Multiple sequence alignment - TraesCS6A01G214500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G214500 chr6A 100.000 8037 0 0 1 8037 392944003 392935967 0.000000e+00 14842.0
1 TraesCS6A01G214500 chr6A 99.465 187 1 0 4433 4619 80878883 80879069 2.780000e-89 340.0
2 TraesCS6A01G214500 chr6A 89.024 82 6 3 3592 3671 61399228 61399308 1.850000e-16 99.0
3 TraesCS6A01G214500 chr6A 95.652 46 1 1 2026 2071 440263793 440263837 1.120000e-08 73.1
4 TraesCS6A01G214500 chr6D 95.871 3463 96 23 4618 8037 274305321 274308779 0.000000e+00 5559.0
5 TraesCS6A01G214500 chr6D 97.436 2028 31 8 2426 4438 274303314 274305335 0.000000e+00 3437.0
6 TraesCS6A01G214500 chr6D 96.547 1535 33 7 898 2424 274301630 274303152 0.000000e+00 2523.0
7 TraesCS6A01G214500 chr6D 97.619 42 0 1 2030 2071 305743102 305743142 4.020000e-08 71.3
8 TraesCS6A01G214500 chr6B 94.111 2666 95 24 1805 4438 436493068 436495703 0.000000e+00 3997.0
9 TraesCS6A01G214500 chr6B 96.003 1526 56 5 4618 6141 436495689 436497211 0.000000e+00 2475.0
10 TraesCS6A01G214500 chr6B 92.242 1173 53 16 6114 7256 436498089 436499253 0.000000e+00 1628.0
11 TraesCS6A01G214500 chr6B 93.495 907 36 6 898 1782 436492105 436493010 0.000000e+00 1327.0
12 TraesCS6A01G214500 chr6B 85.846 325 37 6 7687 8008 436499548 436499866 3.590000e-88 337.0
13 TraesCS6A01G214500 chr6B 84.348 230 11 11 7412 7629 436499249 436499465 1.370000e-47 202.0
14 TraesCS6A01G214500 chr6B 92.920 113 8 0 2900 3012 67469331 67469219 1.790000e-36 165.0
15 TraesCS6A01G214500 chr6B 97.727 44 0 1 2028 2071 470820034 470819992 3.110000e-09 75.0
16 TraesCS6A01G214500 chr6B 86.154 65 8 1 7707 7770 570150359 570150423 1.450000e-07 69.4
17 TraesCS6A01G214500 chr2B 88.184 914 86 10 1 898 105766095 105765188 0.000000e+00 1070.0
18 TraesCS6A01G214500 chr2B 99.465 187 1 0 4431 4617 294040267 294040081 2.780000e-89 340.0
19 TraesCS6A01G214500 chr2B 99.465 187 1 0 4433 4619 367730704 367730890 2.780000e-89 340.0
20 TraesCS6A01G214500 chr2A 87.649 923 95 9 1 905 345525775 345526696 0.000000e+00 1055.0
21 TraesCS6A01G214500 chr2A 84.182 923 113 20 1 899 618996445 618997358 0.000000e+00 865.0
22 TraesCS6A01G214500 chr2A 87.845 181 8 8 3471 3638 286414870 286415049 4.920000e-47 200.0
23 TraesCS6A01G214500 chr2A 81.416 113 12 8 1961 2072 704059617 704059513 5.170000e-12 84.2
24 TraesCS6A01G214500 chr5D 87.076 913 102 8 1 898 30546106 30547017 0.000000e+00 1018.0
25 TraesCS6A01G214500 chr4B 86.593 910 104 10 7 900 421496552 421497459 0.000000e+00 989.0
26 TraesCS6A01G214500 chr4B 99.465 187 1 0 4433 4619 351874803 351874617 2.780000e-89 340.0
27 TraesCS6A01G214500 chr4B 90.769 65 5 1 7707 7770 573690892 573690828 1.440000e-12 86.1
28 TraesCS6A01G214500 chr4B 82.432 74 11 2 2003 2075 428465428 428465500 6.730000e-06 63.9
29 TraesCS6A01G214500 chr7B 86.389 911 108 6 7 902 544418503 544417594 0.000000e+00 981.0
30 TraesCS6A01G214500 chr7B 86.598 194 15 6 3470 3653 99134273 99134081 3.800000e-48 204.0
31 TraesCS6A01G214500 chr3D 85.917 916 105 12 1 898 268138384 268137475 0.000000e+00 955.0
32 TraesCS6A01G214500 chr7D 85.839 918 104 15 1 899 552318782 552319692 0.000000e+00 952.0
33 TraesCS6A01G214500 chr7D 85.464 915 114 9 1 899 419799873 419798962 0.000000e+00 935.0
34 TraesCS6A01G214500 chrUn 84.074 923 118 16 1 901 364693103 364694018 0.000000e+00 863.0
35 TraesCS6A01G214500 chrUn 84.074 923 118 16 1 901 410965252 410966167 0.000000e+00 863.0
36 TraesCS6A01G214500 chrUn 93.636 110 6 1 2900 3009 313033773 313033881 6.450000e-36 163.0
37 TraesCS6A01G214500 chrUn 93.636 110 6 1 2900 3009 313037568 313037676 6.450000e-36 163.0
38 TraesCS6A01G214500 chrUn 93.636 110 6 1 2900 3009 327964244 327964352 6.450000e-36 163.0
39 TraesCS6A01G214500 chr1A 84.022 920 119 15 1 899 6543764 6542852 0.000000e+00 859.0
