Multiple sequence alignment - TraesCS6A01G216100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G216100 chr6A 100.000 2923 0 0 1 2923 398168955 398166033 0.000000e+00 5398.0
1 TraesCS6A01G216100 chr6A 82.353 153 23 4 2679 2830 575588966 575588817 2.360000e-26 130.0
2 TraesCS6A01G216100 chr6A 81.410 156 24 5 2677 2830 108184240 108184392 3.960000e-24 122.0
3 TraesCS6A01G216100 chr6B 92.897 1633 66 20 447 2048 439075662 439077275 0.000000e+00 2327.0
4 TraesCS6A01G216100 chr6B 90.938 320 22 3 2361 2680 439078915 439079227 9.680000e-115 424.0
5 TraesCS6A01G216100 chr6B 87.975 316 16 11 2177 2480 439078608 439078913 1.290000e-93 353.0
6 TraesCS6A01G216100 chr6B 90.789 152 12 1 2033 2182 439078389 439078540 4.940000e-48 202.0
7 TraesCS6A01G216100 chr6D 93.933 1368 43 12 704 2047 277267616 277266265 0.000000e+00 2030.0
8 TraesCS6A01G216100 chr6D 86.600 597 39 13 2040 2609 277263461 277262879 3.200000e-174 621.0
9 TraesCS6A01G216100 chr6D 94.526 274 13 2 443 714 277269552 277269279 3.480000e-114 422.0
10 TraesCS6A01G216100 chr6D 87.440 207 12 2 1 204 277269767 277269572 2.930000e-55 226.0
11 TraesCS6A01G216100 chr7A 92.531 241 18 0 203 443 616243721 616243961 2.160000e-91 346.0
12 TraesCS6A01G216100 chr7A 82.353 153 23 4 2680 2830 108835513 108835663 2.360000e-26 130.0
13 TraesCS6A01G216100 chr7A 82.119 151 23 4 2681 2830 19470483 19470336 3.060000e-25 126.0
14 TraesCS6A01G216100 chr4A 92.531 241 18 0 203 443 613553006 613553246 2.160000e-91 346.0
15 TraesCS6A01G216100 chr4A 91.803 244 16 3 203 443 627573756 627573514 1.300000e-88 337.0
16 TraesCS6A01G216100 chr4A 89.299 271 21 2 1633 1903 590305517 590305779 1.680000e-87 333.0
17 TraesCS6A01G216100 chr4A 89.320 103 9 2 2578 2680 594154127 594154027 8.500000e-26 128.0
18 TraesCS6A01G216100 chr4A 80.368 163 29 3 2679 2841 625031601 625031442 1.420000e-23 121.0
19 TraesCS6A01G216100 chr3B 92.531 241 18 0 203 443 12175015 12174775 2.160000e-91 346.0
20 TraesCS6A01G216100 chr3B 89.333 75 6 2 2680 2754 804234735 804234663 3.100000e-15 93.5
21 TraesCS6A01G216100 chr2A 92.116 241 19 0 203 443 84977529 84977769 1.000000e-89 340.0
22 TraesCS6A01G216100 chr2A 91.057 246 22 0 200 445 350731882 350732127 1.680000e-87 333.0
23 TraesCS6A01G216100 chr2A 91.093 247 21 1 201 447 478914843 478914598 1.680000e-87 333.0
24 TraesCS6A01G216100 chr2A 79.167 408 74 10 1516 1922 590817273 590816876 3.710000e-69 272.0
25 TraesCS6A01G216100 chr2A 78.673 422 74 14 1506 1922 590965764 590965354 1.730000e-67 267.0
26 TraesCS6A01G216100 chr2A 78.125 416 71 16 1516 1925 590974473 590974072 2.250000e-61 246.0
27 TraesCS6A01G216100 chr1A 90.873 252 22 1 197 448 479213930 479214180 1.300000e-88 337.0
28 TraesCS6A01G216100 chr1B 91.129 248 19 3 200 445 479408022 479408268 1.680000e-87 333.0
29 TraesCS6A01G216100 chr1B 89.320 103 10 1 2578 2680 115751702 115751601 8.500000e-26 128.0
30 TraesCS6A01G216100 chr1B 86.726 113 11 3 2571 2680 456155382 456155271 3.960000e-24 122.0
31 TraesCS6A01G216100 chr2D 80.392 408 69 10 1516 1922 446652681 446652284 1.700000e-77 300.0
32 TraesCS6A01G216100 chr2D 77.831 415 74 14 1516 1925 446932523 446932924 1.050000e-59 241.0
33 TraesCS6A01G216100 chr2D 92.391 92 6 1 2589 2680 567484106 567484016 2.360000e-26 130.0
34 TraesCS6A01G216100 chr2B 79.902 408 71 10 1516 1922 526670424 526670027 3.690000e-74 289.0
35 TraesCS6A01G216100 chr5D 87.342 237 23 2 2685 2921 350799267 350799496 6.210000e-67 265.0
36 TraesCS6A01G216100 chr5D 94.040 151 9 0 2679 2829 513508693 513508843 2.270000e-56 230.0
37 TraesCS6A01G216100 chr4D 90.291 103 9 1 2578 2680 355283561 355283662 1.830000e-27 134.0
38 TraesCS6A01G216100 chr5B 92.391 92 6 1 2589 2680 337054731 337054821 2.360000e-26 130.0
39 TraesCS6A01G216100 chr3D 90.805 87 7 1 2594 2680 87395539 87395624 6.620000e-22 115.0
40 TraesCS6A01G216100 chr3D 79.389 131 22 5 2701 2830 310698599 310698473 1.440000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G216100 chr6A 398166033 398168955 2922 True 5398.00 5398 100.00000 1 2923 1 chr6A.!!$R1 2922
1 TraesCS6A01G216100 chr6B 439075662 439079227 3565 False 826.50 2327 90.64975 447 2680 4 chr6B.!!$F1 2233
2 TraesCS6A01G216100 chr6D 277262879 277269767 6888 True 824.75 2030 90.62475 1 2609 4 chr6D.!!$R1 2608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 139 0.331278 CATGACAACCCCAGCCCTAA 59.669 55.0 0.0 0.0 0.0 2.69 F
136 140 0.331616 ATGACAACCCCAGCCCTAAC 59.668 55.0 0.0 0.0 0.0 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1463 3203 0.249784 CTCATCATGGTCAGGGCTCG 60.250 60.0 0.0 0.0 0.00 5.03 R
1926 3666 2.675317 GCGATGTCCTAAACAGTGAGCT 60.675 50.0 0.0 0.0 42.37 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 1.736645 CCGTGTCACGTAGGGCAAG 60.737 63.158 23.01 2.31 40.58 4.01
74 75 0.673644 GTGTCACGTAGGGCAAGCAT 60.674 55.000 0.00 0.00 0.00 3.79
129 133 3.743714 TCAACCATGACAACCCCAG 57.256 52.632 0.00 0.00 0.00 4.45
130 134 0.539438 TCAACCATGACAACCCCAGC 60.539 55.000 0.00 0.00 0.00 4.85
131 135 1.228862 AACCATGACAACCCCAGCC 60.229 57.895 0.00 0.00 0.00 4.85
132 136 2.362889 CCATGACAACCCCAGCCC 60.363 66.667 0.00 0.00 0.00 5.19
133 137 2.765969 CATGACAACCCCAGCCCT 59.234 61.111 0.00 0.00 0.00 5.19
134 138 1.570857 CCATGACAACCCCAGCCCTA 61.571 60.000 0.00 0.00 0.00 3.53
135 139 0.331278 CATGACAACCCCAGCCCTAA 59.669 55.000 0.00 0.00 0.00 2.69
136 140 0.331616 ATGACAACCCCAGCCCTAAC 59.668 55.000 0.00 0.00 0.00 2.34
137 141 1.001269 GACAACCCCAGCCCTAACC 60.001 63.158 0.00 0.00 0.00 2.85
138 142 2.359011 CAACCCCAGCCCTAACCC 59.641 66.667 0.00 0.00 0.00 4.11
139 143 2.121228 AACCCCAGCCCTAACCCA 60.121 61.111 0.00 0.00 0.00 4.51
145 149 2.122056 AGCCCTAACCCACCGAGT 59.878 61.111 0.00 0.00 0.00 4.18
157 161 0.742281 CACCGAGTGATGGGCTGAAG 60.742 60.000 0.00 0.00 35.23 3.02
180 184 4.368565 TGTATGGTAGCCGTATCTCTCT 57.631 45.455 0.00 0.00 0.00 3.10
189 193 3.118956 AGCCGTATCTCTCTGGAACAAAG 60.119 47.826 0.00 0.00 38.70 2.77
193 197 5.341617 CGTATCTCTCTGGAACAAAGGTAC 58.658 45.833 0.00 0.00 38.70 3.34
194 198 5.105877 CGTATCTCTCTGGAACAAAGGTACA 60.106 44.000 0.00 0.00 38.70 2.90
201 205 6.497259 TCTCTGGAACAAAGGTACACTTATCT 59.503 38.462 0.00 0.00 38.85 1.98
204 208 8.092687 TCTGGAACAAAGGTACACTTATCTTAC 58.907 37.037 0.00 0.00 38.85 2.34
205 209 7.970102 TGGAACAAAGGTACACTTATCTTACT 58.030 34.615 0.00 0.00 38.85 2.24
206 210 8.092687 TGGAACAAAGGTACACTTATCTTACTC 58.907 37.037 0.00 0.00 38.85 2.59
207 211 7.548427 GGAACAAAGGTACACTTATCTTACTCC 59.452 40.741 0.00 0.00 38.85 3.85
208 212 6.944096 ACAAAGGTACACTTATCTTACTCCC 58.056 40.000 0.00 0.00 38.85 4.30
209 213 6.729569 ACAAAGGTACACTTATCTTACTCCCT 59.270 38.462 0.00 0.00 38.85 4.20
210 214 7.093421 ACAAAGGTACACTTATCTTACTCCCTC 60.093 40.741 0.00 0.00 38.85 4.30
211 215 5.456779 AGGTACACTTATCTTACTCCCTCC 58.543 45.833 0.00 0.00 0.00 4.30
212 216 5.043582 AGGTACACTTATCTTACTCCCTCCA 60.044 44.000 0.00 0.00 0.00 3.86
213 217 5.839606 GGTACACTTATCTTACTCCCTCCAT 59.160 44.000 0.00 0.00 0.00 3.41
216 220 6.890293 ACACTTATCTTACTCCCTCCATTTC 58.110 40.000 0.00 0.00 0.00 2.17
218 222 6.763610 CACTTATCTTACTCCCTCCATTTCAC 59.236 42.308 0.00 0.00 0.00 3.18
219 223 6.443849 ACTTATCTTACTCCCTCCATTTCACA 59.556 38.462 0.00 0.00 0.00 3.58
220 224 5.779241 ATCTTACTCCCTCCATTTCACAA 57.221 39.130 0.00 0.00 0.00 3.33
221 225 5.779241 TCTTACTCCCTCCATTTCACAAT 57.221 39.130 0.00 0.00 0.00 2.71
222 226 5.500234 TCTTACTCCCTCCATTTCACAATG 58.500 41.667 0.00 0.00 39.79 2.82
223 227 3.814504 ACTCCCTCCATTTCACAATGT 57.185 42.857 0.00 0.00 38.58 2.71
224 228 4.927267 ACTCCCTCCATTTCACAATGTA 57.073 40.909 0.00 0.00 38.58 2.29
225 229 4.848357 ACTCCCTCCATTTCACAATGTAG 58.152 43.478 0.00 0.00 38.58 2.74
226 230 4.289672 ACTCCCTCCATTTCACAATGTAGT 59.710 41.667 0.00 0.00 38.58 2.73
227 231 4.588899 TCCCTCCATTTCACAATGTAGTG 58.411 43.478 0.00 0.00 38.58 2.74
228 232 3.129287 CCCTCCATTTCACAATGTAGTGC 59.871 47.826 0.00 0.00 38.58 4.40
