Multiple sequence alignment - TraesCS6A01G215900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G215900 chr6A 100.000 5520 0 0 2522 8041 397533783 397528264 0.000000e+00 10194.0
1 TraesCS6A01G215900 chr6A 100.000 2144 0 0 1 2144 397536304 397534161 0.000000e+00 3960.0
2 TraesCS6A01G215900 chr6A 82.474 97 13 4 359 454 109387164 109387071 1.860000e-11 82.4
3 TraesCS6A01G215900 chr6D 96.295 4103 89 29 2522 6586 277643092 277647169 0.000000e+00 6676.0
4 TraesCS6A01G215900 chr6D 91.606 1644 85 30 525 2142 277641462 277643078 0.000000e+00 2222.0
5 TraesCS6A01G215900 chr6D 92.879 660 35 8 7232 7887 277649048 277649699 0.000000e+00 948.0
6 TraesCS6A01G215900 chr6D 90.887 417 18 9 6777 7186 277648659 277649062 7.100000e-150 542.0
7 TraesCS6A01G215900 chr6D 92.746 193 13 1 6585 6776 277647212 277647404 2.210000e-70 278.0
8 TraesCS6A01G215900 chr6D 87.805 164 18 1 358 519 277640716 277640879 2.960000e-44 191.0
9 TraesCS6A01G215900 chr6D 95.000 40 1 1 7195 7233 424177491 424177530 2.420000e-05 62.1
10 TraesCS6A01G215900 chr6B 94.524 3817 122 24 2554 6313 439350236 439354022 0.000000e+00 5810.0
11 TraesCS6A01G215900 chr6B 94.768 1357 48 13 793 2144 439348646 439349984 0.000000e+00 2091.0
12 TraesCS6A01G215900 chr6B 88.128 716 74 6 9 714 439347930 439348644 0.000000e+00 841.0
13 TraesCS6A01G215900 chr6B 90.774 607 32 8 6585 7186 439356598 439357185 0.000000e+00 789.0
14 TraesCS6A01G215900 chr6B 91.756 279 11 3 6309 6586 439356288 439356555 2.120000e-100 377.0
15 TraesCS6A01G215900 chr6B 79.783 460 47 21 7298 7748 439378308 439378730 7.890000e-75 292.0
16 TraesCS6A01G215900 chr6B 92.857 70 5 0 7232 7301 439357171 439357240 1.430000e-17 102.0
17 TraesCS6A01G215900 chr6B 71.253 407 88 22 49 448 52355577 52355961 8.650000e-10 76.8
18 TraesCS6A01G215900 chr3A 85.656 976 84 23 3797 4762 525637942 525638871 0.000000e+00 976.0
19 TraesCS6A01G215900 chr3D 87.864 618 60 13 3797 4406 403700743 403701353 0.000000e+00 712.0
20 TraesCS6A01G215900 chr3D 89.073 302 22 8 4461 4759 403701542 403701835 1.650000e-96 364.0
21 TraesCS6A01G215900 chr3D 94.118 119 7 0 3302 3420 403699261 403699379 1.780000e-41 182.0
22 TraesCS6A01G215900 chr3D 95.122 41 0 2 7195 7235 381006863 381006825 6.740000e-06 63.9
23 TraesCS6A01G215900 chr3D 90.698 43 1 3 1822 1864 23088726 23088687 4.000000e-03 54.7
24 TraesCS6A01G215900 chr3B 88.579 394 25 9 4447 4838 529803743 529804118 2.040000e-125 460.0
25 TraesCS6A01G215900 chr3B 90.299 268 22 2 4916 5179 529804130 529804397 1.660000e-91 348.0
26 TraesCS6A01G215900 chr3B 93.023 172 12 0 3747 3918 529803326 529803497 1.340000e-62 252.0
27 TraesCS6A01G215900 chr1B 78.324 346 45 18 7424 7750 58329253 58328919 6.370000e-46 196.0
28 TraesCS6A01G215900 chr2D 74.876 402 82 17 55 448 181235261 181235651 1.800000e-36 165.0
29 TraesCS6A01G215900 chr2D 93.333 45 2 1 7195 7238 403383380 403383424 1.870000e-06 65.8
30 TraesCS6A01G215900 chr7D 88.696 115 10 3 337 448 9217375 9217261 3.910000e-28 137.0
31 TraesCS6A01G215900 chr4B 80.519 154 22 8 306 454 69314153 69314003 2.370000e-20 111.0
32 TraesCS6A01G215900 chr4D 79.085 153 26 5 306 454 47495365 47495215 5.130000e-17 100.0
33 TraesCS6A01G215900 chr5B 84.615 104 11 5 7433 7534 617256987 617256887 1.850000e-16 99.0
34 TraesCS6A01G215900 chr5B 97.436 39 0 1 7195 7233 396634755 396634718 1.870000e-06 65.8
35 TraesCS6A01G215900 chr5B 97.368 38 1 0 7195 7232 541942189 541942152 1.870000e-06 65.8
36 TraesCS6A01G215900 chr2B 91.379 58 5 0 401 458 272427540 272427483 6.690000e-11 80.5
37 TraesCS6A01G215900 chr2B 90.000 50 1 2 7187 7233 44285355 44285307 2.420000e-05 62.1
38 TraesCS6A01G215900 chr2B 100.000 28 0 0 1822 1849 677511385 677511358 1.500000e-02 52.8
39 TraesCS6A01G215900 chr2B 100.000 28 0 0 1822 1849 770660240 770660213 1.500000e-02 52.8
40 TraesCS6A01G215900 chr1A 81.818 99 10 8 354 447 581824937 581824842 8.650000e-10 76.8
41 TraesCS6A01G215900 chr5A 97.368 38 1 0 7195 7232 680902728 680902765 1.870000e-06 65.8
42 TraesCS6A01G215900 chr1D 97.368 38 1 0 7195 7232 409013079 409013042 1.870000e-06 65.8
43 TraesCS6A01G215900 chr5D 76.129 155 18 13 300 448 481940731 481940872 6.740000e-06 63.9
44 TraesCS6A01G215900 chr7A 93.023 43 1 2 7195 7235 490123897 490123855 2.420000e-05 62.1
45 TraesCS6A01G215900 chr2A 82.353 68 12 0 511 578 53613995 53614062 8.710000e-05 60.2
46 TraesCS6A01G215900 chr2A 100.000 28 0 0 1822 1849 753520760 753520733 1.500000e-02 52.8
47 TraesCS6A01G215900 chr7B 90.476 42 1 3 1822 1863 371219821 371219783 1.500000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G215900 chr6A 397528264 397536304 8040 True 7077.000000 10194 100.000000 1 8041 2 chr6A.!!$R2 8040
1 TraesCS6A01G215900 chr6D 277640716 277649699 8983 False 1809.500000 6676 92.036333 358 7887 6 chr6D.!!$F2 7529
2 TraesCS6A01G215900 chr6B 439347930 439357240 9310 False 1668.333333 5810 92.134500 9 7301 6 chr6B.!!$F3 7292
3 TraesCS6A01G215900 chr3A 525637942 525638871 929 False 976.000000 976 85.656000 3797 4762 1 chr3A.!!$F1 965
4 TraesCS6A01G215900 chr3D 403699261 403701835 2574 False 419.333333 712 90.351667 3302 4759 3 chr3D.!!$F1 1457
5 TraesCS6A01G215900 chr3B 529803326 529804397 1071 False 353.333333 460 90.633667 3747 5179 3 chr3B.!!$F1 1432

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
257 259 0.107456 ATGAGCCGCATTAGTCCCTG 59.893 55.000 0.00 0.00 31.73 4.45 F
870 1467 0.243907 ACGACACGACATTCCCTCTG 59.756 55.000 0.00 0.00 0.00 3.35 F
1195 1800 0.108186 ATTTCGCCGCATCTGAGTGA 60.108 50.000 0.00 0.00 0.00 3.41 F
1933 2549 0.304705 CGTGTGACAGCCAAACAGAC 59.695 55.000 0.00 0.00 32.36 3.51 F
2135 2754 5.296151 ACTACCACATGGATATCAGGTTG 57.704 43.478 4.53 7.51 38.45 3.77 F
3157 3999 5.895636 TGTCCATAAATCATTTTCTGCGT 57.104 34.783 0.00 0.00 0.00 5.24 F
4010 5880 0.393077 CGAATAAGATCGGGGCCACT 59.607 55.000 1.96 0.00 39.12 4.00 F
4655 6714 3.030291 ACTGAACAAATTGCTGGTTCCA 58.970 40.909 0.00 0.00 40.04 3.53 F