40 TraesCS6A01G214500 chr1A 100.000 185 0 0 4433 4617 333878908 333878724 7.720000e-90 342.0
41 TraesCS6A01G214500 chr7A 81.223 932 113 27 1 898 520909836 520908933 0.000000e+00 695.0
42 TraesCS6A01G214500 chr7A 82.381 210 11 10 3474 3657 580052877 580052668 8.350000e-35 159.0
43 TraesCS6A01G214500 chr7A 96.875 32 1 0 2040 2071 669518867 669518836 4.000000e-03 54.7
44 TraesCS6A01G214500 chr5B 100.000 187 0 0 4433 4619 107732568 107732754 5.970000e-91 346.0
45 TraesCS6A01G214500 chr5B 92.857 112 8 0 2900 3011 237976831 237976720 6.450000e-36 163.0
46 TraesCS6A01G214500 chr5A 100.000 186 0 0 4432 4617 227709968 227709783 2.150000e-90 344.0
47 TraesCS6A01G214500 chr5A 100.000 186 0 0 4433 4618 326040876 326040691 2.150000e-90 344.0
48 TraesCS6A01G214500 chr3A 99.462 186 1 0 4433 4618 329511539 329511724 9.990000e-89 339.0
49 TraesCS6A01G214500 chr3A 91.477 176 11 3 3477 3651 397699131 397699303 1.040000e-58 239.0
50 TraesCS6A01G214500 chr3A 90.909 176 12 3 3477 3651 397649155 397649327 4.850000e-57 233.0
51 TraesCS6A01G214500 chr2D 92.045 176 10 3 3477 3651 464410090 464409918 2.240000e-60 244.0
52 TraesCS6A01G214500 chr2D 89.773 176 14 3 3479 3653 246179498 246179326 1.050000e-53 222.0
53 TraesCS6A01G214500 chr2D 87.826 115 12 2 2900 3013 20060063 20059950 5.060000e-27 134.0
54 TraesCS6A01G214500 chr1B 86.885 183 16 6 3477 3652 667979821 667980002 1.770000e-46 198.0
55 TraesCS6A01G214500 chr1B 94.545 110 6 0 2900 3009 625168435 625168326 3.860000e-38 171.0
56 TraesCS6A01G214500 chr1B 86.364 66 8 1 7706 7770 15901643 15901578 4.020000e-08 71.3
57 TraesCS6A01G214500 chr4D 93.548 124 6 2 3471 3592 190142121 190141998 4.950000e-42 183.0
58 TraesCS6A01G214500 chr4D 83.333 66 9 2 2172 2236 362413310 362413246 8.710000e-05 60.2
59 TraesCS6A01G214500 chr3B 93.750 112 7 0 2900 3011 8549076 8549187 1.390000e-37 169.0
60 TraesCS6A01G214500 chr4A 84.906 53 7 1 2024 2075 117281943 117281891 1.500000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G214500 chr6A 392935967 392944003 8036 True 14842.000000 14842 100.0000 1 8037 1 chr6A.!!$R1 8036
1 TraesCS6A01G214500 chr6D 274301630 274308779 7149 False 3839.666667 5559 96.6180 898 8037 3 chr6D.!!$F2 7139
2 TraesCS6A01G214500 chr6B 436492105 436499866 7761 False 1661.000000 3997 91.0075 898 8008 6 chr6B.!!$F2 7110
3 TraesCS6A01G214500 chr2B 105765188 105766095 907 True 1070.000000 1070 88.1840 1 898 1 chr2B.!!$R1 897
4 TraesCS6A01G214500 chr2A 345525775 345526696 921 False 1055.000000 1055 87.6490 1 905 1 chr2A.!!$F2 904
5 TraesCS6A01G214500 chr2A 618996445 618997358 913 False 865.000000 865 84.1820 1 899 1 chr2A.!!$F3 898
6 TraesCS6A01G214500 chr5D 30546106 30547017 911 False 1018.000000 1018 87.0760 1 898 1 chr5D.!!$F1 897
7 TraesCS6A01G214500 chr4B 421496552 421497459 907 False 989.000000 989 86.5930 7 900 1 chr4B.!!$F1 893
8 TraesCS6A01G214500 chr7B 544417594 544418503 909 True 981.000000 981 86.3890 7 902 1 chr7B.!!$R2 895
9 TraesCS6A01G214500 chr3D 268137475 268138384 909 True 955.000000 955 85.9170 1 898 1 chr3D.!!$R1 897
10 TraesCS6A01G214500 chr7D 552318782 552319692 910 False 952.000000 952 85.8390 1 899 1 chr7D.!!$F1 898
11 TraesCS6A01G214500 chr7D 419798962 419799873 911 True 935.000000 935 85.4640 1 899 1 chr7D.!!$R1 898
12 TraesCS6A01G214500 chrUn 364693103 364694018 915 False 863.000000 863 84.0740 1 901 1 chrUn.!!$F2 900
13 TraesCS6A01G214500 chrUn 410965252 410966167 915 False 863.000000 863 84.0740 1 901 1 chrUn.!!$F3 900
14 TraesCS6A01G214500 chr1A 6542852 6543764 912 True 859.000000 859 84.0220 1 899 1 chr1A.!!$R1 898
15 TraesCS6A01G214500 chr7A 520908933 520909836 903 True 695.000000 695 81.2230 1 898 1 chr7A.!!$R1 897