229 233 4.012374 CCTCCATTTCACAATGTAGTGCT 58.988 43.478 0.00 0.00 38.58 4.40
230 234 4.460382 CCTCCATTTCACAATGTAGTGCTT 59.540 41.667 0.00 0.00 38.58 3.91
231 235 5.392380 CCTCCATTTCACAATGTAGTGCTTC 60.392 44.000 0.00 0.00 38.58 3.86
232 236 4.458989 TCCATTTCACAATGTAGTGCTTCC 59.541 41.667 0.00 0.00 38.58 3.46
233 237 4.460382 CCATTTCACAATGTAGTGCTTCCT 59.540 41.667 0.00 0.00 38.58 3.36
234 238 5.392380 CCATTTCACAATGTAGTGCTTCCTC 60.392 44.000 0.00 0.00 38.58 3.71
235 239 4.623932 TTCACAATGTAGTGCTTCCTCT 57.376 40.909 0.00 0.00 39.35 3.69
236 240 5.738619 TTCACAATGTAGTGCTTCCTCTA 57.261 39.130 0.00 0.00 39.35 2.43
237 241 5.939764 TCACAATGTAGTGCTTCCTCTAT 57.060 39.130 0.00 0.00 39.35 1.98
238 242 6.299805 TCACAATGTAGTGCTTCCTCTATT 57.700 37.500 0.00 0.00 39.35 1.73
239 243 6.341316 TCACAATGTAGTGCTTCCTCTATTC 58.659 40.000 0.00 0.00 39.35 1.75
240 244 5.525378 CACAATGTAGTGCTTCCTCTATTCC 59.475 44.000 0.00 0.00 32.04 3.01
241 245 4.965200 ATGTAGTGCTTCCTCTATTCCC 57.035 45.455 0.00 0.00 0.00 3.97
242 246 2.693591 TGTAGTGCTTCCTCTATTCCCG 59.306 50.000 0.00 0.00 0.00 5.14
243 247 1.867363 AGTGCTTCCTCTATTCCCGT 58.133 50.000 0.00 0.00 0.00 5.28
244 248 1.482593 AGTGCTTCCTCTATTCCCGTG 59.517 52.381 0.00 0.00 0.00 4.94
245 249 1.207329 GTGCTTCCTCTATTCCCGTGT 59.793 52.381 0.00 0.00 0.00 4.49
246 250 1.906574 TGCTTCCTCTATTCCCGTGTT 59.093 47.619 0.00 0.00 0.00 3.32
247 251 2.304761 TGCTTCCTCTATTCCCGTGTTT 59.695 45.455 0.00 0.00 0.00 2.83
248 252 3.244770 TGCTTCCTCTATTCCCGTGTTTT 60.245 43.478 0.00 0.00 0.00 2.43
249 253 4.020039 TGCTTCCTCTATTCCCGTGTTTTA 60.020 41.667 0.00 0.00 0.00 1.52
250 254 4.939439 GCTTCCTCTATTCCCGTGTTTTAA 59.061 41.667 0.00 0.00 0.00 1.52
251 255 5.163784 GCTTCCTCTATTCCCGTGTTTTAAC 60.164 44.000 0.00 0.00 0.00 2.01
252 256 5.750352 TCCTCTATTCCCGTGTTTTAACT 57.250 39.130 0.00 0.00 0.00 2.24
253 257 6.117975 TCCTCTATTCCCGTGTTTTAACTT 57.882 37.500 0.00 0.00 0.00 2.66
254 258 6.536447 TCCTCTATTCCCGTGTTTTAACTTT 58.464 36.000 0.00 0.00 0.00 2.66
255 259 6.428771 TCCTCTATTCCCGTGTTTTAACTTTG 59.571 38.462 0.00 0.00 0.00 2.77
256 260 6.428771 CCTCTATTCCCGTGTTTTAACTTTGA 59.571 38.462 0.00 0.00 0.00 2.69
257 261 7.193377 TCTATTCCCGTGTTTTAACTTTGAC 57.807 36.000 0.00 0.00 0.00 3.18
258 262 4.635833 TTCCCGTGTTTTAACTTTGACC 57.364 40.909 0.00 0.00 0.00 4.02
259 263 2.613133 TCCCGTGTTTTAACTTTGACCG 59.387 45.455 0.00 0.00 0.00 4.79
260 264 2.355444 CCCGTGTTTTAACTTTGACCGT 59.645 45.455 0.00 0.00 0.00 4.83
261 265 3.559242 CCCGTGTTTTAACTTTGACCGTA 59.441 43.478 0.00 0.00 0.00 4.02
262 266 4.034975 CCCGTGTTTTAACTTTGACCGTAA 59.965 41.667 0.00 0.00 0.00 3.18
263 267 5.448360 CCCGTGTTTTAACTTTGACCGTAAA 60.448 40.000 0.00 0.00 0.00 2.01
264 268 6.200808 CCGTGTTTTAACTTTGACCGTAAAT 58.799 36.000 0.00 0.00 0.00 1.40
265 269 6.692249 CCGTGTTTTAACTTTGACCGTAAATT 59.308 34.615 0.00 0.00 0.00 1.82
266 270 7.220491 CCGTGTTTTAACTTTGACCGTAAATTT 59.780 33.333 0.00 0.00 0.00 1.82
267 271 9.219497 CGTGTTTTAACTTTGACCGTAAATTTA 57.781 29.630 0.00 0.00 0.00 1.40
274 278 8.449251 AACTTTGACCGTAAATTTAACTACCA 57.551 30.769 0.00 0.00 0.00 3.25
275 279 8.449251 ACTTTGACCGTAAATTTAACTACCAA 57.551 30.769 0.00 0.00 0.00 3.67
276 280 8.901793 ACTTTGACCGTAAATTTAACTACCAAA 58.098 29.630 0.00 6.66 0.00 3.28
277 281 9.733219 CTTTGACCGTAAATTTAACTACCAAAA 57.267 29.630 0.00 0.00 0.00 2.44
278 282 9.513727 TTTGACCGTAAATTTAACTACCAAAAC 57.486 29.630 0.00 0.00 0.00 2.43
279 283 7.647228 TGACCGTAAATTTAACTACCAAAACC 58.353 34.615 0.00 0.00 0.00 3.27
280 284 6.667370 ACCGTAAATTTAACTACCAAAACCG 58.333 36.000 0.00 0.00 0.00 4.44
281 285 6.484977 ACCGTAAATTTAACTACCAAAACCGA 59.515 34.615 0.00 0.00 0.00 4.69
282 286 7.174772 ACCGTAAATTTAACTACCAAAACCGAT 59.825 33.333 0.00 0.00 0.00 4.18
283 287 8.022550 CCGTAAATTTAACTACCAAAACCGATT 58.977 33.333 0.00 0.00 0.00 3.34
284 288 8.842777 CGTAAATTTAACTACCAAAACCGATTG 58.157 33.333 0.00 0.00 0.00 2.67
285 289 9.681692 GTAAATTTAACTACCAAAACCGATTGT 57.318 29.630 0.00 0.00 0.00 2.71
286 290 8.582433 AAATTTAACTACCAAAACCGATTGTG 57.418 30.769 0.00 0.00 0.00 3.33
287 291 3.636282 AACTACCAAAACCGATTGTGC 57.364 42.857 0.00 0.00 0.00 4.57
288 292 2.858745 ACTACCAAAACCGATTGTGCT 58.141 42.857 0.00 0.00 0.00 4.40
289 293 2.552315 ACTACCAAAACCGATTGTGCTG 59.448 45.455 0.00 0.00 0.00 4.41
290 294 1.686355 ACCAAAACCGATTGTGCTGA 58.314 45.000 0.00 0.00 0.00 4.26
291 295 1.608590 ACCAAAACCGATTGTGCTGAG 59.391 47.619 0.00 0.00 0.00 3.35
292 296 1.879380 CCAAAACCGATTGTGCTGAGA 59.121 47.619 0.00 0.00 0.00 3.27
293 297 2.095567 CCAAAACCGATTGTGCTGAGAG 60.096 50.000 0.00 0.00 0.00 3.20
294 298 1.160137 AAACCGATTGTGCTGAGAGC 58.840 50.000 0.00 0.00 42.82 4.09
310 314 7.772721 GCTGAGAGCAAAAATTATATTAGCG 57.227 36.000 0.00 0.00 41.89 4.26
311 315 7.576236 GCTGAGAGCAAAAATTATATTAGCGA 58.424 34.615 0.00 0.00 41.89 4.93
312 316 8.070171 GCTGAGAGCAAAAATTATATTAGCGAA 58.930 33.333 0.00 0.00 41.89 4.70
316 320 9.599322 AGAGCAAAAATTATATTAGCGAATTCG 57.401 29.630 23.34 23.34 43.27 3.34
317 321 9.382244 GAGCAAAAATTATATTAGCGAATTCGT 57.618 29.630 27.24 16.78 42.22 3.85
363 367 2.112297 TTTTTCTCCCGCCGCAGT 59.888 55.556 0.00 0.00 0.00 4.40
364 368 1.527380 TTTTTCTCCCGCCGCAGTT 60.527 52.632 0.00 0.00 0.00 3.16
365 369 1.104577 TTTTTCTCCCGCCGCAGTTT 61.105 50.000 0.00 0.00 0.00 2.66
366 370 1.791103 TTTTCTCCCGCCGCAGTTTG 61.791 55.000 0.00 0.00 0.00 2.93
367 371 2.951475 TTTCTCCCGCCGCAGTTTGT 62.951 55.000 0.00 0.00 0.00 2.83
368 372 3.423154 CTCCCGCCGCAGTTTGTC 61.423 66.667 0.00 0.00 0.00 3.18
369 373 3.883744 CTCCCGCCGCAGTTTGTCT 62.884 63.158 0.00 0.00 0.00 3.41
370 374 2.978010 CCCGCCGCAGTTTGTCTT 60.978 61.111 0.00 0.00 0.00 3.01
371 375 2.252260 CCGCCGCAGTTTGTCTTG 59.748 61.111 0.00 0.00 0.00 3.02
372 376 2.542907 CCGCCGCAGTTTGTCTTGT 61.543 57.895 0.00 0.00 0.00 3.16
373 377 1.355210 CGCCGCAGTTTGTCTTGTT 59.645 52.632 0.00 0.00 0.00 2.83
374 378 0.929824 CGCCGCAGTTTGTCTTGTTG 60.930 55.000 0.00 0.00 0.00 3.33
375 379 0.594796 GCCGCAGTTTGTCTTGTTGG 60.595 55.000 0.00 0.00 0.00 3.77
376 380 0.738389 CCGCAGTTTGTCTTGTTGGT 59.262 50.000 0.00 0.00 0.00 3.67
377 381 1.134175 CCGCAGTTTGTCTTGTTGGTT 59.866 47.619 0.00 0.00 0.00 3.67
378 382 2.356382 CCGCAGTTTGTCTTGTTGGTTA 59.644 45.455 0.00 0.00 0.00 2.85
379 383 3.181495 CCGCAGTTTGTCTTGTTGGTTAA 60.181 43.478 0.00 0.00 0.00 2.01
380 384 4.416620 CGCAGTTTGTCTTGTTGGTTAAA 58.583 39.130 0.00 0.00 0.00 1.52
381 385 5.040635 CGCAGTTTGTCTTGTTGGTTAAAT 58.959 37.500 0.00 0.00 0.00 1.40
382 386 5.518487 CGCAGTTTGTCTTGTTGGTTAAATT 59.482 36.000 0.00 0.00 0.00 1.82
383 387 6.035542 CGCAGTTTGTCTTGTTGGTTAAATTT 59.964 34.615 0.00 0.00 0.00 1.82
384 388 7.221067 CGCAGTTTGTCTTGTTGGTTAAATTTA 59.779 33.333 0.00 0.00 0.00 1.40
385 389 9.040939 GCAGTTTGTCTTGTTGGTTAAATTTAT 57.959 29.630 0.00 0.00 0.00 1.40
387 391 9.541143 AGTTTGTCTTGTTGGTTAAATTTATGG 57.459 29.630 0.00 0.00 0.00 2.74
388 392 9.320352 GTTTGTCTTGTTGGTTAAATTTATGGT 57.680 29.630 0.00 0.00 0.00 3.55
389 393 9.535878 TTTGTCTTGTTGGTTAAATTTATGGTC 57.464 29.630 0.00 0.00 0.00 4.02
390 394 8.239038 TGTCTTGTTGGTTAAATTTATGGTCA 57.761 30.769 0.00 0.00 0.00 4.02
391 395 8.696374 TGTCTTGTTGGTTAAATTTATGGTCAA 58.304 29.630 0.00 0.00 0.00 3.18
392 396 9.535878 GTCTTGTTGGTTAAATTTATGGTCAAA 57.464 29.630 0.00 0.00 0.00 2.69
393 397 9.757227 TCTTGTTGGTTAAATTTATGGTCAAAG 57.243 29.630 0.00 1.33 0.00 2.77
394 398 9.541143 CTTGTTGGTTAAATTTATGGTCAAAGT 57.459 29.630 0.00 0.00 0.00 2.66
395 399 9.892130 TTGTTGGTTAAATTTATGGTCAAAGTT 57.108 25.926 0.00 0.00 31.36 2.66
396 400 9.319143 TGTTGGTTAAATTTATGGTCAAAGTTG 57.681 29.630 0.00 0.00 29.44 3.16
397 401 9.535878 GTTGGTTAAATTTATGGTCAAAGTTGA 57.464 29.630 0.00 0.00 34.20 3.18
403 407 8.970691 AAATTTATGGTCAAAGTTGAATCTCG 57.029 30.769 0.00 0.00 39.21 4.04
404 408 7.921786 ATTTATGGTCAAAGTTGAATCTCGA 57.078 32.000 0.00 0.00 39.21 4.04
405 409 7.737972 TTTATGGTCAAAGTTGAATCTCGAA 57.262 32.000 0.00 0.00 39.21 3.71
406 410 7.737972 TTATGGTCAAAGTTGAATCTCGAAA 57.262 32.000 0.00 0.00 39.21 3.46