5547 7615 1.466856 CATGCAAGGCAGGTACACAT 58.533 50.000 0.00 0.00 43.65 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1113 1718 0.535335 TCTGACGCATCCAGGTTACC 59.465 55.000 0.00 0.00 32.73 2.85 R
1993 2609 3.243805 CCACATGTTGTTCATTTGCCTCA 60.244 43.478 0.00 0.00 34.12 3.86 R
2597 3418 7.655521 AACTGCATACTACCAGTAGATAACA 57.344 36.000 11.71 4.14 41.16 2.41 R
3324 4171 0.179018 GCCCGTCCAGCTCCAATATT 60.179 55.000 0.00 0.00 0.00 1.28 R
3705 5490 0.618458 TATTGGGCGGTCAAGCTCTT 59.382 50.000 0.00 0.00 38.71 2.85 R
4529 6561 3.535561 AGCCTCACACTGGATATTTTCG 58.464 45.455 0.00 0.00 0.00 3.46 R
5122 7190 4.200874 TCATGTTTTGTCGGGTTTACAGT 58.799 39.130 0.00 0.00 0.00 3.55 R
6483 10824 4.018506 TCTCTGAGCCCACATAAAATTCCA 60.019 41.667 0.00 0.00 0.00 3.53 R
7124 12769 0.034337 GGTTCACGCTGTTCAGGGTA 59.966 55.000 19.12 5.52 33.53 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.806608 TACGGTTCTTGTGTGGACTC 57.193 50.000 0.00 0.00 0.00 3.36
41 42 2.313317 ACGGTTCTTGTGTGGACTCTA 58.687 47.619 0.00 0.00 0.00 2.43
69 70 8.988934 GGTCGATTCATAATAAGCTTGTGATTA 58.011 33.333 9.86 5.92 0.00 1.75
91 92 1.371558 GTGCCCCTCTTCGTCAACT 59.628 57.895 0.00 0.00 0.00 3.16
116 117 6.037500 TGACTGATGCTATCTACAAAATGTGC 59.962 38.462 0.00 0.00 0.00 4.57
171 173 2.341543 CGGAGAGGGATGCCATCG 59.658 66.667 5.86 0.00 39.53 3.84
172 174 2.746359 GGAGAGGGATGCCATCGG 59.254 66.667 5.86 0.00 39.53 4.18
191 193 2.479275 CGGCATATTCACTGCAGATCTG 59.521 50.000 23.35 18.84 41.47 2.90
217 219 1.452145 TTGGCTCTTCGTTTGGCACC 61.452 55.000 0.00 0.00 36.02 5.01
219 221 2.556287 CTCTTCGTTTGGCACCGC 59.444 61.111 1.12 0.00 0.00 5.68
238 240 2.942796 CGCTACCAGCACCACCTCA 61.943 63.158 0.00 0.00 42.58 3.86
246 248 2.821366 CACCACCTCATGAGCCGC 60.821 66.667 17.76 0.00 0.00 6.53
257 259 0.107456 ATGAGCCGCATTAGTCCCTG 59.893 55.000 0.00 0.00 31.73 4.45
293 295 1.925946 GCGGCCGCTGCTTATTTATTG 60.926 52.381 41.71 0.00 38.26 1.90
303 305 7.218204 CCGCTGCTTATTTATTGTGTACTTTTC 59.782 37.037 0.00 0.00 0.00 2.29
317 319 3.801114 ACTTTTCAGGGCTTGTTGAAC 57.199 42.857 0.00 0.00 33.36 3.18
326 328 0.312102 GCTTGTTGAACTGTGCCCTC 59.688 55.000 0.00 0.00 0.00 4.30
327 329 0.588252 CTTGTTGAACTGTGCCCTCG 59.412 55.000 0.00 0.00 0.00 4.63
350 352 5.448632 CGGCAAAACCCTTTCATACTATGTC 60.449 44.000 0.00 0.00 33.26 3.06
351 353 5.163550 GGCAAAACCCTTTCATACTATGTCC 60.164 44.000 0.00 0.00 0.00 4.02
396 400 6.430000 GTGGTGTGGTGTTTCTATATGAACTT 59.570 38.462 0.00 0.00 33.88 2.66
466 470 2.994186 TTAGTAAGAATCCACCCGCC 57.006 50.000 0.00 0.00 0.00 6.13
477 481 1.221840 CACCCGCCACATAGAGCTT 59.778 57.895 0.00 0.00 0.00 3.74
492 503 3.425659 AGAGCTTGGAGGGAAAAATGAC 58.574 45.455 0.00 0.00 0.00 3.06
507 518 1.878953 ATGACGACTTTGGTTTCGCT 58.121 45.000 0.00 0.00 38.88 4.93
509 520 1.214367 GACGACTTTGGTTTCGCTCA 58.786 50.000 0.00 0.00 38.88 4.26
515 526 3.214328 ACTTTGGTTTCGCTCATGAGTT 58.786 40.909 23.38 0.00 0.00 3.01
531 1119 7.505923 GCTCATGAGTTAAAGGGGGTTAAATAT 59.494 37.037 23.38 0.00 0.00 1.28
588 1176 2.223294 CCACCGCTTTTACGAAAACACA 60.223 45.455 0.00 0.00 34.06 3.72
597 1185 0.722848 ACGAAAACACACGCGAGTTT 59.277 45.000 15.93 17.41 46.40 2.66
650 1238 1.833787 GCGTTTCCCTCCCCTACACA 61.834 60.000 0.00 0.00 0.00 3.72
684 1272 1.902508 TGAGAGGAAACGGCTGATTCT 59.097 47.619 14.42 0.00 0.00 2.40
685 1273 3.096852 TGAGAGGAAACGGCTGATTCTA 58.903 45.455 14.42 0.00 0.00 2.10
686 1274 3.119101 TGAGAGGAAACGGCTGATTCTAC 60.119 47.826 14.42 9.19 0.00 2.59
707 1295 0.460459 GTTCCTCCTAACGAGCCTGC 60.460 60.000 0.00 0.00 37.27 4.85
725 1313 3.441572 CCTGCTTGGGAGATGTTGTAAAG 59.558 47.826 0.00 0.00 0.00 1.85
729 1317 4.082733 GCTTGGGAGATGTTGTAAAGGTTC 60.083 45.833 0.00 0.00 0.00 3.62
750 1338 8.636213 AGGTTCATATCAGCCTAAATTTCAATG 58.364 33.333 0.00 0.00 0.00 2.82
760 1349 6.935771 AGCCTAAATTTCAATGCAATTCAACA 59.064 30.769 0.00 0.00 31.22 3.33
768 1357 5.181009 TCAATGCAATTCAACAACCAAACA 58.819 33.333 0.00 0.00 31.22 2.83
870 1467 0.243907 ACGACACGACATTCCCTCTG 59.756 55.000 0.00 0.00 0.00 3.35
881 1478 3.341629 CCCTCTGTGCCCCACCAT 61.342 66.667 0.00 0.00 32.73 3.55
1059 1664 1.817099 GCGTGGCCATCTCCTCTTG 60.817 63.158 9.72 0.00 0.00 3.02
1113 1718 4.271816 CGGCTCCCATCTCGTCCG 62.272 72.222 0.00 0.00 0.00 4.79
1171 1776 3.303263 GGCGTTTCTTGCGTGTTTTACTA 60.303 43.478 0.00 0.00 0.00 1.82
1173 1778 4.907582 GCGTTTCTTGCGTGTTTTACTAAT 59.092 37.500 0.00 0.00 0.00 1.73
1195 1800 0.108186 ATTTCGCCGCATCTGAGTGA 60.108 50.000 0.00 0.00 0.00 3.41
1201 1806 0.459237 CCGCATCTGAGTGACACTCC 60.459 60.000 28.47 14.24 44.44 3.85
1214 1819 1.005037 CACTCCCGCACAACTAGCA 60.005 57.895 0.00 0.00 0.00 3.49
1272 1877 4.819088 GTCCCAAATATTTCCAGAGCTCTC 59.181 45.833 14.96 0.00 0.00 3.20
1300 1905 1.877443 CGCCCCCTTCGGTTATTATTG 59.123 52.381 0.00 0.00 0.00 1.90
1391 1996 3.199727 GGCTTCAAATCTCTCTTCCTCCT 59.800 47.826 0.00 0.00 0.00 3.69
1424 2029 7.549488 CGAAAAACAGTAGGGAAATACATCTCT 59.451 37.037 0.00 0.00 33.75 3.10
1425 2030 8.794335 AAAAACAGTAGGGAAATACATCTCTC 57.206 34.615 0.00 0.00 31.08 3.20
1426 2031 5.776173 ACAGTAGGGAAATACATCTCTCG 57.224 43.478 0.00 0.00 31.08 4.04
1427 2032 4.585162 ACAGTAGGGAAATACATCTCTCGG 59.415 45.833 0.00 0.00 31.08 4.63
1500 2105 4.514816 CCAATTCCGGCTCAAAAACAAAAT 59.485 37.500 0.00 0.00 0.00 1.82
1501 2106 5.008514 CCAATTCCGGCTCAAAAACAAAATT 59.991 36.000 0.00 0.00 0.00 1.82
1504 2109 2.547634 CCGGCTCAAAAACAAAATTGGG 59.452 45.455 0.00 0.00 0.00 4.12
1531 2136 8.688747 AAAAGCAGATCCTAAATGATCCTAAG 57.311 34.615 0.00 0.00 41.73 2.18
1532 2137 5.803552 AGCAGATCCTAAATGATCCTAAGC 58.196 41.667 0.00 0.00 41.73 3.09
1533 2138 4.940654 GCAGATCCTAAATGATCCTAAGCC 59.059 45.833 0.00 0.00 41.73 4.35
1690 2295 8.883731 AGATTTCACCTCTGTTTATTTATGTCG 58.116 33.333 0.00 0.00 0.00 4.35
1849 2465 8.747471 ACAAGTACTCCCTCTGTAAACTAATAC 58.253 37.037 0.00 0.00 0.00 1.89
1850 2466 8.968969 CAAGTACTCCCTCTGTAAACTAATACT 58.031 37.037 0.00 0.00 0.00 2.12
