Multiple sequence alignment - TraesCS6A01G217400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G217400 chr6A 100.000 6430 0 0 1 6430 400120806 400114377 0.000000e+00 11875.0
1 TraesCS6A01G217400 chr6A 92.308 52 3 1 5248 5299 222678848 222678898 8.940000e-09 73.1
2 TraesCS6A01G217400 chr6D 95.570 2235 51 10 3277 5474 277666865 277664642 0.000000e+00 3535.0
3 TraesCS6A01G217400 chr6D 92.629 1750 85 17 120 1857 277669795 277668078 0.000000e+00 2477.0
4 TraesCS6A01G217400 chr6D 96.614 1211 33 3 1884 3089 277668078 277666871 0.000000e+00 2002.0
5 TraesCS6A01G217400 chr6D 93.614 689 25 6 5512 6184 277664330 277663645 0.000000e+00 1011.0
6 TraesCS6A01G217400 chr6D 79.592 245 28 8 6167 6411 300863570 300863792 8.630000e-34 156.0
7 TraesCS6A01G217400 chr6D 97.674 43 1 0 5257 5299 140086940 140086898 2.490000e-09 75.0
8 TraesCS6A01G217400 chr6D 95.556 45 2 0 5255 5299 58433754 58433798 8.940000e-09 73.1
9 TraesCS6A01G217400 chr6D 92.308 52 3 1 5248 5299 162954445 162954495 8.940000e-09 73.1
10 TraesCS6A01G217400 chr6D 97.561 41 1 0 5258 5298 81663175 81663215 3.220000e-08 71.3
11 TraesCS6A01G217400 chr6D 90.741 54 4 1 5249 5301 86550927 86550874 3.220000e-08 71.3
12 TraesCS6A01G217400 chr6D 93.478 46 3 0 5253 5298 2956559 2956604 1.160000e-07 69.4
13 TraesCS6A01G217400 chr6D 89.286 56 5 1 5258 5313 56554383 56554329 1.160000e-07 69.4
14 TraesCS6A01G217400 chr6D 90.385 52 3 2 5255 5306 471540003 471540052 4.160000e-07 67.6
15 TraesCS6A01G217400 chr6D 84.058 69 5 3 5258 5321 463627280 463627213 1.940000e-05 62.1
16 TraesCS6A01G217400 chr6B 94.153 1984 75 17 832 2797 439397693 439395733 0.000000e+00 2983.0
17 TraesCS6A01G217400 chr6B 96.510 1805 44 7 3687 5474 439394883 439393081 0.000000e+00 2966.0
18 TraesCS6A01G217400 chr6B 90.774 607 32 8 121 717 439398386 439397794 0.000000e+00 789.0
19 TraesCS6A01G217400 chr6B 91.858 479 23 6 5506 5969 439392777 439392300 0.000000e+00 654.0
20 TraesCS6A01G217400 chr6B 92.010 413 8 7 3277 3688 439395351 439394963 2.030000e-154 556.0
21 TraesCS6A01G217400 chr6B 97.627 295 6 1 2796 3089 439395651 439395357 7.440000e-139 505.0
22 TraesCS6A01G217400 chr6B 99.487 195 0 1 3082 3276 422696827 422697020 2.850000e-93 353.0
23 TraesCS6A01G217400 chr6B 91.765 85 6 1 6101 6184 439391914 439391830 4.070000e-22 117.0
24 TraesCS6A01G217400 chr6B 90.741 54 5 0 5246 5299 646750155 646750102 8.940000e-09 73.1
25 TraesCS6A01G217400 chr6B 90.741 54 5 0 5246 5299 646750265 646750212 8.940000e-09 73.1
26 TraesCS6A01G217400 chr7B 98.995 199 2 0 3079 3277 246011565 246011367 2.200000e-94 357.0
27 TraesCS6A01G217400 chr7B 100.000 193 0 0 3083 3275 413255446 413255254 2.200000e-94 357.0
28 TraesCS6A01G217400 chr3A 99.487 195 1 0 3085 3279 359345760 359345954 7.930000e-94 355.0
29 TraesCS6A01G217400 chr3A 88.462 208 20 3 6204 6411 31549217 31549420 1.380000e-61 248.0
30 TraesCS6A01G217400 chr3A 97.917 48 1 0 5251 5298 601398928 601398881 4.130000e-12 84.2
31 TraesCS6A01G217400 chr7A 98.985 197 2 0 3089 3285 15837924 15838120 2.850000e-93 353.0
32 TraesCS6A01G217400 chr7A 100.000 189 0 0 3090 3278 24466362 24466174 3.690000e-92 350.0
33 TraesCS6A01G217400 chr7A 83.704 270 39 5 6164 6430 731693781 731693514 3.850000e-62 250.0
34 TraesCS6A01G217400 chr7A 94.545 55 2 1 5244 5298 192669397 192669450 4.130000e-12 84.2
35 TraesCS6A01G217400 chr7A 94.231 52 1 2 5250 5299 58226134 58226083 1.920000e-10 78.7
36 TraesCS6A01G217400 chr4A 99.485 194 1 0 3081 3274 229501778 229501585 2.850000e-93 353.0
37 TraesCS6A01G217400 chr4A 91.946 149 12 0 998 1146 622281848 622281996 6.530000e-50 209.0
38 TraesCS6A01G217400 chr4A 94.000 50 3 0 5250 5299 127224729 127224680 6.910000e-10 76.8
39 TraesCS6A01G217400 chr4A 94.000 50 1 2 5250 5298 680371611 680371659 2.490000e-09 75.0
40 TraesCS6A01G217400 chr4A 92.308 52 2 2 5250 5299 670849347 670849296 8.940000e-09 73.1
41 TraesCS6A01G217400 chr2A 99.487 195 0 1 3082 3276 569281658 569281851 2.850000e-93 353.0
42 TraesCS6A01G217400 chr2A 86.266 233 31 1 6179 6411 167395098 167394867 1.070000e-62 252.0
43 TraesCS6A01G217400 chr2A 83.051 236 32 8 6179 6411 673147810 673147580 2.350000e-49 207.0
44 TraesCS6A01G217400 chrUn 98.985 197 1 1 3078 3274 40706926 40706731 1.030000e-92 351.0
45 TraesCS6A01G217400 chrUn 76.033 242 41 7 6179 6407 362561231 362561468 6.820000e-20 110.0
46 TraesCS6A01G217400 chrUn 95.122 41 2 0 5258 5298 73917627 73917587 1.500000e-06 65.8
47 TraesCS6A01G217400 chrUn 91.489 47 4 0 5252 5298 153391837 153391883 1.500000e-06 65.8
48 TraesCS6A01G217400 chrUn 82.857 70 12 0 2813 2882 41472383 41472314 5.380000e-06 63.9
49 TraesCS6A01G217400 chrUn 90.909 44 4 0 5255 5298 201356659 201356616 6.960000e-05 60.2
50 TraesCS6A01G217400 chrUn 97.059 34 1 0 5258 5291 37844549 37844516 2.500000e-04 58.4
51 TraesCS6A01G217400 chr3D 86.695 233 30 1 6179 6411 10910298 10910067 2.300000e-64 257.0
52 TraesCS6A01G217400 chr3D 93.458 107 6 1 20 125 22092979 22092873 2.400000e-34 158.0
53 TraesCS6A01G217400 chr3D 79.116 249 34 13 6176 6411 296163039 296163282 8.630000e-34 156.0
54 TraesCS6A01G217400 chr3D 85.714 70 10 0 2813 2882 582777227 582777158 2.490000e-09 75.0
55 TraesCS6A01G217400 chr3D 86.765 68 5 3 5254 5318 458619956 458620022 8.940000e-09 73.1
56 TraesCS6A01G217400 chr1A 85.837 233 32 1 6179 6411 57954899 57954668 4.980000e-61 246.0
57 TraesCS6A01G217400 chr1A 87.662 154 19 0 6258 6411 331388598 331388445 5.120000e-41 180.0
58 TraesCS6A01G217400 chr1A 93.636 110 3 3 20 126 247338962 247338854 1.860000e-35 161.0
59 TraesCS6A01G217400 chr1A 92.157 51 4 0 5256 5306 385898394 385898344 8.940000e-09 73.1
60 TraesCS6A01G217400 chr1A 90.741 54 1 4 5258 5309 530164674 530164623 1.160000e-07 69.4
61 TraesCS6A01G217400 chr7D 84.647 241 30 5 6175 6409 127681079 127680840 3.880000e-57 233.0
62 TraesCS6A01G217400 chr7D 90.598 117 8 2 11 125 11313023 11312908 1.120000e-32 152.0
63 TraesCS6A01G217400 chr7D 92.857 56 1 3 5246 5299 54836091 54836145 1.920000e-10 78.7
64 TraesCS6A01G217400 chr7D 93.750 48 3 0 5251 5298 152649527 152649574 8.940000e-09 73.1
65 TraesCS6A01G217400 chr5D 84.388 237 32 4 6177 6411 561893238 561893005 1.800000e-55 228.0
66 TraesCS6A01G217400 chr5D 90.184 163 13 3 987 1149 546657242 546657083 6.530000e-50 209.0
67 TraesCS6A01G217400 chr5D 80.645 248 31 10 6177 6411 124344746 124344503 6.630000e-40 176.0
68 TraesCS6A01G217400 chr5D 94.495 109 3 2 20 126 151671651 151671544 1.430000e-36 165.0
69 TraesCS6A01G217400 chr5D 82.540 126 16 6 6172 6296 511974128 511974248 8.820000e-19 106.0
70 TraesCS6A01G217400 chr5D 90.741 54 3 1 5258 5309 431890034 431890087 3.220000e-08 71.3
71 TraesCS6A01G217400 chr5D 90.741 54 3 1 5258 5309 433515033 433514980 3.220000e-08 71.3
72 TraesCS6A01G217400 chr5B 83.468 248 34 5 6168 6411 40995455 40995699 2.330000e-54 224.0
73 TraesCS6A01G217400 chr5B 91.275 149 13 0 1001 1149 689858174 689858026 3.040000e-48 204.0
74 TraesCS6A01G217400 chr5B 78.750 240 43 7 6169 6406 648685497 648685264 3.100000e-33 154.0
75 TraesCS6A01G217400 chr5B 76.522 230 48 6 6183 6409 477356173 477356399 3.150000e-23 121.0
76 TraesCS6A01G217400 chr4D 87.166 187 20 4 6226 6411 95338498 95338681 6.530000e-50 209.0
77 TraesCS6A01G217400 chr4D 95.652 46 1 1 5257 5302 220369260 220369304 8.940000e-09 73.1
78 TraesCS6A01G217400 chr4D 90.566 53 3 2 5244 5296 19395060 19395010 1.160000e-07 69.4
79 TraesCS6A01G217400 chr1B 83.568 213 28 7 6181 6390 92596807 92597015 6.580000e-45 193.0
80 TraesCS6A01G217400 chr1B 93.458 107 6 1 20 125 503670085 503669979 2.400000e-34 158.0
81 TraesCS6A01G217400 chr3B 91.870 123 7 2 2 122 752683052 752682931 1.110000e-37 169.0
82 TraesCS6A01G217400 chr3B 92.982 57 3 1 5257 5312 423791628 423791572 1.490000e-11 82.4
83 TraesCS6A01G217400 chr1D 92.920 113 4 3 17 127 450216679 450216789 1.860000e-35 161.0
84 TraesCS6A01G217400 chr1D 79.866 149 27 3 2735 2882 300722351 300722497 8.820000e-19 106.0
85 TraesCS6A01G217400 chr1D 96.154 52 2 0 5255 5306 307349242 307349191 1.150000e-12 86.1
86 TraesCS6A01G217400 chr1D 93.750 48 3 0 5254 5301 326480031 326479984 8.940000e-09 73.1
87 TraesCS6A01G217400 chr1D 97.436 39 1 0 5258 5296 251707229 251707267 4.160000e-07 67.6
88 TraesCS6A01G217400 chr1D 93.182 44 3 0 5255 5298 212503064 212503021 1.500000e-06 65.8
89 TraesCS6A01G217400 chr1D 95.122 41 1 1 5258 5297 307349155 307349195 5.380000e-06 63.9
90 TraesCS6A01G217400 chr1D 91.304 46 2 2 5254 5298 372148140 372148096 1.940000e-05 62.1
91 TraesCS6A01G217400 chr5A 93.519 108 4 2 20 125 376346871 376346765 2.400000e-34 158.0
92 TraesCS6A01G217400 chr2D 93.519 108 4 2 20 125 517572575 517572469 2.400000e-34 158.0