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
332 355 0.037790 GCAGGTCACAGAGTGGAGAC 60.038 60.000 0.00 0.00 33.87 3.36 F
891 922 0.109342 AGCGGCATGATTTCCCCTAG 59.891 55.000 1.45 0.00 0.00 3.02 F
1748 1801 1.135139 GAAGCTAGTGACTGCATCGGA 59.865 52.381 0.00 0.00 0.00 4.55 F
2341 2441 0.880278 TGGAGCTCGAGCACACAAAC 60.880 55.000 36.87 18.65 45.16 2.93 F
3079 3352 1.530655 CCCTTGTGAAACCGCCCTT 60.531 57.895 0.00 0.00 34.36 3.95 F
4544 4839 0.170339 CCCAAAGCGGTCGATTTTCC 59.830 55.000 3.79 0.00 30.80 3.13 F
4609 4904 0.108041 CGCCTTAGGGACGCCTTTAA 60.108 55.000 0.00 0.00 33.58 1.52 F
4610 4905 1.676615 CGCCTTAGGGACGCCTTTAAA 60.677 52.381 0.00 0.00 33.58 1.52 F
6942 8155 1.249407 GACTTGAGAGACACCGACCT 58.751 55.000 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1189 1227 1.614241 GCGGGGAGGAAGCAACTAGA 61.614 60.000 0.00 0.00 0.00 2.43 R
2341 2441 0.110644 GAAGAAACAAGAGTGCGGCG 60.111 55.000 0.51 0.51 0.00 6.46 R
3671 3952 1.202336 GGAACACGGTAGATGTACCCG 60.202 57.143 13.20 10.60 45.61 5.28 R
3948 4229 4.588899 TGTACATGTATGCAGCTTCCTTT 58.411 39.130 9.18 0.00 0.00 3.11 R
4590 4885 0.108041 TTAAAGGCGTCCCTAAGGCG 60.108 55.000 0.00 0.00 41.90 5.52 R
6386 7595 1.520600 CCCCGTAACCACTGCCAAAC 61.521 60.000 0.00 0.00 0.00 2.93 R
6703 7913 8.976353 ACTGACAATTTAACATTGGGCAATATA 58.024 29.630 12.13 0.00 33.56 0.86 R
6945 8158 0.108520 TTGACGGCATAACGAGGGAC 60.109 55.000 0.00 0.00 37.61 4.46 R
7803 9107 1.198867 GTGCGCATGTTTGGTATGTGA 59.801 47.619 15.91 0.00 38.07 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 58 1.964223 GCCCGAGAAGAGACCATCATA 59.036 52.381 0.00 0.00 0.00 2.15
107 109 4.761739 GTCATGTTTTGGGAGATGTTGAGA 59.238 41.667 0.00 0.00 0.00 3.27
117 119 1.973515 AGATGTTGAGAGCACAGGTCA 59.026 47.619 0.00 0.00 31.89 4.02
148 150 4.411256 TGGAGGAACCACCGAAATATAC 57.589 45.455 3.17 0.00 44.64 1.47
283 299 1.090052 CAAGGAACGGGCGAAGGATC 61.090 60.000 0.00 0.00 0.00 3.36
305 322 2.887783 ACACCGCCACATGAAATAACAA 59.112 40.909 0.00 0.00 0.00 2.83
319 336 5.468746 TGAAATAACAACTACTGTGCAGGTC 59.531 40.000 4.11 0.00 38.67 3.85
320 337 4.617253 ATAACAACTACTGTGCAGGTCA 57.383 40.909 4.11 0.00 38.67 4.02
332 355 0.037790 GCAGGTCACAGAGTGGAGAC 60.038 60.000 0.00 0.00 33.87 3.36
382 405 1.081840 GCCAAAGACTGTTCAGCGC 60.082 57.895 0.00 0.00 0.00 5.92
418 441 4.467769 CTGCTGGATGGGTAAAGATCAAT 58.532 43.478 0.00 0.00 0.00 2.57
470 493 4.779733 GAGGAGGAGGGGCGGTCA 62.780 72.222 0.00 0.00 0.00 4.02
529 552 3.392882 CCACTTCTTTCCAAACATTGCC 58.607 45.455 0.00 0.00 0.00 4.52
706 729 5.363939 GTGGAGGAGATAAAGGAGATGTTG 58.636 45.833 0.00 0.00 0.00 3.33
779 802 2.291741 GCCGCTCATAAGCTAGCAAAAT 59.708 45.455 18.83 4.00 46.91 1.82
813 844 1.004745 GAAGAGATTTGGGTGGGCTCA 59.995 52.381 0.00 0.00 0.00 4.26
857 888 8.696374 AGATGTAATTTCAGACGAGATTCCTAA 58.304 33.333 0.00 0.00 29.37 2.69
891 922 0.109342 AGCGGCATGATTTCCCCTAG 59.891 55.000 1.45 0.00 0.00 3.02
1189 1227 5.371769 GGTAATAAACCCTAATCCCAGTCCT 59.628 44.000 0.00 0.00 43.16 3.85
1193 1231 3.621682 ACCCTAATCCCAGTCCTCTAG 57.378 52.381 0.00 0.00 0.00 2.43
1397 1435 1.743252 CGAGCTGCCACTTCCCTTC 60.743 63.158 0.00 0.00 0.00 3.46
1511 1558 3.958147 AACCATGGACAGAGGCGCG 62.958 63.158 21.47 0.00 0.00 6.86
1748 1801 1.135139 GAAGCTAGTGACTGCATCGGA 59.865 52.381 0.00 0.00 0.00 4.55
1879 1977 6.878923 TGTGTGATTCCCATAGTTTTCTGTAG 59.121 38.462 0.00 0.00 0.00 2.74
1889 1987 7.220030 CCATAGTTTTCTGTAGCAGATGGTAT 58.780 38.462 0.00 0.00 40.39 2.73
1890 1988 7.716998 CCATAGTTTTCTGTAGCAGATGGTATT 59.283 37.037 0.00 0.00 40.39 1.89
2341 2441 0.880278 TGGAGCTCGAGCACACAAAC 60.880 55.000 36.87 18.65 45.16 2.93
2345 2445 3.281751 CTCGAGCACACAAACGCCG 62.282 63.158 0.00 0.00 0.00 6.46
2424 2524 4.505742 GGGATCCTTAGGCTATGGAACTTG 60.506 50.000 27.13 3.61 35.86 3.16
