Multiple sequence alignment - TraesCS6A01G214200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G214200 chr6A 100.000 4130 0 0 1 4130 391250682 391254811 0.000000e+00 7627.0
1 TraesCS6A01G214200 chr6A 89.916 119 10 2 3765 3882 607453930 607453813 7.150000e-33 152.0
2 TraesCS6A01G214200 chr6A 98.684 76 1 0 3139 3214 391253756 391253831 7.200000e-28 135.0
3 TraesCS6A01G214200 chr6A 98.684 76 1 0 3075 3150 391253820 391253895 7.200000e-28 135.0
4 TraesCS6A01G214200 chr6A 100.000 46 0 0 4064 4109 391254700 391254745 7.360000e-13 86.1
5 TraesCS6A01G214200 chr6A 100.000 46 0 0 4019 4064 391254745 391254790 7.360000e-13 86.1
6 TraesCS6A01G214200 chr6B 97.828 1842 22 2 1309 3150 435582052 435583875 0.000000e+00 3164.0
7 TraesCS6A01G214200 chr6B 97.024 504 5 1 811 1314 435581336 435581829 0.000000e+00 839.0
8 TraesCS6A01G214200 chr6B 90.316 475 43 3 346 818 435579788 435580261 1.630000e-173 619.0
9 TraesCS6A01G214200 chr6B 88.068 352 17 8 3379 3729 435584181 435584508 1.080000e-105 394.0
10 TraesCS6A01G214200 chr6B 94.372 231 12 1 3728 3958 435584564 435584793 1.830000e-93 353.0
11 TraesCS6A01G214200 chr6B 89.344 244 4 1 3139 3382 435583800 435584021 1.880000e-73 287.0
12 TraesCS6A01G214200 chr6B 94.118 68 3 1 4064 4130 435584812 435584879 7.300000e-18 102.0
13 TraesCS6A01G214200 chr6B 93.939 66 3 1 4000 4064 435584793 435584858 9.450000e-17 99.0
14 TraesCS6A01G214200 chr6D 95.566 1962 37 8 1216 3150 273827602 273829540 0.000000e+00 3096.0
15 TraesCS6A01G214200 chr6D 91.323 945 37 17 3139 4063 273829465 273830384 0.000000e+00 1249.0
16 TraesCS6A01G214200 chr6D 95.531 537 11 8 709 1232 273827048 273827584 0.000000e+00 846.0
17 TraesCS6A01G214200 chr6D 91.433 607 40 6 35 639 273826453 273827049 0.000000e+00 822.0
18 TraesCS6A01G214200 chr6D 77.483 302 60 7 388 683 20134761 20135060 1.530000e-39 174.0
19 TraesCS6A01G214200 chr6D 95.652 46 1 1 4064 4108 273830339 273830384 5.730000e-09 73.1
20 TraesCS6A01G214200 chr5B 79.032 248 48 4 3643 3889 406538172 406537928 2.550000e-37 167.0
21 TraesCS6A01G214200 chr5B 88.710 124 12 2 3765 3887 537966263 537966141 2.570000e-32 150.0
22 TraesCS6A01G214200 chr5D 90.323 124 10 2 3765 3887 441929191 441929069 1.190000e-35 161.0
23 TraesCS6A01G214200 chr1A 89.683 126 10 3 3765 3889 555641228 555641105 1.540000e-34 158.0
24 TraesCS6A01G214200 chr2A 75.758 330 67 12 388 708 766442308 766442633 1.990000e-33 154.0
25 TraesCS6A01G214200 chr5A 89.256 121 12 1 3765 3884 691663198 691663318 2.570000e-32 150.0
26 TraesCS6A01G214200 chr4D 89.076 119 13 0 3771 3889 41217564 41217682 9.250000e-32 148.0
27 TraesCS6A01G214200 chr3A 79.695 197 30 9 470 659 717293753 717293560 2.590000e-27 134.0
28 TraesCS6A01G214200 chr2D 75.153 326 52 24 330 633 164743261 164742943 4.330000e-25 126.0
29 TraesCS6A01G214200 chr7B 74.766 214 40 12 471 676 451046307 451046100 2.650000e-12 84.2
30 TraesCS6A01G214200 chr3D 94.737 38 1 1 461 498 11412284 11412320 1.600000e-04 58.4
31 TraesCS6A01G214200 chr1B 89.362 47 3 1 3707 3753 171125277 171125321 1.600000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G214200 chr6A 391250682 391254811 4129 False 1613.840 7627 99.473600 1 4130 5 chr6A.!!$F1 4129