93 TraesCS6A01G217400 chr2D 79.149 235 42 5 6176 6407 629482022 629482252 8.630000e-34 156.0
94 TraesCS6A01G217400 chr4B 92.308 52 3 1 5252 5303 633620870 633620820 8.940000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G217400 chr6A 400114377 400120806 6429 True 11875.000000 11875 100.000000 1 6430 1 chr6A.!!$R1 6429
1 TraesCS6A01G217400 chr6D 277663645 277669795 6150 True 2256.250000 3535 94.606750 120 6184 4 chr6D.!!$R5 6064
2 TraesCS6A01G217400 chr6B 439391830 439398386 6556 True 1224.285714 2983 93.528143 121 6184 7 chr6B.!!$R1 6063

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
753 804 0.035820 GGCCACGTCTATTTGGACCA 60.036 55.0 0.00 0.00 34.39 4.02 F
1454 1507 0.032130 TTGAGTGCTCGTGTGAGGTC 59.968 55.0 0.00 0.00 42.79 3.85 F
3063 3214 0.469917 ACCACACTGGAGTTGTCTGG 59.530 55.0 0.00 0.00 40.96 3.86 F
3126 3278 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.0 12.44 8.34 40.80 4.35 F
3128 3280 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.0 12.44 0.00 40.80 3.16 F
3129 3281 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.0 12.44 0.00 40.80 3.33 F
3196 3348 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.0 0.00 0.00 37.28 3.67 F
3394 3546 0.516877 GCTACGCAATCAACAGCACA 59.483 50.0 0.00 0.00 32.46 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1835 1898 2.269023 TGGATTCAGAAGGGAAGCTCA 58.731 47.619 0.0 0.0 33.82 4.26 R
3120 3272 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.0 0.0 44.78 4.85 R
4961 5213 2.229062 CGGCTCCTCGAATCATAGCTAA 59.771 50.000 0.0 0.0 33.67 3.09 R
5091 5343 6.520272 ACTAATAGCAAGAGATAGCAACAGG 58.480 40.000 0.0 0.0 0.00 4.00 R
5114 5366 8.193250 TCAGTTGACTTGTTTTTGTCTAGTAC 57.807 34.615 0.0 0.0 34.57 2.73 R
5348 5618 2.216488 CACTATGTCGCACGCTATTGAC 59.784 50.000 0.0 0.0 0.00 3.18 R
5390 5660 2.599082 GCAGAGACACCGAAATAAGTCG 59.401 50.000 0.0 0.0 40.77 4.18 R
5494 5764 0.508641 CTAATATGTCGCACGCCTGC 59.491 55.000 0.0 0.0 40.38 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 9.384764 AGAGTATAGTTTCACTTATTTTGCTCC 57.615 33.333 0.00 0.00 0.00 4.70
66 67 8.197988 AGTATAGTTTCACTTATTTTGCTCCG 57.802 34.615 0.00 0.00 0.00 4.63
67 68 7.822822 AGTATAGTTTCACTTATTTTGCTCCGT 59.177 33.333 0.00 0.00 0.00 4.69
68 69 9.090692 GTATAGTTTCACTTATTTTGCTCCGTA 57.909 33.333 0.00 0.00 0.00 4.02
69 70 8.732746 ATAGTTTCACTTATTTTGCTCCGTAT 57.267 30.769 0.00 0.00 0.00 3.06
70 71 6.842163 AGTTTCACTTATTTTGCTCCGTATG 58.158 36.000 0.00 0.00 0.00 2.39
71 72 6.430000 AGTTTCACTTATTTTGCTCCGTATGT 59.570 34.615 0.00 0.00 0.00 2.29
72 73 6.417191 TTCACTTATTTTGCTCCGTATGTC 57.583 37.500 0.00 0.00 0.00 3.06
73 74 4.565166 TCACTTATTTTGCTCCGTATGTCG 59.435 41.667 0.00 0.00 39.52 4.35
87 88 5.624344 CGTATGTCGGTATAGTGGAATCT 57.376 43.478 0.00 0.00 35.71 2.40
88 89 5.629097 CGTATGTCGGTATAGTGGAATCTC 58.371 45.833 0.00 0.00 35.71 2.75
89 90 5.411977 CGTATGTCGGTATAGTGGAATCTCT 59.588 44.000 0.00 0.00 35.71 3.10
90 91 5.968528 ATGTCGGTATAGTGGAATCTCTC 57.031 43.478 0.00 0.00 0.00 3.20
91 92 4.142790 TGTCGGTATAGTGGAATCTCTCC 58.857 47.826 0.00 0.00 45.64 3.71
112 113 9.250624 CTCTCCAAAGACTTATATTTAGGAACG 57.749 37.037 0.00 0.00 0.00 3.95
113 114 8.202137 TCTCCAAAGACTTATATTTAGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
114 115 8.081517 TCCAAAGACTTATATTTAGGAACGGA 57.918 34.615 0.00 0.00 0.00 4.69
115 116 8.202137 TCCAAAGACTTATATTTAGGAACGGAG 58.798 37.037 0.00 0.00 0.00 4.63
116 117 7.441458 CCAAAGACTTATATTTAGGAACGGAGG 59.559 40.741 0.00 0.00 0.00 4.30
117 118 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
118 119 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
212 213 2.028476 TCATCTAACTCCCACACCGTTG 60.028 50.000 0.00 0.00 0.00 4.10
228 229 5.880332 ACACCGTTGTATTTTATGCTGAGAT 59.120 36.000 0.00 0.00 32.60 2.75
253 254 5.367945 TGGGTATAGGTGTGAATCCTTTC 57.632 43.478 0.00 0.00 36.60 2.62
254 255 5.036916 TGGGTATAGGTGTGAATCCTTTCT 58.963 41.667 0.00 0.00 36.60 2.52
255 256 5.130477 TGGGTATAGGTGTGAATCCTTTCTC 59.870 44.000 0.00 0.00 36.60 2.87
256 257 5.367060 GGGTATAGGTGTGAATCCTTTCTCT 59.633 44.000 0.00 0.00 36.60 3.10
257 258 6.463190 GGGTATAGGTGTGAATCCTTTCTCTC 60.463 46.154 0.00 0.00 36.60 3.20
258 259 6.325286 GGTATAGGTGTGAATCCTTTCTCTCT 59.675 42.308 0.00 0.00 36.60 3.10
259 260 6.882768 ATAGGTGTGAATCCTTTCTCTCTT 57.117 37.500 0.00 0.00 36.60 2.85
260 261 5.574970 AGGTGTGAATCCTTTCTCTCTTT 57.425 39.130 0.00 0.00 32.78 2.52
293 295 5.514204 CGAAATTCCAACTACAGTACTACGG 59.486 44.000 0.00 0.00 0.00 4.02
296 298 3.156293 TCCAACTACAGTACTACGGCAA 58.844 45.455 0.00 0.00 0.00 4.52
299 301 4.933400 CCAACTACAGTACTACGGCAAAAT 59.067 41.667 0.00 0.00 0.00 1.82
317 319 5.007136 GCAAAATCAAACCGAATGGACAAAA 59.993 36.000 0.00 0.00 39.21 2.44
412 415 6.871562 CATTCGATGCTCTTAACACTACATC 58.128 40.000 0.00 0.00 0.00 3.06
526 529 3.515602 AATCAGAGGCAAAAGTCCACT 57.484 42.857 0.00 0.00 0.00 4.00
527 530 2.550830 TCAGAGGCAAAAGTCCACTC 57.449 50.000 0.00 0.00 0.00 3.51
567 575 4.607293 CATCGATGGAGATAGGGAAACA 57.393 45.455 17.96 0.00 0.00 2.83
569 577 5.555017 CATCGATGGAGATAGGGAAACAAT 58.445 41.667 17.96 0.00 0.00 2.71
753 804 0.035820 GGCCACGTCTATTTGGACCA 60.036 55.000 0.00 0.00 34.39 4.02
761 812 3.369471 CGTCTATTTGGACCATGTGGACT 60.369 47.826 16.08 0.00 38.94 3.85
762 813 4.192317 GTCTATTTGGACCATGTGGACTC 58.808 47.826 5.96 0.00 38.94 3.36
763 814 4.080863 GTCTATTTGGACCATGTGGACTCT 60.081 45.833 5.96 0.00 38.94 3.24
764 815 3.814504 ATTTGGACCATGTGGACTCTT 57.185 42.857 5.96 0.00 38.94 2.85
765 816 2.859165 TTGGACCATGTGGACTCTTC 57.141 50.000 5.96 0.00 38.94 2.87
766 817 2.030027 TGGACCATGTGGACTCTTCT 57.970 50.000 5.96 0.00 38.94 2.85
767 818 3.184382 TGGACCATGTGGACTCTTCTA 57.816 47.619 5.96 0.00 38.94 2.10
768 819 3.516586 TGGACCATGTGGACTCTTCTAA 58.483 45.455 5.96 0.00 38.94 2.10
769 820 3.907474 TGGACCATGTGGACTCTTCTAAA 59.093 43.478 5.96 0.00 38.94 1.85
770 821 4.349636 TGGACCATGTGGACTCTTCTAAAA 59.650 41.667 5.96 0.00 38.94 1.52
771 822 5.163141 TGGACCATGTGGACTCTTCTAAAAA 60.163 40.000 5.96 0.00 38.94 1.94
787 838 3.852558 AAAAATTGGACCGTGGGGA 57.147 47.368 0.00 0.00 36.97 4.81
788 839 1.334160 AAAAATTGGACCGTGGGGAC 58.666 50.000 0.00 0.00 36.97 4.46
877 928 1.630369 CATCCAGGACCTTCCAGAACA 59.370 52.381 0.00 0.00 39.61 3.18
900 951 0.673956 GGTTCCAGCTTCCTTCGTCC 60.674 60.000 0.00 0.00 0.00 4.79
905 956 1.475403 CAGCTTCCTTCGTCCTCCTA 58.525 55.000 0.00 0.00 0.00 2.94
908 959 1.826096 GCTTCCTTCGTCCTCCTACTT 59.174 52.381 0.00 0.00 0.00 2.24
937 988 0.319083 TATCACGCCACCGAAACAGT 59.681 50.000 0.00 0.00 38.29 3.55
942 993 1.070786 GCCACCGAAACAGTCTCCA 59.929 57.895 0.00 0.00 0.00 3.86
1023 1074 2.439156 GCCATCCGGAAGCAGCTT 60.439 61.111 21.49 7.60 0.00 3.74
1163 1214 0.319641 ACCGTGCGTTTCCTCTTCTC 60.320 55.000 0.00 0.00 0.00 2.87
1165 1216 0.319555 CGTGCGTTTCCTCTTCTCCA 60.320 55.000 0.00 0.00 0.00 3.86
1167 1218 0.320771 TGCGTTTCCTCTTCTCCAGC 60.321 55.000 0.00 0.00 0.00 4.85
1170 1221 1.270839 CGTTTCCTCTTCTCCAGCCAA 60.271 52.381 0.00 0.00 0.00 4.52
1236 1289 7.388290 TCGCTGATATGTTTTTGTTTTGTTC 57.612 32.000 0.00 0.00 0.00 3.18
1280 1333 1.014564 GTCCGTGTCCTAAGCTGCAC 61.015 60.000 1.02 0.00 0.00 4.57
1283 1336 1.073216 CGTGTCCTAAGCTGCACTCG 61.073 60.000 1.02 0.00 0.00 4.18
1415 1468 7.037586 TCAGTTTATTTCCCCTTCTCATAGTGT 60.038 37.037 0.00 0.00 0.00 3.55
1454 1507 0.032130 TTGAGTGCTCGTGTGAGGTC 59.968 55.000 0.00 0.00 42.79 3.85
1475 1528 5.148502 GTCAGGGTAGAATAGATTGGAGGA 58.851 45.833 0.00 0.00 0.00 3.71
1480 1533 6.327887 AGGGTAGAATAGATTGGAGGAACTTC 59.672 42.308 0.00 0.00 41.55 3.01
1492 1545 3.604582 GAGGAACTTCTGATTGTCTGGG 58.395 50.000 0.00 0.00 41.55 4.45
1626 1679 9.473007 TGACCTCCATATTGATTAAAATGAACA 57.527 29.630 0.00 0.00 0.00 3.18
1705 1762 1.103987 TTGCAAAAGTAGGGCGTGCA 61.104 50.000 0.00 0.00 43.12 4.57
1713 1770 0.878416 GTAGGGCGTGCATTGTTTCA 59.122 50.000 0.00 0.00 0.00 2.69
1751 1814 4.696877 AGATTGCTGTTGATCGACAATTCA 59.303 37.500 16.60 11.57 40.76 2.57
1834 1897 8.978874 TGTGAAGCATTAGGTTTGTGATATAT 57.021 30.769 0.00 0.00 35.19 0.86
1835 1898 9.407380 TGTGAAGCATTAGGTTTGTGATATATT 57.593 29.630 0.00 0.00 35.19 1.28
1837 1900 9.625747 TGAAGCATTAGGTTTGTGATATATTGA 57.374 29.630 0.00 0.00 35.19 2.57
1845 1908 6.064717 GGTTTGTGATATATTGAGCTTCCCT 58.935 40.000 0.00 0.00 0.00 4.20
1875 1938 9.865321 GAATCCAACCATGATATTTGATAATGG 57.135 33.333 0.00 0.03 42.88 3.16
1909 1972 7.909518 TGTTAGTACTGCAACCTTTCCTAATA 58.090 34.615 5.39 0.00 0.00 0.98
1910 1973 8.377034 TGTTAGTACTGCAACCTTTCCTAATAA 58.623 33.333 5.39 0.00 0.00 1.40
1911 1974 9.392259 GTTAGTACTGCAACCTTTCCTAATAAT 57.608 33.333 5.39 0.00 0.00 1.28
2102 2170 6.539649 TGTTGTTCTGATAAGTAACAGTGC 57.460 37.500 0.00 0.00 34.80 4.40