2495 2755 2.730672 CGCCGCTGTGCTACTGTTC 61.731 63.158 0.00 0.00 0.00 3.18
2501 2761 3.057019 CGCTGTGCTACTGTTCTAAACA 58.943 45.455 0.00 0.00 39.52 2.83
2878 3150 2.086610 AACTGTTGGCAAGGTTGGAT 57.913 45.000 14.87 0.00 0.00 3.41
2935 3207 2.294879 TGAAGGGGATTGGGGAGGAATA 60.295 50.000 0.00 0.00 0.00 1.75
3079 3352 1.530655 CCCTTGTGAAACCGCCCTT 60.531 57.895 0.00 0.00 34.36 3.95
3297 3571 3.118261 TCTGGACCCTTCTTGATGTATGC 60.118 47.826 0.00 0.00 0.00 3.14
3671 3952 8.296713 TGCTCTTAGTTTGACATTCAATAAACC 58.703 33.333 0.00 0.00 36.11 3.27
3686 3967 1.560505 AAACCGGGTACATCTACCGT 58.439 50.000 6.32 0.00 45.85 4.83
3853 4134 3.850273 ACGTACTGCTCTTACGAAATTCG 59.150 43.478 14.35 14.35 44.11 3.34
3898 4179 9.607285 TTTGAATGTTCTAGAAAAATTCGTAGC 57.393 29.630 23.86 11.16 32.55 3.58
3941 4222 7.538334 CACAGTCACCAATTTATGTGTGTATTG 59.462 37.037 0.00 0.00 34.71 1.90
3960 4241 5.726980 ATTGATGTTTAAAGGAAGCTGCA 57.273 34.783 1.02 0.00 0.00 4.41
4035 4330 3.138304 TGAACGCATTTGTAGCTTCACT 58.862 40.909 0.00 0.00 30.15 3.41
4134 4429 6.833041 TGACATTTCCACCTTGAGTTTAGTA 58.167 36.000 0.00 0.00 0.00 1.82
4387 4682 2.715763 ACCCCCAGAACTGAGAACTA 57.284 50.000 3.19 0.00 0.00 2.24
4402 4697 5.925509 TGAGAACTACATATTAACCCCTGC 58.074 41.667 0.00 0.00 0.00 4.85
4432 4727 2.989422 ACGCCAAATCACTTAACTGC 57.011 45.000 0.00 0.00 0.00 4.40
4433 4728 2.504367 ACGCCAAATCACTTAACTGCT 58.496 42.857 0.00 0.00 0.00 4.24
4434 4729 3.670625 ACGCCAAATCACTTAACTGCTA 58.329 40.909 0.00 0.00 0.00 3.49
4435 4730 4.261801 ACGCCAAATCACTTAACTGCTAT 58.738 39.130 0.00 0.00 0.00 2.97
4436 4731 4.094887 ACGCCAAATCACTTAACTGCTATG 59.905 41.667 0.00 0.00 0.00 2.23
4437 4732 4.094887 CGCCAAATCACTTAACTGCTATGT 59.905 41.667 0.00 0.00 0.00 2.29
4438 4733 5.391950 CGCCAAATCACTTAACTGCTATGTT 60.392 40.000 0.00 0.00 0.00 2.71
4439 4734 6.389906 GCCAAATCACTTAACTGCTATGTTT 58.610 36.000 0.00 0.00 0.00 2.83
4440 4735 6.868339 GCCAAATCACTTAACTGCTATGTTTT 59.132 34.615 0.00 0.00 0.00 2.43
4441 4736 7.384932 GCCAAATCACTTAACTGCTATGTTTTT 59.615 33.333 0.00 0.00 0.00 1.94
4442 4737 9.906660 CCAAATCACTTAACTGCTATGTTTTTA 57.093 29.630 0.00 0.00 0.00 1.52
4446 4741 7.590279 TCACTTAACTGCTATGTTTTTAAGGC 58.410 34.615 0.00 0.00 35.12 4.35
4447 4742 6.523201 CACTTAACTGCTATGTTTTTAAGGCG 59.477 38.462 0.00 0.00 35.12 5.52
4448 4743 6.428771 ACTTAACTGCTATGTTTTTAAGGCGA 59.571 34.615 0.00 0.00 35.12 5.54
4449 4744 4.680171 ACTGCTATGTTTTTAAGGCGAC 57.320 40.909 0.00 0.00 0.00 5.19
4450 4745 3.124636 ACTGCTATGTTTTTAAGGCGACG 59.875 43.478 0.00 0.00 0.00 5.12
4451 4746 2.159626 TGCTATGTTTTTAAGGCGACGC 60.160 45.455 12.43 12.43 0.00 5.19
4463 4758 2.491152 CGACGCCTTACCGCCTTA 59.509 61.111 0.00 0.00 0.00 2.69
4464 4759 1.588139 CGACGCCTTACCGCCTTAG 60.588 63.158 0.00 0.00 0.00 2.18
4465 4760 1.227176 GACGCCTTACCGCCTTAGG 60.227 63.158 0.00 0.00 37.30 2.69
4466 4761 2.108362 CGCCTTACCGCCTTAGGG 59.892 66.667 0.00 0.00 35.02 3.53
4467 4762 2.428925 CGCCTTACCGCCTTAGGGA 61.429 63.158 0.00 0.00 35.02 4.20
4468 4763 1.446366 GCCTTACCGCCTTAGGGAG 59.554 63.158 0.00 0.00 35.02 4.30
4514 4809 4.467084 CTAGGCGGGCGCTTTGGA 62.467 66.667 7.64 0.00 41.60 3.53
4515 4810 4.770874 TAGGCGGGCGCTTTGGAC 62.771 66.667 7.64 0.00 41.60 4.02
4523 4818 3.195698 CGCTTTGGACGCCTAGGC 61.196 66.667 24.75 24.75 37.85 3.93
4541 4836 3.274067 GCCCAAAGCGGTCGATTT 58.726 55.556 0.55 0.55 33.72 2.17
4542 4837 1.584495 GCCCAAAGCGGTCGATTTT 59.416 52.632 3.79 0.00 30.80 1.82
4543 4838 0.456142 GCCCAAAGCGGTCGATTTTC 60.456 55.000 3.79 0.00 30.80 2.29
4544 4839 0.170339 CCCAAAGCGGTCGATTTTCC 59.830 55.000 3.79 0.00 30.80 3.13
4545 4840 0.878416 CCAAAGCGGTCGATTTTCCA 59.122 50.000 3.79 0.00 30.80 3.53
4546 4841 1.268352 CCAAAGCGGTCGATTTTCCAA 59.732 47.619 3.79 0.00 30.80 3.53
4547 4842 2.287909 CCAAAGCGGTCGATTTTCCAAA 60.288 45.455 3.79 0.00 30.80 3.28