1917 2533 9.329913 CTCTTTGGACAATACTTTTTAATCGTG 57.670 33.333 0.00 0.00 0.00 4.35
1933 2549 0.304705 CGTGTGACAGCCAAACAGAC 59.695 55.000 0.00 0.00 32.36 3.51
1939 2555 5.468746 GTGTGACAGCCAAACAGACTATAAA 59.531 40.000 0.00 0.00 33.11 1.40
2135 2754 5.296151 ACTACCACATGGATATCAGGTTG 57.704 43.478 4.53 7.51 38.45 3.77
3157 3999 5.895636 TGTCCATAAATCATTTTCTGCGT 57.104 34.783 0.00 0.00 0.00 5.24
3324 4171 9.040939 CACATGGATTTATGAGTGTAAATACGA 57.959 33.333 0.00 0.00 37.59 3.43
3433 4280 9.654663 AAATCTGTACTTTTCGCTAGTTAGATT 57.345 29.630 0.00 0.00 38.52 2.40
3439 5224 9.747293 GTACTTTTCGCTAGTTAGATTATCCTT 57.253 33.333 0.00 0.00 0.00 3.36
3544 5329 8.041323 ACGAGATTATTCCATATGTACCATTCC 58.959 37.037 1.24 0.00 0.00 3.01
3638 5423 9.525409 GTAAATAACTTCGCATCCTAGAGTTAA 57.475 33.333 0.00 0.00 0.00 2.01
4010 5880 0.393077 CGAATAAGATCGGGGCCACT 59.607 55.000 1.96 0.00 39.12 4.00
4174 6049 4.918810 AAGTCACTTACCTTGCCAAAAG 57.081 40.909 0.00 0.00 0.00 2.27
4175 6050 4.164843 AGTCACTTACCTTGCCAAAAGA 57.835 40.909 0.00 0.00 0.00 2.52
4654 6713 3.733443 ACTGAACAAATTGCTGGTTCC 57.267 42.857 0.00 0.00 40.04 3.62
4655 6714 3.030291 ACTGAACAAATTGCTGGTTCCA 58.970 40.909 0.00 0.00 40.04 3.53
4786 6848 3.450457 AGGTTTGCACTTGGTGATTTTCA 59.550 39.130 1.57 0.00 35.23 2.69
4930 6992 8.076714 ACAATAGTACATTCAGCATTATGACG 57.923 34.615 0.00 0.00 0.00 4.35
5028 7090 9.727859 TTACAACAATATGTACACTTACATGGT 57.272 29.630 0.00 0.00 46.53 3.55
5547 7615 1.466856 CATGCAAGGCAGGTACACAT 58.533 50.000 0.00 0.00 43.65 3.21
6140 8210 9.601217 GAAGTAAAGGTTAGTGATCATGTACAT 57.399 33.333 1.41 1.41 0.00 2.29
6227 8297 8.809468 TGCTAGATCTGTTTCTAGAAGACTAA 57.191 34.615 5.18 1.59 45.37 2.24
6483 10824 7.660208 TGCGGAATTTAAGAAAAAGAGTAGAGT 59.340 33.333 0.00 0.00 0.00 3.24
6586 10928 3.368531 GCACTCCCTCCGATCCATAATAC 60.369 52.174 0.00 0.00 0.00 1.89
6587 10929 4.090090 CACTCCCTCCGATCCATAATACT 58.910 47.826 0.00 0.00 0.00 2.12
6588 10930 5.262009 CACTCCCTCCGATCCATAATACTA 58.738 45.833 0.00 0.00 0.00 1.82
6617 11004 1.935933 ACGAATATGCAACCCGTCTC 58.064 50.000 0.00 0.00 0.00 3.36
6711 11098 3.003689 ACATTTCTTTGCGTTGAGACCTG 59.996 43.478 0.00 0.00 0.00 4.00
6751 11138 2.018270 CTTCTTCGTTACGCGCGC 59.982 61.111 32.58 23.91 41.07 6.86
6839 12483 0.830648 CAGGGGAAATCTACCTCGCA 59.169 55.000 0.00 0.00 32.37 5.10
6857 12501 2.807967 CGCATTCTTCAACCTTGACTCA 59.192 45.455 0.00 0.00 36.83 3.41
6860 12504 4.997395 GCATTCTTCAACCTTGACTCAGTA 59.003 41.667 0.00 0.00 36.83 2.74
6932 12576 1.123756 GCCTTCGTACGAAAACACTCG 59.876 52.381 28.82 16.27 44.50 4.18
6975 12619 1.134670 GTGGGAGGAATCTTGGTCTCG 60.135 57.143 0.00 0.00 0.00 4.04
7050 12694 3.332919 CTCATGTGTTGAGGACTTGAGG 58.667 50.000 0.00 0.00 46.89 3.86
7062 12706 2.038557 GGACTTGAGGTTTGCCAGACTA 59.961 50.000 0.00 0.00 37.19 2.59
7063 12707 3.330267 GACTTGAGGTTTGCCAGACTAG 58.670 50.000 0.00 0.00 37.19 2.57
7080 12725 4.715297 AGACTAGTCACGGTGGGAATAATT 59.285 41.667 24.44 0.00 0.00 1.40
7093 12738 3.895656 GGGAATAATTTTGGGAGCCTACC 59.104 47.826 0.00 0.00 0.00 3.18
7117 12762 6.072673 CCGCAATCCCATGATATGATATGATG 60.073 42.308 5.09 5.09 0.00 3.07
7118 12763 6.485648 CGCAATCCCATGATATGATATGATGT 59.514 38.462 10.29 0.00 0.00 3.06
7119 12764 7.658575 CGCAATCCCATGATATGATATGATGTA 59.341 37.037 10.29 0.36 0.00 2.29
7122 12767 9.570468 AATCCCATGATATGATATGATGTAAGC 57.430 33.333 10.29 0.00 0.00 3.09
7123 12768 7.512130 TCCCATGATATGATATGATGTAAGCC 58.488 38.462 10.29 0.00 0.00 4.35
7124 12769 7.349065 TCCCATGATATGATATGATGTAAGCCT 59.651 37.037 10.29 0.00 0.00 4.58
7125 12770 8.654094 CCCATGATATGATATGATGTAAGCCTA 58.346 37.037 10.29 0.00 0.00 3.93
7126 12771 9.486497 CCATGATATGATATGATGTAAGCCTAC 57.514 37.037 10.29 0.00 0.00 3.18
7162 12807 6.433093 GTGAACCTTGAACAATATTGGGTAGT 59.567 38.462 19.37 6.38 0.00 2.73
7171 12816 5.562635 ACAATATTGGGTAGTTCGTTTCCA 58.437 37.500 19.37 0.00 0.00 3.53
7172 12817 5.646360 ACAATATTGGGTAGTTCGTTTCCAG 59.354 40.000 19.37 0.00 0.00 3.86
7173 12818 2.554370 TTGGGTAGTTCGTTTCCAGG 57.446 50.000 0.00 0.00 0.00 4.45
7174 12819 1.426751 TGGGTAGTTCGTTTCCAGGT 58.573 50.000 0.00 0.00 0.00 4.00
7175 12820 1.345415 TGGGTAGTTCGTTTCCAGGTC 59.655 52.381 0.00 0.00 0.00 3.85
7176 12821 1.345415 GGGTAGTTCGTTTCCAGGTCA 59.655 52.381 0.00 0.00 0.00 4.02
7177 12822 2.612221 GGGTAGTTCGTTTCCAGGTCAG 60.612 54.545 0.00 0.00 0.00 3.51
7178 12823 2.036862 GGTAGTTCGTTTCCAGGTCAGT 59.963 50.000 0.00 0.00 0.00 3.41
7179 12824 2.240493 AGTTCGTTTCCAGGTCAGTG 57.760 50.000 0.00 0.00 0.00 3.66
7180 12825 0.586802 GTTCGTTTCCAGGTCAGTGC 59.413 55.000 0.00 0.00 0.00 4.40
7181 12826 0.468226 TTCGTTTCCAGGTCAGTGCT 59.532 50.000 0.00 0.00 0.00 4.40
7182 12827 0.468226 TCGTTTCCAGGTCAGTGCTT 59.532 50.000 0.00 0.00 0.00 3.91
7183 12828 0.588252 CGTTTCCAGGTCAGTGCTTG 59.412 55.000 0.00 0.00 0.00 4.01
7184 12829 1.810031 CGTTTCCAGGTCAGTGCTTGA 60.810 52.381 0.00 0.00 0.00 3.02
7185 12830 2.297701 GTTTCCAGGTCAGTGCTTGAA 58.702 47.619 0.00 0.00 37.61 2.69
7186 12831 2.260844 TTCCAGGTCAGTGCTTGAAG 57.739 50.000 0.00 0.00 37.61 3.02
7187 12832 0.250467 TCCAGGTCAGTGCTTGAAGC 60.250 55.000 10.84 10.84 42.82 3.86
7196 12841 2.796651 GCTTGAAGCATCGCCCAG 59.203 61.111 13.09 0.00 41.89 4.45
7197 12842 1.746615 GCTTGAAGCATCGCCCAGA 60.747 57.895 13.09 0.00 41.89 3.86
7198 12843 1.712977 GCTTGAAGCATCGCCCAGAG 61.713 60.000 13.09 0.00 41.89 3.35
7199 12844 1.078214 TTGAAGCATCGCCCAGAGG 60.078 57.895 0.00 0.00 0.00 3.69
7211 12856 2.768344 CAGAGGCCGGGGGTACAT 60.768 66.667 2.18 0.00 0.00 2.29
7212 12857 2.446036 AGAGGCCGGGGGTACATC 60.446 66.667 2.18 0.00 0.00 3.06
7213 12858 3.557290 GAGGCCGGGGGTACATCC 61.557 72.222 2.18 0.00 0.00 3.51
7214 12859 4.103928 AGGCCGGGGGTACATCCT 62.104 66.667 2.18 0.00 36.25 3.24
7215 12860 3.557290 GGCCGGGGGTACATCCTC 61.557 72.222 2.18 0.00 36.25 3.71
7223 12868 3.732048 GGGGTACATCCTCCTTTTCAA 57.268 47.619 0.00 0.00 36.25 2.69