2396 2464 7.148306 GGTTACACAGGTACCTCATGTTAATTG 60.148 40.741 26.14 10.45 39.11 2.32
2456 2524 5.539574 TCATTGTGGAAACTGAATGGTGAAT 59.460 36.000 0.00 0.00 33.22 2.57
2485 2553 6.801539 TGTTTACTTGCAAATCCAGAGTAG 57.198 37.500 0.00 0.00 0.00 2.57
2558 2626 7.096884 AGACACTTTTGGTAAGTCCTTTTTC 57.903 36.000 0.00 0.00 37.07 2.29
2662 2730 2.746362 GTGCTCAGTTTCCTCTGGAATG 59.254 50.000 0.00 0.00 41.71 2.67
2748 2816 3.099141 TCCGTTCGGGTTTATTAGTCCT 58.901 45.455 11.37 0.00 37.00 3.85
2754 2822 3.382546 TCGGGTTTATTAGTCCTTCTCGG 59.617 47.826 0.00 0.00 0.00 4.63
2758 2826 5.990386 GGGTTTATTAGTCCTTCTCGGATTC 59.010 44.000 0.00 0.00 45.44 2.52
3063 3214 0.469917 ACCACACTGGAGTTGTCTGG 59.530 55.000 0.00 0.00 40.96 3.86
3097 3249 7.830099 ATAGCTGAATTTATTTGAAGGGGAG 57.170 36.000 0.00 0.00 0.00 4.30
3098 3250 4.403752 AGCTGAATTTATTTGAAGGGGAGC 59.596 41.667 0.00 0.00 0.00 4.70
3099 3251 4.442052 GCTGAATTTATTTGAAGGGGAGCC 60.442 45.833 0.00 0.00 0.00 4.70
3100 3252 4.946646 TGAATTTATTTGAAGGGGAGCCT 58.053 39.130 0.00 0.00 0.00 4.58
3101 3253 5.341169 TGAATTTATTTGAAGGGGAGCCTT 58.659 37.500 0.00 0.00 0.00 4.35
3102 3254 5.187576 TGAATTTATTTGAAGGGGAGCCTTG 59.812 40.000 0.00 0.00 0.00 3.61
3103 3255 2.826674 TATTTGAAGGGGAGCCTTGG 57.173 50.000 0.00 0.00 0.00 3.61
3104 3256 0.615827 ATTTGAAGGGGAGCCTTGGC 60.616 55.000 2.97 2.97 0.00 4.52
3105 3257 3.567579 TTGAAGGGGAGCCTTGGCG 62.568 63.158 5.95 0.00 0.00 5.69
3113 3265 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
3114 3266 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
3115 3267 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
3116 3268 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
3117 3269 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
3118 3270 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
3119 3271 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
3124 3276 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
3125 3277 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
3126 3278 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
3127 3279 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
3128 3280 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
3129 3281 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
3130 3282 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
3131 3283 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
3132 3284 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
3133 3285 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
3134 3286 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
3135 3287 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
3136 3288 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
3137 3289 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
3138 3290 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
3153 3305 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
3154 3306 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
3155 3307 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
3156 3308 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
3157 3309 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
3158 3310 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
3159 3311 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
3160 3312 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
3161 3313 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
3162 3314 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
3176 3328 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
3177 3329 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
3178 3330 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
3179 3331 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
3180 3332 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
3181 3333 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
3182 3334 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
3183 3335 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
3184 3336 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
3185 3337 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
3186 3338 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
3187 3339 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
3188 3340 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
3189 3341 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
3190 3342 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
3191 3343 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
3192 3344 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
3193 3345 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
3194 3346 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
3195 3347 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
3196 3348 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
3197 3349 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
3198 3350 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
3199 3351 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
3200 3352 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
3201 3353 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
3202 3354 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
3203 3355 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
3204 3356 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
3205 3357 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
3206 3358 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
3207 3359 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
3208 3360 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
3209 3361 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
3210 3362 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
3211 3363 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
3212 3364 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
3213 3365 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
3218 3370 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
3219 3371 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
3220 3372 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
3221 3373 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
3222 3374 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
3223 3375 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
3224 3376 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
3225 3377 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
3226 3378 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
3227 3379 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
3228 3380 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
3229 3381 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
3230 3382 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
3231 3383 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
3232 3384 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
3233 3385 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
3234 3386 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
3235 3387 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
3236 3388 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
3237 3389 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
3262 3414 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
3263 3415 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
3264 3416 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
3265 3417 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
3266 3418 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
3267 3419 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
3268 3420 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
3269 3421 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
3270 3422 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27
3271 3423 0.980231 TGCACCAGGTTGCCCTTTTT 60.980 50.000 10.46 0.00 42.25 1.94
3394 3546 0.516877 GCTACGCAATCAACAGCACA 59.483 50.000 0.00 0.00 32.46 4.57
3500 3652 2.045131 CCTGCAGCCTCCTTTGCTC 61.045 63.158 8.66 0.00 40.87 4.26
3503 3655 2.105466 GCAGCCTCCTTTGCTCGAG 61.105 63.158 8.45 8.45 36.81 4.04
3684 3837 6.444633 CATTTAAATCTATTGGAGCAGCTGG 58.555 40.000 17.12 0.00 0.00 4.85
3698 3932 2.149578 CAGCTGGCTAGATGTTATGGC 58.850 52.381 7.23 0.00 35.64 4.40
3728 3962 4.024387 CGTCTGCTTTAGTTGCCAAAGTAA 60.024 41.667 0.00 0.00 35.78 2.24
3746 3980 7.540055 CCAAAGTAACATTTCTCTTTCTGATGC 59.460 37.037 0.00 0.00 0.00 3.91
3842 4076 8.199176 TCACGTTCAAATTGTAAGTAACTCAA 57.801 30.769 0.00 0.00 0.00 3.02
3903 4137 3.104843 GCTAACTGCATGGAGACCTAG 57.895 52.381 22.24 17.07 42.31 3.02
