 | ACATTTTGTCCATTCGGTTTGATTT | 58.712 | 32.000 | 0.00 | 0.00 | 0.00 | 2.17 |
1281 | 1333 | 6.250104 | CGTAGTACTGTAGTTGGAATTTCGTC | 59.750 | 42.308 | 5.39 | 0.00 | 0.00 | 4.20 |
1320 | 1372 | 5.789574 | AGGATTCACACCTATACCCAAAA | 57.210 | 39.130 | 0.00 | 0.00 | 35.84 | 2.44 |
1361 | 1413 | 2.168728 | GGTGTGGGAGTTAGATGAGACC | 59.831 | 54.545 | 0.00 | 0.00 | 0.00 | 3.85 |
1403 | 1455 | 0.413832 | AGACCTAGCCACTCCCAAGA | 59.586 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1432 | 1484 | 7.865706 | ACATTCTGTTGTTCCAATATACTCC | 57.134 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1433 | 1485 | 6.828785 | ACATTCTGTTGTTCCAATATACTCCC | 59.171 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
1434 | 1486 | 6.636454 | TTCTGTTGTTCCAATATACTCCCT | 57.364 | 37.500 | 0.00 | 0.00 | 0.00 | 4.20 |
1435 | 1487 | 6.235231 | TCTGTTGTTCCAATATACTCCCTC | 57.765 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
1436 | 1488 | 5.130477 | TCTGTTGTTCCAATATACTCCCTCC | 59.870 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1437 | 1489 | 4.141801 | TGTTGTTCCAATATACTCCCTCCG | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 4.63 |
1438 | 1490 | 3.649843 | TGTTCCAATATACTCCCTCCGT | 58.350 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
1439 | 1491 | 4.035112 | TGTTCCAATATACTCCCTCCGTT | 58.965 | 43.478 | 0.00 | 0.00 | 0.00 | 4.44 |
1440 | 1492 | 4.100498 | TGTTCCAATATACTCCCTCCGTTC | 59.900 | 45.833 | 0.00 | 0.00 | 0.00 | 3.95 |
1441 | 1493 | 3.236896 | TCCAATATACTCCCTCCGTTCC | 58.763 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
1442 | 1494 | 3.116862 | TCCAATATACTCCCTCCGTTCCT | 60.117 | 47.826 | 0.00 | 0.00 | 0.00 | 3.36 |
1443 | 1495 | 4.106825 | TCCAATATACTCCCTCCGTTCCTA | 59.893 | 45.833 | 0.00 | 0.00 | 0.00 | 2.94 |
1444 | 1496 | 4.836736 | CCAATATACTCCCTCCGTTCCTAA | 59.163 | 45.833 | 0.00 | 0.00 | 0.00 | 2.69 |
1445 | 1497 | 5.306160 | CCAATATACTCCCTCCGTTCCTAAA | 59.694 | 44.000 | 0.00 | 0.00 | 0.00 | 1.85 |
1446 | 1498 | 6.013639 | CCAATATACTCCCTCCGTTCCTAAAT | 60.014 | 42.308 | 0.00 | 0.00 | 0.00 | 1.40 |
1447 | 1499 | 7.179694 | CCAATATACTCCCTCCGTTCCTAAATA | 59.820 | 40.741 | 0.00 | 0.00 | 0.00 | 1.40 |
1448 | 1500 | 8.759782 | CAATATACTCCCTCCGTTCCTAAATAT | 58.240 | 37.037 | 0.00 | 0.00 | 0.00 | 1.28 |
1451 | 1503 | 6.667558 | ACTCCCTCCGTTCCTAAATATAAG | 57.332 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
1452 | 1504 | 6.141790 | ACTCCCTCCGTTCCTAAATATAAGT | 58.858 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
1453 | 1505 | 6.267242 | ACTCCCTCCGTTCCTAAATATAAGTC | 59.733 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
1454 | 1506 | 6.379579 | TCCCTCCGTTCCTAAATATAAGTCT | 58.620 | 40.000 | 0.00 | 0.00 | 0.00 | 3.24 |
1455 | 1507 | 6.842807 | TCCCTCCGTTCCTAAATATAAGTCTT | 59.157 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
1456 | 1508 | 7.346436 | TCCCTCCGTTCCTAAATATAAGTCTTT | 59.654 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
1457 | 1509 | 7.441458 | CCCTCCGTTCCTAAATATAAGTCTTTG | 59.559 | 40.741 | 0.00 | 0.00 | 0.00 | 2.77 |
1458 | 1510 | 7.441458 | CCTCCGTTCCTAAATATAAGTCTTTGG | 59.559 | 40.741 | 0.00 | 0.00 | 0.00 | 3.28 |
1459 | 1511 | 8.081517 | TCCGTTCCTAAATATAAGTCTTTGGA | 57.918 | 34.615 | 0.00 | 0.00 | 0.00 | 3.53 |
1460 | 1512 | 8.202137 | TCCGTTCCTAAATATAAGTCTTTGGAG | 58.798 | 37.037 | 0.00 | 0.00 | 0.00 | 3.86 |
1461 | 1513 | 8.202137 | CCGTTCCTAAATATAAGTCTTTGGAGA | 58.798 | 37.037 | 0.00 | 0.00 | 0.00 | 3.71 |
1462 | 1514 | 9.250624 | CGTTCCTAAATATAAGTCTTTGGAGAG | 57.749 | 37.037 | 0.00 | 0.00 | 31.07 | 3.20 |
1478 | 1530 | 4.769859 | GGAGAGATTCCACTATACCGAC | 57.230 | 50.000 | 0.00 | 0.00 | 46.01 | 4.79 |
1479 | 1531 | 4.142790 | GGAGAGATTCCACTATACCGACA | 58.857 | 47.826 | 0.00 | 0.00 | 46.01 | 4.35 |
1480 | 1532 | 4.767928 | GGAGAGATTCCACTATACCGACAT | 59.232 | 45.833 | 0.00 | 0.00 | 46.01 | 3.06 |
1481 | 1533 | 5.944599 | GGAGAGATTCCACTATACCGACATA | 59.055 | 44.000 | 0.00 | 0.00 | 46.01 | 2.29 |
1482 | 1534 | 6.127952 | GGAGAGATTCCACTATACCGACATAC | 60.128 | 46.154 | 0.00 | 0.00 | 46.01 | 2.39 |
1483 | 1535 | 5.411977 | AGAGATTCCACTATACCGACATACG | 59.588 | 44.000 | 0.00 | 0.00 | 42.18 | 3.06 |
1497 | 1549 | 4.822107 | CGACATACGGAGCAAAATAAGTG | 58.178 | 43.478 | 0.00 | 0.00 | 38.46 | 3.16 |
1498 | 1550 | 4.565166 | CGACATACGGAGCAAAATAAGTGA | 59.435 | 41.667 | 0.00 | 0.00 | 38.46 | 3.41 |