7224 12869 4.042271 GGGGTACATCCTCCTTTTCAAA 57.958 45.455 0.00 0.00 36.25 2.69
7225 12870 4.412843 GGGGTACATCCTCCTTTTCAAAA 58.587 43.478 0.00 0.00 36.25 2.44
7226 12871 4.462834 GGGGTACATCCTCCTTTTCAAAAG 59.537 45.833 2.55 2.55 36.25 2.27
7227 12872 5.321927 GGGTACATCCTCCTTTTCAAAAGA 58.678 41.667 11.73 0.00 36.25 2.52
7228 12873 5.773176 GGGTACATCCTCCTTTTCAAAAGAA 59.227 40.000 11.73 0.00 36.25 2.52
7229 12874 6.266786 GGGTACATCCTCCTTTTCAAAAGAAA 59.733 38.462 11.73 0.00 36.25 2.52
7230 12875 7.201965 GGGTACATCCTCCTTTTCAAAAGAAAA 60.202 37.037 11.73 3.79 36.25 2.29
7397 13042 1.079543 CAACAGAGGAGCCGGACTG 60.080 63.158 5.05 8.51 36.58 3.51
7398 13043 1.534235 AACAGAGGAGCCGGACTGT 60.534 57.895 5.05 9.18 43.92 3.55
7399 13044 1.536943 AACAGAGGAGCCGGACTGTC 61.537 60.000 5.05 0.00 41.73 3.51
7400 13045 1.680651 CAGAGGAGCCGGACTGTCT 60.681 63.158 5.05 3.67 0.00 3.41
7401 13046 1.680651 AGAGGAGCCGGACTGTCTG 60.681 63.158 5.05 9.70 0.00 3.51
7421 13066 1.470632 GGTCTCTTCTGGTGCATCTCG 60.471 57.143 0.00 0.00 0.00 4.04
7499 13144 5.465532 TTGAGTGCCTGCAAATTTTCATA 57.534 34.783 0.00 0.00 0.00 2.15
7519 13164 7.622893 TCATAATGAAAATGACATTCGTGGA 57.377 32.000 0.05 0.00 38.61 4.02
7523 13168 5.356882 TGAAAATGACATTCGTGGAAGTC 57.643 39.130 0.05 0.00 0.00 3.01
7553 13199 8.962884 AAAAATCAGTACTCCAAAATGCTTTT 57.037 26.923 0.00 0.00 0.00 2.27
7576 13222 9.875675 TTTTGTAAATAGCATTTTTGCAACATC 57.124 25.926 0.00 0.00 38.04 3.06
7588 13234 7.945326 TTTTTGCAACATCGATTTTGTTTTC 57.055 28.000 21.80 8.81 35.18 2.29
7595 13242 4.744631 ACATCGATTTTGTTTTCTTGCCAC 59.255 37.500 0.00 0.00 0.00 5.01
7611 13258 2.824936 TGCCACGATTTCCATGAATGTT 59.175 40.909 0.00 0.00 0.00 2.71
7613 13260 4.142491 TGCCACGATTTCCATGAATGTTAC 60.142 41.667 0.00 0.00 0.00 2.50
7724 13372 9.748708 TTCCTTTTGATTTTACTGTTCATCAAG 57.251 29.630 8.21 2.87 37.06 3.02
7737 13386 2.372264 TCATCAAGGGCATTTGAGCTC 58.628 47.619 6.82 6.82 40.16 4.09
7738 13387 1.407979 CATCAAGGGCATTTGAGCTCC 59.592 52.381 12.15 0.00 40.16 4.70
7757 13406 5.010213 AGCTCCGGAGTAGATACAAATTCTC 59.990 44.000 31.43 9.68 0.00 2.87
7759 13408 6.207025 GCTCCGGAGTAGATACAAATTCTCTA 59.793 42.308 31.43 0.00 0.00 2.43
7785 13434 2.024414 GAAGGGACGCATAAAATGGCT 58.976 47.619 0.00 0.00 0.00 4.75
7789 13438 1.742831 GGACGCATAAAATGGCTCACA 59.257 47.619 0.00 0.00 0.00 3.58
7826 13475 6.537301 CACTTCGGTATGCCATTTACTAGAAA 59.463 38.462 0.00 0.00 34.09 2.52
7827 13476 6.761714 ACTTCGGTATGCCATTTACTAGAAAG 59.238 38.462 0.00 0.00 34.09 2.62
7828 13477 5.607477 TCGGTATGCCATTTACTAGAAAGG 58.393 41.667 0.00 0.00 34.09 3.11
7846 13495 0.108567 GGTTGGGCGTGTTTTGTTGT 60.109 50.000 0.00 0.00 0.00 3.32
7898 13547 4.988598 CGTGAGCCCCGCACACTT 62.989 66.667 11.46 0.00 45.24 3.16
7899 13548 3.050275 GTGAGCCCCGCACACTTC 61.050 66.667 6.90 0.00 44.35 3.01
7900 13549 4.680237 TGAGCCCCGCACACTTCG 62.680 66.667 0.00 0.00 0.00 3.79
7909 13558 2.360350 CACACTTCGGCAGCCCAT 60.360 61.111 5.63 0.00 0.00 4.00
7910 13559 1.973281 CACACTTCGGCAGCCCATT 60.973 57.895 5.63 0.00 0.00 3.16
7911 13560 1.228552 ACACTTCGGCAGCCCATTT 60.229 52.632 5.63 0.00 0.00 2.32
7912 13561 0.037590 ACACTTCGGCAGCCCATTTA 59.962 50.000 5.63 0.00 0.00 1.40
7913 13562 0.451783 CACTTCGGCAGCCCATTTAC 59.548 55.000 5.63 0.00 0.00 2.01
7914 13563 0.328258 ACTTCGGCAGCCCATTTACT 59.672 50.000 5.63 0.00 0.00 2.24
7915 13564 1.557832 ACTTCGGCAGCCCATTTACTA 59.442 47.619 5.63 0.00 0.00 1.82
7916 13565 2.213499 CTTCGGCAGCCCATTTACTAG 58.787 52.381 5.63 0.00 0.00 2.57
7917 13566 1.491668 TCGGCAGCCCATTTACTAGA 58.508 50.000 5.63 0.00 0.00 2.43
7918 13567 1.834896 TCGGCAGCCCATTTACTAGAA 59.165 47.619 5.63 0.00 0.00 2.10
7919 13568 2.158957 TCGGCAGCCCATTTACTAGAAG 60.159 50.000 5.63 0.00 0.00 2.85
7920 13569 2.576615 GGCAGCCCATTTACTAGAAGG 58.423 52.381 0.00 0.00 0.00 3.46
7921 13570 2.172717 GGCAGCCCATTTACTAGAAGGA 59.827 50.000 0.00 0.00 0.00 3.36
7922 13571 3.181439 GGCAGCCCATTTACTAGAAGGAT 60.181 47.826 0.00 0.00 0.00 3.24
7923 13572 4.464947 GCAGCCCATTTACTAGAAGGATT 58.535 43.478 0.00 0.00 0.00 3.01
7924 13573 4.276926 GCAGCCCATTTACTAGAAGGATTG 59.723 45.833 0.00 0.00 0.00 2.67
7925 13574 4.823989 CAGCCCATTTACTAGAAGGATTGG 59.176 45.833 0.00 0.00 0.00 3.16
7926 13575 4.726825 AGCCCATTTACTAGAAGGATTGGA 59.273 41.667 0.00 0.00 0.00 3.53
7927 13576 4.822350 GCCCATTTACTAGAAGGATTGGAC 59.178 45.833 0.00 0.00 0.00 4.02
7928 13577 5.057149 CCCATTTACTAGAAGGATTGGACG 58.943 45.833 0.00 0.00 0.00 4.79
7929 13578 5.396436 CCCATTTACTAGAAGGATTGGACGT 60.396 44.000 0.00 0.00 0.00 4.34
7930 13579 5.523916 CCATTTACTAGAAGGATTGGACGTG 59.476 44.000 0.00 0.00 0.00 4.49
7931 13580 5.733620 TTTACTAGAAGGATTGGACGTGT 57.266 39.130 0.00 0.00 0.00 4.49
7932 13581 5.733620 TTACTAGAAGGATTGGACGTGTT 57.266 39.130 0.00 0.00 0.00 3.32
7933 13582 4.618920 ACTAGAAGGATTGGACGTGTTT 57.381 40.909 0.00 0.00 0.00 2.83
7934 13583 4.969484 ACTAGAAGGATTGGACGTGTTTT 58.031 39.130 0.00 0.00 0.00 2.43
7935 13584 4.755123 ACTAGAAGGATTGGACGTGTTTTG 59.245 41.667 0.00 0.00 0.00 2.44
7936 13585 2.293399 AGAAGGATTGGACGTGTTTTGC 59.707 45.455 0.00 0.00 0.00 3.68
7937 13586 1.981256 AGGATTGGACGTGTTTTGCT 58.019 45.000 0.00 0.00 0.00 3.91
7938 13587 1.608590 AGGATTGGACGTGTTTTGCTG 59.391 47.619 0.00 0.00 0.00 4.41
7939 13588 1.606668 GGATTGGACGTGTTTTGCTGA 59.393 47.619 0.00 0.00 0.00 4.26
7940 13589 2.350772 GGATTGGACGTGTTTTGCTGAG 60.351 50.000 0.00 0.00 0.00 3.35
7941 13590 0.380378 TTGGACGTGTTTTGCTGAGC 59.620 50.000 0.00 0.00 0.00 4.26
7942 13591 0.463654 TGGACGTGTTTTGCTGAGCT 60.464 50.000 5.83 0.00 0.00 4.09
7943 13592 1.202592 TGGACGTGTTTTGCTGAGCTA 60.203 47.619 5.83 0.00 0.00 3.32
7944 13593 1.194772 GGACGTGTTTTGCTGAGCTAC 59.805 52.381 5.83 1.95 0.00 3.58
7945 13594 2.135933 GACGTGTTTTGCTGAGCTACT 58.864 47.619 5.83 0.00 0.00 2.57
7946 13595 3.314553 GACGTGTTTTGCTGAGCTACTA 58.685 45.455 5.83 0.00 0.00 1.82
7947 13596 3.926616 ACGTGTTTTGCTGAGCTACTAT 58.073 40.909 5.83 0.00 0.00 2.12