3914 4148 5.703130 GCATGGAGACCTAGTTATTGGATTC 59.297 44.000 0.00 0.00 0.00 2.52
4166 4405 7.450634 TCATGAGTATAGTAGTGTATGGGGTTC 59.549 40.741 0.00 0.00 0.00 3.62
4328 4567 8.960591 CATAGATGTCTTGTCAAGGGTTTAATT 58.039 33.333 12.66 0.00 0.00 1.40
4331 4570 8.793592 AGATGTCTTGTCAAGGGTTTAATTAAC 58.206 33.333 12.66 0.43 35.94 2.01
4332 4571 8.706322 ATGTCTTGTCAAGGGTTTAATTAACT 57.294 30.769 12.66 0.00 36.93 2.24
4334 4573 8.410141 TGTCTTGTCAAGGGTTTAATTAACTTG 58.590 33.333 12.66 15.77 39.76 3.16
4335 4574 7.381408 GTCTTGTCAAGGGTTTAATTAACTTGC 59.619 37.037 12.66 13.42 38.64 4.01
4336 4575 6.716934 TGTCAAGGGTTTAATTAACTTGCA 57.283 33.333 16.57 14.97 38.64 4.08
4558 4809 3.364549 TGCTAACATGGCTGGCTTATTT 58.635 40.909 2.00 0.00 0.00 1.40
4675 4926 3.131400 AGAAAAACAAAAGGCGCAAGGTA 59.869 39.130 10.83 0.00 38.28 3.08
4742 4993 6.204882 GCTTTAAAGTCTCCTAACAGAGCAAA 59.795 38.462 16.38 0.00 33.66 3.68
5091 5343 5.596836 TTGAATTGTGCATATTCCTTCCC 57.403 39.130 17.02 0.00 32.29 3.97
5114 5366 5.931146 CCCTGTTGCTATCTCTTGCTATTAG 59.069 44.000 0.00 0.00 0.00 1.73
5219 5471 5.439721 TCAGCTCACTTGGTGCATATAAAT 58.560 37.500 0.00 0.00 38.46 1.40
5390 5660 2.602878 CAGCACTCATGAAATGCAACC 58.397 47.619 25.63 4.74 46.21 3.77
5474 5744 4.400567 GGCTTGCATTAGATTTTCTGAGGT 59.599 41.667 0.00 0.00 0.00 3.85
5475 5745 5.338365 GCTTGCATTAGATTTTCTGAGGTG 58.662 41.667 0.00 0.00 0.00 4.00
5476 5746 5.678107 GCTTGCATTAGATTTTCTGAGGTGG 60.678 44.000 0.00 0.00 0.00 4.61
5477 5747 4.272489 TGCATTAGATTTTCTGAGGTGGG 58.728 43.478 0.00 0.00 0.00 4.61
5478 5748 3.067320 GCATTAGATTTTCTGAGGTGGGC 59.933 47.826 0.00 0.00 0.00 5.36
5479 5749 4.272489 CATTAGATTTTCTGAGGTGGGCA 58.728 43.478 0.00 0.00 0.00 5.36
5481 5751 1.707427 AGATTTTCTGAGGTGGGCACT 59.293 47.619 0.00 0.00 0.00 4.40
5482 5752 2.912956 AGATTTTCTGAGGTGGGCACTA 59.087 45.455 0.00 0.00 0.00 2.74
5483 5753 2.859165 TTTTCTGAGGTGGGCACTAG 57.141 50.000 0.00 0.00 0.00 2.57
5484 5754 2.024176 TTTCTGAGGTGGGCACTAGA 57.976 50.000 0.00 0.00 0.00 2.43
5485 5755 2.254152 TTCTGAGGTGGGCACTAGAT 57.746 50.000 0.00 0.00 0.00 1.98
5486 5756 1.489481 TCTGAGGTGGGCACTAGATG 58.511 55.000 0.00 0.00 0.00 2.90
5495 5765 4.137879 CACTAGATGCAGGCAGGC 57.862 61.111 0.00 0.00 0.00 4.85
5658 6204 4.051922 TCTTTTCTCTGCGACAGAAAGAC 58.948 43.478 13.62 0.00 40.18 3.01
5688 6239 3.852578 AGGTATCCATCCTTGAAAGTGGT 59.147 43.478 1.03 0.00 33.47 4.16
5846 6397 6.206829 GCAAGAAGTACCTCTATTTTTGGTGT 59.793 38.462 0.00 0.00 35.48 4.16
5924 6477 3.202906 TGAAGTTTCTTCCACCTTGTCG 58.797 45.455 6.98 0.00 0.00 4.35
5957 6519 5.241662 ACTCTCAAGGTACTGATTTTCTGC 58.758 41.667 0.00 0.00 40.86 4.26
5970 6532 4.949856 TGATTTTCTGCTCAATAGGTTCCC 59.050 41.667 0.00 0.00 0.00 3.97
5978 6540 1.979308 TCAATAGGTTCCCGTTGTCCA 59.021 47.619 0.00 0.00 0.00 4.02
5979 6541 2.081462 CAATAGGTTCCCGTTGTCCAC 58.919 52.381 0.00 0.00 0.00 4.02
5980 6542 1.652947 ATAGGTTCCCGTTGTCCACT 58.347 50.000 0.00 0.00 0.00 4.00
5981 6543 0.971386 TAGGTTCCCGTTGTCCACTC 59.029 55.000 0.00 0.00 0.00 3.51
5982 6544 0.763223 AGGTTCCCGTTGTCCACTCT 60.763 55.000 0.00 0.00 0.00 3.24
5983 6545 0.971386 GGTTCCCGTTGTCCACTCTA 59.029 55.000 0.00 0.00 0.00 2.43
5984 6546 1.553704 GGTTCCCGTTGTCCACTCTAT 59.446 52.381 0.00 0.00 0.00 1.98
5986 6548 1.100510 TCCCGTTGTCCACTCTATCG 58.899 55.000 0.00 0.00 0.00 2.92
6043 6845 6.042208 TGGATACACCCCCTTTTAAAAAGTTG 59.958 38.462 1.66 0.00 46.17 3.16
6090 6892 8.606830 AGGGTTGAGATTAGAACATACTCTTTT 58.393 33.333 0.00 0.00 0.00 2.27
6142 6958 7.997107 TTGTCTGTGATTACCATCGTAATAC 57.003 36.000 0.00 0.00 43.71 1.89
6172 6988 3.586470 TTCAAACCAGGTCTAGCCAAA 57.414 42.857 0.00 0.00 40.61 3.28
6180 6996 3.769844 CCAGGTCTAGCCAAAGACTTAGA 59.230 47.826 10.31 0.00 44.42 2.10
6181 6997 4.142049 CCAGGTCTAGCCAAAGACTTAGAG 60.142 50.000 10.31 0.00 44.42 2.43
6182 6998 3.449377 AGGTCTAGCCAAAGACTTAGAGC 59.551 47.826 10.31 6.15 44.42 4.09
6183 6999 3.195825 GGTCTAGCCAAAGACTTAGAGCA 59.804 47.826 10.31 0.00 44.42 4.26
6184 7000 4.141824 GGTCTAGCCAAAGACTTAGAGCAT 60.142 45.833 10.31 0.00 44.42 3.79
6185 7001 5.047188 GTCTAGCCAAAGACTTAGAGCATC 58.953 45.833 4.63 0.00 42.21 3.91
6186 7002 5.163457 GTCTAGCCAAAGACTTAGAGCATCT 60.163 44.000 4.63 0.00 44.92 2.90
6187 7003 6.954837 GTCTAGCCAAAGACTTAGAGCATCTC 60.955 46.154 4.63 0.00 43.24 2.75
6188 7004 9.759756 GTCTAGCCAAAGACTTAGAGCATCTCC 62.760 48.148 4.63 0.00 43.24 3.71
6197 7013 2.892305 GAGCATCTCCATCCGTTCG 58.108 57.895 0.00 0.00 0.00 3.95
6198 7014 0.598680 GAGCATCTCCATCCGTTCGG 60.599 60.000 4.74 4.74 0.00 4.30
6199 7015 1.144057 GCATCTCCATCCGTTCGGT 59.856 57.895 11.04 0.00 0.00 4.69
6200 7016 0.876342 GCATCTCCATCCGTTCGGTC 60.876 60.000 11.04 0.00 0.00 4.79
6201 7017 0.747255 CATCTCCATCCGTTCGGTCT 59.253 55.000 11.04 0.00 0.00 3.85
6202 7018 1.137086 CATCTCCATCCGTTCGGTCTT 59.863 52.381 11.04 0.00 0.00 3.01
6203 7019 0.815734 TCTCCATCCGTTCGGTCTTC 59.184 55.000 11.04 0.00 0.00 2.87
6204 7020 0.179108 CTCCATCCGTTCGGTCTTCC 60.179 60.000 11.04 0.00 0.00 3.46
6205 7021 0.901114 TCCATCCGTTCGGTCTTCCA 60.901 55.000 11.04 0.00 0.00 3.53
6206 7022 0.460284 CCATCCGTTCGGTCTTCCAG 60.460 60.000 11.04 0.00 0.00 3.86
6207 7023 0.460284 CATCCGTTCGGTCTTCCAGG 60.460 60.000 11.04 0.00 0.00 4.45
6208 7024 1.614241 ATCCGTTCGGTCTTCCAGGG 61.614 60.000 11.04 0.00 0.00 4.45
6209 7025 2.434359 CGTTCGGTCTTCCAGGGC 60.434 66.667 0.00 0.00 0.00 5.19
6210 7026 2.434359 GTTCGGTCTTCCAGGGCG 60.434 66.667 0.00 0.00 0.00 6.13
6211 7027 4.388499 TTCGGTCTTCCAGGGCGC 62.388 66.667 0.00 0.00 0.00 6.53
6215 7031 4.388499 GTCTTCCAGGGCGCCGAA 62.388 66.667 22.54 17.32 0.00 4.30
6216 7032 3.632080 TCTTCCAGGGCGCCGAAA 61.632 61.111 22.54 10.65 0.00 3.46
6217 7033 2.671619 CTTCCAGGGCGCCGAAAA 60.672 61.111 22.54 11.02 0.00 2.29
6218 7034 2.203365 TTCCAGGGCGCCGAAAAA 60.203 55.556 22.54 9.67 0.00 1.94
6219 7035 2.200170 CTTCCAGGGCGCCGAAAAAG 62.200 60.000 22.54 17.07 0.00 2.27
6220 7036 2.671619 CCAGGGCGCCGAAAAAGA 60.672 61.111 22.54 0.00 0.00 2.52
6221 7037 2.690778 CCAGGGCGCCGAAAAAGAG 61.691 63.158 22.54 3.24 0.00 2.85
6222 7038 1.966451 CAGGGCGCCGAAAAAGAGT 60.966 57.895 22.54 0.00 0.00 3.24
6223 7039 1.671379 AGGGCGCCGAAAAAGAGTC 60.671 57.895 22.54 1.49 0.00 3.36
6224 7040 2.474712 GGCGCCGAAAAAGAGTCG 59.525 61.111 12.58 0.00 38.24 4.18
6225 7041 2.202184 GCGCCGAAAAAGAGTCGC 60.202 61.111 0.00 0.00 37.18 5.19
6226 7042 2.474712 CGCCGAAAAAGAGTCGCC 59.525 61.111 0.00 0.00 37.18 5.54
6227 7043 2.027625 CGCCGAAAAAGAGTCGCCT 61.028 57.895 0.00 0.00 37.18 5.52
6228 7044 1.497722 GCCGAAAAAGAGTCGCCTG 59.502 57.895 0.00 0.00 37.18 4.85
6229 7045 0.949105 GCCGAAAAAGAGTCGCCTGA 60.949 55.000 0.00 0.00 37.18 3.86
6230 7046 1.508632 CCGAAAAAGAGTCGCCTGAA 58.491 50.000 0.00 0.00 37.18 3.02
6231 7047 1.461127 CCGAAAAAGAGTCGCCTGAAG 59.539 52.381 0.00 0.00 37.18 3.02
6232 7048 1.461127 CGAAAAAGAGTCGCCTGAAGG 59.539 52.381 0.00 0.00 38.53 3.46
6250 7066 3.309675 CGAACCGGCGCTAGATTG 58.690 61.111 7.64 0.00 0.00 2.67
6251 7067 2.237751 CGAACCGGCGCTAGATTGG 61.238 63.158 7.64 2.50 0.00 3.16
6252 7068 2.513897 AACCGGCGCTAGATTGGC 60.514 61.111 7.64 0.00 0.00 4.52
6258 7074 3.630148 CGCTAGATTGGCGCGTGG 61.630 66.667 8.43 0.00 45.83 4.94
6259 7075 3.272334 GCTAGATTGGCGCGTGGG 61.272 66.667 8.43 0.00 0.00 4.61
6260 7076 2.588877 CTAGATTGGCGCGTGGGG 60.589 66.667 8.43 0.00 0.00 4.96
6261 7077 4.169696 TAGATTGGCGCGTGGGGG 62.170 66.667 8.43 0.00 0.00 5.40
6269 7085 4.742201 CGCGTGGGGGTGACTCTG 62.742 72.222 0.00 0.00 0.00 3.35
6271 7087 3.314331 CGTGGGGGTGACTCTGCT 61.314 66.667 0.00 0.00 0.00 4.24
6272 7088 2.665603 GTGGGGGTGACTCTGCTC 59.334 66.667 0.00 0.00 0.00 4.26
6273 7089 2.607750 TGGGGGTGACTCTGCTCC 60.608 66.667 0.00 0.00 0.00 4.70
6274 7090 3.403558 GGGGGTGACTCTGCTCCC 61.404 72.222 0.00 0.00 40.16 4.30
6275 7091 2.607750 GGGGTGACTCTGCTCCCA 60.608 66.667 0.00 0.00 42.15 4.37
6276 7092 2.664081 GGGGTGACTCTGCTCCCAG 61.664 68.421 0.00 0.00 42.15 4.45
6277 7093 2.664081 GGGTGACTCTGCTCCCAGG 61.664 68.421 0.00 0.00 40.50 4.45
6278 7094 2.267324 GTGACTCTGCTCCCAGGC 59.733 66.667 0.00 0.00 39.61 4.85
6279 7095 3.385384 TGACTCTGCTCCCAGGCG 61.385 66.667 0.00 0.00 39.61 5.52
6280 7096 3.386237 GACTCTGCTCCCAGGCGT 61.386 66.667 0.00 0.00 39.61 5.68
6281 7097 3.363844 GACTCTGCTCCCAGGCGTC 62.364 68.421 0.00 0.00 39.61 5.19
6282 7098 4.504916 CTCTGCTCCCAGGCGTCG 62.505 72.222 0.00 0.00 39.61 5.12
6314 7130 3.518068 GCGGGCTTGGCGCTATTT 61.518 61.111 7.64 0.00 39.38 1.40
6315 7131 2.715624 CGGGCTTGGCGCTATTTC 59.284 61.111 7.64 0.00 39.38 2.17
6316 7132 2.112198 CGGGCTTGGCGCTATTTCA 61.112 57.895 7.64 0.00 39.38 2.69
6317 7133 1.447317 CGGGCTTGGCGCTATTTCAT 61.447 55.000 7.64 0.00 39.38 2.57
6318 7134 1.604604 GGGCTTGGCGCTATTTCATA 58.395 50.000 7.64 0.00 38.48 2.15