1 TraesCS6A01G214200 chr6B 435579788 435584879 5091 False 732.125 3164 93.126125 346 4130 8 chr6B.!!$F1 3784
2 TraesCS6A01G214200 chr6D 273826453 273830384 3931 False 1217.220 3096 93.901000 35 4108 5 chr6D.!!$F2 4073

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
312 313 0.042731 TCTCCCACTTTCGATCCCCT 59.957 55.000 0.0 0.0 0.00 4.79 F
314 315 1.282157 CTCCCACTTTCGATCCCCTTT 59.718 52.381 0.0 0.0 0.00 3.11 F
2301 3692 1.405821 CCGGAGTTAGTGCTCTACCTG 59.594 57.143 0.0 0.0 35.89 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2301 3692 1.072806 TGATCCATGCCATAGTCCAGC 59.927 52.381 0.0 0.0 0.00 4.85 R
2310 3701 1.810455 TCTCCTCATGATCCATGCCA 58.190 50.000 0.0 0.0 41.18 4.92 R
4092 5726 0.039256 CGTTGGCTGGGAACAATGTG 60.039 55.000 0.0 0.0 42.06 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.620877 TGAGCCCCAATTTATATAGACGAT 57.379 37.500 0.00 0.00 0.00 3.73
24 25 6.406370 TGAGCCCCAATTTATATAGACGATG 58.594 40.000 0.00 0.00 0.00 3.84
25 26 6.212589 TGAGCCCCAATTTATATAGACGATGA 59.787 38.462 0.00 0.00 0.00 2.92
26 27 6.644347 AGCCCCAATTTATATAGACGATGAG 58.356 40.000 0.00 0.00 0.00 2.90
27 28 5.817816 GCCCCAATTTATATAGACGATGAGG 59.182 44.000 0.00 0.00 0.00 3.86
28 29 6.349300 CCCCAATTTATATAGACGATGAGGG 58.651 44.000 0.00 0.00 0.00 4.30
29 30 5.817816 CCCAATTTATATAGACGATGAGGGC 59.182 44.000 0.00 0.00 0.00 5.19
30 31 6.352222 CCCAATTTATATAGACGATGAGGGCT 60.352 42.308 0.00 0.00 0.00 5.19
31 32 7.147724 CCCAATTTATATAGACGATGAGGGCTA 60.148 40.741 0.00 0.00 0.00 3.93
32 33 7.923344 CCAATTTATATAGACGATGAGGGCTAG 59.077 40.741 0.00 0.00 0.00 3.42
33 34 7.589958 ATTTATATAGACGATGAGGGCTAGG 57.410 40.000 0.00 0.00 0.00 3.02
48 49 2.651455 GCTAGGGTTTACATGGGGTTC 58.349 52.381 0.00 0.00 0.00 3.62
64 65 1.986378 GGTTCGATCGATCTTATGCCG 59.014 52.381 20.18 8.81 0.00 5.69
127 128 2.369394 CTGCCCTTTACATTGGACCTC 58.631 52.381 0.00 0.00 0.00 3.85
133 134 2.672961 TTACATTGGACCTCTGCGAG 57.327 50.000 0.00 0.00 0.00 5.03
135 136 0.247736 ACATTGGACCTCTGCGAGAC 59.752 55.000 7.07 2.12 0.00 3.36
142 143 4.504916 CTCTGCGAGACGGGCCTG 62.505 72.222 11.02 11.02 0.00 4.85
200 201 3.770040 CACCGTCATCGCCCCTCA 61.770 66.667 0.00 0.00 35.54 3.86
235 236 4.666512 ACCCTGCTATCATTCTTGTTTGT 58.333 39.130 0.00 0.00 0.00 2.83
249 250 1.957186 TTTGTTTCGGCGTCTCGGG 60.957 57.895 6.85 0.00 0.00 5.14
251 252 1.804396 TTGTTTCGGCGTCTCGGGTA 61.804 55.000 6.85 0.00 0.00 3.69
303 304 3.884037 AGGAACAATGTCTCCCACTTT 57.116 42.857 9.78 0.00 31.50 2.66
312 313 0.042731 TCTCCCACTTTCGATCCCCT 59.957 55.000 0.00 0.00 0.00 4.79
314 315 1.282157 CTCCCACTTTCGATCCCCTTT 59.718 52.381 0.00 0.00 0.00 3.11
344 345 2.287308 GCATCTAGCGTCGTCAGAGAAT 60.287 50.000 0.00 0.00 0.00 2.40
377 378 1.939785 CTTCGTCGAATCTCGCGGG 60.940 63.158 8.36 1.01 40.21 6.13
413 414 5.786264 GATCTGTTAGGATCCGGTCTTTA 57.214 43.478 5.98 0.00 36.91 1.85
426 427 2.850647 CGGTCTTTATTCGTCTTCGGTC 59.149 50.000 0.00 0.00 37.69 4.79
427 428 3.671433 CGGTCTTTATTCGTCTTCGGTCA 60.671 47.826 0.00 0.00 37.69 4.02
428 429 4.430908 GGTCTTTATTCGTCTTCGGTCAT 58.569 43.478 0.00 0.00 37.69 3.06
429 430 5.585390 GGTCTTTATTCGTCTTCGGTCATA 58.415 41.667 0.00 0.00 37.69 2.15
430 431 6.214399 GGTCTTTATTCGTCTTCGGTCATAT 58.786 40.000 0.00 0.00 37.69 1.78
431 432 6.144080 GGTCTTTATTCGTCTTCGGTCATATG 59.856 42.308 0.00 0.00 37.69 1.78