4548 4843 2.979813 CAAAGCGGTCGATTTTCCAAAG 59.020 45.455 3.79 0.00 30.80 2.77
4549 4844 0.521735 AGCGGTCGATTTTCCAAAGC 59.478 50.000 0.00 0.00 0.00 3.51
4550 4845 0.793104 GCGGTCGATTTTCCAAAGCG 60.793 55.000 0.54 0.54 0.00 4.68
4551 4846 0.179200 CGGTCGATTTTCCAAAGCGG 60.179 55.000 7.00 0.00 0.00 5.52
4552 4847 1.161843 GGTCGATTTTCCAAAGCGGA 58.838 50.000 7.00 0.00 44.40 5.54
4559 4854 3.009115 TCCAAAGCGGAGGGGGAG 61.009 66.667 0.00 0.00 39.64 4.30
4560 4855 4.803908 CCAAAGCGGAGGGGGAGC 62.804 72.222 0.00 0.00 36.56 4.70
4567 4862 3.717294 GGAGGGGGAGCGCTTTGA 61.717 66.667 13.26 0.00 0.00 2.69
4568 4863 2.436824 GAGGGGGAGCGCTTTGAC 60.437 66.667 13.26 2.82 0.00 3.18
4569 4864 4.394712 AGGGGGAGCGCTTTGACG 62.395 66.667 13.26 0.00 0.00 4.35
4605 4900 3.459063 GTCGCCTTAGGGACGCCT 61.459 66.667 0.00 0.00 44.82 5.52
4606 4901 2.682494 TCGCCTTAGGGACGCCTT 60.682 61.111 0.00 0.00 34.09 4.35
4607 4902 2.267961 CGCCTTAGGGACGCCTTT 59.732 61.111 0.00 0.00 33.58 3.11
4608 4903 0.971959 TCGCCTTAGGGACGCCTTTA 60.972 55.000 0.00 0.00 34.09 1.85
4609 4904 0.108041 CGCCTTAGGGACGCCTTTAA 60.108 55.000 0.00 0.00 33.58 1.52
4610 4905 1.676615 CGCCTTAGGGACGCCTTTAAA 60.677 52.381 0.00 0.00 33.58 1.52
4611 4906 2.439409 GCCTTAGGGACGCCTTTAAAA 58.561 47.619 0.00 0.00 33.58 1.52
4612 4907 2.163010 GCCTTAGGGACGCCTTTAAAAC 59.837 50.000 0.00 0.00 33.58 2.43
4613 4908 3.414269 CCTTAGGGACGCCTTTAAAACA 58.586 45.455 0.00 0.00 33.58 2.83
4614 4909 4.014406 CCTTAGGGACGCCTTTAAAACAT 58.986 43.478 0.00 0.00 33.58 2.71
4615 4910 5.187687 CCTTAGGGACGCCTTTAAAACATA 58.812 41.667 0.00 0.00 33.58 2.29
4616 4911 5.296035 CCTTAGGGACGCCTTTAAAACATAG 59.704 44.000 0.00 0.00 33.58 2.23
4617 4912 3.014623 AGGGACGCCTTTAAAACATAGC 58.985 45.455 0.00 0.00 0.00 2.97
4618 4913 3.014623 GGGACGCCTTTAAAACATAGCT 58.985 45.455 0.00 0.00 0.00 3.32
4619 4914 3.442625 GGGACGCCTTTAAAACATAGCTT 59.557 43.478 0.00 0.00 0.00 3.74
4620 4915 4.637091 GGGACGCCTTTAAAACATAGCTTA 59.363 41.667 0.00 0.00 0.00 3.09
4621 4916 5.124297 GGGACGCCTTTAAAACATAGCTTAA 59.876 40.000 0.00 0.00 0.00 1.85
4622 4917 6.025896 GGACGCCTTTAAAACATAGCTTAAC 58.974 40.000 0.00 0.00 0.00 2.01
4623 4918 6.128090 GGACGCCTTTAAAACATAGCTTAACT 60.128 38.462 0.00 0.00 0.00 2.24
4624 4919 6.608610 ACGCCTTTAAAACATAGCTTAACTG 58.391 36.000 0.00 0.00 0.00 3.16
4712 5014 4.974645 TTCAGAGGTGGTTACATGACTT 57.025 40.909 0.00 0.00 0.00 3.01
4821 5123 5.003872 CAGATACGTCTCAATGTTTCTCACG 59.996 44.000 3.60 0.00 32.41 4.35
5138 5440 9.135843 GCCTATTTAACATTTTGTTAGTCAACC 57.864 33.333 0.91 0.00 42.93 3.77
5158 5460 6.318648 TCAACCTATTACTGCTTTTATGGCTG 59.681 38.462 0.00 0.00 35.32 4.85
5205 5507 8.970691 AACAATTTGAGTGCAATATAGTTCAC 57.029 30.769 2.79 0.00 33.25 3.18
5374 5677 6.939730 TCAGATTGAAGTTACACCTTGCATAA 59.060 34.615 0.00 0.00 0.00 1.90
5490 5793 5.045213 TGGCACCTGTTCCTATTTTCTGATA 60.045 40.000 0.00 0.00 0.00 2.15
5767 6070 1.853963 TCTTGACTGGAGTAGGCCTC 58.146 55.000 9.68 0.21 39.67 4.70
5859 6162 3.601443 AGATACATGGCGCTATCCTTC 57.399 47.619 7.64 2.74 0.00 3.46
6042 6347 3.897325 TCGGCGACAGTACAATATCATC 58.103 45.455 4.99 0.00 0.00 2.92
6204 7412 4.644685 CCCAGTTCCATGTGTTAAATAGGG 59.355 45.833 0.00 0.00 0.00 3.53
6386 7595 5.830912 TGGTTGATACTGACTTTGCTTTTG 58.169 37.500 0.00 0.00 0.00 2.44
6460 7669 4.929819 TCATTGGATGGATTCTGCAATG 57.070 40.909 11.53 11.53 36.29 2.82
6827 8040 6.306987 ACCTTGGTTGTGATGACTTCTATTT 58.693 36.000 0.00 0.00 0.00 1.40
6839 8052 9.942850 TGATGACTTCTATTTAATCAACACTCA 57.057 29.630 0.00 0.00 0.00 3.41
6942 8155 1.249407 GACTTGAGAGACACCGACCT 58.751 55.000 0.00 0.00 0.00 3.85
6945 8158 0.596577 TTGAGAGACACCGACCTTCG 59.403 55.000 0.00 0.00 40.07 3.79
7048 8262 9.042450 CCCCCTTATTTTTCTTATTGGTAAGTT 57.958 33.333 0.00 0.00 38.72 2.66