6319 7135 1.266989 GGGCTTGGCGCTATTTCATAC 59.733 52.381 7.64 0.00 38.48 2.39
6320 7136 1.946768 GGCTTGGCGCTATTTCATACA 59.053 47.619 7.64 0.00 39.13 2.29
6321 7137 2.357637 GGCTTGGCGCTATTTCATACAA 59.642 45.455 7.64 0.00 39.13 2.41
6322 7138 3.004734 GGCTTGGCGCTATTTCATACAAT 59.995 43.478 7.64 0.00 39.13 2.71
6323 7139 4.499696 GGCTTGGCGCTATTTCATACAATT 60.500 41.667 7.64 0.00 39.13 2.32
6324 7140 5.278266 GGCTTGGCGCTATTTCATACAATTA 60.278 40.000 7.64 0.00 39.13 1.40
6325 7141 5.853282 GCTTGGCGCTATTTCATACAATTAG 59.147 40.000 7.64 0.00 35.14 1.73
6326 7142 6.513393 GCTTGGCGCTATTTCATACAATTAGT 60.513 38.462 7.64 0.00 35.14 2.24
6327 7143 6.935741 TGGCGCTATTTCATACAATTAGTT 57.064 33.333 7.64 0.00 0.00 2.24
6328 7144 6.724263 TGGCGCTATTTCATACAATTAGTTG 58.276 36.000 7.64 0.00 41.20 3.16
6329 7145 5.625311 GGCGCTATTTCATACAATTAGTTGC 59.375 40.000 7.64 0.00 38.96 4.17
6330 7146 6.198687 GCGCTATTTCATACAATTAGTTGCA 58.801 36.000 0.00 0.00 38.96 4.08
6331 7147 6.690957 GCGCTATTTCATACAATTAGTTGCAA 59.309 34.615 0.00 0.00 38.96 4.08
6332 7148 7.219917 GCGCTATTTCATACAATTAGTTGCAAA 59.780 33.333 0.00 0.00 38.96 3.68
6344 7160 2.475200 GTTGCAAACTCAGCGAACTT 57.525 45.000 0.00 0.00 45.32 2.66
6345 7161 2.797491 GTTGCAAACTCAGCGAACTTT 58.203 42.857 0.00 0.00 45.32 2.66
6346 7162 2.755836 TGCAAACTCAGCGAACTTTC 57.244 45.000 0.00 0.00 33.85 2.62
6347 7163 2.013400 TGCAAACTCAGCGAACTTTCA 58.987 42.857 0.00 0.00 33.85 2.69
6348 7164 2.223249 TGCAAACTCAGCGAACTTTCAC 60.223 45.455 0.00 0.00 33.85 3.18
6349 7165 2.629022 CAAACTCAGCGAACTTTCACG 58.371 47.619 0.00 0.00 0.00 4.35
6350 7166 2.218953 AACTCAGCGAACTTTCACGA 57.781 45.000 0.00 0.00 0.00 4.35
6351 7167 2.218953 ACTCAGCGAACTTTCACGAA 57.781 45.000 0.00 0.00 0.00 3.85
6352 7168 1.859080 ACTCAGCGAACTTTCACGAAC 59.141 47.619 0.00 0.00 0.00 3.95
6353 7169 2.128035 CTCAGCGAACTTTCACGAACT 58.872 47.619 0.00 0.00 0.00 3.01
6354 7170 2.124903 TCAGCGAACTTTCACGAACTC 58.875 47.619 0.00 0.00 0.00 3.01
6355 7171 1.858458 CAGCGAACTTTCACGAACTCA 59.142 47.619 0.00 0.00 0.00 3.41
6356 7172 2.097202 CAGCGAACTTTCACGAACTCAG 60.097 50.000 0.00 0.00 0.00 3.35
6357 7173 1.397315 GCGAACTTTCACGAACTCAGC 60.397 52.381 0.00 0.00 0.00 4.26
6358 7174 1.136884 CGAACTTTCACGAACTCAGCG 60.137 52.381 0.00 0.00 0.00 5.18
6359 7175 2.124903 GAACTTTCACGAACTCAGCGA 58.875 47.619 0.00 0.00 0.00 4.93
6360 7176 2.218953 ACTTTCACGAACTCAGCGAA 57.781 45.000 0.00 0.00 0.00 4.70
6361 7177 2.546778 ACTTTCACGAACTCAGCGAAA 58.453 42.857 0.00 0.00 0.00 3.46
6362 7178 3.131396 ACTTTCACGAACTCAGCGAAAT 58.869 40.909 0.00 0.00 0.00 2.17
6363 7179 3.560068 ACTTTCACGAACTCAGCGAAATT 59.440 39.130 0.00 0.00 0.00 1.82
6364 7180 4.035208 ACTTTCACGAACTCAGCGAAATTT 59.965 37.500 0.00 0.00 0.00 1.82
6365 7181 3.788434 TCACGAACTCAGCGAAATTTC 57.212 42.857 8.20 8.20 0.00 2.17
6366 7182 3.127589 TCACGAACTCAGCGAAATTTCA 58.872 40.909 17.99 0.00 0.00 2.69
6367 7183 3.745975 TCACGAACTCAGCGAAATTTCAT 59.254 39.130 17.99 3.17 0.00 2.57
6368 7184 4.213270 TCACGAACTCAGCGAAATTTCATT 59.787 37.500 17.99 2.52 0.00 2.57
6369 7185 4.319115 CACGAACTCAGCGAAATTTCATTG 59.681 41.667 17.99 14.09 0.00 2.82
6370 7186 4.213270 ACGAACTCAGCGAAATTTCATTGA 59.787 37.500 17.99 17.05 0.00 2.57
6371 7187 5.146460 CGAACTCAGCGAAATTTCATTGAA 58.854 37.500 17.99 0.00 0.00 2.69
6372 7188 5.624900 CGAACTCAGCGAAATTTCATTGAAA 59.375 36.000 17.99 13.88 35.94 2.69
6373 7189 6.306356 CGAACTCAGCGAAATTTCATTGAAAT 59.694 34.615 17.03 17.03 43.07 2.17
6406 7222 6.984740 AAACATAAACACATGCAAACTACG 57.015 33.333 0.00 0.00 0.00 3.51
6407 7223 4.472286 ACATAAACACATGCAAACTACGC 58.528 39.130 0.00 0.00 0.00 4.42
6408 7224 2.415697 AAACACATGCAAACTACGCC 57.584 45.000 0.00 0.00 0.00 5.68
6409 7225 1.604604 AACACATGCAAACTACGCCT 58.395 45.000 0.00 0.00 0.00 5.52
6410 7226 2.465860 ACACATGCAAACTACGCCTA 57.534 45.000 0.00 0.00 0.00 3.93
6411 7227 2.346803 ACACATGCAAACTACGCCTAG 58.653 47.619 0.00 0.00 0.00 3.02
6412 7228 1.665679 CACATGCAAACTACGCCTAGG 59.334 52.381 3.67 3.67 0.00 3.02
6413 7229 1.553248 ACATGCAAACTACGCCTAGGA 59.447 47.619 14.75 0.00 0.00 2.94
6414 7230 2.027561 ACATGCAAACTACGCCTAGGAA 60.028 45.455 14.75 0.00 0.00 3.36
6415 7231 2.088950 TGCAAACTACGCCTAGGAAC 57.911 50.000 14.75 0.00 0.00 3.62
6416 7232 1.621814 TGCAAACTACGCCTAGGAACT 59.378 47.619 14.75 0.00 46.37 3.01
6417 7233 2.000447 GCAAACTACGCCTAGGAACTG 59.000 52.381 14.75 0.68 41.52 3.16
6418 7234 2.612221 GCAAACTACGCCTAGGAACTGT 60.612 50.000 14.75 7.29 41.52 3.55
6419 7235 2.993899 CAAACTACGCCTAGGAACTGTG 59.006 50.000 14.75 0.00 41.52 3.66
6420 7236 0.531200 ACTACGCCTAGGAACTGTGC 59.469 55.000 14.75 0.00 41.52 4.57
6421 7237 0.179108 CTACGCCTAGGAACTGTGCC 60.179 60.000 14.75 0.00 41.52 5.01
6422 7238 1.610554 TACGCCTAGGAACTGTGCCC 61.611 60.000 14.75 0.00 41.52 5.36
6423 7239 2.125106 GCCTAGGAACTGTGCCCG 60.125 66.667 14.75 0.00 41.52 6.13
6424 7240 2.955881 GCCTAGGAACTGTGCCCGT 61.956 63.158 14.75 0.00 41.52 5.28
6425 7241 1.079127 CCTAGGAACTGTGCCCGTG 60.079 63.158 1.05 0.00 41.52 4.94
6426 7242 1.671742 CTAGGAACTGTGCCCGTGT 59.328 57.895 0.00 0.00 41.52 4.49
6427 7243 0.389948 CTAGGAACTGTGCCCGTGTC 60.390 60.000 0.00 0.00 41.52 3.67
6428 7244 1.823169 TAGGAACTGTGCCCGTGTCC 61.823 60.000 0.00 0.00 41.52 4.02
6429 7245 2.110213 GAACTGTGCCCGTGTCCA 59.890 61.111 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 6.608610 ACATACGGAGCAAAATAAGTGAAAC 58.391 36.000 0.00 0.00 0.00 2.78
48 49 6.401688 CGACATACGGAGCAAAATAAGTGAAA 60.402 38.462 0.00 0.00 38.46 2.69
49 50 5.062934 CGACATACGGAGCAAAATAAGTGAA 59.937 40.000 0.00 0.00 38.46 3.18
50 51 4.565166 CGACATACGGAGCAAAATAAGTGA 59.435 41.667 0.00 0.00 38.46 3.41
51 52 4.822107 CGACATACGGAGCAAAATAAGTG 58.178 43.478 0.00 0.00 38.46 3.16
65 66 5.411977 AGAGATTCCACTATACCGACATACG 59.588 44.000 0.00 0.00 42.18 3.06
66 67 6.127952 GGAGAGATTCCACTATACCGACATAC 60.128 46.154 0.00 0.00 46.01 2.39
67 68 5.944599 GGAGAGATTCCACTATACCGACATA 59.055 44.000 0.00 0.00 46.01 2.29
68 69 4.767928 GGAGAGATTCCACTATACCGACAT 59.232 45.833 0.00 0.00 46.01 3.06
69 70 4.142790 GGAGAGATTCCACTATACCGACA 58.857 47.826 0.00 0.00 46.01 4.35
70 71 4.769859 GGAGAGATTCCACTATACCGAC 57.230 50.000 0.00 0.00 46.01 4.79
86 87 9.250624 CGTTCCTAAATATAAGTCTTTGGAGAG 57.749 37.037 0.00 0.00 31.07 3.20
87 88 8.202137 CCGTTCCTAAATATAAGTCTTTGGAGA 58.798 37.037 0.00 0.00 0.00 3.71
88 89 8.202137 TCCGTTCCTAAATATAAGTCTTTGGAG 58.798 37.037 0.00 0.00 0.00 3.86
89 90 8.081517 TCCGTTCCTAAATATAAGTCTTTGGA 57.918 34.615 0.00 0.00 0.00 3.53
90 91 7.441458 CCTCCGTTCCTAAATATAAGTCTTTGG 59.559 40.741 0.00 0.00 0.00 3.28
91 92 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
92 93 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
93 94 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
94 95 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
95 96 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
96 97 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
97 98 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
100 101 8.759782 CAATATACTCCCTCCGTTCCTAAATAT 58.240 37.037 0.00 0.00 0.00 1.28
101 102 7.179694 CCAATATACTCCCTCCGTTCCTAAATA 59.820 40.741 0.00 0.00 0.00 1.40
102 103 6.013639 CCAATATACTCCCTCCGTTCCTAAAT 60.014 42.308 0.00 0.00 0.00 1.40
103 104 5.306160 CCAATATACTCCCTCCGTTCCTAAA 59.694 44.000 0.00 0.00 0.00 1.85
104 105 4.836736 CCAATATACTCCCTCCGTTCCTAA 59.163 45.833 0.00 0.00 0.00 2.69
105 106 4.106825 TCCAATATACTCCCTCCGTTCCTA 59.893 45.833 0.00 0.00 0.00 2.94
106 107 3.116862 TCCAATATACTCCCTCCGTTCCT 60.117 47.826 0.00 0.00 0.00 3.36
107 108 3.236896 TCCAATATACTCCCTCCGTTCC 58.763 50.000 0.00 0.00 0.00 3.62
108 109 4.100498 TGTTCCAATATACTCCCTCCGTTC 59.900 45.833 0.00 0.00 0.00 3.95
109 110 4.035112 TGTTCCAATATACTCCCTCCGTT 58.965 43.478 0.00 0.00 0.00 4.44
110 111 3.649843 TGTTCCAATATACTCCCTCCGT 58.350 45.455 0.00 0.00 0.00 4.69
111 112 4.141801 TGTTGTTCCAATATACTCCCTCCG 60.142 45.833 0.00 0.00 0.00 4.63
112 113 5.130477 TCTGTTGTTCCAATATACTCCCTCC 59.870 44.000 0.00 0.00 0.00 4.30
113 114 6.235231 TCTGTTGTTCCAATATACTCCCTC 57.765 41.667 0.00 0.00 0.00 4.30
114 115 6.636454 TTCTGTTGTTCCAATATACTCCCT 57.364 37.500 0.00 0.00 0.00 4.20
115 116 6.828785 ACATTCTGTTGTTCCAATATACTCCC 59.171 38.462 0.00 0.00 0.00 4.30
116 117 7.865706 ACATTCTGTTGTTCCAATATACTCC 57.134 36.000 0.00 0.00 0.00 3.85
145 146 0.413832 AGACCTAGCCACTCCCAAGA 59.586 55.000 0.00 0.00 0.00 3.02
187 188 2.168728 GGTGTGGGAGTTAGATGAGACC 59.831 54.545 0.00 0.00 0.00 3.85
228 229 5.789574 AGGATTCACACCTATACCCAAAA 57.210 39.130 0.00 0.00 35.84 2.44
267 268 6.250104 CGTAGTACTGTAGTTGGAATTTCGTC 59.750 42.308 5.39 0.00 0.00 4.20
293 295 3.648009 TGTCCATTCGGTTTGATTTTGC 58.352 40.909 0.00 0.00 0.00 3.68