432 433 6.696148 GTCTTTATTCGTCTTCGGTCATATGT 59.304 38.462 1.90 0.00 37.69 2.29
433 434 6.916387 TCTTTATTCGTCTTCGGTCATATGTC 59.084 38.462 1.90 0.00 37.69 3.06
434 435 4.920640 ATTCGTCTTCGGTCATATGTCT 57.079 40.909 1.90 0.00 37.69 3.41
435 436 7.500720 TTATTCGTCTTCGGTCATATGTCTA 57.499 36.000 1.90 0.00 37.69 2.59
506 517 1.480789 TCTGGTGCGCTGACCTATTA 58.519 50.000 16.94 0.00 36.88 0.98
528 539 8.773033 ATTAAGGCTTTAACATGATGATTCCT 57.227 30.769 4.45 0.00 31.90 3.36
556 567 4.339872 TCTACTAACAAGTTTTGCCCGA 57.660 40.909 0.00 0.00 0.00 5.14
626 639 3.662247 ACTTGTAGTTGTCGCTAGCTT 57.338 42.857 13.93 0.00 0.00 3.74
650 663 7.118496 TGTCCACAAACCTGATTGTATTTTT 57.882 32.000 0.00 0.00 41.44 1.94
688 701 6.944557 TTCTTTGTACTGTCATGACATACG 57.055 37.500 28.00 18.83 41.01 3.06
690 703 6.863275 TCTTTGTACTGTCATGACATACGAT 58.137 36.000 28.00 13.83 41.01 3.73
691 704 6.751888 TCTTTGTACTGTCATGACATACGATG 59.248 38.462 28.00 25.43 41.01 3.84
693 706 6.391227 TGTACTGTCATGACATACGATGAT 57.609 37.500 28.00 9.43 41.01 2.45
700 713 8.391075 TGTCATGACATACGATGATTAGACTA 57.609 34.615 24.56 0.00 36.21 2.59
780 794 5.998981 TCACTTTCGTAATGTACAATTGGGT 59.001 36.000 10.83 0.00 0.00 4.51
949 2046 4.223923 CACCTCCTGTTACTCTTCCTTCAT 59.776 45.833 0.00 0.00 0.00 2.57
1380 2767 3.833442 TGTGCGGCATCGTCTATAATAG 58.167 45.455 5.72 0.00 38.89 1.73
1381 2768 3.254903 TGTGCGGCATCGTCTATAATAGT 59.745 43.478 5.72 0.00 38.89 2.12
1382 2769 4.456566 TGTGCGGCATCGTCTATAATAGTA 59.543 41.667 5.72 0.00 38.89 1.82
1996 3387 4.637276 TGAAGGTTCGCATCTTGAAGTTA 58.363 39.130 0.00 0.00 0.00 2.24
2040 3431 7.978982 CCTTATAGGTTCTGAACATTTCACAG 58.021 38.462 21.01 8.19 35.46 3.66
2142 3533 4.675063 AGAACATGGGGATAGTTTGGTT 57.325 40.909 0.00 0.00 0.00 3.67
2301 3692 1.405821 CCGGAGTTAGTGCTCTACCTG 59.594 57.143 0.00 0.00 35.89 4.00
2310 3701 2.035632 GTGCTCTACCTGCTGGACTAT 58.964 52.381 17.64 0.00 37.04 2.12
2539 3930 6.968263 TGGAGAATATTGGTGTCAACAAAA 57.032 33.333 7.53 0.00 35.48 2.44
2814 4205 3.008375 ACATAGAGTCAAAGCTGAAGCCA 59.992 43.478 0.00 0.00 43.38 4.75
2979 4370 5.556915 AGGTATGAACTCGTGAAATTTCCA 58.443 37.500 15.48 4.79 0.00 3.53
3029 4420 3.709653 AGGATAAAACCTCGGTATGCTCA 59.290 43.478 0.00 0.00 34.98 4.26
3138 4529 7.756395 ATCAGGTGGATTTTGATATGATCAC 57.244 36.000 0.00 0.00 33.57 3.06
3139 4530 6.661777 TCAGGTGGATTTTGATATGATCACA 58.338 36.000 0.00 0.00 39.39 3.58
3140 4531 7.118060 TCAGGTGGATTTTGATATGATCACAA 58.882 34.615 0.00 0.00 39.39 3.33
3141 4532 7.781219 TCAGGTGGATTTTGATATGATCACAAT 59.219 33.333 0.00 0.00 41.08 2.71
3151 4542 8.442632 TTGATATGATCACAATCTCAGAAACC 57.557 34.615 16.76 0.00 39.39 3.27
3152 4543 7.567458 TGATATGATCACAATCTCAGAAACCA 58.433 34.615 16.76 0.00 33.59 3.67
3153 4544 7.713942 TGATATGATCACAATCTCAGAAACCAG 59.286 37.037 16.76 0.00 33.59 4.00
3154 4545 5.488262 TGATCACAATCTCAGAAACCAGA 57.512 39.130 0.00 0.00 32.75 3.86
3155 4546 6.058553 TGATCACAATCTCAGAAACCAGAT 57.941 37.500 0.00 0.00 32.75 2.90
3156 4547 6.479006 TGATCACAATCTCAGAAACCAGATT 58.521 36.000 0.00 0.00 39.49 2.40
3157 4548 6.944290 TGATCACAATCTCAGAAACCAGATTT 59.056 34.615 0.00 0.00 37.27 2.17
3158 4549 6.564709 TCACAATCTCAGAAACCAGATTTG 57.435 37.500 0.00 0.00 37.27 2.32