7064 8278 5.121611 TGGTAAGTTGTTTATGCTGTCATCG 59.878 40.000 0.00 0.00 34.22 3.84
7333 8571 0.527113 TGGCAATTTCGGTCATGCAG 59.473 50.000 0.00 0.00 40.51 4.41
7348 8586 2.656947 TGCAGGAACTAAACTTGCCT 57.343 45.000 0.00 0.00 39.11 4.75
7349 8587 2.944129 TGCAGGAACTAAACTTGCCTT 58.056 42.857 0.00 0.00 39.11 4.35
7351 8589 2.884639 GCAGGAACTAAACTTGCCTTCA 59.115 45.455 0.00 0.00 36.02 3.02
7356 8594 6.986231 CAGGAACTAAACTTGCCTTCAAAAAT 59.014 34.615 0.00 0.00 36.02 1.82
7474 8712 7.759607 AGCAATAGGAACCCACATAGAAATAT 58.240 34.615 0.00 0.00 0.00 1.28
7527 8765 4.754322 ACACAACCATCCAAACAAACTTC 58.246 39.130 0.00 0.00 0.00 3.01
7554 8801 0.752658 TGGTGATGAGGCGAGTATGG 59.247 55.000 0.00 0.00 0.00 2.74
7651 8901 6.459066 GCTCAGCTAGGATATGTTGATGTAA 58.541 40.000 0.00 0.00 0.00 2.41
7679 8930 3.065095 GCAAAAACCATGTTGTGCACATT 59.935 39.130 22.39 7.92 44.40 2.71
7803 9107 5.355071 CACCACACTTCACAGCAACATATAT 59.645 40.000 0.00 0.00 0.00 0.86
7905 9209 0.395586 GCCCCCTGCACAACATCATA 60.396 55.000 0.00 0.00 40.77 2.15
7966 9271 6.378710 TTGACATACAAGAGGACTAGATCG 57.621 41.667 0.00 0.00 34.20 3.69
7979 9284 0.459899 TAGATCGTGCGAGCCATGTT 59.540 50.000 6.22 0.00 0.00 2.71
7980 9285 1.086067 AGATCGTGCGAGCCATGTTG 61.086 55.000 6.22 0.00 0.00 3.33
8026 9331 0.321653 GTGCCGACAAAGGATGGAGT 60.322 55.000 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.614415 AAAATGCCCGGCTTGATCCA 60.614 50.000 11.61 0.00 0.00 3.41
56 58 1.006998 TGGCAGCCCCAAAATCTATGT 59.993 47.619 9.64 0.00 41.82 2.29
107 109 1.999634 AAACCAGCCTGACCTGTGCT 62.000 55.000 0.00 0.00 35.25 4.40
117 119 0.178961 GGTTCCTCCAAAACCAGCCT 60.179 55.000 0.26 0.00 44.61 4.58
157 159 1.233285 CCAAGATGCTATGGCTCGCC 61.233 60.000 1.68 0.00 39.59 5.54
165 167 4.444022 CCAGTCAAGTAGCCAAGATGCTAT 60.444 45.833 0.00 0.00 45.03 2.97
269 285 1.375523 GTGTGATCCTTCGCCCGTT 60.376 57.895 0.00 0.00 0.00 4.44
283 299 2.227626 TGTTATTTCATGTGGCGGTGTG 59.772 45.455 0.00 0.00 0.00 3.82
319 336 2.094286 GTGAGATGGTCTCCACTCTGTG 60.094 54.545 4.65 0.00 42.73 3.66
320 337 2.175202 GTGAGATGGTCTCCACTCTGT 58.825 52.381 4.65 0.00 42.73 3.41
382 405 4.778143 GCAGCCGGTGGTACCCAG 62.778 72.222 10.07 1.46 33.75 4.45
517 540 1.004161 TCAGGATCGGCAATGTTTGGA 59.996 47.619 0.00 0.00 0.00 3.53
529 552 1.759445 ACCTCAACCATCTCAGGATCG 59.241 52.381 0.00 0.00 0.00 3.69
706 729 0.755698 TGGACTCCTCCATAGACCGC 60.756 60.000 0.00 0.00 42.15 5.68
779 802 2.592778 TCTCTTCTCCCCTACCCCTAA 58.407 52.381 0.00 0.00 0.00 2.69
813 844 6.875972 ACATCTAAGATAAAGTCTGGTGGT 57.124 37.500 0.00 0.00 37.23 4.16
857 888 4.857509 TGCCGCTTTATTTAACCAAAGT 57.142 36.364 8.86 0.00 34.82 2.66
953 990 5.794687 AAGCGTTTTGAAAAGAAAAAGGG 57.205 34.783 0.00 0.00 34.54 3.95
954 991 7.064134 AGGTAAAGCGTTTTGAAAAGAAAAAGG 59.936 33.333 7.57 0.00 36.15 3.11
1189 1227 1.614241 GCGGGGAGGAAGCAACTAGA 61.614 60.000 0.00 0.00 0.00 2.43
1193 1231 2.747855 CTGCGGGGAGGAAGCAAC 60.748 66.667 0.00 0.00 40.63 4.17
1633 1680 8.546083 ACCACAGATCTATTTCTCTAGAACAT 57.454 34.615 0.00 0.00 33.13 2.71
1662 1709 1.910722 CTAGGCACTGGTCTGGCAT 59.089 57.895 0.00 0.00 41.52 4.40
1748 1801 3.118531 ACTAATCTCCATGTCCAGGCTT 58.881 45.455 0.00 0.00 0.00 4.35
2341 2441 0.110644 GAAGAAACAAGAGTGCGGCG 60.111 55.000 0.51 0.51 0.00 6.46
2454 2714 2.630098 TGATGCCTAGAGTACCTGATGC 59.370 50.000 0.00 0.00 0.00 3.91
2495 2755 5.452078 TTGCAGGAAATTGAGGTGTTTAG 57.548 39.130 0.00 0.00 0.00 1.85
2501 2761 2.629617 CTGGTTTGCAGGAAATTGAGGT 59.370 45.455 0.00 0.00 0.00 3.85
3297 3571 7.305474 ACTGAGCCTACAAAATTTCAAATACG 58.695 34.615 0.00 0.00 0.00 3.06
3671 3952 1.202336 GGAACACGGTAGATGTACCCG 60.202 57.143 13.20 10.60 45.61 5.28
3686 3967 5.649970 TTACACCTAAAAGGAAGGGAACA 57.350 39.130 0.00 0.00 37.67 3.18