296 298 6.287525 ACATTTTGTCCATTCGGTTTGATTT 58.712 32.000 0.00 0.00 0.00 2.17
299 301 4.927978 ACATTTTGTCCATTCGGTTTGA 57.072 36.364 0.00 0.00 0.00 2.69
317 319 6.412214 TGAGTGATGATCATTGACTCAACAT 58.588 36.000 30.64 10.81 37.51 2.71
492 495 2.171448 CTCTGATTTCCGGTGGATCCTT 59.829 50.000 14.23 0.00 0.00 3.36
547 555 5.567623 CGATTGTTTCCCTATCTCCATCGAT 60.568 44.000 0.00 0.00 0.00 3.59
567 575 2.125106 GCAGTCTTCCCGCCGATT 60.125 61.111 0.00 0.00 0.00 3.34
569 577 4.069232 CTGCAGTCTTCCCGCCGA 62.069 66.667 5.25 0.00 0.00 5.54
659 668 4.440829 TCCCCAATTGCTCCCGGC 62.441 66.667 0.00 0.00 42.22 6.13
683 692 2.997897 GGGCTCACGGGACAGAGT 60.998 66.667 0.00 0.00 33.46 3.24
733 784 0.035820 GGTCCAAATAGACGTGGCCA 60.036 55.000 0.00 0.00 37.66 5.36
769 820 1.334160 GTCCCCACGGTCCAATTTTT 58.666 50.000 0.00 0.00 0.00 1.94
770 821 0.186386 TGTCCCCACGGTCCAATTTT 59.814 50.000 0.00 0.00 0.00 1.82
771 822 0.186386 TTGTCCCCACGGTCCAATTT 59.814 50.000 0.00 0.00 0.00 1.82
772 823 0.407918 ATTGTCCCCACGGTCCAATT 59.592 50.000 0.00 0.00 31.81 2.32
773 824 0.034477 GATTGTCCCCACGGTCCAAT 60.034 55.000 0.00 0.00 35.71 3.16
774 825 1.131303 AGATTGTCCCCACGGTCCAA 61.131 55.000 0.00 0.00 0.00 3.53
775 826 1.537889 AGATTGTCCCCACGGTCCA 60.538 57.895 0.00 0.00 0.00 4.02
776 827 1.078426 CAGATTGTCCCCACGGTCC 60.078 63.158 0.00 0.00 0.00 4.46
777 828 0.391263 GACAGATTGTCCCCACGGTC 60.391 60.000 0.00 0.00 41.37 4.79
778 829 1.677552 GACAGATTGTCCCCACGGT 59.322 57.895 0.00 0.00 41.37 4.83
779 830 1.447838 CGACAGATTGTCCCCACGG 60.448 63.158 3.81 0.00 44.20 4.94
780 831 0.175760 ATCGACAGATTGTCCCCACG 59.824 55.000 3.81 0.00 44.20 4.94
781 832 1.802880 CGATCGACAGATTGTCCCCAC 60.803 57.143 10.26 0.00 44.20 4.61
782 833 0.459899 CGATCGACAGATTGTCCCCA 59.540 55.000 10.26 0.00 44.20 4.96
783 834 0.249489 CCGATCGACAGATTGTCCCC 60.249 60.000 18.66 0.00 44.20 4.81
784 835 0.744874 TCCGATCGACAGATTGTCCC 59.255 55.000 18.66 0.00 44.20 4.46
785 836 2.667137 GATCCGATCGACAGATTGTCC 58.333 52.381 18.66 0.00 44.20 4.02
877 928 0.402121 GAAGGAAGCTGGAACCTGGT 59.598 55.000 0.00 0.00 34.03 4.00
937 988 2.454941 GGGAGAAGGGGGTGGAGA 59.545 66.667 0.00 0.00 0.00 3.71
942 993 2.609921 GTTCCGGGAGAAGGGGGT 60.610 66.667 0.00 0.00 34.29 4.95
1023 1074 4.783621 GCGCCCATGAGCTGGTCA 62.784 66.667 12.41 12.41 44.30 4.02
1167 1218 5.484173 TCGAAATTATAGCAGCAGTTTGG 57.516 39.130 0.00 0.00 0.00 3.28
1170 1221 4.449068 CCGATCGAAATTATAGCAGCAGTT 59.551 41.667 18.66 0.00 0.00 3.16
1180 1231 4.181578 CGCCTAATCCCGATCGAAATTAT 58.818 43.478 18.66 0.00 0.00 1.28
1236 1289 2.290367 TGTCCATCTTCTGCAAAACACG 59.710 45.455 0.00 0.00 0.00 4.49
1268 1321 3.514777 CAACGAGTGCAGCTTAGGA 57.485 52.632 0.00 0.00 0.00 2.94
1314 1367 4.320421 CGCACAAAATTGAGATGGAACTCA 60.320 41.667 0.00 0.00 43.83 3.41
1415 1468 6.094881 ACTCAAAACTTCTTCGATTCAAACCA 59.905 34.615 0.00 0.00 0.00 3.67
1454 1507 5.604650 AGTTCCTCCAATCTATTCTACCCTG 59.395 44.000 0.00 0.00 0.00 4.45
1475 1528 3.307762 GGTAGCCCAGACAATCAGAAGTT 60.308 47.826 0.00 0.00 0.00 2.66
1480 1533 1.745141 GCAGGTAGCCCAGACAATCAG 60.745 57.143 0.00 0.00 37.23 2.90
1642 1699 6.486253 TGTTCTTAGCACTCAATCAACATC 57.514 37.500 0.00 0.00 0.00 3.06
1651 1708 4.450976 ACACACATTGTTCTTAGCACTCA 58.549 39.130 0.00 0.00 33.09 3.41
1654 1711 5.625311 GCTTAACACACATTGTTCTTAGCAC 59.375 40.000 11.10 0.00 46.05 4.40
1713 1770 7.876936 ACAGCAATCTCAAATCTCATACAAT 57.123 32.000 0.00 0.00 0.00 2.71
1834 1897 2.644299 TGGATTCAGAAGGGAAGCTCAA 59.356 45.455 0.00 0.00 33.82 3.02
1835 1898 2.269023 TGGATTCAGAAGGGAAGCTCA 58.731 47.619 0.00 0.00 33.82 4.26
1837 1900 2.291217 GGTTGGATTCAGAAGGGAAGCT 60.291 50.000 0.00 0.00 33.82 3.74
1845 1908 8.771521 ATCAAATATCATGGTTGGATTCAGAA 57.228 30.769 0.00 0.00 0.00 3.02
1875 1938 7.042335 AGGTTGCAGTACTAACATGATTAGAC 58.958 38.462 16.84 11.97 0.00 2.59
1891 1954 6.152831 GGTTGATTATTAGGAAAGGTTGCAGT 59.847 38.462 0.00 0.00 0.00 4.40
1909 1972 4.322057 AGGCACCTAGATTTGGTTGATT 57.678 40.909 0.00 0.00 35.28 2.57
1910 1973 4.018050 AGAAGGCACCTAGATTTGGTTGAT 60.018 41.667 0.00 0.00 35.28 2.57
1911 1974 3.330701 AGAAGGCACCTAGATTTGGTTGA 59.669 43.478 0.00 0.00 35.28 3.18
2102 2170 3.974401 CCAAAAGAAACGTGTATGTGCTG 59.026 43.478 0.00 0.00 0.00 4.41
2172 2240 3.777106 AGCAACAGAACAGATCCTTCA 57.223 42.857 4.08 0.00 0.00 3.02
2396 2464 5.869579 TGGTATTAATGGGATCAGAAGAGC 58.130 41.667 0.00 0.00 0.00 4.09
2456 2524 8.347004 TCTGGATTTGCAAGTAAACATTATCA 57.653 30.769 0.00 0.00 0.00 2.15
2485 2553 2.988570 TGGAGAACTCGAGTACCTCTC 58.011 52.381 30.36 28.77 39.62 3.20
2662 2730 7.603784 ACAAAGACAAATAATTGGAAGAATGGC 59.396 33.333 0.00 0.00 41.01 4.40
2748 2816 5.048782 CCAAATTTGACACAGAATCCGAGAA 60.049 40.000 19.86 0.00 0.00 2.87
2754 2822 5.452078 TGGTCCAAATTTGACACAGAATC 57.548 39.130 19.86 4.86 0.00 2.52
2758 2826 6.764308 ATCTATGGTCCAAATTTGACACAG 57.236 37.500 19.86 13.09 0.00 3.66
2959 3110 4.010349 CCTCTTCAGTAGCCCGAATTTTT 58.990 43.478 0.00 0.00 0.00 1.94
3017 3168 1.985159 TGATAGCGGCCCCAGAAATAT 59.015 47.619 0.00 0.00 0.00 1.28
3095 3247 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
3096 3248 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
3097 3249 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
3098 3250 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
3099 3251 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
3100 3252 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
3101 3253 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
3102 3254 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
3106 3258 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
3107 3259 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
3108 3260 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
3109 3261 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
3110 3262 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
3111 3263 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
3112 3264 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
3113 3265 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
3114 3266 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
3115 3267 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
3116 3268 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
3117 3269 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
3118 3270 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
3119 3271 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
3120 3272 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
3121 3273 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
3133 3285 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
3134 3286 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
3135 3287 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
3136 3288 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
3137 3289 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
3138 3290 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
3139 3291 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
3140 3292 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
3141 3293 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
3142 3294 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
3143 3295 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
3144 3296 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
3145 3297 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
3146 3298 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
3147 3299 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
3148 3300 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
3149 3301 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
3150 3302 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
3151 3303 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
3152 3304 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
3153 3305 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
3154 3306 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
3166 3318 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
3167 3319 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
3168 3320 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
3169 3321 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
3170 3322 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
3171 3323 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
3172 3324 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
3173 3325 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
3174 3326 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
3175 3327 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