1499 | 1551 | 5.062934 | CGACATACGGAGCAAAATAAGTGAA | 59.937 | 40.000 | 0.00 | 0.00 | 38.46 | 3.18 |
1500 | 1552 | 6.401688 | CGACATACGGAGCAAAATAAGTGAAA | 60.402 | 38.462 | 0.00 | 0.00 | 38.46 | 2.69 |
1501 | 1553 | 6.608610 | ACATACGGAGCAAAATAAGTGAAAC | 58.391 | 36.000 | 0.00 | 0.00 | 0.00 | 2.78 |
1558 | 1610 | 9.924650 | TCTCTACAAAGACTTACATTTAGGAAC | 57.075 | 33.333 | 0.00 | 0.00 | 0.00 | 3.62 |
1559 | 1611 | 8.752766 | TCTACAAAGACTTACATTTAGGAACG | 57.247 | 34.615 | 0.00 | 0.00 | 0.00 | 3.95 |
1560 | 1612 | 6.796705 | ACAAAGACTTACATTTAGGAACGG | 57.203 | 37.500 | 0.00 | 0.00 | 0.00 | 4.44 |
1561 | 1613 | 6.527423 | ACAAAGACTTACATTTAGGAACGGA | 58.473 | 36.000 | 0.00 | 0.00 | 0.00 | 4.69 |
1562 | 1614 | 6.649557 | ACAAAGACTTACATTTAGGAACGGAG | 59.350 | 38.462 | 0.00 | 0.00 | 0.00 | 4.63 |
1563 | 1615 | 5.340439 | AGACTTACATTTAGGAACGGAGG | 57.660 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
1564 | 1616 | 4.161754 | AGACTTACATTTAGGAACGGAGGG | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
1565 | 1617 | 4.098894 | ACTTACATTTAGGAACGGAGGGA | 58.901 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
1566 | 1618 | 4.161754 | ACTTACATTTAGGAACGGAGGGAG | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
1567 | 1619 | 2.547990 | ACATTTAGGAACGGAGGGAGT | 58.452 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
1568 | 1620 | 3.716431 | ACATTTAGGAACGGAGGGAGTA | 58.284 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
1569 | 1621 | 3.705072 | ACATTTAGGAACGGAGGGAGTAG | 59.295 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
1570 | 1622 | 3.463048 | TTTAGGAACGGAGGGAGTAGT | 57.537 | 47.619 | 0.00 | 0.00 | 0.00 | 2.73 |
1571 | 1623 | 3.463048 | TTAGGAACGGAGGGAGTAGTT | 57.537 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
1572 | 1624 | 4.591321 | TTAGGAACGGAGGGAGTAGTTA | 57.409 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
1573 | 1625 | 2.732763 | AGGAACGGAGGGAGTAGTTAC | 58.267 | 52.381 | 0.00 | 0.00 | 0.00 | 2.50 |
1574 | 1626 | 2.311243 | AGGAACGGAGGGAGTAGTTACT | 59.689 | 50.000 | 0.00 | 0.00 | 39.71 | 2.24 |
1587 | 1639 | 5.078411 | AGTAGTTACTCATGGCAAGACTG | 57.922 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
1588 | 1640 | 3.340814 | AGTTACTCATGGCAAGACTGG | 57.659 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
1589 | 1641 | 2.639839 | AGTTACTCATGGCAAGACTGGT | 59.360 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
1590 | 1642 | 3.838317 | AGTTACTCATGGCAAGACTGGTA | 59.162 | 43.478 | 0.00 | 0.00 | 0.00 | 3.25 |
1591 | 1643 | 4.081420 | AGTTACTCATGGCAAGACTGGTAG | 60.081 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
1592 | 1644 | 2.540383 | ACTCATGGCAAGACTGGTAGA | 58.460 | 47.619 | 0.00 | 0.00 | 0.00 | 2.59 |
1593 | 1645 | 2.499289 | ACTCATGGCAAGACTGGTAGAG | 59.501 | 50.000 | 0.00 | 0.00 | 0.00 | 2.43 |
1594 | 1646 | 2.762887 | CTCATGGCAAGACTGGTAGAGA | 59.237 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
1595 | 1647 | 3.378512 | TCATGGCAAGACTGGTAGAGAT | 58.621 | 45.455 | 0.00 | 0.00 | 0.00 | 2.75 |
1596 | 1648 | 3.133542 | TCATGGCAAGACTGGTAGAGATG | 59.866 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
1597 | 1649 | 2.540383 | TGGCAAGACTGGTAGAGATGT | 58.460 | 47.619 | 0.00 | 0.00 | 0.00 | 3.06 |
1598 | 1650 | 2.497675 | TGGCAAGACTGGTAGAGATGTC | 59.502 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1599 | 1651 | 2.159028 | GGCAAGACTGGTAGAGATGTCC | 60.159 | 54.545 | 0.00 | 0.00 | 0.00 | 4.02 |
1600 | 1652 | 2.159028 | GCAAGACTGGTAGAGATGTCCC | 60.159 | 54.545 | 0.00 | 0.00 | 0.00 | 4.46 |
1601 | 1653 | 3.370104 | CAAGACTGGTAGAGATGTCCCT | 58.630 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1602 | 1654 | 3.767309 | AGACTGGTAGAGATGTCCCTT | 57.233 | 47.619 | 0.00 | 0.00 | 0.00 | 3.95 |
1603 | 1655 | 3.637769 | AGACTGGTAGAGATGTCCCTTC | 58.362 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
1604 | 1656 | 2.696187 | GACTGGTAGAGATGTCCCTTCC | 59.304 | 54.545 | 0.00 | 0.00 | 0.00 | 3.46 |
1605 | 1657 | 1.683917 | CTGGTAGAGATGTCCCTTCCG | 59.316 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
1606 | 1658 | 1.041437 | GGTAGAGATGTCCCTTCCGG | 58.959 | 60.000 | 0.00 | 0.00 | 0.00 | 5.14 |
1615 | 1667 | 2.040254 | CCCTTCCGGGTGGGGATA | 60.040 | 66.667 | 20.65 | 0.00 | 46.12 | 2.59 |
1616 | 1668 | 2.449450 | CCCTTCCGGGTGGGGATAC | 61.449 | 68.421 | 20.65 | 0.00 | 46.12 | 2.24 |