407 411 6.633500 ATGGTCAAAGTTGAATCTCGAAAA 57.367 33.333 0.00 0.00 39.21 2.29
408 412 6.060028 TGGTCAAAGTTGAATCTCGAAAAG 57.940 37.500 0.00 0.00 39.21 2.27
409 413 4.912187 GGTCAAAGTTGAATCTCGAAAAGC 59.088 41.667 0.00 0.00 39.21 3.51
410 414 5.505654 GGTCAAAGTTGAATCTCGAAAAGCA 60.506 40.000 0.00 0.00 39.21 3.91
411 415 5.396654 GTCAAAGTTGAATCTCGAAAAGCAC 59.603 40.000 0.00 0.00 39.21 4.40
412 416 3.795561 AGTTGAATCTCGAAAAGCACG 57.204 42.857 0.00 0.00 0.00 5.34
413 417 2.480419 AGTTGAATCTCGAAAAGCACGG 59.520 45.455 0.00 0.00 0.00 4.94
414 418 2.163818 TGAATCTCGAAAAGCACGGT 57.836 45.000 0.00 0.00 0.00 4.83
415 419 2.066262 TGAATCTCGAAAAGCACGGTC 58.934 47.619 0.00 0.00 0.00 4.79
416 420 1.059264 GAATCTCGAAAAGCACGGTCG 59.941 52.381 0.00 0.00 36.12 4.79
417 421 1.352156 ATCTCGAAAAGCACGGTCGC 61.352 55.000 0.00 0.00 34.80 5.19
418 422 2.279584 TCGAAAAGCACGGTCGCA 60.280 55.556 5.59 0.00 34.80 5.10
419 423 2.127758 CGAAAAGCACGGTCGCAC 60.128 61.111 5.59 0.00 0.00 5.34
420 424 2.594962 CGAAAAGCACGGTCGCACT 61.595 57.895 5.59 0.00 0.00 4.40
421 425 1.279527 CGAAAAGCACGGTCGCACTA 61.280 55.000 5.59 0.00 0.00 2.74
422 426 1.076332 GAAAAGCACGGTCGCACTAT 58.924 50.000 5.59 0.00 0.00 2.12
423 427 2.264813 GAAAAGCACGGTCGCACTATA 58.735 47.619 5.59 0.00 0.00 1.31
424 428 2.596904 AAAGCACGGTCGCACTATAT 57.403 45.000 5.59 0.00 0.00 0.86
425 429 2.596904 AAGCACGGTCGCACTATATT 57.403 45.000 5.59 0.00 0.00 1.28
426 430 2.596904 AGCACGGTCGCACTATATTT 57.403 45.000 5.59 0.00 0.00 1.40
427 431 2.901249 AGCACGGTCGCACTATATTTT 58.099 42.857 5.59 0.00 0.00 1.82
428 432 2.607635 AGCACGGTCGCACTATATTTTG 59.392 45.455 5.59 0.00 0.00 2.44
429 433 2.605818 GCACGGTCGCACTATATTTTGA 59.394 45.455 0.00 0.00 0.00 2.69
430 434 3.062909 GCACGGTCGCACTATATTTTGAA 59.937 43.478 0.00 0.00 0.00 2.69
431 435 4.436317 GCACGGTCGCACTATATTTTGAAA 60.436 41.667 0.00 0.00 0.00 2.69
432 436 5.729454 GCACGGTCGCACTATATTTTGAAAT 60.729 40.000 0.00 0.00 0.00 2.17
433 437 5.676744 CACGGTCGCACTATATTTTGAAATG 59.323 40.000 0.00 0.00 0.00 2.32
434 438 5.204833 CGGTCGCACTATATTTTGAAATGG 58.795 41.667 0.00 0.00 0.00 3.16
435 439 5.007234 CGGTCGCACTATATTTTGAAATGGA 59.993 40.000 0.00 0.00 0.00 3.41
436 440 6.430451 GGTCGCACTATATTTTGAAATGGAG 58.570 40.000 0.00 0.06 0.00 3.86
437 441 6.430451 GTCGCACTATATTTTGAAATGGAGG 58.570 40.000 0.00 0.00 0.00 4.30
438 442 5.530915 TCGCACTATATTTTGAAATGGAGGG 59.469 40.000 0.00 0.00 0.00 4.30
439 443 5.530915 CGCACTATATTTTGAAATGGAGGGA 59.469 40.000 0.00 0.00 0.00 4.20
440 444 6.293626 CGCACTATATTTTGAAATGGAGGGAG 60.294 42.308 0.00 0.00 0.00 4.30
441 445 6.547510 GCACTATATTTTGAAATGGAGGGAGT 59.452 38.462 0.00 0.00 0.00 3.85
453 457 4.816048 TGGAGGGAGTACTCATCAGTAT 57.184 45.455 23.91 1.75 37.45 2.12
638 642 2.612672 GCTTATTTTGGCTAGTCCGACC 59.387 50.000 0.00 0.00 37.80 4.79
665 669 6.777213 TTTTAGGACGCTTCTCTTCTCTAT 57.223 37.500 0.00 0.00 0.00 1.98
678 683 4.411927 TCTTCTCTATATGCTGGGGAGTC 58.588 47.826 0.00 0.00 0.00 3.36
843 2543 1.072505 GCCCTCGTTGGACTTGGAA 59.927 57.895 0.00 0.00 38.35 3.53
844 2544 0.955919 GCCCTCGTTGGACTTGGAAG 60.956 60.000 0.00 0.00 38.35 3.46
849 2549 3.821033 CCTCGTTGGACTTGGAAGAAAAT 59.179 43.478 0.00 0.00 38.35 1.82
870 2570 0.861837 GTCAGACGCTCACACAAAGG 59.138 55.000 0.00 0.00 0.00 3.11
876 2576 1.507141 CGCTCACACAAAGGGGTCAC 61.507 60.000 0.00 0.00 0.00 3.67
887 2587 1.179814 AGGGGTCACGTCAGTCACTC 61.180 60.000 0.00 0.00 0.00 3.51
1414 3138 3.130516 CGAGACCATAAGTAAGCTCACCA 59.869 47.826 0.00 0.00 0.00 4.17
1438 3178 2.029073 CCGACAGTTCACCACGCT 59.971 61.111 0.00 0.00 0.00 5.07
1446 3186 6.376177 CGACAGTTCACCACGCTTATATATA 58.624 40.000 0.00 0.00 0.00 0.86
1503 3243 7.096884 TGAGCTTGTACTACTACGAAATGAT 57.903 36.000 0.00 0.00 0.00 2.45
1578 3318 4.394078 CGACGAACGCGGAGTGGA 62.394 66.667 12.47 0.00 45.78 4.02
1761 3501 1.556591 GATGAACAGCGTGCACGACA 61.557 55.000 41.19 28.01 43.02 4.35
1923 3663 0.543749 GACCAGCCTCACCTGCTAAT 59.456 55.000 0.00 0.00 36.81 1.73
1924 3664 0.995024 ACCAGCCTCACCTGCTAATT 59.005 50.000 0.00 0.00 36.81 1.40
1925 3665 2.170607 GACCAGCCTCACCTGCTAATTA 59.829 50.000 0.00 0.00 36.81 1.40
1926 3666 2.576191 ACCAGCCTCACCTGCTAATTAA 59.424 45.455 0.00 0.00 36.81 1.40
2007 3753 6.332735 TCGGACAGACATATTCAGGATAAG 57.667 41.667 0.00 0.00 0.00 1.73
2025 3771 6.038714 AGGATAAGATTGCTTTCGGATTTGAC 59.961 38.462 0.00 0.00 35.56 3.18
2035 3935 6.312918 TGCTTTCGGATTTGACACTATACTTC 59.687 38.462 0.00 0.00 0.00 3.01
2096 7340 4.699522 GTCTGGCGACCACCCACC 62.700 72.222 0.00 0.00 33.98 4.61
2109 7353 2.528564 CACCCACCAAAGGTTCATCAT 58.471 47.619 0.00 0.00 34.56 2.45
2165 7409 0.315886 TTCGGTCTTCTTGTAGCGCA 59.684 50.000 11.47 0.00 36.60 6.09
2166 7410 0.315886 TCGGTCTTCTTGTAGCGCAA 59.684 50.000 11.47 0.00 36.60 4.85
2184 7428 2.159037 GCAAACACGAAGCCTTAGGTAC 59.841 50.000 0.00 0.00 0.00 3.34
2185 7429 3.395639 CAAACACGAAGCCTTAGGTACA 58.604 45.455 0.00 0.00 0.00 2.90
2198 7512 8.959705 AGCCTTAGGTACATGACTTTAAATAC 57.040 34.615 0.00 0.00 0.00 1.89
2367 7708 4.632251 GGCATGCATGAAAAATGTCATTCA 59.368 37.500 30.64 0.00 36.04 2.57
2462 7915 7.521529 AGAGTGTCATGATAACAAAATTGACG 58.478 34.615 0.00 0.00 36.01 4.35
2585 8039 8.057011 ACAAAAGTAAAAGAAAAGGAGGGTAGA 58.943 33.333 0.00 0.00 0.00 2.59
2587 8041 5.791666 AGTAAAAGAAAAGGAGGGTAGACG 58.208 41.667 0.00 0.00 0.00 4.18
2598 8052 1.663739 GGTAGACGTGGCACAGTGA 59.336 57.895 19.09 4.41 41.80 3.41
2628 8082 1.517242 CTCACTTGTGCCAAGAGGTC 58.483 55.000 18.22 0.00 37.19 3.85
2631 8085 1.347707 CACTTGTGCCAAGAGGTCCTA 59.652 52.381 18.22 0.00 37.19 2.94
2657 8111 1.736681 GAACCAGTCTCTCTGCATTGC 59.263 52.381 0.46 0.46 42.38 3.56
2659 8113 1.072806 ACCAGTCTCTCTGCATTGCAA 59.927 47.619 13.18 0.00 42.38 4.08
2680 8134 2.385803 TGTAGCAGGGGTAAGACTAGC 58.614 52.381 0.00 0.00 0.00 3.42
2681 8135 2.291996 TGTAGCAGGGGTAAGACTAGCA 60.292 50.000 0.00 0.00 0.00 3.49
2682 8136 1.196012 AGCAGGGGTAAGACTAGCAC 58.804 55.000 0.00 0.00 0.00 4.40
2683 8137 1.196012 GCAGGGGTAAGACTAGCACT 58.804 55.000 0.00 0.00 39.96 4.40
2685 8139 1.867363 AGGGGTAAGACTAGCACTGG 58.133 55.000 0.00 0.00 37.88 4.00
2686 8140 0.178301 GGGGTAAGACTAGCACTGGC 59.822 60.000 0.00 0.00 41.61 4.85
2703 8157 4.069232 CGGAGCTTCGTGAGGGCA 62.069 66.667 6.14 0.00 33.94 5.36
2704 8158 2.347490 GGAGCTTCGTGAGGGCAA 59.653 61.111 0.00 0.00 33.94 4.52
2705 8159 1.302511 GGAGCTTCGTGAGGGCAAA 60.303 57.895 0.00 0.00 33.94 3.68
2706 8160 0.889186 GGAGCTTCGTGAGGGCAAAA 60.889 55.000 0.00 0.00 33.94 2.44
2707 8161 0.519077 GAGCTTCGTGAGGGCAAAAG 59.481 55.000 0.00 0.00 33.94 2.27
2708 8162 1.081175 GCTTCGTGAGGGCAAAAGC 60.081 57.895 0.00 0.00 37.67 3.51
2709 8163 1.207593 CTTCGTGAGGGCAAAAGCG 59.792 57.895 0.00 0.00 0.00 4.68
2710 8164 1.507141 CTTCGTGAGGGCAAAAGCGT 61.507 55.000 0.00 0.00 0.00 5.07
2711 8165 1.781025 TTCGTGAGGGCAAAAGCGTG 61.781 55.000 0.00 0.00 0.00 5.34
2712 8166 2.050077 GTGAGGGCAAAAGCGTGC 60.050 61.111 1.88 1.88 44.14 5.34
2718 8172 3.113979 GCAAAAGCGTGCCATGGC 61.114 61.111 30.54 30.54 38.66 4.40
2719 8173 2.432972 CAAAAGCGTGCCATGGCC 60.433 61.111 33.44 22.58 41.09 5.36
2720 8174 3.694538 AAAAGCGTGCCATGGCCC 61.695 61.111 33.44 22.39 41.09 5.80
2739 8193 3.338250 CCCAGCCCCAGCAGGTAA 61.338 66.667 0.00 0.00 43.98 2.85
2740 8194 2.693871 CCCAGCCCCAGCAGGTAAT 61.694 63.158 0.00 0.00 43.98 1.89
2741 8195 1.352622 CCCAGCCCCAGCAGGTAATA 61.353 60.000 0.00 0.00 43.98 0.98
2742 8196 0.179018 CCAGCCCCAGCAGGTAATAC 60.179 60.000 0.00 0.00 40.68 1.89
2743 8197 0.532862 CAGCCCCAGCAGGTAATACG 60.533 60.000 0.00 0.00 43.56 3.06
2744 8198 0.981277 AGCCCCAGCAGGTAATACGT 60.981 55.000 0.00 0.00 43.56 3.57
2745 8199 0.754472 GCCCCAGCAGGTAATACGTA 59.246 55.000 0.00 0.00 39.53 3.57
2746 8200 1.539712 GCCCCAGCAGGTAATACGTAC 60.540 57.143 0.00 0.00 39.53 3.67
2747 8201 1.758280 CCCCAGCAGGTAATACGTACA 59.242 52.381 0.00 0.00 34.01 2.90
2748 8202 2.367567 CCCCAGCAGGTAATACGTACAT 59.632 50.000 0.00 0.00 34.01 2.29