3159 4550 6.298361 TCACAATCTCAGAAACCAGATTTGA 58.702 36.000 0.00 0.00 37.27 2.69
3160 4551 6.429078 TCACAATCTCAGAAACCAGATTTGAG 59.571 38.462 0.00 0.00 37.27 3.02
3161 4552 5.709164 ACAATCTCAGAAACCAGATTTGAGG 59.291 40.000 0.56 0.00 37.27 3.86
3162 4553 5.768980 ATCTCAGAAACCAGATTTGAGGA 57.231 39.130 0.56 0.00 0.00 3.71
3163 4554 5.567037 TCTCAGAAACCAGATTTGAGGAA 57.433 39.130 0.56 0.00 0.00 3.36
3164 4555 5.940617 TCTCAGAAACCAGATTTGAGGAAA 58.059 37.500 0.56 0.00 0.00 3.13
3165 4556 6.546484 TCTCAGAAACCAGATTTGAGGAAAT 58.454 36.000 0.56 0.00 34.29 2.17
3166 4557 7.006509 TCTCAGAAACCAGATTTGAGGAAATT 58.993 34.615 0.56 0.00 31.58 1.82
3167 4558 7.175641 TCTCAGAAACCAGATTTGAGGAAATTC 59.824 37.037 0.56 0.00 31.58 2.17
3168 4559 7.006509 TCAGAAACCAGATTTGAGGAAATTCT 58.993 34.615 0.00 0.00 31.58 2.40
3169 4560 8.163408 TCAGAAACCAGATTTGAGGAAATTCTA 58.837 33.333 0.00 0.00 31.58 2.10
3170 4561 8.239998 CAGAAACCAGATTTGAGGAAATTCTAC 58.760 37.037 0.00 0.00 31.58 2.59
3171 4562 7.944554 AGAAACCAGATTTGAGGAAATTCTACA 59.055 33.333 0.00 0.00 31.58 2.74
3172 4563 8.477419 AAACCAGATTTGAGGAAATTCTACAA 57.523 30.769 0.00 0.00 31.58 2.41
3173 4564 8.477419 AACCAGATTTGAGGAAATTCTACAAA 57.523 30.769 15.36 15.36 31.58 2.83
3174 4565 8.477419 ACCAGATTTGAGGAAATTCTACAAAA 57.523 30.769 16.32 4.93 34.86 2.44
3175 4566 8.579863 ACCAGATTTGAGGAAATTCTACAAAAG 58.420 33.333 16.32 11.61 34.86 2.27
3176 4567 8.796475 CCAGATTTGAGGAAATTCTACAAAAGA 58.204 33.333 16.32 2.26 34.86 2.52
3279 4670 4.058817 GCCTGGTAGATGGATAGTTTTCG 58.941 47.826 0.00 0.00 0.00 3.46
3354 4745 2.690778 GGCAGTTGATGGACGTGCC 61.691 63.158 4.04 0.00 46.49 5.01
3370 4761 1.298157 TGCCGCATTTGAGAGGAACG 61.298 55.000 0.00 0.00 0.00 3.95
3503 5066 3.770388 GCTAGTTTAGGTGACTTCCCTCT 59.230 47.826 0.00 0.00 43.67 3.69
3504 5067 4.223255 GCTAGTTTAGGTGACTTCCCTCTT 59.777 45.833 0.00 0.00 43.67 2.85
3505 5068 4.893829 AGTTTAGGTGACTTCCCTCTTC 57.106 45.455 0.00 0.00 43.67 2.87
3506 5069 4.494591 AGTTTAGGTGACTTCCCTCTTCT 58.505 43.478 0.00 0.00 43.67 2.85
3507 5070 4.908481 AGTTTAGGTGACTTCCCTCTTCTT 59.092 41.667 0.00 0.00 43.67 2.52
3508 5071 5.012251 AGTTTAGGTGACTTCCCTCTTCTTC 59.988 44.000 0.00 0.00 43.67 2.87
3509 5072 3.268034 AGGTGACTTCCCTCTTCTTCT 57.732 47.619 0.00 0.00 37.44 2.85
3510 5073 3.169908 AGGTGACTTCCCTCTTCTTCTC 58.830 50.000 0.00 0.00 37.44 2.87
3511 5074 3.169908 GGTGACTTCCCTCTTCTTCTCT 58.830 50.000 0.00 0.00 0.00 3.10
3512 5075 3.580895 GGTGACTTCCCTCTTCTTCTCTT 59.419 47.826 0.00 0.00 0.00 2.85
3513 5076 4.041075 GGTGACTTCCCTCTTCTTCTCTTT 59.959 45.833 0.00 0.00 0.00 2.52
3514 5077 5.455469 GGTGACTTCCCTCTTCTTCTCTTTT 60.455 44.000 0.00 0.00 0.00 2.27
3515 5078 6.058833 GTGACTTCCCTCTTCTTCTCTTTTT 58.941 40.000 0.00 0.00 0.00 1.94
3516 5079 6.017523 GTGACTTCCCTCTTCTTCTCTTTTTG 60.018 42.308 0.00 0.00 0.00 2.44
3517 5080 4.824537 ACTTCCCTCTTCTTCTCTTTTTGC 59.175 41.667 0.00 0.00 0.00 3.68
3518 5081 3.403038 TCCCTCTTCTTCTCTTTTTGCG 58.597 45.455 0.00 0.00 0.00 4.85
3519 5082 3.071023 TCCCTCTTCTTCTCTTTTTGCGA 59.929 43.478 0.00 0.00 0.00 5.10
3520 5083 3.434984 CCCTCTTCTTCTCTTTTTGCGAG 59.565 47.826 0.00 0.00 0.00 5.03
3521 5084 3.434984 CCTCTTCTTCTCTTTTTGCGAGG 59.565 47.826 0.00 0.00 0.00 4.63
3522 5085 3.403038 TCTTCTTCTCTTTTTGCGAGGG 58.597 45.455 0.00 0.00 0.00 4.30