1617 | 1669 | 1.691337 | CCTTCCGGGTGGGGATACA | 60.691 | 63.158 | 0.00 | 0.00 | 35.62 | 2.29 |
1618 | 1670 | 1.060163 | CCTTCCGGGTGGGGATACAT | 61.060 | 60.000 | 0.00 | 0.00 | 35.62 | 2.29 |
1619 | 1671 | 0.396811 | CTTCCGGGTGGGGATACATC | 59.603 | 60.000 | 0.00 | 0.00 | 35.62 | 3.06 |
1620 | 1672 | 1.057851 | TTCCGGGTGGGGATACATCC | 61.058 | 60.000 | 0.00 | 0.00 | 46.41 | 3.51 |
1630 | 1682 | 2.910688 | GGATACATCCACGACCATGT | 57.089 | 50.000 | 3.26 | 0.00 | 46.38 | 3.21 |
1631 | 1683 | 2.483876 | GGATACATCCACGACCATGTG | 58.516 | 52.381 | 3.26 | 0.00 | 46.38 | 3.21 |
1632 | 1684 | 2.102420 | GGATACATCCACGACCATGTGA | 59.898 | 50.000 | 3.26 | 0.00 | 46.38 | 3.58 |
1653 | 1705 | 7.722363 | TGTGACTGGAAATAAGCTAATCGATA | 58.278 | 34.615 | 0.00 | 0.00 | 0.00 | 2.92 |
1668 | 1720 | 8.556194 | AGCTAATCGATATTAAATCGTGCAAAA | 58.444 | 29.630 | 0.00 | 0.00 | 41.77 | 2.44 |
1771 | 1824 | 4.932200 | GGATCTTAGATTGCATTAGGGTCG | 59.068 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
1825 | 1878 | 5.109903 | ACACCTAATAGATCGCTTCACAAC | 58.890 | 41.667 | 0.00 | 0.00 | 0.00 | 3.32 |
1828 | 1881 | 6.923508 | CACCTAATAGATCGCTTCACAACATA | 59.076 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
1896 | 1949 | 3.006940 | GGATGCCGTTGTACTGATTCAA | 58.993 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
1897 | 1950 | 3.181510 | GGATGCCGTTGTACTGATTCAAC | 60.182 | 47.826 | 0.00 | 0.00 | 40.02 | 3.18 |
1898 | 1951 | 2.147958 | TGCCGTTGTACTGATTCAACC | 58.852 | 47.619 | 0.00 | 0.00 | 40.22 | 3.77 |
1899 | 1952 | 2.147958 | GCCGTTGTACTGATTCAACCA | 58.852 | 47.619 | 0.00 | 0.00 | 40.22 | 3.67 |
1900 | 1953 | 2.747446 | GCCGTTGTACTGATTCAACCAT | 59.253 | 45.455 | 0.00 | 0.00 | 40.22 | 3.55 |
1901 | 1954 | 3.936453 | GCCGTTGTACTGATTCAACCATA | 59.064 | 43.478 | 0.00 | 0.00 | 40.22 | 2.74 |
1902 | 1955 | 4.201783 | GCCGTTGTACTGATTCAACCATAC | 60.202 | 45.833 | 0.00 | 0.00 | 40.22 | 2.39 |
1903 | 1956 | 5.175859 | CCGTTGTACTGATTCAACCATACT | 58.824 | 41.667 | 0.00 | 0.00 | 40.22 | 2.12 |
1904 | 1957 | 5.063438 | CCGTTGTACTGATTCAACCATACTG | 59.937 | 44.000 | 0.00 | 0.00 | 40.22 | 2.74 |
1905 | 1958 | 5.445939 | CGTTGTACTGATTCAACCATACTGC | 60.446 | 44.000 | 0.00 | 0.00 | 40.22 | 4.40 |
1906 | 1959 | 5.420725 | TGTACTGATTCAACCATACTGCT | 57.579 | 39.130 | 0.00 | 0.00 | 0.00 | 4.24 |
1907 | 1960 | 5.804639 | TGTACTGATTCAACCATACTGCTT | 58.195 | 37.500 | 0.00 | 0.00 | 0.00 | 3.91 |
1908 | 1961 | 5.643348 | TGTACTGATTCAACCATACTGCTTG | 59.357 | 40.000 | 0.00 | 0.00 | 0.00 | 4.01 |
1939 | 1992 | 2.285977 | GGACAACCTTGAGAACACGTT | 58.714 | 47.619 | 0.00 | 0.00 | 0.00 | 3.99 |
1989 | 2042 | 6.015519 | GTGCAATCTATCTGACATAGAGGTCT | 60.016 | 42.308 | 0.00 | 0.00 | 39.20 | 3.85 |
2099 | 2152 | 4.406972 | TCTGTAGCTATTGGCATGAAGACT | 59.593 | 41.667 | 0.00 | 0.00 | 44.79 | 3.24 |
2163 | 2216 | 1.002430 | GCGAATCTATGGATGGAGGCA | 59.998 | 52.381 | 0.00 | 0.00 | 31.75 | 4.75 |
2234 | 2287 | 3.956848 | TCCTGTCAGACTTGATCGATGAT | 59.043 | 43.478 | 0.54 | 0.00 | 35.39 | 2.45 |
2306 | 2359 | 1.207593 | CGAAAGCCGCCTGAACAAG | 59.792 | 57.895 | 0.00 | 0.00 | 0.00 | 3.16 |
2369 | 2422 | 0.332632 | CCCAGGATGAAAGGAAGGCA | 59.667 | 55.000 | 0.00 | 0.00 | 39.69 | 4.75 |
2410 | 2463 | 5.012664 | TGGAGAACATAGACAGTAAAGGCAA | 59.987 | 40.000 | 0.00 | 0.00 | 0.00 | 4.52 |
2453 | 2506 | 2.064762 | GACATGCCAGATAAGCTAGCG | 58.935 | 52.381 | 9.55 | 0.00 | 33.62 | 4.26 |
2522 | 2575 | 3.338249 | TGGATGTGTAGCTTCTTTCTGC | 58.662 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
2534 | 2587 | 5.178996 | AGCTTCTTTCTGCGCTATTCATATG | 59.821 | 40.000 | 9.73 | 0.00 | 0.00 | 1.78 |
2542 | 2595 | 3.058983 | TGCGCTATTCATATGGAAAAGCG | 60.059 | 43.478 | 27.57 | 27.57 | 44.60 | 4.68 |
2782 | 2835 | 4.200092 | GGGATTACAAGACAGGGTGATTC | 58.800 | 47.826 | 0.00 | 0.00 | 0.00 | 2.52 |
2794 | 2847 | 7.275920 | AGACAGGGTGATTCTGTTAATGATAC | 58.724 | 38.462 | 0.00 | 0.00 | 44.51 | 2.24 |
2817 | 2870 | 0.394938 | TCAACGGCTGCAACTCCTTA | 59.605 | 50.000 | 0.50 | 0.00 | 0.00 | 2.69 |
2902 | 2955 | 7.770433 | TGAATGGAGGTGATCATTAGTAGTTTG | 59.230 | 37.037 | 0.00 | 0.00 | 34.18 | 2.93 |
2933 | 2986 | 3.745975 | ACGCGAAGTCATTTCTCAATTCA | 59.254 | 39.130 | 15.93 | 0.00 | 33.44 | 2.57 |
3141 | 3380 | 5.414765 | CCCGGCTTAATAGGAATGATAAACC | 59.585 | 44.000 | 0.00 | 0.00 | 0.00 | 3.27 |