2749 8203 3.575256 CCCCAGCAGGTAATACGTACATA 59.425 47.826 0.00 0.00 34.01 2.29
2750 8204 4.222145 CCCCAGCAGGTAATACGTACATAT 59.778 45.833 0.00 0.00 34.01 1.78
2751 8205 5.419788 CCCCAGCAGGTAATACGTACATATA 59.580 44.000 0.00 0.00 34.01 0.86
2752 8206 6.327934 CCCAGCAGGTAATACGTACATATAC 58.672 44.000 0.00 0.00 34.01 1.47
2753 8207 6.152323 CCCAGCAGGTAATACGTACATATACT 59.848 42.308 0.00 0.00 34.01 2.12
2754 8208 7.337689 CCCAGCAGGTAATACGTACATATACTA 59.662 40.741 0.00 0.00 34.01 1.82
2755 8209 8.180267 CCAGCAGGTAATACGTACATATACTAC 58.820 40.741 0.00 0.00 34.01 2.73
2756 8210 8.944029 CAGCAGGTAATACGTACATATACTACT 58.056 37.037 0.00 0.00 34.01 2.57
2757 8211 9.512588 AGCAGGTAATACGTACATATACTACTT 57.487 33.333 0.00 0.00 34.01 2.24
2764 8218 6.566197 ACGTACATATACTACTTACAGCCC 57.434 41.667 0.00 0.00 0.00 5.19
2765 8219 6.064060 ACGTACATATACTACTTACAGCCCA 58.936 40.000 0.00 0.00 0.00 5.36
2766 8220 6.206243 ACGTACATATACTACTTACAGCCCAG 59.794 42.308 0.00 0.00 0.00 4.45
2767 8221 5.470047 ACATATACTACTTACAGCCCAGC 57.530 43.478 0.00 0.00 0.00 4.85
2768 8222 4.283722 ACATATACTACTTACAGCCCAGCC 59.716 45.833 0.00 0.00 0.00 4.85
2769 8223 1.492764 TACTACTTACAGCCCAGCCC 58.507 55.000 0.00 0.00 0.00 5.19
2770 8224 0.546747 ACTACTTACAGCCCAGCCCA 60.547 55.000 0.00 0.00 0.00 5.36
2771 8225 0.107654 CTACTTACAGCCCAGCCCAC 60.108 60.000 0.00 0.00 0.00 4.61
2772 8226 1.895020 TACTTACAGCCCAGCCCACG 61.895 60.000 0.00 0.00 0.00 4.94
2773 8227 2.925706 TTACAGCCCAGCCCACGA 60.926 61.111 0.00 0.00 0.00 4.35
2774 8228 3.248446 TTACAGCCCAGCCCACGAC 62.248 63.158 0.00 0.00 0.00 4.34
2779 8233 4.415150 CCCAGCCCACGACTGCAT 62.415 66.667 0.00 0.00 33.65 3.96
2780 8234 2.821366 CCAGCCCACGACTGCATC 60.821 66.667 0.00 0.00 33.65 3.91
2781 8235 2.267006 CAGCCCACGACTGCATCT 59.733 61.111 0.00 0.00 0.00 2.90
2782 8236 1.812922 CAGCCCACGACTGCATCTC 60.813 63.158 0.00 0.00 0.00 2.75
2783 8237 1.986757 AGCCCACGACTGCATCTCT 60.987 57.895 0.00 0.00 0.00 3.10
2784 8238 1.520342 GCCCACGACTGCATCTCTC 60.520 63.158 0.00 0.00 0.00 3.20
2785 8239 1.226802 CCCACGACTGCATCTCTCG 60.227 63.158 0.00 0.00 0.00 4.04
2786 8240 1.875813 CCACGACTGCATCTCTCGC 60.876 63.158 0.00 0.00 0.00 5.03
2787 8241 1.138459 CACGACTGCATCTCTCGCT 59.862 57.895 0.00 0.00 0.00 4.93
2788 8242 0.865218 CACGACTGCATCTCTCGCTC 60.865 60.000 0.00 0.00 0.00 5.03
2789 8243 1.653835 CGACTGCATCTCTCGCTCG 60.654 63.158 0.00 0.00 0.00 5.03
2790 8244 1.943693 GACTGCATCTCTCGCTCGC 60.944 63.158 0.00 0.00 0.00 5.03
2791 8245 2.103736 CTGCATCTCTCGCTCGCA 59.896 61.111 0.00 0.00 0.00 5.10
2792 8246 1.945169 CTGCATCTCTCGCTCGCAG 60.945 63.158 0.00 0.00 43.55 5.18
2793 8247 3.329301 GCATCTCTCGCTCGCAGC 61.329 66.667 0.00 0.00 38.02 5.25
2794 8248 2.103736 CATCTCTCGCTCGCAGCA 59.896 61.111 8.52 0.00 42.58 4.41
2795 8249 2.103934 ATCTCTCGCTCGCAGCAC 59.896 61.111 8.52 0.00 42.58 4.40
2796 8250 3.423162 ATCTCTCGCTCGCAGCACC 62.423 63.158 8.52 0.00 42.58 5.01
2797 8251 4.426112 CTCTCGCTCGCAGCACCA 62.426 66.667 8.52 0.00 42.58 4.17
2798 8252 4.724602 TCTCGCTCGCAGCACCAC 62.725 66.667 8.52 0.00 42.58 4.16
2803 8257 4.363990 CTCGCAGCACCACCTCGT 62.364 66.667 0.00 0.00 0.00 4.18
2804 8258 4.357947 TCGCAGCACCACCTCGTC 62.358 66.667 0.00 0.00 0.00 4.20
2805 8259 4.662961 CGCAGCACCACCTCGTCA 62.663 66.667 0.00 0.00 0.00 4.35
2806 8260 3.044305 GCAGCACCACCTCGTCAC 61.044 66.667 0.00 0.00 0.00 3.67
2807 8261 2.734723 CAGCACCACCTCGTCACG 60.735 66.667 0.00 0.00 0.00 4.35
2808 8262 4.664677 AGCACCACCTCGTCACGC 62.665 66.667 0.00 0.00 0.00 5.34
2809 8263 4.664677 GCACCACCTCGTCACGCT 62.665 66.667 0.00 0.00 0.00 5.07
2810 8264 2.029073 CACCACCTCGTCACGCTT 59.971 61.111 0.00 0.00 0.00 4.68
2811 8265 2.022129 CACCACCTCGTCACGCTTC 61.022 63.158 0.00 0.00 0.00 3.86
2812 8266 2.201022 ACCACCTCGTCACGCTTCT 61.201 57.895 0.00 0.00 0.00 2.85
2813 8267 1.444553 CCACCTCGTCACGCTTCTC 60.445 63.158 0.00 0.00 0.00 2.87
2814 8268 1.581954 CACCTCGTCACGCTTCTCT 59.418 57.895 0.00 0.00 0.00 3.10
2815 8269 0.455295 CACCTCGTCACGCTTCTCTC 60.455 60.000 0.00 0.00 0.00 3.20
2816 8270 1.137825 CCTCGTCACGCTTCTCTCC 59.862 63.158 0.00 0.00 0.00 3.71
2817 8271 1.309499 CCTCGTCACGCTTCTCTCCT 61.309 60.000 0.00 0.00 0.00 3.69
2818 8272 0.523966 CTCGTCACGCTTCTCTCCTT 59.476 55.000 0.00 0.00 0.00 3.36
2819 8273 0.522180 TCGTCACGCTTCTCTCCTTC 59.478 55.000 0.00 0.00 0.00 3.46
2820 8274 0.794981 CGTCACGCTTCTCTCCTTCG 60.795 60.000 0.00 0.00 0.00 3.79
2821 8275 1.073768 GTCACGCTTCTCTCCTTCGC 61.074 60.000 0.00 0.00 0.00 4.70
2822 8276 1.080501 CACGCTTCTCTCCTTCGCA 60.081 57.895 0.00 0.00 0.00 5.10
2823 8277 0.459237 CACGCTTCTCTCCTTCGCAT 60.459 55.000 0.00 0.00 0.00 4.73
2824 8278 0.459237 ACGCTTCTCTCCTTCGCATG 60.459 55.000 0.00 0.00 0.00 4.06
2825 8279 1.760268 CGCTTCTCTCCTTCGCATGC 61.760 60.000 7.91 7.91 0.00 4.06
2826 8280 0.742281 GCTTCTCTCCTTCGCATGCA 60.742 55.000 19.57 1.73 0.00 3.96
2827 8281 1.288350 CTTCTCTCCTTCGCATGCAG 58.712 55.000 19.57 8.36 0.00 4.41
2828 8282 0.742281 TTCTCTCCTTCGCATGCAGC 60.742 55.000 19.57 0.00 40.87 5.25
2829 8283 2.124983 TCTCCTTCGCATGCAGCC 60.125 61.111 19.57 0.00 41.38 4.85
2830 8284 2.437180 CTCCTTCGCATGCAGCCA 60.437 61.111 19.57 0.00 41.38 4.75
2831 8285 2.747460 TCCTTCGCATGCAGCCAC 60.747 61.111 19.57 0.00 41.38 5.01
2832 8286 4.170062 CCTTCGCATGCAGCCACG 62.170 66.667 19.57 0.00 41.38 4.94
2833 8287 3.120385 CTTCGCATGCAGCCACGA 61.120 61.111 19.57 2.18 41.38 4.35
2834 8288 2.436469 TTCGCATGCAGCCACGAT 60.436 55.556 19.57 0.00 41.38 3.73
2835 8289 2.370824 CTTCGCATGCAGCCACGATC 62.371 60.000 19.57 0.00 41.38 3.69
2836 8290 4.289379 CGCATGCAGCCACGATCG 62.289 66.667 19.57 14.88 41.38 3.69
2837 8291 4.602696 GCATGCAGCCACGATCGC 62.603 66.667 16.60 0.00 37.23 4.58
2838 8292 2.893895 CATGCAGCCACGATCGCT 60.894 61.111 16.60 0.59 36.91 4.93
2839 8293 2.587194 ATGCAGCCACGATCGCTC 60.587 61.111 16.60 4.29 33.17 5.03
2840 8294 3.086391 ATGCAGCCACGATCGCTCT 62.086 57.895 16.60 6.79 33.17 4.09
2841 8295 1.738346 ATGCAGCCACGATCGCTCTA 61.738 55.000 16.60 0.00 33.17 2.43
2842 8296 1.006805 GCAGCCACGATCGCTCTAT 60.007 57.895 16.60 0.00 33.17 1.98
2843 8297 1.280886 GCAGCCACGATCGCTCTATG 61.281 60.000 16.60 9.15 33.17 2.23
2844 8298 1.006805 AGCCACGATCGCTCTATGC 60.007 57.895 16.60 8.86 38.57 3.14
2845 8299 2.024319 GCCACGATCGCTCTATGCC 61.024 63.158 16.60 0.00 38.78 4.40
2846 8300 1.373497 CCACGATCGCTCTATGCCC 60.373 63.158 16.60 0.00 38.78 5.36
2847 8301 1.662608 CACGATCGCTCTATGCCCT 59.337 57.895 16.60 0.00 38.78 5.19
2848 8302 0.387878 CACGATCGCTCTATGCCCTC 60.388 60.000 16.60 0.00 38.78 4.30
2849 8303 1.214062 CGATCGCTCTATGCCCTCC 59.786 63.158 0.26 0.00 38.78 4.30
2850 8304 1.594310 GATCGCTCTATGCCCTCCC 59.406 63.158 0.00 0.00 38.78 4.30
2851 8305 1.893919 GATCGCTCTATGCCCTCCCC 61.894 65.000 0.00 0.00 38.78 4.81
2852 8306 3.631046 CGCTCTATGCCCTCCCCC 61.631 72.222 0.00 0.00 38.78 5.40
2868 8322 3.155897 CCCCCTCGATTCCTCATCT 57.844 57.895 0.00 0.00 0.00 2.90
2869 8323 1.428869 CCCCCTCGATTCCTCATCTT 58.571 55.000 0.00 0.00 0.00 2.40
2870 8324 2.609747 CCCCCTCGATTCCTCATCTTA 58.390 52.381 0.00 0.00 0.00 2.10
2871 8325 3.177228 CCCCCTCGATTCCTCATCTTAT 58.823 50.000 0.00 0.00 0.00 1.73
2872 8326 4.353777 CCCCCTCGATTCCTCATCTTATA 58.646 47.826 0.00 0.00 0.00 0.98
2873 8327 4.160626 CCCCCTCGATTCCTCATCTTATAC 59.839 50.000 0.00 0.00 0.00 1.47
2874 8328 4.772624 CCCCTCGATTCCTCATCTTATACA 59.227 45.833 0.00 0.00 0.00 2.29
2875 8329 5.105554 CCCCTCGATTCCTCATCTTATACAG 60.106 48.000 0.00 0.00 0.00 2.74
2876 8330 5.406649 CCTCGATTCCTCATCTTATACAGC 58.593 45.833 0.00 0.00 0.00 4.40
2877 8331 5.047731 CCTCGATTCCTCATCTTATACAGCA 60.048 44.000 0.00 0.00 0.00 4.41
2878 8332 6.018589 TCGATTCCTCATCTTATACAGCAG 57.981 41.667 0.00 0.00 0.00 4.24
2879 8333 5.770162 TCGATTCCTCATCTTATACAGCAGA 59.230 40.000 0.00 0.00 0.00 4.26
2880 8334 6.072230 TCGATTCCTCATCTTATACAGCAGAG 60.072 42.308 0.00 0.00 0.00 3.35
2881 8335 6.294453 CGATTCCTCATCTTATACAGCAGAGT 60.294 42.308 0.00 0.00 0.00 3.24