3523 5086 2.930826 TCTTCTCTTTTTGCGAGGGT 57.069 45.000 0.00 0.00 0.00 4.34
3524 5087 4.039973 TCTTCTTCTCTTTTTGCGAGGGTA 59.960 41.667 0.00 0.00 0.00 3.69
3525 5088 3.926616 TCTTCTCTTTTTGCGAGGGTAG 58.073 45.455 0.00 0.00 0.00 3.18
3526 5089 3.576982 TCTTCTCTTTTTGCGAGGGTAGA 59.423 43.478 0.00 0.00 0.00 2.59
3527 5090 4.223032 TCTTCTCTTTTTGCGAGGGTAGAT 59.777 41.667 0.00 0.00 0.00 1.98
3528 5091 3.861840 TCTCTTTTTGCGAGGGTAGATG 58.138 45.455 0.00 0.00 0.00 2.90
3529 5092 2.352960 CTCTTTTTGCGAGGGTAGATGC 59.647 50.000 0.00 0.00 0.00 3.91
3530 5093 1.401905 CTTTTTGCGAGGGTAGATGCC 59.598 52.381 0.00 0.00 0.00 4.40
3531 5094 0.742990 TTTTGCGAGGGTAGATGCCG 60.743 55.000 0.00 0.00 0.00 5.69
3532 5095 1.895020 TTTGCGAGGGTAGATGCCGT 61.895 55.000 0.00 0.00 0.00 5.68
3533 5096 1.038681 TTGCGAGGGTAGATGCCGTA 61.039 55.000 0.00 0.00 0.00 4.02
3702 5266 9.207868 GCTCTACTCCTTCCTATCCATATTAAT 57.792 37.037 0.00 0.00 0.00 1.40
3721 5285 3.878086 ATTGACGCACACTTTGTACAG 57.122 42.857 0.00 0.00 0.00 2.74
3769 5390 0.834687 TGGGTCGGCAGGAGTAACTT 60.835 55.000 0.00 0.00 0.00 2.66
3924 5549 5.968528 TGTTGTGTGTGAGGTTAAAGTTT 57.031 34.783 0.00 0.00 0.00 2.66
4017 5651 7.348080 ACTTCCATGTATTGTAGATCTTCGA 57.652 36.000 0.00 0.00 0.00 3.71
4026 5660 7.710475 TGTATTGTAGATCTTCGAATGATGCAA 59.290 33.333 0.00 13.43 0.00 4.08
4059 5693 1.144691 TCCACTCCACATTGTTCCCA 58.855 50.000 0.00 0.00 0.00 4.37
4060 5694 1.073763 TCCACTCCACATTGTTCCCAG 59.926 52.381 0.00 0.00 0.00 4.45
4061 5695 0.883833 CACTCCACATTGTTCCCAGC 59.116 55.000 0.00 0.00 0.00 4.85
4062 5696 0.251341 ACTCCACATTGTTCCCAGCC 60.251 55.000 0.00 0.00 0.00 4.85
4063 5697 0.251297 CTCCACATTGTTCCCAGCCA 60.251 55.000 0.00 0.00 0.00 4.75
4064 5698 0.409092 TCCACATTGTTCCCAGCCAT 59.591 50.000 0.00 0.00 0.00 4.40
4065 5699 0.533491 CCACATTGTTCCCAGCCATG 59.467 55.000 0.00 0.00 0.00 3.66
4066 5700 1.548081 CACATTGTTCCCAGCCATGA 58.452 50.000 0.00 0.00 0.00 3.07
4067 5701 2.104967 CACATTGTTCCCAGCCATGAT 58.895 47.619 0.00 0.00 0.00 2.45
4068 5702 2.104967 ACATTGTTCCCAGCCATGATG 58.895 47.619 0.00 0.00 0.00 3.07
4069 5703 1.117150 ATTGTTCCCAGCCATGATGC 58.883 50.000 0.00 0.00 0.00 3.91
4070 5704 0.251698 TTGTTCCCAGCCATGATGCA 60.252 50.000 0.00 0.00 0.00 3.96
4071 5705 0.251698 TGTTCCCAGCCATGATGCAA 60.252 50.000 0.00 0.00 0.00 4.08
4072 5706 1.117150 GTTCCCAGCCATGATGCAAT 58.883 50.000 0.00 0.00 0.00 3.56
4073 5707 1.068127 GTTCCCAGCCATGATGCAATC 59.932 52.381 0.00 0.00 45.83 2.67
4084 5718 2.902705 GATGCAATCAACCATGGCAT 57.097 45.000 13.04 7.39 46.91 4.40
4085 5719 3.188159 GATGCAATCAACCATGGCATT 57.812 42.857 13.04 4.94 44.52 3.56
4086 5720 2.676632 TGCAATCAACCATGGCATTC 57.323 45.000 13.04 3.53 0.00 2.67
4087 5721 1.207570 TGCAATCAACCATGGCATTCC 59.792 47.619 13.04 0.00 0.00 3.01
4088 5722 6.485412 GATGCAATCAACCATGGCATTCCA 62.485 45.833 13.04 4.68 44.52 3.53
4089 5723 2.896168 CAATCAACCATGGCATTCCAC 58.104 47.619 13.04 0.00 46.92 4.02
4090 5724 2.498481 CAATCAACCATGGCATTCCACT 59.502 45.455 13.04 0.00 46.92 4.00
4091 5725 1.838112 TCAACCATGGCATTCCACTC 58.162 50.000 13.04 0.00 46.92 3.51
4092 5726 0.819582 CAACCATGGCATTCCACTCC 59.180 55.000 13.04 0.00 46.92 3.85
4093 5727 0.409092 AACCATGGCATTCCACTCCA 59.591 50.000 13.04 0.00 46.92 3.86