3366 | 3671 | 6.477033 | CCAGGACTTCTACGAAATTCACTATG | 59.523 | 42.308 | 0.00 | 0.00 | 0.00 | 2.23 |
3491 | 3805 | 0.403271 | AAGTGGCCTGATTGCAGAGT | 59.597 | 50.000 | 3.32 | 0.00 | 45.17 | 3.24 |
3524 | 5002 | 7.627293 | ACCATAATATCCAATGTTTTTCCCCTT | 59.373 | 33.333 | 0.00 | 0.00 | 0.00 | 3.95 |
3540 | 5018 | 3.639561 | TCCCCTTGGTTTTGTCTTAAAGC | 59.360 | 43.478 | 0.00 | 0.00 | 36.36 | 3.51 |
3617 | 5095 | 4.398044 | ACGCACTATCCAAAATAAACCTGG | 59.602 | 41.667 | 0.00 | 0.00 | 0.00 | 4.45 |
3840 | 5318 | 7.148255 | TGTCAATCTTATTACAGGTGCAATCAC | 60.148 | 37.037 | 0.00 | 0.00 | 42.40 | 3.06 |
3859 | 5337 | 2.342648 | GAACGAACTCGCTGGGGT | 59.657 | 61.111 | 0.00 | 0.00 | 44.43 | 4.95 |
3882 | 5360 | 1.366319 | AGATGTCAAGGCCCTCACTT | 58.634 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
4049 | 5527 | 1.838112 | ACCAGGTGGCATACATTGTG | 58.162 | 50.000 | 0.00 | 0.00 | 39.32 | 3.33 |
4261 | 5739 | 5.540911 | TCATCTGCCATTTCCTTTTTGTTC | 58.459 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
4262 | 5740 | 5.070180 | TCATCTGCCATTTCCTTTTTGTTCA | 59.930 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4310 | 5789 | 6.316140 | CACAGTAATATGCTACTTTGCAGGAA | 59.684 | 38.462 | 0.00 | 0.00 | 46.71 | 3.36 |
4363 | 5842 | 0.040514 | TCGGAAGCATTTTGTGTGCG | 60.041 | 50.000 | 0.00 | 0.00 | 46.86 | 5.34 |
4398 | 5877 | 4.695396 | TGTAGGTCGTTTTAACAGCAAGA | 58.305 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
4507 | 5986 | 7.775397 | AATTTTGCAAATATGTCCTGTATGC | 57.225 | 32.000 | 13.65 | 0.00 | 0.00 | 3.14 |
4515 | 5994 | 2.908688 | TGTCCTGTATGCATGCGTAT | 57.091 | 45.000 | 21.99 | 9.26 | 0.00 | 3.06 |
4621 | 6100 | 3.544684 | TCAGCTTTGACGGCATAATCAT | 58.455 | 40.909 | 0.00 | 0.00 | 0.00 | 2.45 |
4662 | 6141 | 3.388024 | TGCAAACTTCTCTCCTGTACTGT | 59.612 | 43.478 | 0.00 | 0.00 | 0.00 | 3.55 |
4750 | 6229 | 8.658499 | ACAGTTTCCATTTACCTATATCGTTC | 57.342 | 34.615 | 0.00 | 0.00 | 0.00 | 3.95 |
4925 | 6404 | 7.801716 | TTGATCCCTTTAATCTGAATTACGG | 57.198 | 36.000 | 0.00 | 0.00 | 0.00 | 4.02 |
5010 | 6489 | 9.569122 | GGTTAGAATCCTAAACTATGCCATTTA | 57.431 | 33.333 | 0.00 | 0.00 | 39.05 | 1.40 |
5084 | 6563 | 9.178758 | GAGACCTTAAAATGAACAAGATGGTAT | 57.821 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
5191 | 6670 | 8.453320 | ACAAAGTTAAATGTAGTATTTACCCGC | 58.547 | 33.333 | 0.00 | 0.00 | 0.00 | 6.13 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
56 | 57 | 3.604582 | GAGGAACTTCTGATTGTCTGGG | 58.395 | 50.000 | 0.00 | 0.00 | 41.55 | 4.45 |
68 | 69 | 6.327887 | AGGGTAGAATAGATTGGAGGAACTTC | 59.672 | 42.308 | 0.00 | 0.00 | 41.55 | 3.01 |
73 | 74 | 5.148502 | GTCAGGGTAGAATAGATTGGAGGA | 58.851 | 45.833 | 0.00 | 0.00 | 0.00 | 3.71 |
94 | 95 | 0.032130 | TTGAGTGCTCGTGTGAGGTC | 59.968 | 55.000 | 0.00 | 0.00 | 42.79 | 3.85 |
133 | 134 | 7.037586 | TCAGTTTATTTCCCCTTCTCATAGTGT | 60.038 | 37.037 | 0.00 | 0.00 | 0.00 | 3.55 |
265 | 266 | 1.073216 | CGTGTCCTAAGCTGCACTCG | 61.073 | 60.000 | 1.02 | 0.00 | 0.00 | 4.18 |
268 | 269 | 1.014564 | GTCCGTGTCCTAAGCTGCAC | 61.015 | 60.000 | 1.02 | 0.00 | 0.00 | 4.57 |
312 | 313 | 7.388290 | TCGCTGATATGTTTTTGTTTTGTTC | 57.612 | 32.000 | 0.00 | 0.00 | 0.00 | 3.18 |
378 | 381 | 1.270839 | CGTTTCCTCTTCTCCAGCCAA | 60.271 | 52.381 | 0.00 | 0.00 | 0.00 | 4.52 |
381 | 384 | 0.320771 | TGCGTTTCCTCTTCTCCAGC | 60.321 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
383 | 386 | 0.319555 | CGTGCGTTTCCTCTTCTCCA | 60.320 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
385 | 388 | 0.319641 | ACCGTGCGTTTCCTCTTCTC | 60.320 | 55.000 | 0.00 | 0.00 | 0.00 | 2.87 |
525 | 528 | 2.439156 | GCCATCCGGAAGCAGCTT | 60.439 | 61.111 | 21.49 | 7.60 | 0.00 | 3.74 |
606 | 609 | 1.070786 | GCCACCGAAACAGTCTCCA | 59.929 | 57.895 | 0.00 | 0.00 | 0.00 | 3.86 |
611 | 614 | 0.319083 | TATCACGCCACCGAAACAGT | 59.681 | 50.000 | 0.00 | 0.00 | 38.29 | 3.55 |
643 | 646 | 1.475403 | CAGCTTCCTTCGTCCTCCTA | 58.525 | 55.000 | 0.00 | 0.00 | 0.00 | 2.94 |
648 | 651 | 0.673956 | GGTTCCAGCTTCCTTCGTCC | 60.674 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
671 | 674 | 1.630369 | CATCCAGGACCTTCCAGAACA | 59.370 | 52.381 | 0.00 | 0.00 | 39.61 | 3.18 |
760 | 763 | 1.334160 | AAAAATTGGACCGTGGGGAC | 58.666 | 50.000 | 0.00 | 0.00 | 36.97 | 4.46 |
761 | 764 | 3.852558 | AAAAATTGGACCGTGGGGA | 57.147 | 47.368 | 0.00 | 0.00 | 36.97 | 4.81 |