2882 8336 5.781210 TCCTCATCTTATACAGCAGAGTG 57.219 43.478 0.00 0.00 0.00 3.51
2883 8337 4.038522 TCCTCATCTTATACAGCAGAGTGC 59.961 45.833 0.00 0.00 45.46 4.40
2893 8347 3.047752 GCAGAGTGCAGAGTAGCTG 57.952 57.895 0.00 0.00 44.26 4.24
2903 8357 4.576873 GTGCAGAGTAGCTGACTGATACTA 59.423 45.833 16.73 0.00 46.54 1.82
2904 8358 4.819088 TGCAGAGTAGCTGACTGATACTAG 59.181 45.833 16.73 7.52 46.54 2.57
2905 8359 4.819630 GCAGAGTAGCTGACTGATACTAGT 59.180 45.833 16.73 0.00 46.54 2.57
2906 8360 5.277779 GCAGAGTAGCTGACTGATACTAGTG 60.278 48.000 16.73 11.11 46.54 2.74
2907 8361 4.819630 AGAGTAGCTGACTGATACTAGTGC 59.180 45.833 5.39 0.00 46.54 4.40
2908 8362 4.527944 AGTAGCTGACTGATACTAGTGCA 58.472 43.478 5.39 2.82 44.97 4.57
2909 8363 5.136828 AGTAGCTGACTGATACTAGTGCAT 58.863 41.667 5.39 0.00 44.97 3.96
2910 8364 4.319139 AGCTGACTGATACTAGTGCATG 57.681 45.455 5.39 0.00 0.00 4.06
2911 8365 3.069300 AGCTGACTGATACTAGTGCATGG 59.931 47.826 5.39 0.00 0.00 3.66
2912 8366 3.801638 GCTGACTGATACTAGTGCATGGG 60.802 52.174 5.39 0.00 0.00 4.00
2913 8367 3.374764 TGACTGATACTAGTGCATGGGT 58.625 45.455 5.39 0.00 0.00 4.51
2914 8368 3.384789 TGACTGATACTAGTGCATGGGTC 59.615 47.826 5.39 8.20 0.00 4.46
2915 8369 3.374764 ACTGATACTAGTGCATGGGTCA 58.625 45.455 5.39 0.00 0.00 4.02
2916 8370 3.133003 ACTGATACTAGTGCATGGGTCAC 59.867 47.826 5.39 0.00 34.80 3.67
2917 8371 2.100749 TGATACTAGTGCATGGGTCACG 59.899 50.000 5.39 0.00 39.31 4.35
2918 8372 0.174845 TACTAGTGCATGGGTCACGC 59.825 55.000 5.39 0.00 39.31 5.34
2919 8373 2.125713 TAGTGCATGGGTCACGCG 60.126 61.111 3.53 3.53 39.31 6.01
2920 8374 2.835701 CTAGTGCATGGGTCACGCGT 62.836 60.000 5.58 5.58 39.31 6.01
2921 8375 4.088762 GTGCATGGGTCACGCGTG 62.089 66.667 32.76 32.76 36.58 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.482436 ACCGTTATGAGTTTCCAGCAAA 58.518 40.909 0.00 0.00 0.00 3.68
18 19 3.727419 GGCACGTACCGTTATGAGT 57.273 52.632 0.00 0.00 38.32 3.41
71 72 1.274596 CAGCCGCTGAAATTTCATGC 58.725 50.000 20.76 21.71 36.46 4.06
74 75 1.209898 CGCAGCCGCTGAAATTTCA 59.790 52.632 24.80 19.45 32.44 2.69
129 133 1.623542 ATCACTCGGTGGGTTAGGGC 61.624 60.000 4.52 0.00 33.87 5.19
130 134 0.178068 CATCACTCGGTGGGTTAGGG 59.822 60.000 4.52 0.00 33.87 3.53
131 135 0.178068 CCATCACTCGGTGGGTTAGG 59.822 60.000 4.52 0.00 33.87 2.69
132 136 3.760693 CCATCACTCGGTGGGTTAG 57.239 57.895 4.52 0.00 33.87 2.34
137 141 2.124983 CAGCCCATCACTCGGTGG 60.125 66.667 4.52 0.00 33.87 4.61
138 142 0.742281 CTTCAGCCCATCACTCGGTG 60.742 60.000 0.00 0.00 34.45 4.94
139 143 0.904865 TCTTCAGCCCATCACTCGGT 60.905 55.000 0.00 0.00 0.00 4.69
145 149 2.779430 ACCATACATCTTCAGCCCATCA 59.221 45.455 0.00 0.00 0.00 3.07
157 161 4.944930 AGAGAGATACGGCTACCATACATC 59.055 45.833 0.00 0.00 0.00 3.06
180 184 7.970102 AGTAAGATAAGTGTACCTTTGTTCCA 58.030 34.615 2.53 0.00 34.46 3.53
189 193 5.206587 TGGAGGGAGTAAGATAAGTGTACC 58.793 45.833 0.00 0.00 0.00 3.34
193 197 6.763610 GTGAAATGGAGGGAGTAAGATAAGTG 59.236 42.308 0.00 0.00 0.00 3.16
194 198 6.443849 TGTGAAATGGAGGGAGTAAGATAAGT 59.556 38.462 0.00 0.00 0.00 2.24
201 205 5.255397 ACATTGTGAAATGGAGGGAGTAA 57.745 39.130 3.70 0.00 34.56 2.24
204 208 4.637534 CACTACATTGTGAAATGGAGGGAG 59.362 45.833 13.76 2.00 45.41 4.30
205 209 4.588899 CACTACATTGTGAAATGGAGGGA 58.411 43.478 13.76 0.00 45.41 4.20
206 210 3.129287 GCACTACATTGTGAAATGGAGGG 59.871 47.826 13.76 11.18 45.36 4.30
207 211 4.012374 AGCACTACATTGTGAAATGGAGG 58.988 43.478 13.76 5.57 43.78 4.30
208 212 5.392380 GGAAGCACTACATTGTGAAATGGAG 60.392 44.000 8.77 8.77 44.77 3.86
209 213 4.458989 GGAAGCACTACATTGTGAAATGGA 59.541 41.667 0.00 0.00 40.12 3.41
210 214 4.460382 AGGAAGCACTACATTGTGAAATGG 59.540 41.667 0.00 0.00 40.12 3.16
211 215 5.413833 AGAGGAAGCACTACATTGTGAAATG 59.586 40.000 0.00 0.00 40.12 2.32
212 216 5.564550 AGAGGAAGCACTACATTGTGAAAT 58.435 37.500 0.00 0.00 40.12 2.17
213 217 4.973168 AGAGGAAGCACTACATTGTGAAA 58.027 39.130 0.00 0.00 40.12 2.69
216 220 5.525378 GGAATAGAGGAAGCACTACATTGTG 59.475 44.000 0.00 0.00 40.62 3.33
218 222 5.059833 GGGAATAGAGGAAGCACTACATTG 58.940 45.833 0.00 0.00 0.00 2.82
219 223 4.202264 CGGGAATAGAGGAAGCACTACATT 60.202 45.833 0.00 0.00 0.00 2.71
220 224 3.322254 CGGGAATAGAGGAAGCACTACAT 59.678 47.826 0.00 0.00 0.00 2.29
221 225 2.693591 CGGGAATAGAGGAAGCACTACA 59.306 50.000 0.00 0.00 0.00 2.74
222 226 2.694109 ACGGGAATAGAGGAAGCACTAC 59.306 50.000 0.00 0.00 0.00 2.73
223 227 2.693591 CACGGGAATAGAGGAAGCACTA 59.306 50.000 0.00 0.00 0.00 2.74
224 228 1.482593 CACGGGAATAGAGGAAGCACT 59.517 52.381 0.00 0.00 0.00 4.40
225 229 1.207329 ACACGGGAATAGAGGAAGCAC 59.793 52.381 0.00 0.00 0.00 4.40
226 230 1.568504 ACACGGGAATAGAGGAAGCA 58.431 50.000 0.00 0.00 0.00 3.91
227 231 2.693267 AACACGGGAATAGAGGAAGC 57.307 50.000 0.00 0.00 0.00 3.86
228 232 6.171213 AGTTAAAACACGGGAATAGAGGAAG 58.829 40.000 0.00 0.00 0.00 3.46
229 233 6.117975 AGTTAAAACACGGGAATAGAGGAA 57.882 37.500 0.00 0.00 0.00 3.36
230 234 5.750352 AGTTAAAACACGGGAATAGAGGA 57.250 39.130 0.00 0.00 0.00 3.71
231 235 6.428771 TCAAAGTTAAAACACGGGAATAGAGG 59.571 38.462 0.00 0.00 0.00 3.69
232 236 7.295930 GTCAAAGTTAAAACACGGGAATAGAG 58.704 38.462 0.00 0.00 0.00 2.43
233 237 6.205270 GGTCAAAGTTAAAACACGGGAATAGA 59.795 38.462 0.00 0.00 0.00 1.98
234 238 6.376177 GGTCAAAGTTAAAACACGGGAATAG 58.624 40.000 0.00 0.00 0.00 1.73
235 239 5.049543 CGGTCAAAGTTAAAACACGGGAATA 60.050 40.000 0.00 0.00 0.00 1.75
236 240 4.261280 CGGTCAAAGTTAAAACACGGGAAT 60.261 41.667 0.00 0.00 0.00 3.01
237 241 3.065095 CGGTCAAAGTTAAAACACGGGAA 59.935 43.478 0.00 0.00 0.00 3.97
238 242 2.613133 CGGTCAAAGTTAAAACACGGGA 59.387 45.455 0.00 0.00 0.00 5.14
239 243 2.355444 ACGGTCAAAGTTAAAACACGGG 59.645 45.455 0.00 0.00 0.00 5.28
240 244 3.678915 ACGGTCAAAGTTAAAACACGG 57.321 42.857 0.00 0.00 0.00 4.94
241 245 7.667984 AATTTACGGTCAAAGTTAAAACACG 57.332 32.000 0.00 0.00 0.00 4.49
248 252 9.553064 TGGTAGTTAAATTTACGGTCAAAGTTA 57.447 29.630 0.00 0.00 29.44 2.24
249 253 8.449251 TGGTAGTTAAATTTACGGTCAAAGTT 57.551 30.769 0.00 0.00 31.36 2.66
250 254 8.449251 TTGGTAGTTAAATTTACGGTCAAAGT 57.551 30.769 0.00 0.00 0.00 2.66
251 255 9.733219 TTTTGGTAGTTAAATTTACGGTCAAAG 57.267 29.630 0.00 0.00 0.00 2.77
252 256 9.513727 GTTTTGGTAGTTAAATTTACGGTCAAA 57.486 29.630 0.00 3.77 0.00 2.69
253 257 8.134261 GGTTTTGGTAGTTAAATTTACGGTCAA 58.866 33.333 0.00 0.00 0.00 3.18
254 258 7.519649 CGGTTTTGGTAGTTAAATTTACGGTCA 60.520 37.037 0.00 0.00 0.00 4.02
255 259 6.796552 CGGTTTTGGTAGTTAAATTTACGGTC 59.203 38.462 0.00 0.00 0.00 4.79
256 260 6.484977 TCGGTTTTGGTAGTTAAATTTACGGT 59.515 34.615 0.00 0.00 0.00 4.83
257 261 6.896969 TCGGTTTTGGTAGTTAAATTTACGG 58.103 36.000 0.00 0.00 0.00 4.02
258 262 8.842777 CAATCGGTTTTGGTAGTTAAATTTACG 58.157 33.333 0.00 0.00 0.00 3.18
259 263 9.681692 ACAATCGGTTTTGGTAGTTAAATTTAC 57.318 29.630 0.00 0.00 0.00 2.01
260 264 9.680315 CACAATCGGTTTTGGTAGTTAAATTTA 57.320 29.630 0.00 0.00 0.00 1.40
261 265 7.170151 GCACAATCGGTTTTGGTAGTTAAATTT 59.830 33.333 0.00 0.00 0.00 1.82
262 266 6.643360 GCACAATCGGTTTTGGTAGTTAAATT 59.357 34.615 0.00 0.00 0.00 1.82
263 267 6.015772 AGCACAATCGGTTTTGGTAGTTAAAT 60.016 34.615 0.00 0.00 0.00 1.40
264 268 5.299782 AGCACAATCGGTTTTGGTAGTTAAA 59.700 36.000 0.00 0.00 0.00 1.52
265 269 4.822896 AGCACAATCGGTTTTGGTAGTTAA 59.177 37.500 0.00 0.00 0.00 2.01
266 270 4.214545 CAGCACAATCGGTTTTGGTAGTTA 59.785 41.667 0.00 0.00 0.00 2.24
267 271 3.004315 CAGCACAATCGGTTTTGGTAGTT 59.996 43.478 0.00 0.00 0.00 2.24
268 272 2.552315 CAGCACAATCGGTTTTGGTAGT 59.448 45.455 0.00 0.00 0.00 2.73
269 273 2.811431 TCAGCACAATCGGTTTTGGTAG 59.189 45.455 0.00 0.00 0.00 3.18
270 274 2.811431 CTCAGCACAATCGGTTTTGGTA 59.189 45.455 0.00 0.00 0.00 3.25
271 275 1.608590 CTCAGCACAATCGGTTTTGGT 59.391 47.619 0.00 0.00 0.00 3.67
272 276 1.879380 TCTCAGCACAATCGGTTTTGG 59.121 47.619 0.00 0.00 0.00 3.28
273 277 2.666619 GCTCTCAGCACAATCGGTTTTG 60.667 50.000 0.00 0.00 41.89 2.44