3176 3328 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
3177 3329 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
3178 3330 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
3179 3331 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
3180 3332 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
3181 3333 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
3182 3334 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
3183 3335 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
3184 3336 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
3185 3337 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
3186 3338 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
3187 3339 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
3188 3340 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
3189 3341 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
3190 3342 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
3191 3343 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
3192 3344 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
3202 3354 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
3203 3355 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
3204 3356 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
3205 3357 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
3206 3358 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
3207 3359 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
3208 3360 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
3209 3361 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
3210 3362 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
3211 3363 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
3212 3364 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
3213 3365 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
3214 3366 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
3215 3367 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
3216 3368 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
3217 3369 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
3218 3370 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
3219 3371 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
3220 3372 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
3232 3384 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
3235 3387 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
3236 3388 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
3237 3389 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
3238 3390 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
3244 3396 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
3245 3397 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
3246 3398 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
3247 3399 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
3248 3400 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
3271 3423 6.811253 ATCGTTACAGAAGGCACATAAAAA 57.189 33.333 0.00 0.00 0.00 1.94
3272 3424 6.811253 AATCGTTACAGAAGGCACATAAAA 57.189 33.333 0.00 0.00 0.00 1.52
3273 3425 6.811253 AAATCGTTACAGAAGGCACATAAA 57.189 33.333 0.00 0.00 0.00 1.40
3274 3426 6.811253 AAAATCGTTACAGAAGGCACATAA 57.189 33.333 0.00 0.00 0.00 1.90
3275 3427 8.500753 AATAAAATCGTTACAGAAGGCACATA 57.499 30.769 0.00 0.00 0.00 2.29
3394 3546 1.227586 CGAGCATCTGGAGCAGCAT 60.228 57.895 0.00 0.00 0.00 3.79
3456 3608 8.927675 AAGTATGGTTAATGAAACACACCTAA 57.072 30.769 0.00 0.00 40.08 2.69
3500 3652 5.807520 ACAATGATTTGTGCTCTAGTACTCG 59.192 40.000 0.00 0.00 44.36 4.18
3503 3655 9.319143 AGATAACAATGATTTGTGCTCTAGTAC 57.681 33.333 0.00 0.00 45.30 2.73
3543 3696 9.884299 CAAATGTTGTTTGTACATTATTATGCG 57.116 29.630 0.00 0.00 43.44 4.73
3684 3837 3.324993 GAGAGCTGCCATAACATCTAGC 58.675 50.000 0.00 0.00 0.00 3.42
3698 3932 2.645730 ACTAAAGCAGACGAGAGCTG 57.354 50.000 0.00 0.00 41.70 4.24
3728 3962 7.439381 ACAAAATGCATCAGAAAGAGAAATGT 58.561 30.769 0.00 0.00 0.00 2.71
3746 3980 7.327761 CAGCTGGTTAGAGATCAAAACAAAATG 59.672 37.037 5.57 0.00 0.00 2.32
3842 4076 4.686191 TGTGGATTGCACAAGGAAAATT 57.314 36.364 8.69 0.00 0.00 1.82
3903 4137 5.408604 CCTACCACATAGCGAATCCAATAAC 59.591 44.000 0.00 0.00 0.00 1.89
3914 4148 3.478509 AGAGTAGTCCTACCACATAGCG 58.521 50.000 0.89 0.00 36.75 4.26
4153 4392 2.817839 GCACTTTGGAACCCCATACACT 60.818 50.000 0.00 0.00 43.12 3.55
4166 4405 3.118542 GTCAAAAGCTGAAGCACTTTGG 58.881 45.455 20.62 7.28 45.16 3.28
4168 4407 3.696051 TCTGTCAAAAGCTGAAGCACTTT 59.304 39.130 4.90 1.17 45.16 2.66
4334 4573 7.029563 AGCATAGCTATAAACAACAAGTTTGC 58.970 34.615 5.77 1.97 43.29 3.68
4335 4574 8.454106 AGAGCATAGCTATAAACAACAAGTTTG 58.546 33.333 5.77 0.00 44.29 2.93
4336 4575 8.567285 AGAGCATAGCTATAAACAACAAGTTT 57.433 30.769 5.77 0.00 45.55 2.66
4558 4809 7.996644 ACAATTCAGGTACTAACAAAGGAAGAA 59.003 33.333 0.00 0.00 36.02 2.52
4675 4926 2.628178 TCTGTCATGTTCAGTTCGGTCT 59.372 45.455 15.84 0.00 34.86 3.85
4747 4998 8.872845 GCAGCTTTTAGCACAATAATTAACAAT 58.127 29.630 1.09 0.00 45.56 2.71
4961 5213 2.229062 CGGCTCCTCGAATCATAGCTAA 59.771 50.000 0.00 0.00 33.67 3.09
5091 5343 6.520272 ACTAATAGCAAGAGATAGCAACAGG 58.480 40.000 0.00 0.00 0.00 4.00
5114 5366 8.193250 TCAGTTGACTTGTTTTTGTCTAGTAC 57.807 34.615 0.00 0.00 34.57 2.73
5348 5618 2.216488 CACTATGTCGCACGCTATTGAC 59.784 50.000 0.00 0.00 0.00 3.18
5390 5660 2.599082 GCAGAGACACCGAAATAAGTCG 59.401 50.000 0.00 0.00 40.77 4.18
5449 5719 5.221009 CCTCAGAAAATCTAATGCAAGCCTC 60.221 44.000 0.00 0.00 0.00 4.70
5478 5748 0.814410 CTGCCTGCCTGCATCTAGTG 60.814 60.000 0.00 0.00 41.16 2.74
5479 5749 1.525923 CTGCCTGCCTGCATCTAGT 59.474 57.895 0.00 0.00 41.16 2.57
5481 5751 2.913501 CCTGCCTGCCTGCATCTA 59.086 61.111 0.00 0.00 41.16 1.98
5482 5752 4.816984 GCCTGCCTGCCTGCATCT 62.817 66.667 0.00 0.00 41.16 2.90
5494 5764 0.508641 CTAATATGTCGCACGCCTGC 59.491 55.000 0.00 0.00 40.38 4.85
5495 5765 1.852942 ACTAATATGTCGCACGCCTG 58.147 50.000 0.00 0.00 0.00 4.85
5496 5766 3.181484 TGTTACTAATATGTCGCACGCCT 60.181 43.478 0.00 0.00 0.00 5.52
5500 5770 8.181487 TCTTTTCTGTTACTAATATGTCGCAC 57.819 34.615 0.00 0.00 0.00 5.34
5501 5771 8.766000 TTCTTTTCTGTTACTAATATGTCGCA 57.234 30.769 0.00 0.00 0.00 5.10
5688 6239 1.279496 ATCTTCAGGCAGGCAGTACA 58.721 50.000 0.00 0.00 0.00 2.90
5846 6397 6.013466 TCAGGTGCTAGGAAATATATCATGCA 60.013 38.462 0.00 0.00 0.00 3.96
5924 6477 7.603651 TCAGTACCTTGAGAGTTCTTTATGAC 58.396 38.462 0.00 0.00 0.00 3.06
5970 6532 4.198473 CTCTACGATAGAGTGGACAACG 57.802 50.000 11.60 0.00 45.66 4.10
5980 6542 6.954487 TTCTGGTAATTGCTCTACGATAGA 57.046 37.500 0.00 0.00 41.38 1.98
5981 6543 8.420374 TTTTTCTGGTAATTGCTCTACGATAG 57.580 34.615 0.00 0.00 46.19 2.08
5982 6544 7.494625 CCTTTTTCTGGTAATTGCTCTACGATA 59.505 37.037 0.00 0.00 0.00 2.92
5983 6545 6.316390 CCTTTTTCTGGTAATTGCTCTACGAT 59.684 38.462 0.00 0.00 0.00 3.73
5984 6546 5.642063 CCTTTTTCTGGTAATTGCTCTACGA 59.358 40.000 0.00 0.00 0.00 3.43
5986 6548 6.403746 GCTCCTTTTTCTGGTAATTGCTCTAC 60.404 42.308 0.00 0.00 0.00 2.59
6043 6845 8.831715 ACCCTTCATTTACATCAAAATTTGTC 57.168 30.769 5.56 0.00 0.00 3.18
6090 6892 4.304048 TGGGGAAAGAAGCGGTTTAATA 57.696 40.909 0.00 0.00 0.00 0.98
6094 6896 1.686587 CTTTGGGGAAAGAAGCGGTTT 59.313 47.619 0.00 0.00 31.58 3.27
6106 6922 0.106918 ACAGACAAACGCTTTGGGGA 60.107 50.000 12.79 0.00 44.81 4.81
6142 6958 2.890945 ACCTGGTTTGAAAAATCGAGGG 59.109 45.455 0.00 0.00 0.00 4.30
6172 6988 2.890311 CGGATGGAGATGCTCTAAGTCT 59.110 50.000 0.00 0.00 0.00 3.24
6180 6996 1.330655 ACCGAACGGATGGAGATGCT 61.331 55.000 20.14 0.00 38.96 3.79
6181 6997 0.876342 GACCGAACGGATGGAGATGC 60.876 60.000 20.14 0.00 38.96 3.91
6182 6998 0.747255 AGACCGAACGGATGGAGATG 59.253 55.000 20.14 0.00 38.96 2.90
6183 6999 1.409427 GAAGACCGAACGGATGGAGAT 59.591 52.381 20.14 0.00 38.96 2.75
6184 7000 0.815734 GAAGACCGAACGGATGGAGA 59.184 55.000 20.14 0.00 38.96 3.71
6185 7001 0.179108 GGAAGACCGAACGGATGGAG 60.179 60.000 20.14 0.00 38.96 3.86
6186 7002 0.901114 TGGAAGACCGAACGGATGGA 60.901 55.000 20.14 0.00 39.42 3.41
6187 7003 0.460284 CTGGAAGACCGAACGGATGG 60.460 60.000 20.14 0.00 39.42 3.51
6188 7004 0.460284 CCTGGAAGACCGAACGGATG 60.460 60.000 20.14 0.00 39.42 3.51
6189 7005 1.614241 CCCTGGAAGACCGAACGGAT 61.614 60.000 20.14 5.17 39.42 4.18
6190 7006 2.280552 CCCTGGAAGACCGAACGGA 61.281 63.158 20.14 0.00 39.42 4.69
6191 7007 2.264794 CCCTGGAAGACCGAACGG 59.735 66.667 11.83 11.83 39.42 4.44
6192 7008 2.434359 GCCCTGGAAGACCGAACG 60.434 66.667 0.00 0.00 39.42 3.95
6193 7009 2.434359 CGCCCTGGAAGACCGAAC 60.434 66.667 0.00 0.00 39.42 3.95
6194 7010 4.388499 GCGCCCTGGAAGACCGAA 62.388 66.667 0.00 0.00 39.42 4.30