7948 13597 4.315803 ACGTGTTTTGCTGAGCTACTATT 58.684 39.130 5.83 0.00 0.00 1.73
7949 13598 4.152402 ACGTGTTTTGCTGAGCTACTATTG 59.848 41.667 5.83 0.00 0.00 1.90
7950 13599 4.152402 CGTGTTTTGCTGAGCTACTATTGT 59.848 41.667 5.83 0.00 0.00 2.71
7951 13600 5.334105 CGTGTTTTGCTGAGCTACTATTGTT 60.334 40.000 5.83 0.00 0.00 2.83
7952 13601 5.853282 GTGTTTTGCTGAGCTACTATTGTTG 59.147 40.000 5.83 0.00 0.00 3.33
7953 13602 5.530915 TGTTTTGCTGAGCTACTATTGTTGT 59.469 36.000 5.83 0.00 0.00 3.32
7954 13603 6.039270 TGTTTTGCTGAGCTACTATTGTTGTT 59.961 34.615 5.83 0.00 0.00 2.83
7955 13604 5.862924 TTGCTGAGCTACTATTGTTGTTC 57.137 39.130 5.83 0.00 32.11 3.18
7956 13605 4.893608 TGCTGAGCTACTATTGTTGTTCA 58.106 39.130 5.83 7.75 37.00 3.18
7957 13606 5.304778 TGCTGAGCTACTATTGTTGTTCAA 58.695 37.500 5.83 0.00 38.23 2.69
7958 13607 5.762711 TGCTGAGCTACTATTGTTGTTCAAA 59.237 36.000 5.83 0.35 38.23 2.69
7959 13608 6.262049 TGCTGAGCTACTATTGTTGTTCAAAA 59.738 34.615 5.83 0.08 38.23 2.44
7960 13609 7.040478 TGCTGAGCTACTATTGTTGTTCAAAAT 60.040 33.333 5.83 0.00 38.23 1.82
7961 13610 7.809806 GCTGAGCTACTATTGTTGTTCAAAATT 59.190 33.333 0.00 0.00 38.23 1.82
7962 13611 9.683069 CTGAGCTACTATTGTTGTTCAAAATTT 57.317 29.630 8.98 0.00 38.23 1.82
7963 13612 9.677567 TGAGCTACTATTGTTGTTCAAAATTTC 57.322 29.630 5.95 0.00 36.61 2.17
7964 13613 9.899226 GAGCTACTATTGTTGTTCAAAATTTCT 57.101 29.630 0.00 0.00 39.62 2.52
7972 13621 9.840427 ATTGTTGTTCAAAATTTCTAGATACCG 57.160 29.630 0.00 0.00 39.62 4.02
7973 13622 7.302524 TGTTGTTCAAAATTTCTAGATACCGC 58.697 34.615 0.00 0.00 0.00 5.68
7974 13623 7.041030 TGTTGTTCAAAATTTCTAGATACCGCA 60.041 33.333 0.00 0.00 0.00 5.69
7975 13624 7.072177 TGTTCAAAATTTCTAGATACCGCAG 57.928 36.000 0.00 0.00 0.00 5.18
7976 13625 6.653320 TGTTCAAAATTTCTAGATACCGCAGT 59.347 34.615 0.00 0.00 0.00 4.40
7977 13626 7.820386 TGTTCAAAATTTCTAGATACCGCAGTA 59.180 33.333 0.00 0.00 0.00 2.74
7978 13627 8.328864 GTTCAAAATTTCTAGATACCGCAGTAG 58.671 37.037 0.00 0.00 0.00 2.57
7979 13628 7.778083 TCAAAATTTCTAGATACCGCAGTAGA 58.222 34.615 0.00 0.00 0.00 2.59
7980 13629 8.421784 TCAAAATTTCTAGATACCGCAGTAGAT 58.578 33.333 0.00 0.00 0.00 1.98
7981 13630 9.046296 CAAAATTTCTAGATACCGCAGTAGATT 57.954 33.333 0.00 0.00 0.00 2.40
8026 13675 6.834168 TTTTTAGGGGTAAATCTTCAGCAG 57.166 37.500 0.00 0.00 0.00 4.24
8027 13676 4.503714 TTAGGGGTAAATCTTCAGCAGG 57.496 45.455 0.00 0.00 0.00 4.85
8028 13677 2.279173 AGGGGTAAATCTTCAGCAGGT 58.721 47.619 0.00 0.00 0.00 4.00
8029 13678 3.460825 AGGGGTAAATCTTCAGCAGGTA 58.539 45.455 0.00 0.00 0.00 3.08
8030 13679 3.456277 AGGGGTAAATCTTCAGCAGGTAG 59.544 47.826 0.00 0.00 0.00 3.18
8031 13680 3.454812 GGGGTAAATCTTCAGCAGGTAGA 59.545 47.826 0.00 0.00 0.00 2.59
8032 13681 4.103311 GGGGTAAATCTTCAGCAGGTAGAT 59.897 45.833 0.00 0.00 0.00 1.98
8033 13682 5.307196 GGGGTAAATCTTCAGCAGGTAGATA 59.693 44.000 0.00 0.00 0.00 1.98
8034 13683 6.459923 GGGTAAATCTTCAGCAGGTAGATAG 58.540 44.000 0.00 0.00 0.00 2.08
8035 13684 6.267928 GGGTAAATCTTCAGCAGGTAGATAGA 59.732 42.308 0.00 0.00 0.00 1.98
8036 13685 7.038658 GGGTAAATCTTCAGCAGGTAGATAGAT 60.039 40.741 0.00 0.00 0.00 1.98
8037 13686 9.026121 GGTAAATCTTCAGCAGGTAGATAGATA 57.974 37.037 0.00 0.00 0.00 1.98
8040 13689 8.948401 AATCTTCAGCAGGTAGATAGATAAGA 57.052 34.615 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.567579 ATGCCCAACCACGTGGAGG 62.568 63.158 40.21 34.74 41.65 4.30
2 3 0.322098 TAATGCCCAACCACGTGGAG 60.322 55.000 40.21 28.83 41.65 3.86
3 4 0.606944 GTAATGCCCAACCACGTGGA 60.607 55.000 40.21 18.00 41.65 4.02
5 6 1.499949 CGTAATGCCCAACCACGTG 59.500 57.895 9.08 9.08 0.00 4.49
6 7 1.673009 CCGTAATGCCCAACCACGT 60.673 57.895 0.00 0.00 0.00 4.49
7 8 1.238625 AACCGTAATGCCCAACCACG 61.239 55.000 0.00 0.00 0.00 4.94
8 9 0.524414 GAACCGTAATGCCCAACCAC 59.476 55.000 0.00 0.00 0.00 4.16
9 10 0.402504 AGAACCGTAATGCCCAACCA 59.597 50.000 0.00 0.00 0.00 3.67
10 11 1.201414 CAAGAACCGTAATGCCCAACC 59.799 52.381 0.00 0.00 0.00 3.77
11 12 1.883926 ACAAGAACCGTAATGCCCAAC 59.116 47.619 0.00 0.00 0.00 3.77
12 13 1.883275 CACAAGAACCGTAATGCCCAA 59.117 47.619 0.00 0.00 0.00 4.12
39 40 8.438513 CACAAGCTTATTATGAATCGACCATAG 58.561 37.037 0.00 2.61 0.00 2.23
41 42 6.992123 TCACAAGCTTATTATGAATCGACCAT 59.008 34.615 0.00 7.23 0.00 3.55
69 70 1.371558 GACGAAGAGGGGCACACTT 59.628 57.895 0.00 0.00 0.00 3.16
72 73 1.070786 GTTGACGAAGAGGGGCACA 59.929 57.895 0.00 0.00 0.00 4.57
91 92 6.037500 GCACATTTTGTAGATAGCATCAGTCA 59.962 38.462 0.00 0.00 0.00 3.41
116 117 0.104855 TCCATAGCTGCAAGTAGCCG 59.895 55.000 6.53 0.00 44.76 5.52
191 193 3.793144 CGAAGAGCCAACGCCTGC 61.793 66.667 0.00 0.00 34.57 4.85
193 195 1.227853 AAACGAAGAGCCAACGCCT 60.228 52.632 0.00 0.00 34.57 5.52
219 221 3.665675 GAGGTGGTGCTGGTAGCGG 62.666 68.421 0.00 0.00 46.26 5.52
238 240 0.107456 CAGGGACTAATGCGGCTCAT 59.893 55.000 0.00 0.00 36.02 2.90
275 277 2.099098 ACACAATAAATAAGCAGCGGCC 59.901 45.455 4.82 0.00 42.56 6.13
281 283 8.519526 CCCTGAAAAGTACACAATAAATAAGCA 58.480 33.333 0.00 0.00 0.00 3.91
293 295 3.630312 TCAACAAGCCCTGAAAAGTACAC 59.370 43.478 0.00 0.00 0.00 2.90
303 305 0.031178 GCACAGTTCAACAAGCCCTG 59.969 55.000 0.00 0.00 0.00 4.45
326 328 4.398044 ACATAGTATGAAAGGGTTTTGCCG 59.602 41.667 17.13 0.00 38.44 5.69
327 329 5.163550 GGACATAGTATGAAAGGGTTTTGCC 60.164 44.000 17.13 0.00 0.00 4.52
329 331 5.646360 ACGGACATAGTATGAAAGGGTTTTG 59.354 40.000 17.13 0.00 0.00 2.44
350 352 1.668751 ACAACACAAAGTAGCACACGG 59.331 47.619 0.00 0.00 0.00 4.94
351 353 2.095213 ACACAACACAAAGTAGCACACG 59.905 45.455 0.00 0.00 0.00 4.49
396 400 4.301072 AGCAAACCACTAGAGCCAAATA 57.699 40.909 0.00 0.00 0.00 1.40
448 452 1.483415 GTGGCGGGTGGATTCTTACTA 59.517 52.381 0.00 0.00 0.00 1.82
466 470 3.634397 TTTCCCTCCAAGCTCTATGTG 57.366 47.619 0.00 0.00 0.00 3.21
477 481 3.502123 AAGTCGTCATTTTTCCCTCCA 57.498 42.857 0.00 0.00 0.00 3.86
492 503 1.798223 TCATGAGCGAAACCAAAGTCG 59.202 47.619 0.00 0.00 40.24 4.18