777 | 780 | 5.163141 | TGGACCATGTGGACTCTTCTAAAAA | 60.163 | 40.000 | 5.96 | 0.00 | 38.94 | 1.94 |
778 | 781 | 4.349636 | TGGACCATGTGGACTCTTCTAAAA | 59.650 | 41.667 | 5.96 | 0.00 | 38.94 | 1.52 |
779 | 782 | 3.907474 | TGGACCATGTGGACTCTTCTAAA | 59.093 | 43.478 | 5.96 | 0.00 | 38.94 | 1.85 |
780 | 783 | 3.516586 | TGGACCATGTGGACTCTTCTAA | 58.483 | 45.455 | 5.96 | 0.00 | 38.94 | 2.10 |
781 | 784 | 3.184382 | TGGACCATGTGGACTCTTCTA | 57.816 | 47.619 | 5.96 | 0.00 | 38.94 | 2.10 |
782 | 785 | 2.030027 | TGGACCATGTGGACTCTTCT | 57.970 | 50.000 | 5.96 | 0.00 | 38.94 | 2.85 |
783 | 786 | 2.859165 | TTGGACCATGTGGACTCTTC | 57.141 | 50.000 | 5.96 | 0.00 | 38.94 | 2.87 |
784 | 787 | 3.814504 | ATTTGGACCATGTGGACTCTT | 57.185 | 42.857 | 5.96 | 0.00 | 38.94 | 2.85 |
785 | 788 | 4.080863 | GTCTATTTGGACCATGTGGACTCT | 60.081 | 45.833 | 5.96 | 0.00 | 38.94 | 3.24 |
786 | 789 | 4.192317 | GTCTATTTGGACCATGTGGACTC | 58.808 | 47.826 | 5.96 | 0.00 | 38.94 | 3.36 |
787 | 790 | 3.369471 | CGTCTATTTGGACCATGTGGACT | 60.369 | 47.826 | 16.08 | 0.00 | 38.94 | 3.85 |
795 | 798 | 0.035820 | GGCCACGTCTATTTGGACCA | 60.036 | 55.000 | 0.00 | 0.00 | 34.39 | 4.02 |
979 | 1025 | 5.555017 | CATCGATGGAGATAGGGAAACAAT | 58.445 | 41.667 | 17.96 | 0.00 | 0.00 | 2.71 |
981 | 1027 | 4.607293 | CATCGATGGAGATAGGGAAACA | 57.393 | 45.455 | 17.96 | 0.00 | 0.00 | 2.83 |
1021 | 1072 | 2.550830 | TCAGAGGCAAAAGTCCACTC | 57.449 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1022 | 1073 | 3.515602 | AATCAGAGGCAAAAGTCCACT | 57.484 | 42.857 | 0.00 | 0.00 | 0.00 | 4.00 |
1136 | 1187 | 6.871562 | CATTCGATGCTCTTAACACTACATC | 58.128 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1231 | 1283 | 5.007136 | GCAAAATCAAACCGAATGGACAAAA | 59.993 | 36.000 | 0.00 | 0.00 | 39.21 | 2.44 |
1249 | 1301 | 4.933400 | CCAACTACAGTACTACGGCAAAAT | 59.067 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
1252 | 1304 | 3.156293 | TCCAACTACAGTACTACGGCAA | 58.844 | 45.455 | 0.00 | 0.00 | 0.00 | 4.52 |
1290 | 1342 | 6.325286 | GGTATAGGTGTGAATCCTTTCTCTCT | 59.675 | 42.308 | 0.00 | 0.00 | 36.60 | 3.10 |
1291 | 1343 | 6.463190 | GGGTATAGGTGTGAATCCTTTCTCTC | 60.463 | 46.154 | 0.00 | 0.00 | 36.60 | 3.20 |
1292 | 1344 | 5.367060 | GGGTATAGGTGTGAATCCTTTCTCT | 59.633 | 44.000 | 0.00 | 0.00 | 36.60 | 3.10 |
1293 | 1345 | 5.130477 | TGGGTATAGGTGTGAATCCTTTCTC | 59.870 | 44.000 | 0.00 | 0.00 | 36.60 | 2.87 |
1294 | 1346 | 5.036916 | TGGGTATAGGTGTGAATCCTTTCT | 58.963 | 41.667 | 0.00 | 0.00 | 36.60 | 2.52 |
1295 | 1347 | 5.367945 | TGGGTATAGGTGTGAATCCTTTC | 57.632 | 43.478 | 0.00 | 0.00 | 36.60 | 2.62 |
1296 | 1348 | 5.789574 | TTGGGTATAGGTGTGAATCCTTT | 57.210 | 39.130 | 0.00 | 0.00 | 36.60 | 3.11 |
1297 | 1349 | 5.789574 | TTTGGGTATAGGTGTGAATCCTT | 57.210 | 39.130 | 0.00 | 0.00 | 36.60 | 3.36 |
1320 | 1372 | 5.880332 | ACACCGTTGTATTTTATGCTGAGAT | 59.120 | 36.000 | 0.00 | 0.00 | 32.60 | 2.75 |
1336 | 1388 | 2.028476 | TCATCTAACTCCCACACCGTTG | 60.028 | 50.000 | 0.00 | 0.00 | 0.00 | 4.10 |
1430 | 1482 | 6.379579 | AGACTTATATTTAGGAACGGAGGGA | 58.620 | 40.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1431 | 1483 | 6.667558 | AGACTTATATTTAGGAACGGAGGG | 57.332 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
1432 | 1484 | 7.441458 | CCAAAGACTTATATTTAGGAACGGAGG | 59.559 | 40.741 | 0.00 | 0.00 | 0.00 | 4.30 |
1433 | 1485 | 8.202137 | TCCAAAGACTTATATTTAGGAACGGAG | 58.798 | 37.037 | 0.00 | 0.00 | 0.00 | 4.63 |
1434 | 1486 | 8.081517 | TCCAAAGACTTATATTTAGGAACGGA | 57.918 | 34.615 | 0.00 | 0.00 | 0.00 | 4.69 |
1435 | 1487 | 8.202137 | TCTCCAAAGACTTATATTTAGGAACGG | 58.798 | 37.037 | 0.00 | 0.00 | 0.00 | 4.44 |
1436 | 1488 | 9.250624 | CTCTCCAAAGACTTATATTTAGGAACG | 57.749 | 37.037 | 0.00 | 0.00 | 0.00 | 3.95 |
1457 | 1509 | 4.142790 | TGTCGGTATAGTGGAATCTCTCC | 58.857 | 47.826 | 0.00 | 0.00 | 45.64 | 3.71 |
1458 | 1510 | 5.968528 | ATGTCGGTATAGTGGAATCTCTC | 57.031 | 43.478 | 0.00 | 0.00 | 0.00 | 3.20 |
1459 | 1511 | 5.411977 | CGTATGTCGGTATAGTGGAATCTCT | 59.588 | 44.000 | 0.00 | 0.00 | 35.71 | 3.10 |
1460 | 1512 | 5.629097 | CGTATGTCGGTATAGTGGAATCTC | 58.371 | 45.833 | 0.00 | 0.00 | 35.71 | 2.75 |
1461 | 1513 | 5.624344 | CGTATGTCGGTATAGTGGAATCT | 57.376 | 43.478 | 0.00 | 0.00 | 35.71 | 2.40 |
1475 | 1527 | 4.565166 | TCACTTATTTTGCTCCGTATGTCG | 59.435 | 41.667 | 0.00 | 0.00 | 39.52 | 4.35 |