4094 5728 0.323725 ACCATGGCATTCCACTCCAC 60.324 55.000 13.04 0.00 46.92 4.02
4095 5729 0.323633 CCATGGCATTCCACTCCACA 60.324 55.000 0.00 0.00 46.92 4.17
4096 5730 1.687054 CCATGGCATTCCACTCCACAT 60.687 52.381 0.00 0.00 46.92 3.21
4097 5731 2.104967 CATGGCATTCCACTCCACATT 58.895 47.619 0.00 0.00 46.92 2.71
4098 5732 1.548081 TGGCATTCCACTCCACATTG 58.452 50.000 0.00 0.00 37.47 2.82
4099 5733 1.203038 TGGCATTCCACTCCACATTGT 60.203 47.619 0.00 0.00 37.47 2.71
4100 5734 1.895131 GGCATTCCACTCCACATTGTT 59.105 47.619 0.00 0.00 0.00 2.83
4101 5735 2.094545 GGCATTCCACTCCACATTGTTC 60.095 50.000 0.00 0.00 0.00 3.18
4102 5736 2.094545 GCATTCCACTCCACATTGTTCC 60.095 50.000 0.00 0.00 0.00 3.62
4111 5745 0.039256 CACATTGTTCCCAGCCAACG 60.039 55.000 0.00 0.00 0.00 4.10
4126 5760 1.134907 CCAACGCACCCTTACGTATCT 60.135 52.381 0.00 0.00 42.68 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.212589 TCATCGTCTATATAAATTGGGGCTCA 59.787 38.462 0.00 0.00 0.00 4.26
1 2 6.640518 TCATCGTCTATATAAATTGGGGCTC 58.359 40.000 0.00 0.00 0.00 4.70
2 3 6.352222 CCTCATCGTCTATATAAATTGGGGCT 60.352 42.308 0.00 0.00 0.00 5.19
3 4 5.817816 CCTCATCGTCTATATAAATTGGGGC 59.182 44.000 0.00 0.00 0.00 5.80
4 5 6.349300 CCCTCATCGTCTATATAAATTGGGG 58.651 44.000 0.00 0.00 0.00 4.96
5 6 5.817816 GCCCTCATCGTCTATATAAATTGGG 59.182 44.000 0.00 0.00 0.00 4.12
6 7 6.644347 AGCCCTCATCGTCTATATAAATTGG 58.356 40.000 0.00 0.00 0.00 3.16
7 8 7.923344 CCTAGCCCTCATCGTCTATATAAATTG 59.077 40.741 0.00 0.00 0.00 2.32
8 9 7.070074 CCCTAGCCCTCATCGTCTATATAAATT 59.930 40.741 0.00 0.00 0.00 1.82
9 10 6.551601 CCCTAGCCCTCATCGTCTATATAAAT 59.448 42.308 0.00 0.00 0.00 1.40
10 11 5.892119 CCCTAGCCCTCATCGTCTATATAAA 59.108 44.000 0.00 0.00 0.00 1.40
11 12 5.044328 ACCCTAGCCCTCATCGTCTATATAA 60.044 44.000 0.00 0.00 0.00 0.98
12 13 4.477581 ACCCTAGCCCTCATCGTCTATATA 59.522 45.833 0.00 0.00 0.00 0.86
13 14 3.269906 ACCCTAGCCCTCATCGTCTATAT 59.730 47.826 0.00 0.00 0.00 0.86
14 15 2.648304 ACCCTAGCCCTCATCGTCTATA 59.352 50.000 0.00 0.00 0.00 1.31
15 16 1.429687 ACCCTAGCCCTCATCGTCTAT 59.570 52.381 0.00 0.00 0.00 1.98
16 17 0.851469 ACCCTAGCCCTCATCGTCTA 59.149 55.000 0.00 0.00 0.00 2.59
17 18 0.032017 AACCCTAGCCCTCATCGTCT 60.032 55.000 0.00 0.00 0.00 4.18
18 19 0.831307 AAACCCTAGCCCTCATCGTC 59.169 55.000 0.00 0.00 0.00 4.20
19 20 1.761198 GTAAACCCTAGCCCTCATCGT 59.239 52.381 0.00 0.00 0.00 3.73
20 21 1.760613 TGTAAACCCTAGCCCTCATCG 59.239 52.381 0.00 0.00 0.00 3.84
21 22 3.496870 CCATGTAAACCCTAGCCCTCATC 60.497 52.174 0.00 0.00 0.00 2.92
22 23 2.443255 CCATGTAAACCCTAGCCCTCAT 59.557 50.000 0.00 0.00 0.00 2.90
23 24 1.843851 CCATGTAAACCCTAGCCCTCA 59.156 52.381 0.00 0.00 0.00 3.86
24 25 1.143073 CCCATGTAAACCCTAGCCCTC 59.857 57.143 0.00 0.00 0.00 4.30
25 26 1.222567 CCCATGTAAACCCTAGCCCT 58.777 55.000 0.00 0.00 0.00 5.19
26 27 0.185175 CCCCATGTAAACCCTAGCCC 59.815 60.000 0.00 0.00 0.00 5.19
27 28 0.924090 ACCCCATGTAAACCCTAGCC 59.076 55.000 0.00 0.00 0.00 3.93
28 29 2.651455 GAACCCCATGTAAACCCTAGC 58.349 52.381 0.00 0.00 0.00 3.42
29 30 2.502538 TCGAACCCCATGTAAACCCTAG 59.497 50.000 0.00 0.00 0.00 3.02
30 31 2.549082 TCGAACCCCATGTAAACCCTA 58.451 47.619 0.00 0.00 0.00 3.53
31 32 1.364269 TCGAACCCCATGTAAACCCT 58.636 50.000 0.00 0.00 0.00 4.34