507 518 7.782644 CCATATTTAACCCCCTTTAACTCATGA 59.217 37.037 0.00 0.00 0.00 3.07
509 520 7.563556 CACCATATTTAACCCCCTTTAACTCAT 59.436 37.037 0.00 0.00 0.00 2.90
515 526 5.631953 CGGTCACCATATTTAACCCCCTTTA 60.632 44.000 0.00 0.00 0.00 1.85
551 1139 0.323451 GTGGGAGGAATTGGGTCACC 60.323 60.000 0.00 0.00 37.24 4.02
595 1183 1.909459 TAGCAGAGGGATGGCGCAAA 61.909 55.000 10.83 0.00 0.00 3.68
597 1185 2.763710 TAGCAGAGGGATGGCGCA 60.764 61.111 10.83 0.00 0.00 6.09
650 1238 1.088306 CTCTCAGTTAGGCTCGTCGT 58.912 55.000 0.00 0.00 0.00 4.34
707 1295 5.070001 TGAACCTTTACAACATCTCCCAAG 58.930 41.667 0.00 0.00 0.00 3.61
725 1313 7.383300 GCATTGAAATTTAGGCTGATATGAACC 59.617 37.037 0.00 0.00 0.00 3.62
729 1317 8.827177 ATTGCATTGAAATTTAGGCTGATATG 57.173 30.769 0.00 0.00 0.00 1.78
750 1338 3.555547 GGTCTGTTTGGTTGTTGAATTGC 59.444 43.478 0.00 0.00 0.00 3.56
760 1349 5.600484 TGATGTAATTTGGGTCTGTTTGGTT 59.400 36.000 0.00 0.00 0.00 3.67
768 1357 4.158394 GTGCATGTGATGTAATTTGGGTCT 59.842 41.667 0.00 0.00 0.00 3.85
954 1559 0.894141 CAGAGTGGAGTGGAGTGGAG 59.106 60.000 0.00 0.00 0.00 3.86
955 1560 1.188219 GCAGAGTGGAGTGGAGTGGA 61.188 60.000 0.00 0.00 0.00 4.02
956 1561 1.190833 AGCAGAGTGGAGTGGAGTGG 61.191 60.000 0.00 0.00 0.00 4.00
957 1562 0.246086 GAGCAGAGTGGAGTGGAGTG 59.754 60.000 0.00 0.00 0.00 3.51
958 1563 0.178950 TGAGCAGAGTGGAGTGGAGT 60.179 55.000 0.00 0.00 0.00 3.85
1113 1718 0.535335 TCTGACGCATCCAGGTTACC 59.465 55.000 0.00 0.00 32.73 2.85
1171 1776 3.627577 ACTCAGATGCGGCGAAATAAATT 59.372 39.130 12.98 0.00 0.00 1.82
1173 1778 2.351418 CACTCAGATGCGGCGAAATAAA 59.649 45.455 12.98 0.00 0.00 1.40
1195 1800 1.004918 GCTAGTTGTGCGGGAGTGT 60.005 57.895 0.00 0.00 0.00 3.55
1201 1806 3.559238 AAAAAGATGCTAGTTGTGCGG 57.441 42.857 0.00 0.00 0.00 5.69
1214 1819 4.706962 AGAAAGCATTCCGCCTAAAAAGAT 59.293 37.500 0.00 0.00 44.04 2.40
1272 1877 1.436336 CGAAGGGGGCGTACACTAG 59.564 63.158 0.00 0.00 0.00 2.57
1300 1905 4.811557 CAGTAGGAAATCTCGAATCAACCC 59.188 45.833 0.00 0.00 0.00 4.11
1387 1992 7.012610 TCCCTACTGTTTTTCGTTAAAAAGGAG 59.987 37.037 11.84 9.70 43.42 3.69
1424 2029 2.568003 TGGCACAACACAAAACCGA 58.432 47.368 0.00 0.00 31.92 4.69
1500 2105 6.015918 TCATTTAGGATCTGCTTTTTCCCAA 58.984 36.000 0.00 0.00 0.00 4.12
1501 2106 5.579047 TCATTTAGGATCTGCTTTTTCCCA 58.421 37.500 0.00 0.00 0.00 4.37
1504 2109 7.579761 AGGATCATTTAGGATCTGCTTTTTC 57.420 36.000 4.61 0.00 42.63 2.29
1690 2295 9.933723 ATTAATAAATGCAAGGAGGAATAATGC 57.066 29.630 0.00 0.00 37.52 3.56
1849 2465 9.798994 ACACTTATCTTGTAAACGGTCTTATAG 57.201 33.333 0.00 0.00 0.00 1.31
1852 2468 8.143193 TCAACACTTATCTTGTAAACGGTCTTA 58.857 33.333 0.00 0.00 0.00 2.10
1854 2470 6.518493 TCAACACTTATCTTGTAAACGGTCT 58.482 36.000 0.00 0.00 0.00 3.85
1855 2471 6.643770 TCTCAACACTTATCTTGTAAACGGTC 59.356 38.462 0.00 0.00 0.00 4.79
1856 2472 6.518493 TCTCAACACTTATCTTGTAAACGGT 58.482 36.000 0.00 0.00 0.00 4.83
1857 2473 7.384115 TCTTCTCAACACTTATCTTGTAAACGG 59.616 37.037 0.00 0.00 0.00 4.44
1858 2474 8.294341 TCTTCTCAACACTTATCTTGTAAACG 57.706 34.615 0.00 0.00 0.00 3.60
1917 2533 5.701290 AGTTTATAGTCTGTTTGGCTGTCAC 59.299 40.000 0.00 0.00 0.00 3.67
1933 2549 9.311916 CTGGAGTCATTTCTCTTCAGTTTATAG 57.688 37.037 0.00 0.00 35.11 1.31
1939 2555 5.559148 AACTGGAGTCATTTCTCTTCAGT 57.441 39.130 0.87 0.87 38.01 3.41
1993 2609 3.243805 CCACATGTTGTTCATTTGCCTCA 60.244 43.478 0.00 0.00 34.12 3.86
2597 3418 7.655521 AACTGCATACTACCAGTAGATAACA 57.344 36.000 11.71 4.14 41.16 2.41
2933 3757 9.173939 CAAGAATTGTCATTTGTCTTCTGTTAC 57.826 33.333 0.00 0.00 42.34 2.50
3157 3999 7.882791 TGAAGTTCTATGGCATTCTTTGAAGTA 59.117 33.333 4.78 0.00 0.00 2.24
3198 4041 5.805728 TCCCTGAAAAGGATAAGAAGACAC 58.194 41.667 0.00 0.00 0.00 3.67
3199 4042 6.448369 TTCCCTGAAAAGGATAAGAAGACA 57.552 37.500 0.00 0.00 32.10 3.41
3200 4043 7.309255 GGTTTTCCCTGAAAAGGATAAGAAGAC 60.309 40.741 2.42 0.00 41.32 3.01
3201 4044 6.719829 GGTTTTCCCTGAAAAGGATAAGAAGA 59.280 38.462 2.42 0.00 41.32 2.87
3202 4045 6.925211 GGTTTTCCCTGAAAAGGATAAGAAG 58.075 40.000 2.42 0.00 41.32 2.85
3324 4171 0.179018 GCCCGTCCAGCTCCAATATT 60.179 55.000 0.00 0.00 0.00 1.28
3433 4280 7.387265 ACCATACCATATTGTCACAAGGATA 57.613 36.000 1.37 0.00 0.00 2.59
3439 5224 6.239317 GCTCTCTACCATACCATATTGTCACA 60.239 42.308 0.00 0.00 0.00 3.58
3544 5329 4.940046 AGATACAATCAACCTTCACTGCAG 59.060 41.667 13.48 13.48 0.00 4.41
3623 5408 6.757010 ACTTGTGTAATTAACTCTAGGATGCG 59.243 38.462 0.00 0.00 31.42 4.73
3638 5423 5.278758 CCAATTTCAACGGGACTTGTGTAAT 60.279 40.000 0.00 0.00 0.00 1.89
3705 5490 0.618458 TATTGGGCGGTCAAGCTCTT 59.382 50.000 0.00 0.00 38.71 2.85
4010 5880 3.945285 GCCAAGATTTTCCTCGTAATCCA 59.055 43.478 0.00 0.00 32.43 3.41
4529 6561 3.535561 AGCCTCACACTGGATATTTTCG 58.464 45.455 0.00 0.00 0.00 3.46
4691 6753 6.884295 TGATTGACACCTGTCTTATTAAAGGG 59.116 38.462 6.97 0.00 44.99 3.95
4786 6848 8.567104 GGATAAAACAAAATGAAAAACAGGCAT 58.433 29.630 0.00 0.00 0.00 4.40
5122 7190 4.200874 TCATGTTTTGTCGGGTTTACAGT 58.799 39.130 0.00 0.00 0.00 3.55
5372 7440 8.439964 TCATTGATATCATCATCCCTAGAACA 57.560 34.615 6.17 0.00 39.39 3.18
5394 7462 6.790232 TTGTTTGGTCTTCTTCCTTTTCAT 57.210 33.333 0.00 0.00 0.00 2.57
5395 7463 6.210584 ACTTTGTTTGGTCTTCTTCCTTTTCA 59.789 34.615 0.00 0.00 0.00 2.69
6041 8111 9.950496 AATTGTGCCAACCATGTAATATTTTTA 57.050 25.926 0.00 0.00 0.00 1.52
6140 8210 4.228438 TCAGGATCTTCTGAGACTGTAGGA 59.772 45.833 0.00 0.00 38.70 2.94
6227 8297 5.157940 AGACACTGTGTATCAATGAAGCT 57.842 39.130 14.31 0.00 0.00 3.74
6435 10776 7.116376 CCGCATATAAATGTTACGAGAATGAGT 59.884 37.037 0.00 0.00 35.38 3.41
6483 10824 4.018506 TCTCTGAGCCCACATAAAATTCCA 60.019 41.667 0.00 0.00 0.00 3.53
6517 10858 7.189087 AGGGAAGGTAATATGTCCATGTTTTT 58.811 34.615 0.00 0.00 31.30 1.94
6565 10907 4.090090 AGTATTATGGATCGGAGGGAGTG 58.910 47.826 0.00 0.00 0.00 3.51
6661 11048 4.918810 AAACATTTGGAGACTGGAACAC 57.081 40.909 0.00 0.00 0.00 3.32
6711 11098 1.282157 AGAAGTACCAGCACCCCAATC 59.718 52.381 0.00 0.00 0.00 2.67