1476 | 1528 | 6.417191 | TTCACTTATTTTGCTCCGTATGTC | 57.583 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
1477 | 1529 | 6.430000 | AGTTTCACTTATTTTGCTCCGTATGT | 59.570 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
1478 | 1530 | 6.842163 | AGTTTCACTTATTTTGCTCCGTATG | 58.158 | 36.000 | 0.00 | 0.00 | 0.00 | 2.39 |
1479 | 1531 | 8.732746 | ATAGTTTCACTTATTTTGCTCCGTAT | 57.267 | 30.769 | 0.00 | 0.00 | 0.00 | 3.06 |
1480 | 1532 | 9.090692 | GTATAGTTTCACTTATTTTGCTCCGTA | 57.909 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
1481 | 1533 | 7.822822 | AGTATAGTTTCACTTATTTTGCTCCGT | 59.177 | 33.333 | 0.00 | 0.00 | 0.00 | 4.69 |
1482 | 1534 | 8.197988 | AGTATAGTTTCACTTATTTTGCTCCG | 57.802 | 34.615 | 0.00 | 0.00 | 0.00 | 4.63 |
1483 | 1535 | 9.384764 | AGAGTATAGTTTCACTTATTTTGCTCC | 57.615 | 33.333 | 0.00 | 0.00 | 0.00 | 4.70 |
1532 | 1584 | 9.924650 | GTTCCTAAATGTAAGTCTTTGTAGAGA | 57.075 | 33.333 | 0.00 | 0.00 | 0.00 | 3.10 |
1533 | 1585 | 8.861101 | CGTTCCTAAATGTAAGTCTTTGTAGAG | 58.139 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
1534 | 1586 | 7.816031 | CCGTTCCTAAATGTAAGTCTTTGTAGA | 59.184 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
1535 | 1587 | 7.816031 | TCCGTTCCTAAATGTAAGTCTTTGTAG | 59.184 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
1536 | 1588 | 7.669427 | TCCGTTCCTAAATGTAAGTCTTTGTA | 58.331 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
1537 | 1589 | 6.527423 | TCCGTTCCTAAATGTAAGTCTTTGT | 58.473 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
1538 | 1590 | 6.092259 | CCTCCGTTCCTAAATGTAAGTCTTTG | 59.908 | 42.308 | 0.00 | 0.00 | 0.00 | 2.77 |
1539 | 1591 | 6.171213 | CCTCCGTTCCTAAATGTAAGTCTTT | 58.829 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1540 | 1592 | 5.338137 | CCCTCCGTTCCTAAATGTAAGTCTT | 60.338 | 44.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1541 | 1593 | 4.161754 | CCCTCCGTTCCTAAATGTAAGTCT | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 3.24 |
1542 | 1594 | 4.161001 | TCCCTCCGTTCCTAAATGTAAGTC | 59.839 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
1543 | 1595 | 4.098894 | TCCCTCCGTTCCTAAATGTAAGT | 58.901 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
1544 | 1596 | 4.161754 | ACTCCCTCCGTTCCTAAATGTAAG | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 2.34 |
1545 | 1597 | 4.098894 | ACTCCCTCCGTTCCTAAATGTAA | 58.901 | 43.478 | 0.00 | 0.00 | 0.00 | 2.41 |
1546 | 1598 | 3.716431 | ACTCCCTCCGTTCCTAAATGTA | 58.284 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
1547 | 1599 | 2.547990 | ACTCCCTCCGTTCCTAAATGT | 58.452 | 47.619 | 0.00 | 0.00 | 0.00 | 2.71 |
1548 | 1600 | 3.705072 | ACTACTCCCTCCGTTCCTAAATG | 59.295 | 47.826 | 0.00 | 0.00 | 0.00 | 2.32 |
1549 | 1601 | 3.991683 | ACTACTCCCTCCGTTCCTAAAT | 58.008 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
1550 | 1602 | 3.463048 | ACTACTCCCTCCGTTCCTAAA | 57.537 | 47.619 | 0.00 | 0.00 | 0.00 | 1.85 |
1551 | 1603 | 3.463048 | AACTACTCCCTCCGTTCCTAA | 57.537 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
1552 | 1604 | 3.525199 | AGTAACTACTCCCTCCGTTCCTA | 59.475 | 47.826 | 0.00 | 0.00 | 0.00 | 2.94 |
1553 | 1605 | 2.311243 | AGTAACTACTCCCTCCGTTCCT | 59.689 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1554 | 1606 | 2.687425 | GAGTAACTACTCCCTCCGTTCC | 59.313 | 54.545 | 5.70 | 0.00 | 45.33 | 3.62 |
1565 | 1617 | 4.081420 | CCAGTCTTGCCATGAGTAACTACT | 60.081 | 45.833 | 0.00 | 0.00 | 39.71 | 2.57 |
1566 | 1618 | 4.184629 | CCAGTCTTGCCATGAGTAACTAC | 58.815 | 47.826 | 0.00 | 0.00 | 0.00 | 2.73 |
1567 | 1619 | 3.838317 | ACCAGTCTTGCCATGAGTAACTA | 59.162 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
1568 | 1620 | 2.639839 | ACCAGTCTTGCCATGAGTAACT | 59.360 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
1569 | 1621 | 3.059352 | ACCAGTCTTGCCATGAGTAAC | 57.941 | 47.619 | 0.00 | 0.00 | 0.00 | 2.50 |
1570 | 1622 | 4.093743 | TCTACCAGTCTTGCCATGAGTAA | 58.906 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
1571 | 1623 | 3.701542 | CTCTACCAGTCTTGCCATGAGTA | 59.298 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
1572 | 1624 | 2.499289 | CTCTACCAGTCTTGCCATGAGT | 59.501 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1573 | 1625 | 2.762887 | TCTCTACCAGTCTTGCCATGAG | 59.237 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1574 | 1626 | 2.820178 | TCTCTACCAGTCTTGCCATGA | 58.180 | 47.619 | 0.00 | 0.00 | 0.00 | 3.07 |