3853 4134 7.920160 TTCAAAATTTGGAAATATGCCCTTC 57.080 32.000 5.49 0.00 0.00 3.46
3891 4172 5.818857 GGACCCAAAAATGTATAGCTACGAA 59.181 40.000 0.00 0.00 0.00 3.85
3898 4179 5.943416 TGACTGTGGACCCAAAAATGTATAG 59.057 40.000 0.00 0.00 0.00 1.31
3941 4222 6.194796 TGTATGCAGCTTCCTTTAAACATC 57.805 37.500 0.00 0.00 0.00 3.06
3948 4229 4.588899 TGTACATGTATGCAGCTTCCTTT 58.411 39.130 9.18 0.00 0.00 3.11
4089 4384 4.821805 TCAAGATGAGGTCAAAAGAACACC 59.178 41.667 0.00 0.00 0.00 4.16
4134 4429 7.229106 AGCAACAATTTTATTCCAAAATGCACT 59.771 29.630 0.00 0.00 30.94 4.40
4387 4682 6.468972 AGGATAATGCAGGGGTTAATATGT 57.531 37.500 0.00 0.00 0.00 2.29
4402 4697 6.377327 AGTGATTTGGCGTTAAGGATAATG 57.623 37.500 0.00 0.00 0.00 1.90
4432 4727 3.047613 GGCGTCGCCTTAAAAACATAG 57.952 47.619 28.98 0.00 46.69 2.23
4451 4746 1.408453 CCCTCCCTAAGGCGGTAAGG 61.408 65.000 0.00 0.00 44.71 2.69
4452 4747 1.408453 CCCCTCCCTAAGGCGGTAAG 61.408 65.000 0.00 0.00 44.71 2.34
4453 4748 1.383525 CCCCTCCCTAAGGCGGTAA 60.384 63.158 0.00 0.00 44.71 2.85
4454 4749 2.284493 CCCCTCCCTAAGGCGGTA 59.716 66.667 0.00 0.00 44.71 4.02
4455 4750 4.817909 CCCCCTCCCTAAGGCGGT 62.818 72.222 0.00 0.00 44.71 5.68
4497 4792 4.467084 TCCAAAGCGCCCGCCTAG 62.467 66.667 2.29 0.00 43.17 3.02
4498 4793 4.770874 GTCCAAAGCGCCCGCCTA 62.771 66.667 2.29 0.00 43.17 3.93
4506 4801 3.195698 GCCTAGGCGTCCAAAGCG 61.196 66.667 20.16 0.00 35.00 4.68
4524 4819 0.456142 GAAAATCGACCGCTTTGGGC 60.456 55.000 0.00 0.00 45.45 5.36
4525 4820 0.170339 GGAAAATCGACCGCTTTGGG 59.830 55.000 0.00 0.00 44.64 4.12
4526 4821 0.878416 TGGAAAATCGACCGCTTTGG 59.122 50.000 0.00 0.00 46.41 3.28
4527 4822 2.697431 TTGGAAAATCGACCGCTTTG 57.303 45.000 0.00 0.00 0.00 2.77
4528 4823 2.607038 GCTTTGGAAAATCGACCGCTTT 60.607 45.455 0.00 0.00 0.00 3.51
4529 4824 1.068541 GCTTTGGAAAATCGACCGCTT 60.069 47.619 0.00 0.00 0.00 4.68
4530 4825 0.521735 GCTTTGGAAAATCGACCGCT 59.478 50.000 0.00 0.00 0.00 5.52
4531 4826 0.793104 CGCTTTGGAAAATCGACCGC 60.793 55.000 0.00 0.00 0.00 5.68
4532 4827 0.179200 CCGCTTTGGAAAATCGACCG 60.179 55.000 0.00 0.00 42.00 4.79
4533 4828 1.161843 TCCGCTTTGGAAAATCGACC 58.838 50.000 0.00 0.00 46.38 4.79
4543 4838 4.803908 GCTCCCCCTCCGCTTTGG 62.804 72.222 0.00 0.00 40.09 3.28
4550 4845 3.717294 TCAAAGCGCTCCCCCTCC 61.717 66.667 12.06 0.00 0.00 4.30
4551 4846 2.436824 GTCAAAGCGCTCCCCCTC 60.437 66.667 12.06 0.00 0.00 4.30
4552 4847 4.394712 CGTCAAAGCGCTCCCCCT 62.395 66.667 12.06 0.00 0.00 4.79
4588 4883 2.517484 AAAGGCGTCCCTAAGGCGAC 62.517 60.000 0.00 0.00 41.90 5.19
4589 4884 0.971959 TAAAGGCGTCCCTAAGGCGA 60.972 55.000 0.00 0.00 41.90 5.54
4590 4885 0.108041 TTAAAGGCGTCCCTAAGGCG 60.108 55.000 0.00 0.00 41.90 5.52
4591 4886 2.118313 TTTAAAGGCGTCCCTAAGGC 57.882 50.000 0.00 0.00 41.90 4.35
4592 4887 3.414269 TGTTTTAAAGGCGTCCCTAAGG 58.586 45.455 0.00 0.00 41.90 2.69
4593 4888 5.220796 GCTATGTTTTAAAGGCGTCCCTAAG 60.221 44.000 0.00 0.00 41.90 2.18
4594 4889 4.637091 GCTATGTTTTAAAGGCGTCCCTAA 59.363 41.667 0.00 0.00 41.90 2.69
4595 4890 4.080751 AGCTATGTTTTAAAGGCGTCCCTA 60.081 41.667 0.00 0.00 41.90 3.53
4596 4891 3.014623 GCTATGTTTTAAAGGCGTCCCT 58.985 45.455 0.00 0.00 45.77 4.20
4597 4892 3.014623 AGCTATGTTTTAAAGGCGTCCC 58.985 45.455 0.00 0.00 0.00 4.46
4598 4893 4.696899 AAGCTATGTTTTAAAGGCGTCC 57.303 40.909 0.00 0.00 0.00 4.79
4599 4894 6.741358 CAGTTAAGCTATGTTTTAAAGGCGTC 59.259 38.462 0.00 0.00 0.00 5.19
4600 4895 6.206048 ACAGTTAAGCTATGTTTTAAAGGCGT 59.794 34.615 0.00 0.00 0.00 5.68
4601 4896 6.523201 CACAGTTAAGCTATGTTTTAAAGGCG 59.477 38.462 0.00 0.00 0.00 5.52
4602 4897 7.368059 ACACAGTTAAGCTATGTTTTAAAGGC 58.632 34.615 0.00 0.00 28.99 4.35
4607 4902 9.713713 TGACATACACAGTTAAGCTATGTTTTA 57.286 29.630 0.00 0.00 36.14 1.52
4608 4903 8.615878 TGACATACACAGTTAAGCTATGTTTT 57.384 30.769 0.00 0.00 36.14 2.43