6839 12483 5.703130 GCTTACTGAGTCAAGGTTGAAGAAT 59.297 40.000 0.00 0.00 39.21 2.40
6857 12501 1.202498 GCGGTTATCTTCCGGCTTACT 60.202 52.381 0.00 0.00 46.90 2.24
6860 12504 1.520787 CGCGGTTATCTTCCGGCTT 60.521 57.895 0.00 0.00 46.90 4.35
6947 12591 2.348472 AGATTCCTCCCACTCCAAACA 58.652 47.619 0.00 0.00 0.00 2.83
6975 12619 1.002900 CGCTGAGATCTCTTCCTCGAC 60.003 57.143 22.95 3.65 32.30 4.20
7043 12687 2.706190 ACTAGTCTGGCAAACCTCAAGT 59.294 45.455 0.00 0.00 36.63 3.16
7044 12688 3.244215 TGACTAGTCTGGCAAACCTCAAG 60.244 47.826 23.01 0.00 36.63 3.02
7045 12689 2.703536 TGACTAGTCTGGCAAACCTCAA 59.296 45.455 23.01 0.00 36.63 3.02
7046 12690 2.037251 GTGACTAGTCTGGCAAACCTCA 59.963 50.000 23.01 0.00 36.63 3.86
7047 12691 2.689646 GTGACTAGTCTGGCAAACCTC 58.310 52.381 23.01 0.00 36.63 3.85
7048 12692 1.000955 CGTGACTAGTCTGGCAAACCT 59.999 52.381 23.01 0.00 36.63 3.50
7049 12693 1.429463 CGTGACTAGTCTGGCAAACC 58.571 55.000 23.01 0.00 0.00 3.27
7050 12694 1.270147 ACCGTGACTAGTCTGGCAAAC 60.270 52.381 25.50 14.16 31.81 2.93
7062 12706 3.761752 CCAAAATTATTCCCACCGTGACT 59.238 43.478 0.00 0.00 0.00 3.41
7063 12707 3.119280 CCCAAAATTATTCCCACCGTGAC 60.119 47.826 0.00 0.00 0.00 3.67
7080 12725 0.393808 GATTGCGGTAGGCTCCCAAA 60.394 55.000 0.00 0.00 44.05 3.28
7093 12738 6.485648 ACATCATATCATATCATGGGATTGCG 59.514 38.462 0.00 0.00 34.89 4.85
7117 12762 1.739371 CGCTGTTCAGGGTAGGCTTAC 60.739 57.143 8.41 0.00 0.00 2.34
7118 12763 0.535335 CGCTGTTCAGGGTAGGCTTA 59.465 55.000 8.41 0.00 0.00 3.09
7119 12764 1.296715 CGCTGTTCAGGGTAGGCTT 59.703 57.895 8.41 0.00 0.00 4.35
7121 12766 1.741770 CACGCTGTTCAGGGTAGGC 60.742 63.158 19.12 0.00 33.53 3.93
7122 12767 0.320374 TTCACGCTGTTCAGGGTAGG 59.680 55.000 19.12 10.42 33.53 3.18
7123 12768 1.429463 GTTCACGCTGTTCAGGGTAG 58.571 55.000 19.12 14.23 33.53 3.18
7124 12769 0.034337 GGTTCACGCTGTTCAGGGTA 59.966 55.000 19.12 5.52 33.53 3.69
7125 12770 1.227853 GGTTCACGCTGTTCAGGGT 60.228 57.895 15.04 15.04 35.26 4.34
7126 12771 0.535102 AAGGTTCACGCTGTTCAGGG 60.535 55.000 13.85 13.85 0.00 4.45
7162 12807 0.468226 AGCACTGACCTGGAAACGAA 59.532 50.000 0.00 0.00 0.00 3.85
7179 12824 1.712977 CTCTGGGCGATGCTTCAAGC 61.713 60.000 1.04 1.04 42.82 4.01
7180 12825 1.094073 CCTCTGGGCGATGCTTCAAG 61.094 60.000 0.08 0.00 0.00 3.02
7181 12826 1.078214 CCTCTGGGCGATGCTTCAA 60.078 57.895 0.08 0.00 0.00 2.69
7182 12827 2.586245 CCTCTGGGCGATGCTTCA 59.414 61.111 0.08 0.00 0.00 3.02
7194 12839 2.768344 ATGTACCCCCGGCCTCTG 60.768 66.667 0.00 0.00 0.00 3.35
7195 12840 2.446036 GATGTACCCCCGGCCTCT 60.446 66.667 0.00 0.00 0.00 3.69
7196 12841 3.557290 GGATGTACCCCCGGCCTC 61.557 72.222 0.00 0.00 0.00 4.70
7197 12842 4.103928 AGGATGTACCCCCGGCCT 62.104 66.667 0.00 0.00 40.05 5.19
7198 12843 3.557290 GAGGATGTACCCCCGGCC 61.557 72.222 0.00 0.00 40.05 6.13
7199 12844 3.557290 GGAGGATGTACCCCCGGC 61.557 72.222 0.00 0.00 40.05 6.13
7200 12845 0.986550 AAAGGAGGATGTACCCCCGG 60.987 60.000 0.00 0.00 40.05 5.73
7201 12846 0.916809 AAAAGGAGGATGTACCCCCG 59.083 55.000 0.00 0.00 40.05 5.73
7202 12847 1.920351 TGAAAAGGAGGATGTACCCCC 59.080 52.381 0.00 0.00 40.05 5.40
7203 12848 3.732048 TTGAAAAGGAGGATGTACCCC 57.268 47.619 0.00 0.00 40.05 4.95
7204 12849 5.321927 TCTTTTGAAAAGGAGGATGTACCC 58.678 41.667 16.79 0.00 40.05 3.69
7205 12850 6.894339 TTCTTTTGAAAAGGAGGATGTACC 57.106 37.500 16.79 0.00 35.17 3.34
7218 12863 4.081917 AGCACCGACCTTTTTCTTTTGAAA 60.082 37.500 0.00 0.00 45.65 2.69
7219 12864 3.445805 AGCACCGACCTTTTTCTTTTGAA 59.554 39.130 0.00 0.00 36.52 2.69
7220 12865 3.020984 AGCACCGACCTTTTTCTTTTGA 58.979 40.909 0.00 0.00 0.00 2.69
7221 12866 3.436700 AGCACCGACCTTTTTCTTTTG 57.563 42.857 0.00 0.00 0.00 2.44
7222 12867 3.445805 TCAAGCACCGACCTTTTTCTTTT 59.554 39.130 0.00 0.00 0.00 2.27
7223 12868 3.020984 TCAAGCACCGACCTTTTTCTTT 58.979 40.909 0.00 0.00 0.00 2.52
7224 12869 2.650322 TCAAGCACCGACCTTTTTCTT 58.350 42.857 0.00 0.00 0.00 2.52
7225 12870 2.341846 TCAAGCACCGACCTTTTTCT 57.658 45.000 0.00 0.00 0.00 2.52
7226 12871 3.372060 CTTTCAAGCACCGACCTTTTTC 58.628 45.455 0.00 0.00 0.00 2.29
7227 12872 3.436700 CTTTCAAGCACCGACCTTTTT 57.563 42.857 0.00 0.00 0.00 1.94
7327 12972 1.946081 TCAGCGCATTTGAGTGTTTCA 59.054 42.857 11.47 0.00 0.00 2.69
7397 13042 0.681733 TGCACCAGAAGAGACCAGAC 59.318 55.000 0.00 0.00 0.00 3.51
7398 13043 1.552337 GATGCACCAGAAGAGACCAGA 59.448 52.381 0.00 0.00 0.00 3.86
7399 13044 1.554160 AGATGCACCAGAAGAGACCAG 59.446 52.381 0.00 0.00 0.00 4.00
7400 13045 1.552337 GAGATGCACCAGAAGAGACCA 59.448 52.381 0.00 0.00 0.00 4.02
7401 13046 1.470632 CGAGATGCACCAGAAGAGACC 60.471 57.143 0.00 0.00 0.00 3.85
7454 13099 6.551385 AAACATTTGTTGAAGTTTGCACAA 57.449 29.167 0.00 0.00 38.44 3.33
7466 13111 3.001533 GCAGGCACTCAAAACATTTGTTG 59.998 43.478 0.00 3.66 35.35 3.33
7467 13112 3.197265 GCAGGCACTCAAAACATTTGTT 58.803 40.909 3.06 0.00 34.60 2.83
7499 13144 6.016360 TGACTTCCACGAATGTCATTTTCATT 60.016 34.615 0.00 0.00 38.08 2.57
7553 13199 7.087007 TCGATGTTGCAAAAATGCTATTTACA 58.913 30.769 0.00 0.00 35.49 2.41
7576 13222 3.367607 TCGTGGCAAGAAAACAAAATCG 58.632 40.909 0.00 0.00 0.00 3.34
7588 13234 3.119388 ACATTCATGGAAATCGTGGCAAG 60.119 43.478 0.00 0.00 33.31 4.01
7638 13285 6.998968 TGCCAAACTTTGACAAATGATTTT 57.001 29.167 0.05 0.00 0.00 1.82
7642 13289 6.808008 TTTTTGCCAAACTTTGACAAATGA 57.192 29.167 14.44 6.38 41.50 2.57
7700 13348 7.599998 CCCTTGATGAACAGTAAAATCAAAAGG 59.400 37.037 10.53 10.53 38.27 3.11
7718 13366 1.407979 GGAGCTCAAATGCCCTTGATG 59.592 52.381 17.19 0.00 34.86 3.07
7724 13372 1.821332 CTCCGGAGCTCAAATGCCC 60.821 63.158 20.67 0.00 0.00 5.36
7757 13406 8.883731 CCATTTTATGCGTCCCTTCTATATTAG 58.116 37.037 0.00 0.00 0.00 1.73
7759 13408 6.151144 GCCATTTTATGCGTCCCTTCTATATT 59.849 38.462 0.00 0.00 0.00 1.28
7771 13420 3.016031 TCATGTGAGCCATTTTATGCGT 58.984 40.909 0.00 0.00 0.00 5.24
7785 13434 1.003839 GTGTTCGGGGCTCATGTGA 60.004 57.895 0.00 0.00 0.00 3.58