1575 | 1627 | 3.118482 | ACATCTCTACCAGTCTTGCCATG | 60.118 | 47.826 | 0.00 | 0.00 | 0.00 | 3.66 |
1576 | 1628 | 3.110705 | ACATCTCTACCAGTCTTGCCAT | 58.889 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
1577 | 1629 | 2.497675 | GACATCTCTACCAGTCTTGCCA | 59.502 | 50.000 | 0.00 | 0.00 | 0.00 | 4.92 |
1578 | 1630 | 2.159028 | GGACATCTCTACCAGTCTTGCC | 60.159 | 54.545 | 0.00 | 0.00 | 0.00 | 4.52 |
1579 | 1631 | 2.159028 | GGGACATCTCTACCAGTCTTGC | 60.159 | 54.545 | 0.00 | 0.00 | 0.00 | 4.01 |
1580 | 1632 | 3.370104 | AGGGACATCTCTACCAGTCTTG | 58.630 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1581 | 1633 | 3.767309 | AGGGACATCTCTACCAGTCTT | 57.233 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
1582 | 1634 | 3.628769 | GGAAGGGACATCTCTACCAGTCT | 60.629 | 52.174 | 0.00 | 0.00 | 0.00 | 3.24 |
1583 | 1635 | 2.696187 | GGAAGGGACATCTCTACCAGTC | 59.304 | 54.545 | 0.00 | 0.00 | 0.00 | 3.51 |
1584 | 1636 | 2.753247 | GGAAGGGACATCTCTACCAGT | 58.247 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
1585 | 1637 | 1.683917 | CGGAAGGGACATCTCTACCAG | 59.316 | 57.143 | 0.00 | 0.00 | 0.00 | 4.00 |
1586 | 1638 | 1.776662 | CGGAAGGGACATCTCTACCA | 58.223 | 55.000 | 0.00 | 0.00 | 0.00 | 3.25 |
1600 | 1652 | 0.396811 | GATGTATCCCCACCCGGAAG | 59.603 | 60.000 | 0.73 | 0.00 | 34.93 | 3.46 |
1601 | 1653 | 1.057851 | GGATGTATCCCCACCCGGAA | 61.058 | 60.000 | 0.73 | 0.00 | 41.20 | 4.30 |
1602 | 1654 | 1.460689 | GGATGTATCCCCACCCGGA | 60.461 | 63.158 | 0.73 | 0.00 | 41.20 | 5.14 |
1603 | 1655 | 1.768482 | TGGATGTATCCCCACCCGG | 60.768 | 63.158 | 8.37 | 0.00 | 46.59 | 5.73 |
1604 | 1656 | 1.450211 | GTGGATGTATCCCCACCCG | 59.550 | 63.158 | 8.37 | 0.00 | 46.59 | 5.28 |
1607 | 1659 | 0.106149 | GGTCGTGGATGTATCCCCAC | 59.894 | 60.000 | 8.37 | 0.00 | 46.59 | 4.61 |
1608 | 1660 | 0.325765 | TGGTCGTGGATGTATCCCCA | 60.326 | 55.000 | 8.37 | 5.64 | 46.59 | 4.96 |
1609 | 1661 | 1.056660 | ATGGTCGTGGATGTATCCCC | 58.943 | 55.000 | 8.37 | 3.21 | 46.59 | 4.81 |
1610 | 1662 | 1.416401 | ACATGGTCGTGGATGTATCCC | 59.584 | 52.381 | 8.37 | 0.00 | 46.59 | 3.85 |
1612 | 1664 | 3.123804 | GTCACATGGTCGTGGATGTATC | 58.876 | 50.000 | 0.00 | 0.00 | 37.50 | 2.24 |
1613 | 1665 | 2.766263 | AGTCACATGGTCGTGGATGTAT | 59.234 | 45.455 | 0.00 | 0.00 | 37.50 | 2.29 |
1614 | 1666 | 2.094234 | CAGTCACATGGTCGTGGATGTA | 60.094 | 50.000 | 0.00 | 0.00 | 37.50 | 2.29 |
1615 | 1667 | 0.976641 | AGTCACATGGTCGTGGATGT | 59.023 | 50.000 | 0.00 | 0.00 | 37.50 | 3.06 |
1616 | 1668 | 1.362768 | CAGTCACATGGTCGTGGATG | 58.637 | 55.000 | 0.00 | 0.00 | 37.50 | 3.51 |
1617 | 1669 | 0.250234 | CCAGTCACATGGTCGTGGAT | 59.750 | 55.000 | 0.00 | 0.00 | 37.50 | 3.41 |
1618 | 1670 | 0.830023 | TCCAGTCACATGGTCGTGGA | 60.830 | 55.000 | 0.00 | 1.15 | 41.43 | 4.02 |
1619 | 1671 | 0.034756 | TTCCAGTCACATGGTCGTGG | 59.965 | 55.000 | 0.00 | 0.00 | 41.43 | 4.94 |
1620 | 1672 | 1.877637 | TTTCCAGTCACATGGTCGTG | 58.122 | 50.000 | 0.00 | 0.00 | 41.43 | 4.35 |
1621 | 1673 | 2.859165 | ATTTCCAGTCACATGGTCGT | 57.141 | 45.000 | 0.00 | 0.00 | 41.43 | 4.34 |
1622 | 1674 | 3.063997 | GCTTATTTCCAGTCACATGGTCG | 59.936 | 47.826 | 0.00 | 0.00 | 41.43 | 4.79 |
1623 | 1675 | 4.265073 | AGCTTATTTCCAGTCACATGGTC | 58.735 | 43.478 | 0.00 | 0.00 | 41.43 | 4.02 |
1624 | 1676 | 4.307032 | AGCTTATTTCCAGTCACATGGT | 57.693 | 40.909 | 0.00 | 0.00 | 41.43 | 3.55 |
1625 | 1677 | 6.293081 | CGATTAGCTTATTTCCAGTCACATGG | 60.293 | 42.308 | 0.00 | 0.00 | 42.11 | 3.66 |
1626 | 1678 | 6.479990 | TCGATTAGCTTATTTCCAGTCACATG | 59.520 | 38.462 | 0.00 | 0.00 | 0.00 | 3.21 |
1627 | 1679 | 6.582636 | TCGATTAGCTTATTTCCAGTCACAT | 58.417 | 36.000 | 0.00 | 0.00 | 0.00 | 3.21 |
1628 | 1680 | 5.972935 | TCGATTAGCTTATTTCCAGTCACA | 58.027 | 37.500 | 0.00 | 0.00 | 0.00 | 3.58 |
1629 | 1681 | 8.764524 | ATATCGATTAGCTTATTTCCAGTCAC | 57.235 | 34.615 | 1.71 | 0.00 | 0.00 | 3.67 |
1653 | 1705 | 9.432077 | GTCATTTTTGTTTTTGCACGATTTAAT | 57.568 | 25.926 | 0.00 | 0.00 | 0.00 | 1.40 |
1663 | 1715 | 8.141835 | ACCTATGAAGTCATTTTTGTTTTTGC | 57.858 | 30.769 | 0.00 | 0.00 | 37.76 | 3.68 |
1668 | 1720 | 8.137437 | CACAGAACCTATGAAGTCATTTTTGTT | 58.863 | 33.333 | 0.00 | 0.00 | 37.76 | 2.83 |
1897 | 1950 | 2.787473 | TGGAACTCCAAGCAGTATGG | 57.213 | 50.000 | 0.00 | 0.00 | 44.35 | 2.74 |
1907 | 1960 | 1.780309 | AGGTTGTCCATTGGAACTCCA | 59.220 | 47.619 | 7.05 | 0.00 | 39.31 | 3.86 |