274 278 1.537202 GCTCTCAGCACAATCGGTTTT 59.463 47.619 0.00 0.00 41.89 2.43
275 279 1.160137 GCTCTCAGCACAATCGGTTT 58.840 50.000 0.00 0.00 41.89 3.27
276 280 2.846371 GCTCTCAGCACAATCGGTT 58.154 52.632 0.00 0.00 41.89 4.44
277 281 4.606071 GCTCTCAGCACAATCGGT 57.394 55.556 0.00 0.00 41.89 4.69
286 290 7.576236 TCGCTAATATAATTTTTGCTCTCAGC 58.424 34.615 0.00 0.00 42.82 4.26
290 294 9.599322 CGAATTCGCTAATATAATTTTTGCTCT 57.401 29.630 15.93 0.00 0.00 4.09
291 295 9.382244 ACGAATTCGCTAATATAATTTTTGCTC 57.618 29.630 27.03 0.00 44.43 4.26
346 350 1.104577 AAACTGCGGCGGGAGAAAAA 61.105 50.000 19.55 0.00 35.29 1.94
347 351 1.527380 AAACTGCGGCGGGAGAAAA 60.527 52.632 19.55 0.00 35.29 2.29
348 352 2.112297 AAACTGCGGCGGGAGAAA 59.888 55.556 19.55 0.00 35.29 2.52
349 353 2.668212 CAAACTGCGGCGGGAGAA 60.668 61.111 19.55 0.00 35.29 2.87
350 354 3.876589 GACAAACTGCGGCGGGAGA 62.877 63.158 19.55 0.00 35.29 3.71
351 355 3.423154 GACAAACTGCGGCGGGAG 61.423 66.667 14.26 11.31 37.67 4.30
352 356 3.469863 AAGACAAACTGCGGCGGGA 62.470 57.895 14.26 0.00 0.00 5.14
353 357 2.978010 AAGACAAACTGCGGCGGG 60.978 61.111 14.26 2.36 0.00 6.13
354 358 2.058829 AACAAGACAAACTGCGGCGG 62.059 55.000 9.78 7.39 0.00 6.13
355 359 0.929824 CAACAAGACAAACTGCGGCG 60.930 55.000 0.51 0.51 0.00 6.46
356 360 0.594796 CCAACAAGACAAACTGCGGC 60.595 55.000 0.00 0.00 0.00 6.53
357 361 0.738389 ACCAACAAGACAAACTGCGG 59.262 50.000 0.00 0.00 0.00 5.69
358 362 2.559998 AACCAACAAGACAAACTGCG 57.440 45.000 0.00 0.00 0.00 5.18
359 363 6.902224 AATTTAACCAACAAGACAAACTGC 57.098 33.333 0.00 0.00 0.00 4.40
361 365 9.541143 CCATAAATTTAACCAACAAGACAAACT 57.459 29.630 1.21 0.00 0.00 2.66
362 366 9.320352 ACCATAAATTTAACCAACAAGACAAAC 57.680 29.630 1.21 0.00 0.00 2.93
363 367 9.535878 GACCATAAATTTAACCAACAAGACAAA 57.464 29.630 1.21 0.00 0.00 2.83
364 368 8.696374 TGACCATAAATTTAACCAACAAGACAA 58.304 29.630 1.21 0.00 0.00 3.18
365 369 8.239038 TGACCATAAATTTAACCAACAAGACA 57.761 30.769 1.21 0.00 0.00 3.41
366 370 9.535878 TTTGACCATAAATTTAACCAACAAGAC 57.464 29.630 1.21 0.00 0.00 3.01
367 371 9.757227 CTTTGACCATAAATTTAACCAACAAGA 57.243 29.630 1.21 0.00 0.00 3.02
368 372 9.541143 ACTTTGACCATAAATTTAACCAACAAG 57.459 29.630 1.21 4.46 0.00 3.16
369 373 9.892130 AACTTTGACCATAAATTTAACCAACAA 57.108 25.926 1.21 3.68 0.00 2.83
370 374 9.319143 CAACTTTGACCATAAATTTAACCAACA 57.681 29.630 1.21 0.00 0.00 3.33
371 375 9.535878 TCAACTTTGACCATAAATTTAACCAAC 57.464 29.630 1.21 0.00 31.01 3.77
378 382 8.792633 TCGAGATTCAACTTTGACCATAAATTT 58.207 29.630 0.00 0.00 36.83 1.82
379 383 8.335532 TCGAGATTCAACTTTGACCATAAATT 57.664 30.769 0.00 0.00 36.83 1.82
380 384 7.921786 TCGAGATTCAACTTTGACCATAAAT 57.078 32.000 0.00 0.00 36.83 1.40
381 385 7.737972 TTCGAGATTCAACTTTGACCATAAA 57.262 32.000 0.00 0.00 36.83 1.40
382 386 7.737972 TTTCGAGATTCAACTTTGACCATAA 57.262 32.000 0.00 0.00 36.83 1.90
383 387 7.573096 GCTTTTCGAGATTCAACTTTGACCATA 60.573 37.037 0.00 0.00 36.83 2.74
384 388 6.633500 TTTTCGAGATTCAACTTTGACCAT 57.367 33.333 0.00 0.00 36.83 3.55
385 389 5.505654 GCTTTTCGAGATTCAACTTTGACCA 60.506 40.000 0.00 0.00 36.83 4.02
386 390 4.912187 GCTTTTCGAGATTCAACTTTGACC 59.088 41.667 0.00 0.00 36.83 4.02
387 391 5.396654 GTGCTTTTCGAGATTCAACTTTGAC 59.603 40.000 0.00 0.00 36.83 3.18
388 392 5.510671 GTGCTTTTCGAGATTCAACTTTGA 58.489 37.500 0.00 0.00 34.92 2.69
389 393 4.376861 CGTGCTTTTCGAGATTCAACTTTG 59.623 41.667 0.00 0.00 0.00 2.77
390 394 4.527564 CGTGCTTTTCGAGATTCAACTTT 58.472 39.130 0.00 0.00 0.00 2.66
391 395 3.058914 CCGTGCTTTTCGAGATTCAACTT 60.059 43.478 0.00 0.00 0.00 2.66
392 396 2.480419 CCGTGCTTTTCGAGATTCAACT 59.520 45.455 0.00 0.00 0.00 3.16
393 397 2.223377 ACCGTGCTTTTCGAGATTCAAC 59.777 45.455 0.00 0.00 0.00 3.18
394 398 2.478894 GACCGTGCTTTTCGAGATTCAA 59.521 45.455 0.00 0.00 0.00 2.69
395 399 2.066262 GACCGTGCTTTTCGAGATTCA 58.934 47.619 0.00 0.00 0.00 2.57
396 400 1.059264 CGACCGTGCTTTTCGAGATTC 59.941 52.381 0.00 0.00 34.62 2.52
397 401 1.068474 CGACCGTGCTTTTCGAGATT 58.932 50.000 0.00 0.00 34.62 2.40
398 402 1.352156 GCGACCGTGCTTTTCGAGAT 61.352 55.000 0.00 0.00 34.62 2.75
399 403 2.019951 GCGACCGTGCTTTTCGAGA 61.020 57.895 0.00 0.00 34.62 4.04
400 404 2.307309 TGCGACCGTGCTTTTCGAG 61.307 57.895 0.00 0.00 34.62 4.04
401 405 2.279584 TGCGACCGTGCTTTTCGA 60.280 55.556 0.00 0.00 34.62 3.71
402 406 1.279527 TAGTGCGACCGTGCTTTTCG 61.280 55.000 0.00 0.00 35.36 3.46
403 407 1.076332 ATAGTGCGACCGTGCTTTTC 58.924 50.000 0.00 0.00 35.36 2.29
404 408 2.373540 TATAGTGCGACCGTGCTTTT 57.626 45.000 0.00 0.00 35.36 2.27
405 409 2.596904 ATATAGTGCGACCGTGCTTT 57.403 45.000 0.00 0.00 35.36 3.51
406 410 2.596904 AATATAGTGCGACCGTGCTT 57.403 45.000 0.00 0.00 35.36 3.91
407 411 2.596904 AAATATAGTGCGACCGTGCT 57.403 45.000 0.00 0.00 35.36 4.40
408 412 2.605818 TCAAAATATAGTGCGACCGTGC 59.394 45.455 0.00 0.00 0.00 5.34
409 413 4.850859 TTCAAAATATAGTGCGACCGTG 57.149 40.909 0.00 0.00 0.00 4.94
410 414 5.220777 CCATTTCAAAATATAGTGCGACCGT 60.221 40.000 0.00 0.00 0.00 4.83
411 415 5.007234 TCCATTTCAAAATATAGTGCGACCG 59.993 40.000 0.00 0.00 0.00 4.79
412 416 6.371809 TCCATTTCAAAATATAGTGCGACC 57.628 37.500 0.00 0.00 0.00 4.79
413 417 6.430451 CCTCCATTTCAAAATATAGTGCGAC 58.570 40.000 0.00 0.00 0.00 5.19
414 418 5.530915 CCCTCCATTTCAAAATATAGTGCGA 59.469 40.000 0.00 0.00 0.00 5.10
415 419 5.530915 TCCCTCCATTTCAAAATATAGTGCG 59.469 40.000 0.00 0.00 0.00 5.34
416 420 6.547510 ACTCCCTCCATTTCAAAATATAGTGC 59.452 38.462 0.00 0.00 0.00 4.40
417 421 9.057089 GTACTCCCTCCATTTCAAAATATAGTG 57.943 37.037 0.00 0.00 0.00 2.74
418 422 9.004231 AGTACTCCCTCCATTTCAAAATATAGT 57.996 33.333 0.00 0.00 0.00 2.12
419 423 9.495572 GAGTACTCCCTCCATTTCAAAATATAG 57.504 37.037 12.13 0.00 0.00 1.31
420 424 8.998814 TGAGTACTCCCTCCATTTCAAAATATA 58.001 33.333 20.11 0.00 0.00 0.86
421 425 7.872138 TGAGTACTCCCTCCATTTCAAAATAT 58.128 34.615 20.11 0.00 0.00 1.28
422 426 7.265599 TGAGTACTCCCTCCATTTCAAAATA 57.734 36.000 20.11 0.00 0.00 1.40
423 427 6.139679 TGAGTACTCCCTCCATTTCAAAAT 57.860 37.500 20.11 0.00 0.00 1.82
424 428 5.576563 TGAGTACTCCCTCCATTTCAAAA 57.423 39.130 20.11 0.00 0.00 2.44
425 429 5.250543 TGATGAGTACTCCCTCCATTTCAAA 59.749 40.000 20.11 0.00 0.00 2.69
426 430 4.782691 TGATGAGTACTCCCTCCATTTCAA 59.217 41.667 20.11 0.00 0.00 2.69
427 431 4.361783 TGATGAGTACTCCCTCCATTTCA 58.638 43.478 20.11 7.39 0.00 2.69
428 432 4.407296 ACTGATGAGTACTCCCTCCATTTC 59.593 45.833 20.11 5.18 0.00 2.17
429 433 4.366267 ACTGATGAGTACTCCCTCCATTT 58.634 43.478 20.11 1.23 0.00 2.32
430 434 4.000928 ACTGATGAGTACTCCCTCCATT 57.999 45.455 20.11 4.58 0.00 3.16
431 435 3.697190 ACTGATGAGTACTCCCTCCAT 57.303 47.619 20.11 7.06 0.00 3.41
432 436 4.816048 ATACTGATGAGTACTCCCTCCA 57.184 45.455 20.11 10.96 37.51 3.86
433 437 4.282195 CCAATACTGATGAGTACTCCCTCC 59.718 50.000 20.11 7.11 37.51 4.30
434 438 4.262249 GCCAATACTGATGAGTACTCCCTC 60.262 50.000 20.11 16.12 37.51 4.30
435 439 3.643792 GCCAATACTGATGAGTACTCCCT 59.356 47.826 20.11 7.57 37.51 4.20
436 440 3.244249 GGCCAATACTGATGAGTACTCCC 60.244 52.174 20.11 12.18 37.51 4.30
437 441 3.553096 CGGCCAATACTGATGAGTACTCC 60.553 52.174 20.11 6.32 37.51 3.85
438 442 3.068307 ACGGCCAATACTGATGAGTACTC 59.932 47.826 16.32 16.32 37.51 2.59
439 443 3.031736 ACGGCCAATACTGATGAGTACT 58.968 45.455 2.24 0.00 37.51 2.73
440 444 3.381949 GACGGCCAATACTGATGAGTAC 58.618 50.000 2.24 0.00 37.51 2.73
441 445 2.034179 CGACGGCCAATACTGATGAGTA 59.966 50.000 2.24 0.00 39.07 2.59
512 516 8.298030 AGCAAAATTGATACGAAAAGAAAAGG 57.702 30.769 0.00 0.00 0.00 3.11
513 517 9.571804 CAAGCAAAATTGATACGAAAAGAAAAG 57.428 29.630 0.00 0.00 31.55 2.27
574 578 3.053849 GAGGAGAGGGCGTCACGAC 62.054 68.421 0.00 0.00 0.00 4.34
638 642 7.262048 AGAGAAGAGAAGCGTCCTAAAAATAG 58.738 38.462 0.00 0.00 0.00 1.73
665 669 1.626356 GCCACAGACTCCCCAGCATA 61.626 60.000 0.00 0.00 0.00 3.14
843 2543 2.224281 TGTGAGCGTCTGACCATTTTCT 60.224 45.455 1.55 0.00 0.00 2.52
844 2544 2.096218 GTGTGAGCGTCTGACCATTTTC 60.096 50.000 1.55 0.00 0.00 2.29