32 33 2.294979 GATCGAACCCCATGTAAACCC 58.705 52.381 0.00 0.00 0.00 4.11
33 34 1.937899 CGATCGAACCCCATGTAAACC 59.062 52.381 10.26 0.00 0.00 3.27
48 49 2.510874 GAGACGGCATAAGATCGATCG 58.489 52.381 19.33 9.36 0.00 3.69
64 65 1.767681 AGGAGATGCCAAGATGGAGAC 59.232 52.381 0.00 0.00 40.96 3.36
106 107 0.817654 GGTCCAATGTAAAGGGCAGC 59.182 55.000 0.00 0.00 0.00 5.25
142 143 3.455469 GGTGGGAAGCATGGCAGC 61.455 66.667 0.00 0.00 0.00 5.25
209 210 2.441001 CAAGAATGATAGCAGGGTCCCT 59.559 50.000 3.85 3.85 0.00 4.20
221 222 3.004315 ACGCCGAAACAAACAAGAATGAT 59.996 39.130 0.00 0.00 0.00 2.45
235 236 2.703798 CCTACCCGAGACGCCGAAA 61.704 63.158 0.00 0.00 0.00 3.46
249 250 0.958822 CCAAAGCCACACAACCCTAC 59.041 55.000 0.00 0.00 0.00 3.18
251 252 2.133641 GCCAAAGCCACACAACCCT 61.134 57.895 0.00 0.00 0.00 4.34
255 256 0.901124 ACTTTGCCAAAGCCACACAA 59.099 45.000 16.89 0.00 42.27 3.33
303 304 1.486310 CACCATCAGAAAGGGGATCGA 59.514 52.381 0.00 0.00 0.00 3.59
312 313 2.093500 ACGCTAGATGCACCATCAGAAA 60.093 45.455 7.83 0.00 42.72 2.52
314 315 1.067669 GACGCTAGATGCACCATCAGA 59.932 52.381 7.83 0.00 42.72 3.27
335 336 1.662629 CGCCATCACACATTCTCTGAC 59.337 52.381 0.00 0.00 0.00 3.51
344 345 0.943835 CGAAGACACGCCATCACACA 60.944 55.000 0.00 0.00 0.00 3.72
377 378 3.099267 ACAGATCCATCGAACCGAATC 57.901 47.619 0.00 0.00 39.99 2.52
406 407 3.841643 TGACCGAAGACGAATAAAGACC 58.158 45.455 0.00 0.00 42.66 3.85
413 414 4.920640 AGACATATGACCGAAGACGAAT 57.079 40.909 10.38 0.00 42.66 3.34
468 479 1.600485 GAACAACAACCGTCACCGATT 59.400 47.619 0.00 0.00 35.63 3.34
506 517 5.297776 CGAGGAATCATCATGTTAAAGCCTT 59.702 40.000 0.00 0.00 0.00 4.35
515 526 5.350504 AGAAAGTCGAGGAATCATCATGT 57.649 39.130 0.00 0.00 0.00 3.21
528 539 6.018507 GGCAAAACTTGTTAGTAGAAAGTCGA 60.019 38.462 1.32 0.00 33.09 4.20
626 639 6.723298 AAAATACAATCAGGTTTGTGGACA 57.277 33.333 6.10 0.00 40.00 4.02
662 675 9.249457 CGTATGTCATGACAGTACAAAGAATAT 57.751 33.333 30.63 13.63 45.48 1.28
715 729 4.334481 GCCAACAACCGCACTAGTAATATT 59.666 41.667 0.00 0.00 0.00 1.28
722 736 1.225376 TTCGCCAACAACCGCACTAG 61.225 55.000 0.00 0.00 0.00 2.57
728 742 2.981400 AATTACTTCGCCAACAACCG 57.019 45.000 0.00 0.00 0.00 4.44
780 794 3.104512 TCTAGGAAATGGCTCTCGGAAA 58.895 45.455 0.00 0.00 0.00 3.13
949 2046 3.695825 GGAGAGGGGTGGAGGGGA 61.696 72.222 0.00 0.00 0.00 4.81
1184 2292 2.420687 GGACAAGCTCCAATCCCTACTG 60.421 54.545 0.00 0.00 39.21 2.74
2040 3431 6.925718 GCTCCCTTCCTGAAAAATAAATATGC 59.074 38.462 0.00 0.00 0.00 3.14
2301 3692 1.072806 TGATCCATGCCATAGTCCAGC 59.927 52.381 0.00 0.00 0.00 4.85
2310 3701 1.810455 TCTCCTCATGATCCATGCCA 58.190 50.000 0.00 0.00 41.18 4.92
2373 3764 1.261619 GGCTTTATCTTGCGATCCACG 59.738 52.381 0.00 0.00 45.66 4.94
2442 3833 1.492176 GGCCTCTTCCTGATGATTCCA 59.508 52.381 0.00 0.00 0.00 3.53
2539 3930 1.356124 ATCACCTTGCTCCACTGAGT 58.644 50.000 0.00 0.00 40.95 3.41
2814 4205 5.072329 TCTCTCCAGGAAAAACTCTGTGATT 59.928 40.000 0.00 0.00 0.00 2.57
3029 4420 0.401738 CACCCCACAACCAGTCATCT 59.598 55.000 0.00 0.00 0.00 2.90
3132 4523 5.488262 TCTGGTTTCTGAGATTGTGATCA 57.512 39.130 0.00 0.00 34.60 2.92
3133 4524 6.998968 AATCTGGTTTCTGAGATTGTGATC 57.001 37.500 0.00 0.00 37.50 2.92
3134 4525 6.944290 TCAAATCTGGTTTCTGAGATTGTGAT 59.056 34.615 0.00 0.00 38.62 3.06