4609 4904 8.792830 ATGACATACACAGTTAAGCTATGTTT 57.207 30.769 0.00 0.00 36.14 2.83
4610 4905 8.792830 AATGACATACACAGTTAAGCTATGTT 57.207 30.769 0.00 0.00 36.14 2.71
4611 4906 8.792830 AAATGACATACACAGTTAAGCTATGT 57.207 30.769 0.00 0.00 38.56 2.29
4712 5014 1.457380 TACACCCCCTCTTCCTCCCA 61.457 60.000 0.00 0.00 0.00 4.37
4783 5085 2.359900 GTATCTGAGCCAAAGGGTGTG 58.640 52.381 0.00 0.00 36.17 3.82
5031 5333 5.336213 GGTGCAGAACAACAATTGATCTCAT 60.336 40.000 13.59 0.00 40.31 2.90
5127 5429 9.953565 ATAAAAGCAGTAATAGGTTGACTAACA 57.046 29.630 0.00 0.00 38.58 2.41
5231 5533 4.202141 GCATTTGCTAGCATTATTGGTCCA 60.202 41.667 20.13 0.00 38.21 4.02
5301 5604 2.839486 AGAACAATTCTCGTGCTCCA 57.161 45.000 0.00 0.00 34.07 3.86
5374 5677 7.954666 TTATATTTGCTGTTCTTAAAGCCCT 57.045 32.000 0.00 0.00 38.71 5.19
5490 5793 9.028284 ACATGTGAAAAGAGGAAAATACATGAT 57.972 29.630 17.65 3.28 44.02 2.45
5543 5846 5.829924 CCAGACCTATGCCAATTTCTACATT 59.170 40.000 0.00 0.00 0.00 2.71
6042 6347 7.913674 AAGGACAAGACTAATAAAGAGCAAG 57.086 36.000 0.00 0.00 0.00 4.01
6386 7595 1.520600 CCCCGTAACCACTGCCAAAC 61.521 60.000 0.00 0.00 0.00 2.93
6703 7913 8.976353 ACTGACAATTTAACATTGGGCAATATA 58.024 29.630 12.13 0.00 33.56 0.86
6942 8155 1.140161 CGGCATAACGAGGGACGAA 59.860 57.895 0.00 0.00 45.77 3.85
6945 8158 0.108520 TTGACGGCATAACGAGGGAC 60.109 55.000 0.00 0.00 37.61 4.46
6976 8189 3.199880 AGACCCAATAGTATGCTGTGC 57.800 47.619 0.00 0.00 0.00 4.57
6977 8190 4.333649 CACAAGACCCAATAGTATGCTGTG 59.666 45.833 0.00 0.00 0.00 3.66
6978 8191 4.019321 ACACAAGACCCAATAGTATGCTGT 60.019 41.667 0.00 0.00 0.00 4.40
7048 8262 5.238432 ACAAAGAACGATGACAGCATAAACA 59.762 36.000 0.00 0.00 34.11 2.83
7176 8390 1.355381 CATGATAGCCCCCATTGCCTA 59.645 52.381 0.00 0.00 0.00 3.93
7187 8425 4.781934 AGGTTTAGTGTTCCATGATAGCC 58.218 43.478 0.00 0.00 0.00 3.93
7258 8496 7.926555 ACCTAACGGATGACACTTATATTTCAG 59.073 37.037 0.00 0.00 0.00 3.02
7275 8513 3.073378 TGCCATGCACCTAACGGA 58.927 55.556 0.00 0.00 31.71 4.69
7322 8560 2.301870 AGTTTAGTTCCTGCATGACCGA 59.698 45.455 0.00 0.00 0.00 4.69
7324 8562 3.366374 GCAAGTTTAGTTCCTGCATGACC 60.366 47.826 0.00 0.00 0.00 4.02
7329 8567 2.656947 AGGCAAGTTTAGTTCCTGCA 57.343 45.000 0.00 0.00 0.00 4.41
7333 8571 6.761242 ACATTTTTGAAGGCAAGTTTAGTTCC 59.239 34.615 0.00 0.00 35.04 3.62
7348 8586 7.920151 CACATGACAACTCCTAACATTTTTGAA 59.080 33.333 0.00 0.00 0.00 2.69
7349 8587 7.424803 CACATGACAACTCCTAACATTTTTGA 58.575 34.615 0.00 0.00 0.00 2.69
7351 8589 6.040842 AGCACATGACAACTCCTAACATTTTT 59.959 34.615 0.00 0.00 0.00 1.94
7356 8594 3.664107 GAGCACATGACAACTCCTAACA 58.336 45.455 0.00 0.00 0.00 2.41
7527 8765 1.315690 GCCTCATCACCATCACCATG 58.684 55.000 0.00 0.00 0.00 3.66
7554 8801 7.412063 ACACTTTCGACACAACCTAATAAAAC 58.588 34.615 0.00 0.00 0.00 2.43
7651 8901 4.511082 GCACAACATGGTTTTTGCTTGTAT 59.489 37.500 0.00 0.00 0.00 2.29
7679 8930 9.388346 CGCTAAAACATAACAAACTATCAAACA 57.612 29.630 0.00 0.00 0.00 2.83
7742 9044 0.514691 GGCGAGCAGAACAAGAACTG 59.485 55.000 0.00 0.00 37.22 3.16
7759 9063 1.603931 GCAAAGTGGCTTGAAAGAGGC 60.604 52.381 0.00 0.00 42.15 4.70
7803 9107 1.198867 GTGCGCATGTTTGGTATGTGA 59.801 47.619 15.91 0.00 38.07 3.58
7872 9176 2.062636 AGGGGGCTCTTGTTTAAGTGA 58.937 47.619 0.00 0.00 35.38 3.41
7905 9209 9.512588 CTGAATATTTGCTCAGGGAATAATACT 57.487 33.333 0.00 0.00 36.27 2.12
7946 9251 4.036971 GCACGATCTAGTCCTCTTGTATGT 59.963 45.833 0.00 0.00 0.00 2.29
7979 9284 2.646930 CCAAGCACATCTATCAAGGCA 58.353 47.619 0.00 0.00 0.00 4.75
7980 9285 1.336125 GCCAAGCACATCTATCAAGGC 59.664 52.381 0.00 0.00 0.00 4.35
8003 9308 1.675641 ATCCTTTGTCGGCACAGGC 60.676 57.895 17.50 0.00 41.22 4.85
8009 9314 2.280628 CTAACTCCATCCTTTGTCGGC 58.719 52.381 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.