849 2549 0.176910 TTTGTGTGAGCGTCTGACCA 59.823 50.000 1.55 0.00 0.00 4.02
870 2570 1.289380 GGAGTGACTGACGTGACCC 59.711 63.158 0.00 0.00 0.00 4.46
893 2593 4.191015 GGGTTCTCCGGATGGCCC 62.191 72.222 17.90 17.90 34.14 5.80
894 2594 1.128188 ATAGGGTTCTCCGGATGGCC 61.128 60.000 3.57 7.22 41.52 5.36
938 2638 0.647410 CCGTGTGATCGATGTCAAGC 59.353 55.000 0.54 0.00 0.00 4.01
1414 3138 4.578898 TGAACTGTCGGCGTGCGT 62.579 61.111 6.85 0.00 0.00 5.24
1446 3186 5.024118 GGGCTCGGGGCTACATATATATAT 58.976 45.833 9.45 0.00 41.46 0.86
1449 3189 2.246588 AGGGCTCGGGGCTACATATATA 59.753 50.000 9.45 0.00 41.46 0.86
1450 3190 1.008449 AGGGCTCGGGGCTACATATAT 59.992 52.381 9.45 0.00 41.46 0.86
1451 3191 0.412244 AGGGCTCGGGGCTACATATA 59.588 55.000 9.45 0.00 41.46 0.86
1452 3192 1.158705 AGGGCTCGGGGCTACATAT 59.841 57.895 9.45 0.00 41.46 1.78
1453 3193 1.837051 CAGGGCTCGGGGCTACATA 60.837 63.158 9.45 0.00 41.46 2.29
1454 3194 3.164269 CAGGGCTCGGGGCTACAT 61.164 66.667 9.45 0.00 41.46 2.29
1455 3195 4.392166 TCAGGGCTCGGGGCTACA 62.392 66.667 9.45 0.00 41.46 2.74
1456 3196 3.851128 GTCAGGGCTCGGGGCTAC 61.851 72.222 9.45 0.88 41.46 3.58
1460 3200 4.181010 CATGGTCAGGGCTCGGGG 62.181 72.222 0.00 0.00 0.00 5.73
1463 3203 0.249784 CTCATCATGGTCAGGGCTCG 60.250 60.000 0.00 0.00 0.00 5.03
1923 3663 5.168569 CGATGTCCTAAACAGTGAGCTTAA 58.831 41.667 0.00 0.00 42.37 1.85
1924 3664 4.744570 CGATGTCCTAAACAGTGAGCTTA 58.255 43.478 0.00 0.00 42.37 3.09
1925 3665 3.589988 CGATGTCCTAAACAGTGAGCTT 58.410 45.455 0.00 0.00 42.37 3.74
1926 3666 2.675317 GCGATGTCCTAAACAGTGAGCT 60.675 50.000 0.00 0.00 42.37 4.09
2007 3753 4.425577 AGTGTCAAATCCGAAAGCAATC 57.574 40.909 0.00 0.00 0.00 2.67
2035 3935 7.486551 TCGGCGTCCAAAAATTATCAAATTAAG 59.513 33.333 6.85 0.00 34.12 1.85
2043 3943 6.577427 GTCAATATCGGCGTCCAAAAATTATC 59.423 38.462 6.85 0.00 0.00 1.75
2095 7339 5.012239 TCTTTCCTGATGATGAACCTTTGG 58.988 41.667 0.00 0.00 0.00 3.28
2096 7340 6.579666 TTCTTTCCTGATGATGAACCTTTG 57.420 37.500 0.00 0.00 0.00 2.77
2109 7353 3.883489 TCGATCGATAGCTTCTTTCCTGA 59.117 43.478 15.15 0.00 0.00 3.86
2165 7409 3.756933 TGTACCTAAGGCTTCGTGTTT 57.243 42.857 1.30 0.00 0.00 2.83
2166 7410 3.259876 TCATGTACCTAAGGCTTCGTGTT 59.740 43.478 1.30 0.00 0.00 3.32
2340 7655 5.004448 TGACATTTTTCATGCATGCCATTT 58.996 33.333 22.25 3.75 29.71 2.32
2360 7675 6.701400 ACATTGGCAACTTAAGTTTGAATGAC 59.299 34.615 29.34 19.87 35.83 3.06
2367 7708 6.876257 TGAAAACACATTGGCAACTTAAGTTT 59.124 30.769 18.25 7.13 35.83 2.66
2460 7913 5.502153 TGGCAAATTTAAACACACTACGT 57.498 34.783 0.00 0.00 0.00 3.57
2462 7915 6.145371 CACCATGGCAAATTTAAACACACTAC 59.855 38.462 13.04 0.00 0.00 2.73
2585 8039 0.106708 ACTTCATCACTGTGCCACGT 59.893 50.000 2.12 0.00 0.00 4.49
2587 8041 1.160137 GGACTTCATCACTGTGCCAC 58.840 55.000 2.12 0.00 0.00 5.01
2598 8052 2.289945 GCACAAGTGAGGAGGACTTCAT 60.290 50.000 4.04 0.00 34.79 2.57
2644 8098 2.941064 GCTACATTGCAATGCAGAGAGA 59.059 45.455 34.05 14.39 40.61 3.10
2650 8104 0.818938 CCCTGCTACATTGCAATGCA 59.181 50.000 33.94 25.81 42.83 3.96
2657 8111 3.914426 AGTCTTACCCCTGCTACATTG 57.086 47.619 0.00 0.00 0.00 2.82
2659 8113 2.966516 GCTAGTCTTACCCCTGCTACAT 59.033 50.000 0.00 0.00 0.00 2.29
2667 8121 0.178301 GCCAGTGCTAGTCTTACCCC 59.822 60.000 0.00 0.00 33.53 4.95
2680 8134 3.114616 CACGAAGCTCCGCCAGTG 61.115 66.667 0.00 0.00 0.00 3.66
2681 8135 3.288308 CTCACGAAGCTCCGCCAGT 62.288 63.158 0.00 0.00 0.00 4.00
2682 8136 2.507992 CTCACGAAGCTCCGCCAG 60.508 66.667 0.00 0.00 0.00 4.85
2683 8137 4.069232 CCTCACGAAGCTCCGCCA 62.069 66.667 0.00 0.00 0.00 5.69
2684 8138 4.821589 CCCTCACGAAGCTCCGCC 62.822 72.222 0.00 0.00 0.00 6.13
2686 8140 3.589654 TTGCCCTCACGAAGCTCCG 62.590 63.158 0.00 0.00 0.00 4.63
2687 8141 0.889186 TTTTGCCCTCACGAAGCTCC 60.889 55.000 0.00 0.00 0.00 4.70
2688 8142 0.519077 CTTTTGCCCTCACGAAGCTC 59.481 55.000 0.00 0.00 0.00 4.09
2689 8143 1.518903 GCTTTTGCCCTCACGAAGCT 61.519 55.000 0.00 0.00 38.02 3.74
2690 8144 1.081175 GCTTTTGCCCTCACGAAGC 60.081 57.895 0.00 0.00 40.15 3.86
2691 8145 1.207593 CGCTTTTGCCCTCACGAAG 59.792 57.895 0.00 0.00 43.93 3.79
2692 8146 1.525077 ACGCTTTTGCCCTCACGAA 60.525 52.632 0.00 0.00 43.93 3.85
2693 8147 2.110213 ACGCTTTTGCCCTCACGA 59.890 55.556 0.00 0.00 43.93 4.35
2694 8148 2.252260 CACGCTTTTGCCCTCACG 59.748 61.111 0.00 0.00 43.93 4.35
2695 8149 2.050077 GCACGCTTTTGCCCTCAC 60.050 61.111 0.00 0.00 43.93 3.51
2701 8155 3.113979 GCCATGGCACGCTTTTGC 61.114 61.111 32.08 0.00 42.18 3.68
2702 8156 2.432972 GGCCATGGCACGCTTTTG 60.433 61.111 36.56 0.00 44.11 2.44
2703 8157 3.694538 GGGCCATGGCACGCTTTT 61.695 61.111 36.56 0.00 44.11 2.27
2724 8178 0.532862 CGTATTACCTGCTGGGGCTG 60.533 60.000 14.82 0.00 40.03 4.85
2725 8179 0.981277 ACGTATTACCTGCTGGGGCT 60.981 55.000 14.82 0.24 40.03 5.19
2726 8180 0.754472 TACGTATTACCTGCTGGGGC 59.246 55.000 14.82 0.00 40.03 5.80
2727 8181 1.758280 TGTACGTATTACCTGCTGGGG 59.242 52.381 14.82 1.98 40.03 4.96
2728 8182 3.746045 ATGTACGTATTACCTGCTGGG 57.254 47.619 14.82 4.64 41.89 4.45
2729 8183 7.154435 AGTATATGTACGTATTACCTGCTGG 57.846 40.000 12.74 8.29 35.92 4.85
2730 8184 8.944029 AGTAGTATATGTACGTATTACCTGCTG 58.056 37.037 12.74 0.00 35.92 4.41
2731 8185 9.512588 AAGTAGTATATGTACGTATTACCTGCT 57.487 33.333 12.74 11.59 35.92 4.24
2738 8192 8.734386 GGGCTGTAAGTAGTATATGTACGTATT 58.266 37.037 12.74 0.00 34.05 1.89
2739 8193 7.884877 TGGGCTGTAAGTAGTATATGTACGTAT 59.115 37.037 12.18 12.18 34.05 3.06
2740 8194 7.223584 TGGGCTGTAAGTAGTATATGTACGTA 58.776 38.462 0.00 0.00 34.05 3.57
2741 8195 6.064060 TGGGCTGTAAGTAGTATATGTACGT 58.936 40.000 0.00 0.00 34.05 3.57
2742 8196 6.564709 TGGGCTGTAAGTAGTATATGTACG 57.435 41.667 0.00 0.00 34.05 3.67
2743 8197 6.388278 GCTGGGCTGTAAGTAGTATATGTAC 58.612 44.000 0.00 0.00 35.30 2.90
2744 8198 5.479375 GGCTGGGCTGTAAGTAGTATATGTA 59.521 44.000 0.00 0.00 35.30 2.29
2745 8199 4.283722 GGCTGGGCTGTAAGTAGTATATGT 59.716 45.833 0.00 0.00 35.30 2.29
2746 8200 4.322801 GGGCTGGGCTGTAAGTAGTATATG 60.323 50.000 0.00 0.00 35.30 1.78
2747 8201 3.838903 GGGCTGGGCTGTAAGTAGTATAT 59.161 47.826 0.00 0.00 35.30 0.86
2748 8202 3.236896 GGGCTGGGCTGTAAGTAGTATA 58.763 50.000 0.00 0.00 35.30 1.47
2749 8203 2.047830 GGGCTGGGCTGTAAGTAGTAT 58.952 52.381 0.00 0.00 35.30 2.12
2750 8204 1.273381 TGGGCTGGGCTGTAAGTAGTA 60.273 52.381 0.00 0.00 35.30 1.82
2751 8205 0.546747 TGGGCTGGGCTGTAAGTAGT 60.547 55.000 0.00 0.00 35.30 2.73
2752 8206 0.107654 GTGGGCTGGGCTGTAAGTAG 60.108 60.000 0.00 0.00 35.30 2.57
2753 8207 1.895020 CGTGGGCTGGGCTGTAAGTA 61.895 60.000 0.00 0.00 35.30 2.24
2754 8208 2.757077 GTGGGCTGGGCTGTAAGT 59.243 61.111 0.00 0.00 35.30 2.24
2755 8209 2.436646 CGTGGGCTGGGCTGTAAG 60.437 66.667 0.00 0.00 0.00 2.34
2756 8210 2.925706 TCGTGGGCTGGGCTGTAA 60.926 61.111 0.00 0.00 0.00 2.41
2757 8211 3.702048 GTCGTGGGCTGGGCTGTA 61.702 66.667 0.00 0.00 0.00 2.74
2762 8216 4.415150 ATGCAGTCGTGGGCTGGG 62.415 66.667 0.00 0.00 34.73 4.45
2763 8217 2.821366 GATGCAGTCGTGGGCTGG 60.821 66.667 0.00 0.00 34.73 4.85
2764 8218 1.812922 GAGATGCAGTCGTGGGCTG 60.813 63.158 0.00 0.00 37.06 4.85
2765 8219 1.954362 GAGAGATGCAGTCGTGGGCT 61.954 60.000 0.00 0.00 0.00 5.19
2766 8220 1.520342 GAGAGATGCAGTCGTGGGC 60.520 63.158 0.00 0.00 0.00 5.36
2767 8221 1.226802 CGAGAGATGCAGTCGTGGG 60.227 63.158 0.00 0.00 0.00 4.61
2768 8222 1.875813 GCGAGAGATGCAGTCGTGG 60.876 63.158 10.92 0.00 36.09 4.94
2769 8223 0.865218 GAGCGAGAGATGCAGTCGTG 60.865 60.000 10.92 2.11 36.09 4.35
2770 8224 1.431440 GAGCGAGAGATGCAGTCGT 59.569 57.895 10.92 0.94 36.09 4.34
2771 8225 1.653835 CGAGCGAGAGATGCAGTCG 60.654 63.158 0.00 0.00 36.77 4.18
2772 8226 1.943693 GCGAGCGAGAGATGCAGTC 60.944 63.158 0.00 0.00 33.85 3.51
2773 8227 2.103934 GCGAGCGAGAGATGCAGT 59.896 61.111 0.00 0.00 33.85 4.40
2774 8228 1.945169 CTGCGAGCGAGAGATGCAG 60.945 63.158 0.00 0.00 42.02 4.41
2775 8229 2.103736 CTGCGAGCGAGAGATGCA 59.896 61.111 0.00 0.00 33.80 3.96
2776 8230 3.329301 GCTGCGAGCGAGAGATGC 61.329 66.667 0.00 0.00 0.00 3.91