7799 13448 4.585879 AGTAAATGGCATACCGAAGTGTT 58.414 39.130 0.00 0.00 39.70 3.32
7809 13458 6.126409 CCCAACCTTTCTAGTAAATGGCATA 58.874 40.000 0.00 0.00 0.00 3.14
7826 13475 0.174617 CAACAAAACACGCCCAACCT 59.825 50.000 0.00 0.00 0.00 3.50
7827 13476 0.108567 ACAACAAAACACGCCCAACC 60.109 50.000 0.00 0.00 0.00 3.77
7828 13477 1.715993 AACAACAAAACACGCCCAAC 58.284 45.000 0.00 0.00 0.00 3.77
7892 13541 1.526575 AAATGGGCTGCCGAAGTGTG 61.527 55.000 13.40 0.00 0.00 3.82
7893 13542 0.037590 TAAATGGGCTGCCGAAGTGT 59.962 50.000 13.40 0.00 0.00 3.55
7894 13543 0.451783 GTAAATGGGCTGCCGAAGTG 59.548 55.000 13.40 0.00 0.00 3.16
7895 13544 0.328258 AGTAAATGGGCTGCCGAAGT 59.672 50.000 13.40 3.66 0.00 3.01
7896 13545 2.158957 TCTAGTAAATGGGCTGCCGAAG 60.159 50.000 13.40 1.91 0.00 3.79
7897 13546 1.834896 TCTAGTAAATGGGCTGCCGAA 59.165 47.619 13.40 3.60 0.00 4.30
7898 13547 1.491668 TCTAGTAAATGGGCTGCCGA 58.508 50.000 13.40 9.69 0.00 5.54
7899 13548 2.213499 CTTCTAGTAAATGGGCTGCCG 58.787 52.381 13.40 0.00 0.00 5.69
7900 13549 2.172717 TCCTTCTAGTAAATGGGCTGCC 59.827 50.000 11.05 11.05 0.00 4.85
7901 13550 3.560636 TCCTTCTAGTAAATGGGCTGC 57.439 47.619 0.00 0.00 0.00 5.25
7902 13551 4.823989 CCAATCCTTCTAGTAAATGGGCTG 59.176 45.833 0.00 0.00 0.00 4.85
7903 13552 4.726825 TCCAATCCTTCTAGTAAATGGGCT 59.273 41.667 0.00 0.00 0.00 5.19
7904 13553 4.822350 GTCCAATCCTTCTAGTAAATGGGC 59.178 45.833 0.00 0.00 0.00 5.36
7905 13554 5.057149 CGTCCAATCCTTCTAGTAAATGGG 58.943 45.833 0.00 0.00 0.00 4.00
7906 13555 5.523916 CACGTCCAATCCTTCTAGTAAATGG 59.476 44.000 0.00 0.00 0.00 3.16
7907 13556 6.106673 ACACGTCCAATCCTTCTAGTAAATG 58.893 40.000 0.00 0.00 0.00 2.32
7908 13557 6.295719 ACACGTCCAATCCTTCTAGTAAAT 57.704 37.500 0.00 0.00 0.00 1.40
7909 13558 5.733620 ACACGTCCAATCCTTCTAGTAAA 57.266 39.130 0.00 0.00 0.00 2.01
7910 13559 5.733620 AACACGTCCAATCCTTCTAGTAA 57.266 39.130 0.00 0.00 0.00 2.24
7911 13560 5.733620 AAACACGTCCAATCCTTCTAGTA 57.266 39.130 0.00 0.00 0.00 1.82
7912 13561 4.618920 AAACACGTCCAATCCTTCTAGT 57.381 40.909 0.00 0.00 0.00 2.57
7913 13562 4.378459 GCAAAACACGTCCAATCCTTCTAG 60.378 45.833 0.00 0.00 0.00 2.43
7914 13563 3.500680 GCAAAACACGTCCAATCCTTCTA 59.499 43.478 0.00 0.00 0.00 2.10
7915 13564 2.293399 GCAAAACACGTCCAATCCTTCT 59.707 45.455 0.00 0.00 0.00 2.85
7916 13565 2.293399 AGCAAAACACGTCCAATCCTTC 59.707 45.455 0.00 0.00 0.00 3.46
7917 13566 2.034558 CAGCAAAACACGTCCAATCCTT 59.965 45.455 0.00 0.00 0.00 3.36
7918 13567 1.608590 CAGCAAAACACGTCCAATCCT 59.391 47.619 0.00 0.00 0.00 3.24
7919 13568 1.606668 TCAGCAAAACACGTCCAATCC 59.393 47.619 0.00 0.00 0.00 3.01
7920 13569 2.918131 GCTCAGCAAAACACGTCCAATC 60.918 50.000 0.00 0.00 0.00 2.67
7921 13570 1.001378 GCTCAGCAAAACACGTCCAAT 60.001 47.619 0.00 0.00 0.00 3.16
7922 13571 0.380378 GCTCAGCAAAACACGTCCAA 59.620 50.000 0.00 0.00 0.00 3.53
7923 13572 0.463654 AGCTCAGCAAAACACGTCCA 60.464 50.000 0.00 0.00 0.00 4.02
7924 13573 1.194772 GTAGCTCAGCAAAACACGTCC 59.805 52.381 0.00 0.00 0.00 4.79
7925 13574 2.135933 AGTAGCTCAGCAAAACACGTC 58.864 47.619 0.00 0.00 0.00 4.34
7926 13575 2.240493 AGTAGCTCAGCAAAACACGT 57.760 45.000 0.00 0.00 0.00 4.49
7927 13576 4.152402 ACAATAGTAGCTCAGCAAAACACG 59.848 41.667 0.00 0.00 0.00 4.49
7928 13577 5.613358 ACAATAGTAGCTCAGCAAAACAC 57.387 39.130 0.00 0.00 0.00 3.32
7929 13578 5.530915 ACAACAATAGTAGCTCAGCAAAACA 59.469 36.000 0.00 0.00 0.00 2.83
7930 13579 6.002062 ACAACAATAGTAGCTCAGCAAAAC 57.998 37.500 0.00 0.00 0.00 2.43
7931 13580 6.262049 TGAACAACAATAGTAGCTCAGCAAAA 59.738 34.615 0.00 0.00 0.00 2.44
7932 13581 5.762711 TGAACAACAATAGTAGCTCAGCAAA 59.237 36.000 0.00 0.00 0.00 3.68
7933 13582 5.304778 TGAACAACAATAGTAGCTCAGCAA 58.695 37.500 0.00 0.00 0.00 3.91
7934 13583 4.893608 TGAACAACAATAGTAGCTCAGCA 58.106 39.130 0.00 0.00 0.00 4.41
7935 13584 5.862924 TTGAACAACAATAGTAGCTCAGC 57.137 39.130 0.00 0.00 33.18 4.26
7936 13585 9.683069 AAATTTTGAACAACAATAGTAGCTCAG 57.317 29.630 0.00 0.00 38.36 3.35
7937 13586 9.677567 GAAATTTTGAACAACAATAGTAGCTCA 57.322 29.630 0.00 0.00 38.36 4.26
7938 13587 9.899226 AGAAATTTTGAACAACAATAGTAGCTC 57.101 29.630 0.00 0.00 38.36 4.09
7946 13595 9.840427 CGGTATCTAGAAATTTTGAACAACAAT 57.160 29.630 0.00 0.00 38.36 2.71
7947 13596 7.806014 GCGGTATCTAGAAATTTTGAACAACAA 59.194 33.333 0.00 0.00 36.65 2.83
7948 13597 7.041030 TGCGGTATCTAGAAATTTTGAACAACA 60.041 33.333 0.00 0.00 0.00 3.33
7949 13598 7.302524 TGCGGTATCTAGAAATTTTGAACAAC 58.697 34.615 0.00 0.00 0.00 3.32
7950 13599 7.174253 ACTGCGGTATCTAGAAATTTTGAACAA 59.826 33.333 0.00 0.00 0.00 2.83
7951 13600 6.653320 ACTGCGGTATCTAGAAATTTTGAACA 59.347 34.615 0.00 0.00 0.00 3.18
7952 13601 7.073342 ACTGCGGTATCTAGAAATTTTGAAC 57.927 36.000 0.00 0.00 0.00 3.18
7953 13602 8.255206 TCTACTGCGGTATCTAGAAATTTTGAA 58.745 33.333 5.70 0.00 0.00 2.69
7954 13603 7.778083 TCTACTGCGGTATCTAGAAATTTTGA 58.222 34.615 5.70 0.00 0.00 2.69
7955 13604 8.594881 ATCTACTGCGGTATCTAGAAATTTTG 57.405 34.615 5.70 0.00 0.00 2.44
8003 13652 5.714806 CCTGCTGAAGATTTACCCCTAAAAA 59.285 40.000 0.00 0.00 0.00 1.94
8004 13653 5.222254 ACCTGCTGAAGATTTACCCCTAAAA 60.222 40.000 0.00 0.00 0.00 1.52
8005 13654 4.291249 ACCTGCTGAAGATTTACCCCTAAA 59.709 41.667 0.00 0.00 0.00 1.85
8006 13655 3.850173 ACCTGCTGAAGATTTACCCCTAA 59.150 43.478 0.00 0.00 0.00 2.69
8007 13656 3.460825 ACCTGCTGAAGATTTACCCCTA 58.539 45.455 0.00 0.00 0.00 3.53
8008 13657 2.279173 ACCTGCTGAAGATTTACCCCT 58.721 47.619 0.00 0.00 0.00 4.79
8009 13658 2.808906 ACCTGCTGAAGATTTACCCC 57.191 50.000 0.00 0.00 0.00 4.95
8010 13659 4.755266 TCTACCTGCTGAAGATTTACCC 57.245 45.455 0.00 0.00 0.00 3.69
8011 13660 7.291411 TCTATCTACCTGCTGAAGATTTACC 57.709 40.000 11.67 0.00 32.39 2.85
8014 13663 9.373450 TCTTATCTATCTACCTGCTGAAGATTT 57.627 33.333 11.67 3.90 32.39 2.17
8015 13664 8.948401 TCTTATCTATCTACCTGCTGAAGATT 57.052 34.615 11.67 1.16 32.39 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.