1908 | 1961 | 2.558359 | CAAGGTTGTCCATTGGAACTCC | 59.442 | 50.000 | 7.05 | 9.68 | 31.38 | 3.85 |
1939 | 1992 | 7.724061 | ACTGAAAATTTAAGCCTTTGTCCTCTA | 59.276 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
1989 | 2042 | 4.743057 | AGAGCTGTGTCATGCTATGTAA | 57.257 | 40.909 | 0.00 | 0.00 | 39.91 | 2.41 |
2099 | 2152 | 6.611236 | TCTGAATCATGTACCCTGATAGTTCA | 59.389 | 38.462 | 8.08 | 8.35 | 33.08 | 3.18 |
2369 | 2422 | 1.565759 | TCCAGAATAGCCCATGCAGTT | 59.434 | 47.619 | 0.00 | 0.00 | 41.13 | 3.16 |
2410 | 2463 | 3.967467 | ATCTCTCTGGGCAATGGAAAT | 57.033 | 42.857 | 0.00 | 0.00 | 0.00 | 2.17 |
2423 | 2476 | 4.774660 | ATCTGGCATGTCAAATCTCTCT | 57.225 | 40.909 | 0.00 | 0.00 | 0.00 | 3.10 |
2453 | 2506 | 0.953727 | TGCATTGACTTGTGTGCTCC | 59.046 | 50.000 | 0.00 | 0.00 | 38.37 | 4.70 |
2534 | 2587 | 1.261619 | CAGACAGTGTCACGCTTTTCC | 59.738 | 52.381 | 24.73 | 0.00 | 34.60 | 3.13 |
2542 | 2595 | 1.160137 | GAATGGGCAGACAGTGTCAC | 58.840 | 55.000 | 24.73 | 15.70 | 34.60 | 3.67 |
2641 | 2694 | 3.352648 | GGGCAGTTGGTAAGCTTCATAA | 58.647 | 45.455 | 0.00 | 0.00 | 0.00 | 1.90 |
2761 | 2814 | 4.878397 | CAGAATCACCCTGTCTTGTAATCC | 59.122 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
2782 | 2835 | 4.084537 | GCCGTTGATCCGTATCATTAACAG | 60.085 | 45.833 | 0.00 | 0.00 | 41.73 | 3.16 |
2794 | 2847 | 1.970917 | GAGTTGCAGCCGTTGATCCG | 61.971 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
2817 | 2870 | 8.388656 | TCATTCTAATAAGTACCCACCTTCTT | 57.611 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
2845 | 2898 | 2.650322 | TGGAAGGGCCAATAACAGGTTA | 59.350 | 45.455 | 6.18 | 0.00 | 45.87 | 2.85 |
2848 | 2901 | 3.998560 | TGGAAGGGCCAATAACAGG | 57.001 | 52.632 | 6.18 | 0.00 | 45.87 | 4.00 |
2902 | 2955 | 7.167635 | TGAGAAATGACTTCGCGTTATATCTTC | 59.832 | 37.037 | 5.77 | 3.65 | 39.22 | 2.87 |
2947 | 3000 | 7.500720 | TGTACGTTAGATATCAGATCGGAAA | 57.499 | 36.000 | 5.32 | 0.00 | 0.00 | 3.13 |
2969 | 3208 | 7.375106 | CTGAATTATCTTCAGCTGAGTTTGT | 57.625 | 36.000 | 17.43 | 5.56 | 39.36 | 2.83 |
2995 | 3234 | 5.241506 | TCTTTCACCAGTTCAAAGCTATTGG | 59.758 | 40.000 | 8.23 | 2.31 | 0.00 | 3.16 |
3044 | 3283 | 1.065126 | ACTTGAGCAGGGGCATAGAAC | 60.065 | 52.381 | 0.00 | 0.00 | 44.61 | 3.01 |
3141 | 3380 | 3.304659 | GGTGCACCTTGTTGTTATGAGTG | 60.305 | 47.826 | 29.12 | 0.00 | 0.00 | 3.51 |
3192 | 3431 | 4.497300 | CCAAGCACACATAATTTTGAGGG | 58.503 | 43.478 | 2.69 | 0.00 | 0.00 | 4.30 |
3200 | 3439 | 2.756760 | CTCCAAGCCAAGCACACATAAT | 59.243 | 45.455 | 0.00 | 0.00 | 0.00 | 1.28 |
3204 | 3443 | 2.195567 | GCTCCAAGCCAAGCACACA | 61.196 | 57.895 | 0.00 | 0.00 | 38.42 | 3.72 |
3366 | 3671 | 0.326264 | ACTTGGGTGGAGCTCATGAC | 59.674 | 55.000 | 17.19 | 8.57 | 0.00 | 3.06 |
3491 | 3805 | 5.704354 | ACATTGGATATTATGGTGCAAGGA | 58.296 | 37.500 | 0.00 | 0.00 | 32.87 | 3.36 |
3524 | 5002 | 3.280295 | TGGTCGCTTTAAGACAAAACCA | 58.720 | 40.909 | 0.00 | 0.00 | 40.20 | 3.67 |
3741 | 5219 | 9.664332 | CACATTTCCCATTCAAAATTAACCATA | 57.336 | 29.630 | 0.00 | 0.00 | 0.00 | 2.74 |
3742 | 5220 | 8.162746 | ACACATTTCCCATTCAAAATTAACCAT | 58.837 | 29.630 | 0.00 | 0.00 | 0.00 | 3.55 |
3840 | 5318 | 1.738099 | CCCCAGCGAGTTCGTTCAG | 60.738 | 63.158 | 3.27 | 0.00 | 42.22 | 3.02 |
3859 | 5337 | 3.330701 | AGTGAGGGCCTTGACATCTAAAA | 59.669 | 43.478 | 7.89 | 0.00 | 0.00 | 1.52 |
3882 | 5360 | 9.748708 | CTTTGATTCTTGTTCCTTTGTAATCAA | 57.251 | 29.630 | 0.00 | 0.00 | 39.05 | 2.57 |
4507 | 5986 | 5.409520 | ACCTGCATATTTCTGTATACGCATG | 59.590 | 40.000 | 0.00 | 0.00 | 0.00 | 4.06 |
4515 | 5994 | 6.245408 | AGAAAACCACCTGCATATTTCTGTA | 58.755 | 36.000 | 0.00 | 0.00 | 36.19 | 2.74 |
4621 | 6100 | 1.619827 | CAAGATTTTGGAGGCTGCCAA | 59.380 | 47.619 | 22.65 | 12.50 | 45.77 | 4.52 |
4750 | 6229 | 9.801873 | CAACCCTCAATTAATGTAAACAATAGG | 57.198 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
4923 | 6402 | 5.327091 | CAGCATTCAGAAGTTATTTCACCG | 58.673 | 41.667 | 0.00 | 0.00 | 38.31 | 4.94 |
4925 | 6404 | 6.500684 | TCCAGCATTCAGAAGTTATTTCAC | 57.499 | 37.500 | 0.00 | 0.00 | 38.31 | 3.18 |
4970 | 6449 | 3.985019 | TCTAACCATTCGCCCACTTTA | 57.015 | 42.857 | 0.00 | 0.00 | 0.00 | 1.85 |
5084 | 6563 | 0.253044 | GCAACTGAGGAGGTATGCCA | 59.747 | 55.000 | 1.54 | 0.00 | 37.19 | 4.92 |
5191 | 6670 | 6.932356 | ATGTTTATCCAGCACAAGATGTAG | 57.068 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.