2777 8231 2.103736 TGCTGCGAGCGAGAGATG 59.896 61.111 0.00 0.00 46.26 2.90
2778 8232 2.103934 GTGCTGCGAGCGAGAGAT 59.896 61.111 0.00 0.00 46.26 2.75
2779 8233 4.121669 GGTGCTGCGAGCGAGAGA 62.122 66.667 0.00 0.00 46.26 3.10
2780 8234 4.426112 TGGTGCTGCGAGCGAGAG 62.426 66.667 0.00 0.00 46.26 3.20
2781 8235 4.724602 GTGGTGCTGCGAGCGAGA 62.725 66.667 0.00 0.00 46.26 4.04
2786 8240 4.363990 ACGAGGTGGTGCTGCGAG 62.364 66.667 0.00 0.00 0.00 5.03
2787 8241 4.357947 GACGAGGTGGTGCTGCGA 62.358 66.667 0.00 0.00 0.00 5.10
2788 8242 4.662961 TGACGAGGTGGTGCTGCG 62.663 66.667 0.00 0.00 0.00 5.18
2789 8243 3.044305 GTGACGAGGTGGTGCTGC 61.044 66.667 0.00 0.00 0.00 5.25
2790 8244 2.734723 CGTGACGAGGTGGTGCTG 60.735 66.667 0.00 0.00 0.00 4.41
2791 8245 4.664677 GCGTGACGAGGTGGTGCT 62.665 66.667 10.10 0.00 0.00 4.40
2792 8246 4.664677 AGCGTGACGAGGTGGTGC 62.665 66.667 10.10 0.00 0.00 5.01
2793 8247 2.022129 GAAGCGTGACGAGGTGGTG 61.022 63.158 10.10 0.00 0.00 4.17
2794 8248 2.143594 GAGAAGCGTGACGAGGTGGT 62.144 60.000 10.10 0.00 0.00 4.16
2795 8249 1.444553 GAGAAGCGTGACGAGGTGG 60.445 63.158 10.10 0.00 0.00 4.61
2796 8250 0.455295 GAGAGAAGCGTGACGAGGTG 60.455 60.000 10.10 0.00 0.00 4.00
2797 8251 1.587933 GGAGAGAAGCGTGACGAGGT 61.588 60.000 10.10 0.00 0.00 3.85
2798 8252 1.137825 GGAGAGAAGCGTGACGAGG 59.862 63.158 10.10 0.00 0.00 4.63
2799 8253 0.523966 AAGGAGAGAAGCGTGACGAG 59.476 55.000 10.10 0.00 0.00 4.18
2800 8254 0.522180 GAAGGAGAGAAGCGTGACGA 59.478 55.000 10.10 0.00 0.00 4.20
2801 8255 0.794981 CGAAGGAGAGAAGCGTGACG 60.795 60.000 0.00 0.00 0.00 4.35
2802 8256 1.073768 GCGAAGGAGAGAAGCGTGAC 61.074 60.000 0.00 0.00 0.00 3.67
2803 8257 1.213013 GCGAAGGAGAGAAGCGTGA 59.787 57.895 0.00 0.00 0.00 4.35
2804 8258 0.459237 ATGCGAAGGAGAGAAGCGTG 60.459 55.000 0.00 0.00 0.00 5.34
2805 8259 0.459237 CATGCGAAGGAGAGAAGCGT 60.459 55.000 0.00 0.00 0.00 5.07
2806 8260 1.760268 GCATGCGAAGGAGAGAAGCG 61.760 60.000 0.00 0.00 0.00 4.68
2807 8261 0.742281 TGCATGCGAAGGAGAGAAGC 60.742 55.000 14.09 0.00 0.00 3.86
2808 8262 1.288350 CTGCATGCGAAGGAGAGAAG 58.712 55.000 14.09 0.00 0.00 2.85
2809 8263 0.742281 GCTGCATGCGAAGGAGAGAA 60.742 55.000 14.09 0.00 0.00 2.87
2810 8264 1.153489 GCTGCATGCGAAGGAGAGA 60.153 57.895 14.09 0.00 0.00 3.10
2811 8265 2.178890 GGCTGCATGCGAAGGAGAG 61.179 63.158 14.09 3.76 44.05 3.20
2812 8266 2.124983 GGCTGCATGCGAAGGAGA 60.125 61.111 14.09 0.00 44.05 3.71
2813 8267 2.437180 TGGCTGCATGCGAAGGAG 60.437 61.111 14.09 5.34 44.05 3.69
2814 8268 2.747460 GTGGCTGCATGCGAAGGA 60.747 61.111 14.09 0.00 44.05 3.36
2815 8269 4.170062 CGTGGCTGCATGCGAAGG 62.170 66.667 14.09 4.37 44.05 3.46
2816 8270 2.370824 GATCGTGGCTGCATGCGAAG 62.371 60.000 14.09 6.96 44.05 3.79
2817 8271 2.436469 ATCGTGGCTGCATGCGAA 60.436 55.556 14.09 0.00 44.05 4.70
2818 8272 2.891936 GATCGTGGCTGCATGCGA 60.892 61.111 14.09 12.97 44.05 5.10
2819 8273 4.289379 CGATCGTGGCTGCATGCG 62.289 66.667 14.09 9.16 44.05 4.73
2820 8274 4.602696 GCGATCGTGGCTGCATGC 62.603 66.667 17.81 11.82 41.94 4.06
2821 8275 2.879070 GAGCGATCGTGGCTGCATG 61.879 63.158 17.81 0.00 41.72 4.06
2822 8276 1.738346 TAGAGCGATCGTGGCTGCAT 61.738 55.000 17.81 0.00 41.72 3.96
2823 8277 1.738346 ATAGAGCGATCGTGGCTGCA 61.738 55.000 17.81 0.00 41.72 4.41
2824 8278 1.006805 ATAGAGCGATCGTGGCTGC 60.007 57.895 17.81 0.00 41.72 5.25
2825 8279 1.280886 GCATAGAGCGATCGTGGCTG 61.281 60.000 17.81 9.34 41.72 4.85
2826 8280 1.006805 GCATAGAGCGATCGTGGCT 60.007 57.895 17.81 13.44 45.00 4.75
2827 8281 3.543548 GCATAGAGCGATCGTGGC 58.456 61.111 17.81 6.44 0.00 5.01
2850 8304 1.428869 AAGATGAGGAATCGAGGGGG 58.571 55.000 0.00 0.00 40.54 5.40
2851 8305 4.772624 TGTATAAGATGAGGAATCGAGGGG 59.227 45.833 0.00 0.00 40.54 4.79
2852 8306 5.623368 GCTGTATAAGATGAGGAATCGAGGG 60.623 48.000 0.00 0.00 40.54 4.30
2853 8307 5.047731 TGCTGTATAAGATGAGGAATCGAGG 60.048 44.000 0.00 0.00 40.54 4.63
2854 8308 6.018589 TGCTGTATAAGATGAGGAATCGAG 57.981 41.667 0.00 0.00 40.54 4.04
2855 8309 5.770162 TCTGCTGTATAAGATGAGGAATCGA 59.230 40.000 0.00 0.00 40.54 3.59
2856 8310 6.018589 TCTGCTGTATAAGATGAGGAATCG 57.981 41.667 0.00 0.00 40.54 3.34
2857 8311 6.867816 CACTCTGCTGTATAAGATGAGGAATC 59.132 42.308 0.00 0.00 33.62 2.52
2858 8312 6.740960 GCACTCTGCTGTATAAGATGAGGAAT 60.741 42.308 0.00 0.00 40.96 3.01
2859 8313 5.452496 GCACTCTGCTGTATAAGATGAGGAA 60.452 44.000 0.00 0.00 40.96 3.36
2860 8314 4.038522 GCACTCTGCTGTATAAGATGAGGA 59.961 45.833 0.00 0.00 40.96 3.71
2861 8315 4.202192 TGCACTCTGCTGTATAAGATGAGG 60.202 45.833 0.00 0.00 45.31 3.86
2862 8316 4.941657 TGCACTCTGCTGTATAAGATGAG 58.058 43.478 0.00 0.00 45.31 2.90
2863 8317 4.646492 TCTGCACTCTGCTGTATAAGATGA 59.354 41.667 0.00 0.00 45.31 2.92
2864 8318 4.941657 TCTGCACTCTGCTGTATAAGATG 58.058 43.478 0.00 0.00 45.31 2.90
2865 8319 4.648762 ACTCTGCACTCTGCTGTATAAGAT 59.351 41.667 0.00 0.00 45.31 2.40
2866 8320 4.019858 ACTCTGCACTCTGCTGTATAAGA 58.980 43.478 0.00 0.00 45.31 2.10
2867 8321 4.383850 ACTCTGCACTCTGCTGTATAAG 57.616 45.455 0.00 0.00 45.31 1.73
2868 8322 4.202060 GCTACTCTGCACTCTGCTGTATAA 60.202 45.833 0.00 0.00 45.31 0.98
2869 8323 3.316588 GCTACTCTGCACTCTGCTGTATA 59.683 47.826 0.00 0.00 45.31 1.47
2870 8324 2.100584 GCTACTCTGCACTCTGCTGTAT 59.899 50.000 0.00 0.00 45.31 2.29
2871 8325 1.474478 GCTACTCTGCACTCTGCTGTA 59.526 52.381 0.00 0.00 45.31 2.74
2872 8326 0.246086 GCTACTCTGCACTCTGCTGT 59.754 55.000 0.00 0.00 45.31 4.40
2873 8327 0.531657 AGCTACTCTGCACTCTGCTG 59.468 55.000 0.00 0.00 45.31 4.41
2874 8328 0.531657 CAGCTACTCTGCACTCTGCT 59.468 55.000 0.00 0.00 45.31 4.24
2875 8329 0.529833 TCAGCTACTCTGCACTCTGC 59.470 55.000 0.00 0.00 45.29 4.26
2876 8330 1.818060 AGTCAGCTACTCTGCACTCTG 59.182 52.381 0.00 0.00 42.56 3.35
2877 8331 1.818060 CAGTCAGCTACTCTGCACTCT 59.182 52.381 0.00 0.00 42.56 3.24
2878 8332 1.815613 TCAGTCAGCTACTCTGCACTC 59.184 52.381 6.98 0.00 42.56 3.51
2879 8333 1.916506 TCAGTCAGCTACTCTGCACT 58.083 50.000 6.98 0.00 42.56 4.40
2880 8334 2.957491 ATCAGTCAGCTACTCTGCAC 57.043 50.000 6.98 0.00 42.56 4.57
2881 8335 3.625853 AGTATCAGTCAGCTACTCTGCA 58.374 45.455 6.98 0.00 42.56 4.41
2882 8336 4.819630 ACTAGTATCAGTCAGCTACTCTGC 59.180 45.833 0.00 0.00 42.56 4.26
2883 8337 5.277779 GCACTAGTATCAGTCAGCTACTCTG 60.278 48.000 0.00 0.00 44.21 3.35
2884 8338 4.819630 GCACTAGTATCAGTCAGCTACTCT 59.180 45.833 0.00 0.00 35.76 3.24
2885 8339 4.576873 TGCACTAGTATCAGTCAGCTACTC 59.423 45.833 0.00 0.00 35.76 2.59
2886 8340 4.527944 TGCACTAGTATCAGTCAGCTACT 58.472 43.478 0.00 0.00 39.81 2.57
2887 8341 4.902443 TGCACTAGTATCAGTCAGCTAC 57.098 45.455 0.00 0.00 0.00 3.58
2888 8342 4.279420 CCATGCACTAGTATCAGTCAGCTA 59.721 45.833 0.00 0.00 0.00 3.32
2889 8343 3.069300 CCATGCACTAGTATCAGTCAGCT 59.931 47.826 0.00 0.00 0.00 4.24
2890 8344 3.388308 CCATGCACTAGTATCAGTCAGC 58.612 50.000 0.00 0.00 0.00 4.26
2891 8345 3.386078 ACCCATGCACTAGTATCAGTCAG 59.614 47.826 0.00 0.00 0.00 3.51
2892 8346 3.374764 ACCCATGCACTAGTATCAGTCA 58.625 45.455 0.00 0.00 0.00 3.41
2893 8347 3.384789 TGACCCATGCACTAGTATCAGTC 59.615 47.826 0.00 2.28 0.00 3.51
2894 8348 3.133003 GTGACCCATGCACTAGTATCAGT 59.867 47.826 0.00 0.00 33.57 3.41
2895 8349 3.722147 GTGACCCATGCACTAGTATCAG 58.278 50.000 0.00 0.00 33.57 2.90
2896 8350 2.100749 CGTGACCCATGCACTAGTATCA 59.899 50.000 0.00 0.00 34.18 2.15
2897 8351 2.743938 CGTGACCCATGCACTAGTATC 58.256 52.381 0.00 0.00 34.18 2.24
2898 8352 1.202533 GCGTGACCCATGCACTAGTAT 60.203 52.381 0.00 0.00 44.78 2.12
2899 8353 0.174845 GCGTGACCCATGCACTAGTA 59.825 55.000 0.00 0.00 44.78 1.82
2900 8354 1.079127 GCGTGACCCATGCACTAGT 60.079 57.895 6.30 0.00 44.78 2.57
2901 8355 2.167219 CGCGTGACCCATGCACTAG 61.167 63.158 11.13 0.00 45.59 2.57
2902 8356 2.125713 CGCGTGACCCATGCACTA 60.126 61.111 11.13 0.00 45.59 2.74
2903 8357 4.314440 ACGCGTGACCCATGCACT 62.314 61.111 12.93 0.00 45.59 4.40
2904 8358 4.088762 CACGCGTGACCCATGCAC 62.089 66.667 34.93 0.00 45.59 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.