6198 7014 3.894547 TTTCGGCGCCCTGGAAGAC 62.895 63.158 23.46 0.00 34.07 3.01
6199 7015 2.684192 TTTTTCGGCGCCCTGGAAGA 62.684 55.000 23.46 11.30 34.07 2.87
6200 7016 2.200170 CTTTTTCGGCGCCCTGGAAG 62.200 60.000 23.46 16.07 0.00 3.46
6201 7017 2.203365 TTTTTCGGCGCCCTGGAA 60.203 55.556 23.46 16.26 0.00 3.53
6202 7018 2.671619 CTTTTTCGGCGCCCTGGA 60.672 61.111 23.46 10.06 0.00 3.86
6203 7019 2.671619 TCTTTTTCGGCGCCCTGG 60.672 61.111 23.46 7.26 0.00 4.45
6204 7020 1.912371 GACTCTTTTTCGGCGCCCTG 61.912 60.000 23.46 8.15 0.00 4.45
6205 7021 1.671379 GACTCTTTTTCGGCGCCCT 60.671 57.895 23.46 0.00 0.00 5.19
6206 7022 2.868196 GACTCTTTTTCGGCGCCC 59.132 61.111 23.46 2.84 0.00 6.13
6207 7023 2.474712 CGACTCTTTTTCGGCGCC 59.525 61.111 19.07 19.07 32.66 6.53
6208 7024 2.202184 GCGACTCTTTTTCGGCGC 60.202 61.111 0.00 0.00 36.96 6.53
6211 7027 1.461127 CTTCAGGCGACTCTTTTTCGG 59.539 52.381 0.00 0.00 40.21 4.30
6212 7028 1.461127 CCTTCAGGCGACTCTTTTTCG 59.539 52.381 0.00 0.00 40.21 3.46
6233 7049 2.237751 CCAATCTAGCGCCGGTTCG 61.238 63.158 2.29 0.00 0.00 3.95
6234 7050 2.534903 GCCAATCTAGCGCCGGTTC 61.535 63.158 2.29 0.00 0.00 3.62
6235 7051 2.513897 GCCAATCTAGCGCCGGTT 60.514 61.111 2.29 0.00 0.00 4.44
6242 7058 3.272334 CCCACGCGCCAATCTAGC 61.272 66.667 5.73 0.00 0.00 3.42
6243 7059 2.588877 CCCCACGCGCCAATCTAG 60.589 66.667 5.73 0.00 0.00 2.43
6244 7060 4.169696 CCCCCACGCGCCAATCTA 62.170 66.667 5.73 0.00 0.00 1.98
6252 7068 4.742201 CAGAGTCACCCCCACGCG 62.742 72.222 3.53 3.53 0.00 6.01
6254 7070 3.302347 GAGCAGAGTCACCCCCACG 62.302 68.421 0.00 0.00 0.00 4.94
6255 7071 2.665603 GAGCAGAGTCACCCCCAC 59.334 66.667 0.00 0.00 0.00 4.61
6256 7072 2.607750 GGAGCAGAGTCACCCCCA 60.608 66.667 0.00 0.00 0.00 4.96
6257 7073 3.403558 GGGAGCAGAGTCACCCCC 61.404 72.222 0.00 0.00 36.65 5.40
6258 7074 2.607750 TGGGAGCAGAGTCACCCC 60.608 66.667 0.00 0.00 41.44 4.95
6259 7075 2.664081 CCTGGGAGCAGAGTCACCC 61.664 68.421 0.00 0.00 42.37 4.61
6260 7076 2.985456 CCTGGGAGCAGAGTCACC 59.015 66.667 0.00 0.00 0.00 4.02
6261 7077 2.267324 GCCTGGGAGCAGAGTCAC 59.733 66.667 0.00 0.00 0.00 3.67
6262 7078 3.385384 CGCCTGGGAGCAGAGTCA 61.385 66.667 0.00 0.00 0.00 3.41
6263 7079 3.363844 GACGCCTGGGAGCAGAGTC 62.364 68.421 0.00 0.00 0.00 3.36
6264 7080 3.386237 GACGCCTGGGAGCAGAGT 61.386 66.667 0.00 0.00 0.00 3.24
6265 7081 4.504916 CGACGCCTGGGAGCAGAG 62.505 72.222 0.00 0.00 0.00 3.35
6277 7093 4.849329 CGTCCTGTAGGCCGACGC 62.849 72.222 15.58 3.93 39.16 5.19
6302 7118 6.959361 ACTAATTGTATGAAATAGCGCCAAG 58.041 36.000 2.29 0.00 0.00 3.61
6303 7119 6.935741 ACTAATTGTATGAAATAGCGCCAA 57.064 33.333 2.29 0.00 0.00 4.52
6304 7120 6.724263 CAACTAATTGTATGAAATAGCGCCA 58.276 36.000 2.29 0.00 0.00 5.69
6305 7121 5.625311 GCAACTAATTGTATGAAATAGCGCC 59.375 40.000 2.29 0.00 38.17 6.53
6306 7122 6.198687 TGCAACTAATTGTATGAAATAGCGC 58.801 36.000 0.00 0.00 38.17 5.92
6307 7123 8.523464 GTTTGCAACTAATTGTATGAAATAGCG 58.477 33.333 0.00 0.00 38.17 4.26
6308 7124 9.573133 AGTTTGCAACTAATTGTATGAAATAGC 57.427 29.630 0.00 0.00 40.69 2.97
6311 7127 9.630098 CTGAGTTTGCAACTAATTGTATGAAAT 57.370 29.630 0.00 0.00 43.03 2.17
6312 7128 7.594758 GCTGAGTTTGCAACTAATTGTATGAAA 59.405 33.333 0.00 0.00 43.03 2.69
6313 7129 7.083858 GCTGAGTTTGCAACTAATTGTATGAA 58.916 34.615 0.00 0.00 43.03 2.57
6314 7130 6.611381 GCTGAGTTTGCAACTAATTGTATGA 58.389 36.000 0.00 0.00 43.03 2.15
6315 7131 5.509272 CGCTGAGTTTGCAACTAATTGTATG 59.491 40.000 0.00 0.00 43.03 2.39
6316 7132 5.411361 TCGCTGAGTTTGCAACTAATTGTAT 59.589 36.000 0.00 0.00 43.03 2.29
6317 7133 4.752604 TCGCTGAGTTTGCAACTAATTGTA 59.247 37.500 0.00 0.00 43.03 2.41
6318 7134 3.563808 TCGCTGAGTTTGCAACTAATTGT 59.436 39.130 0.00 0.00 43.03 2.71
6319 7135 4.145876 TCGCTGAGTTTGCAACTAATTG 57.854 40.909 0.00 0.00 43.03 2.32
6320 7136 4.275936 AGTTCGCTGAGTTTGCAACTAATT 59.724 37.500 0.00 0.00 43.03 1.40
6321 7137 3.815401 AGTTCGCTGAGTTTGCAACTAAT 59.185 39.130 0.00 0.00 43.03 1.73
6322 7138 3.202906 AGTTCGCTGAGTTTGCAACTAA 58.797 40.909 0.00 0.00 43.03 2.24
6323 7139 2.833794 AGTTCGCTGAGTTTGCAACTA 58.166 42.857 0.00 0.00 43.03 2.24
6324 7140 1.668419 AGTTCGCTGAGTTTGCAACT 58.332 45.000 0.00 0.00 46.38 3.16
6325 7141 2.475200 AAGTTCGCTGAGTTTGCAAC 57.525 45.000 0.00 0.00 0.00 4.17
6326 7142 2.421775 TGAAAGTTCGCTGAGTTTGCAA 59.578 40.909 0.00 0.00 0.00 4.08
6327 7143 2.013400 TGAAAGTTCGCTGAGTTTGCA 58.987 42.857 0.00 0.00 0.00 4.08
6328 7144 2.376032 GTGAAAGTTCGCTGAGTTTGC 58.624 47.619 0.00 0.00 34.94 3.68
6329 7145 2.284150 TCGTGAAAGTTCGCTGAGTTTG 59.716 45.455 3.33 0.00 35.61 2.93
6330 7146 2.546778 TCGTGAAAGTTCGCTGAGTTT 58.453 42.857 3.33 0.00 35.61 2.66
6331 7147 2.218953 TCGTGAAAGTTCGCTGAGTT 57.781 45.000 3.33 0.00 35.61 3.01
6332 7148 1.859080 GTTCGTGAAAGTTCGCTGAGT 59.141 47.619 3.33 0.00 35.61 3.41
6333 7149 2.128035 AGTTCGTGAAAGTTCGCTGAG 58.872 47.619 3.33 0.00 35.61 3.35
6334 7150 2.124903 GAGTTCGTGAAAGTTCGCTGA 58.875 47.619 3.33 0.39 35.61 4.26
6335 7151 1.858458 TGAGTTCGTGAAAGTTCGCTG 59.142 47.619 3.33 0.00 35.61 5.18
6336 7152 2.128035 CTGAGTTCGTGAAAGTTCGCT 58.872 47.619 3.33 0.00 35.61 4.93
6337 7153 1.397315 GCTGAGTTCGTGAAAGTTCGC 60.397 52.381 0.00 0.00 0.00 4.70
6338 7154 1.136884 CGCTGAGTTCGTGAAAGTTCG 60.137 52.381 0.00 0.00 0.00 3.95
6339 7155 2.124903 TCGCTGAGTTCGTGAAAGTTC 58.875 47.619 0.00 0.00 0.00 3.01
6340 7156 2.218953 TCGCTGAGTTCGTGAAAGTT 57.781 45.000 0.00 0.00 0.00 2.66
6341 7157 2.218953 TTCGCTGAGTTCGTGAAAGT 57.781 45.000 0.00 0.00 0.00 2.66
6342 7158 3.795561 ATTTCGCTGAGTTCGTGAAAG 57.204 42.857 13.61 0.00 42.13 2.62
6343 7159 4.034626 TGAAATTTCGCTGAGTTCGTGAAA 59.965 37.500 13.34 11.83 42.76 2.69
6344 7160 3.558006 TGAAATTTCGCTGAGTTCGTGAA 59.442 39.130 13.34 0.00 0.00 3.18
6345 7161 3.127589 TGAAATTTCGCTGAGTTCGTGA 58.872 40.909 13.34 0.00 0.00 4.35
6346 7162 3.519908 TGAAATTTCGCTGAGTTCGTG 57.480 42.857 13.34 0.00 0.00 4.35
6347 7163 4.213270 TCAATGAAATTTCGCTGAGTTCGT 59.787 37.500 13.34 0.00 31.22 3.85
6348 7164 4.711721 TCAATGAAATTTCGCTGAGTTCG 58.288 39.130 13.34 0.00 31.22 3.95
6349 7165 6.991485 TTTCAATGAAATTTCGCTGAGTTC 57.009 33.333 13.34 0.00 31.22 3.01
6350 7166 7.951530 AATTTCAATGAAATTTCGCTGAGTT 57.048 28.000 23.70 12.37 46.07 3.01
6381 7197 7.515998 GCGTAGTTTGCATGTGTTTATGTTTTT 60.516 33.333 0.00 0.00 0.00 1.94
6382 7198 6.074569 GCGTAGTTTGCATGTGTTTATGTTTT 60.075 34.615 0.00 0.00 0.00 2.43
6383 7199 5.401079 GCGTAGTTTGCATGTGTTTATGTTT 59.599 36.000 0.00 0.00 0.00 2.83
6384 7200 4.915085 GCGTAGTTTGCATGTGTTTATGTT 59.085 37.500 0.00 0.00 0.00 2.71
6385 7201 4.472286 GCGTAGTTTGCATGTGTTTATGT 58.528 39.130 0.00 0.00 0.00 2.29
6386 7202 3.851403 GGCGTAGTTTGCATGTGTTTATG 59.149 43.478 0.00 0.00 0.00 1.90
6387 7203 3.756434 AGGCGTAGTTTGCATGTGTTTAT 59.244 39.130 0.00 0.00 0.00 1.40
6388 7204 3.142951 AGGCGTAGTTTGCATGTGTTTA 58.857 40.909 0.00 0.00 0.00 2.01
6389 7205 1.953686 AGGCGTAGTTTGCATGTGTTT 59.046 42.857 0.00 0.00 0.00 2.83
6390 7206 1.604604 AGGCGTAGTTTGCATGTGTT 58.395 45.000 0.00 0.00 0.00 3.32
6391 7207 2.346803 CTAGGCGTAGTTTGCATGTGT 58.653 47.619 5.25 0.00 0.00 3.72
6392 7208 1.665679 CCTAGGCGTAGTTTGCATGTG 59.334 52.381 12.21 0.00 0.00 3.21
6393 7209 1.553248 TCCTAGGCGTAGTTTGCATGT 59.447 47.619 12.21 0.00 0.00 3.21
6394 7210 2.309528 TCCTAGGCGTAGTTTGCATG 57.690 50.000 12.21 0.00 0.00 4.06
6395 7211 2.236395 AGTTCCTAGGCGTAGTTTGCAT 59.764 45.455 12.21 0.00 0.00 3.96
6396 7212 1.621814 AGTTCCTAGGCGTAGTTTGCA 59.378 47.619 12.21 0.00 0.00 4.08
6397 7213 2.000447 CAGTTCCTAGGCGTAGTTTGC 59.000 52.381 12.21 0.69 0.00 3.68
6398 7214 2.993899 CACAGTTCCTAGGCGTAGTTTG 59.006 50.000 12.21 7.25 0.00 2.93
6399 7215 2.612221 GCACAGTTCCTAGGCGTAGTTT 60.612 50.000 12.21 0.00 0.00 2.66
6400 7216 1.067071 GCACAGTTCCTAGGCGTAGTT 60.067 52.381 12.21 0.00 0.00 2.24
6401 7217 0.531200 GCACAGTTCCTAGGCGTAGT 59.469 55.000 12.21 0.00 0.00 2.73
6402 7218 0.179108 GGCACAGTTCCTAGGCGTAG 60.179 60.000 2.96 6.46 0.00 3.51
6403 7219 1.610554 GGGCACAGTTCCTAGGCGTA 61.611 60.000 2.96 0.00 0.00 4.42
6404 7220 2.663196 GGCACAGTTCCTAGGCGT 59.337 61.111 2.96 0.00 0.00 5.68
6405 7221 2.125106 GGGCACAGTTCCTAGGCG 60.125 66.667 2.96 0.00 0.00 5.52
6406 7222 2.125106 CGGGCACAGTTCCTAGGC 60.125 66.667 2.96 0.00 0.00 3.93
6407 7223 1.079127 CACGGGCACAGTTCCTAGG 60.079 63.158 0.82 0.82 31.98 3.02
6408 7224 0.389948 GACACGGGCACAGTTCCTAG 60.390 60.000 0.00 0.00 31.98 3.02
6409 7225 1.669440 GACACGGGCACAGTTCCTA 59.331 57.895 0.00 0.00 31.98 2.94
6410 7226 2.426023 GACACGGGCACAGTTCCT 59.574 61.111 0.00 0.00 31.98 3.36
6411 7227 2.668550 GGACACGGGCACAGTTCC 60.669 66.667 0.00 0.00 31.98 3.62
6412 7228 2.110213 TGGACACGGGCACAGTTC 59.890 61.111 0.00 0.00 31.98 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.