3135 4526 6.298361 TCAAATCTGGTTTCTGAGATTGTGA 58.702 36.000 0.00 0.00 38.62 3.58
3136 4527 6.349115 CCTCAAATCTGGTTTCTGAGATTGTG 60.349 42.308 4.33 0.00 38.62 3.33
3137 4528 5.709164 CCTCAAATCTGGTTTCTGAGATTGT 59.291 40.000 4.33 0.00 38.62 2.71
3138 4529 5.942236 TCCTCAAATCTGGTTTCTGAGATTG 59.058 40.000 4.33 0.00 38.62 2.67
3139 4530 6.131972 TCCTCAAATCTGGTTTCTGAGATT 57.868 37.500 4.33 0.00 40.02 2.40
3140 4531 5.768980 TCCTCAAATCTGGTTTCTGAGAT 57.231 39.130 4.33 0.00 0.00 2.75
3141 4532 5.567037 TTCCTCAAATCTGGTTTCTGAGA 57.433 39.130 4.33 0.00 0.00 3.27
3142 4533 6.830873 ATTTCCTCAAATCTGGTTTCTGAG 57.169 37.500 0.00 0.00 0.00 3.35
3143 4534 7.006509 AGAATTTCCTCAAATCTGGTTTCTGA 58.993 34.615 0.00 0.00 30.37 3.27
3144 4535 7.224522 AGAATTTCCTCAAATCTGGTTTCTG 57.775 36.000 0.00 0.00 30.37 3.02
3145 4536 7.944554 TGTAGAATTTCCTCAAATCTGGTTTCT 59.055 33.333 0.00 0.00 30.37 2.52
3146 4537 8.110860 TGTAGAATTTCCTCAAATCTGGTTTC 57.889 34.615 0.00 0.00 30.37 2.78
3147 4538 8.477419 TTGTAGAATTTCCTCAAATCTGGTTT 57.523 30.769 0.00 0.00 30.37 3.27
3148 4539 8.477419 TTTGTAGAATTTCCTCAAATCTGGTT 57.523 30.769 10.48 0.00 30.37 3.67
3149 4540 8.477419 TTTTGTAGAATTTCCTCAAATCTGGT 57.523 30.769 13.47 0.00 30.37 4.00
3150 4541 8.796475 TCTTTTGTAGAATTTCCTCAAATCTGG 58.204 33.333 13.47 7.88 30.37 3.86
3157 4548 8.796475 CCTGATTTCTTTTGTAGAATTTCCTCA 58.204 33.333 0.00 0.00 42.32 3.86
3158 4549 8.797438 ACCTGATTTCTTTTGTAGAATTTCCTC 58.203 33.333 0.00 0.00 42.32 3.71
3159 4550 8.579863 CACCTGATTTCTTTTGTAGAATTTCCT 58.420 33.333 0.00 0.00 42.32 3.36
3160 4551 7.814587 CCACCTGATTTCTTTTGTAGAATTTCC 59.185 37.037 0.00 0.00 42.32 3.13
3161 4552 8.576442 TCCACCTGATTTCTTTTGTAGAATTTC 58.424 33.333 0.00 0.00 42.32 2.17
3162 4553 8.477419 TCCACCTGATTTCTTTTGTAGAATTT 57.523 30.769 0.00 0.00 42.32 1.82
3163 4554 8.655935 ATCCACCTGATTTCTTTTGTAGAATT 57.344 30.769 0.00 0.00 42.32 2.17
3164 4555 8.655935 AATCCACCTGATTTCTTTTGTAGAAT 57.344 30.769 0.00 0.00 40.92 2.40
3177 4568 7.781219 TGTGATCATATCAAAATCCACCTGATT 59.219 33.333 0.00 0.00 41.69 2.57
3178 4569 7.292319 TGTGATCATATCAAAATCCACCTGAT 58.708 34.615 0.00 0.00 41.69 2.90
3179 4570 6.661777 TGTGATCATATCAAAATCCACCTGA 58.338 36.000 0.00 0.00 41.69 3.86
3180 4571 6.947644 TGTGATCATATCAAAATCCACCTG 57.052 37.500 0.00 0.00 41.69 4.00
3190 4581 8.618677 GCTTTTCTGAGATTGTGATCATATCAA 58.381 33.333 17.82 10.47 41.69 2.57
3191 4582 7.771826 TGCTTTTCTGAGATTGTGATCATATCA 59.228 33.333 17.82 7.48 36.84 2.15
3192 4583 8.068977 GTGCTTTTCTGAGATTGTGATCATATC 58.931 37.037 0.00 5.70 34.60 1.63
3193 4584 7.555195 TGTGCTTTTCTGAGATTGTGATCATAT 59.445 33.333 0.00 0.00 34.60 1.78
3194 4585 6.880529 TGTGCTTTTCTGAGATTGTGATCATA 59.119 34.615 0.00 0.00 34.60 2.15
3195 4586 5.708697 TGTGCTTTTCTGAGATTGTGATCAT 59.291 36.000 0.00 0.00 34.60 2.45
3279 4670 3.146066 TCCAACATAGTTCTTGTGTGCC 58.854 45.455 0.00 0.00 30.82 5.01
3354 4745 1.156736 AACCGTTCCTCTCAAATGCG 58.843 50.000 0.00 0.00 0.00 4.73
3503 5066 3.208747 ACCCTCGCAAAAAGAGAAGAA 57.791 42.857 0.00 0.00 37.93 2.52
3504 5067 2.930826 ACCCTCGCAAAAAGAGAAGA 57.069 45.000 0.00 0.00 37.93 2.87
3505 5068 3.926616 TCTACCCTCGCAAAAAGAGAAG 58.073 45.455 0.00 0.00 37.93 2.85
3506 5069 4.253685 CATCTACCCTCGCAAAAAGAGAA 58.746 43.478 0.00 0.00 37.93 2.87
3507 5070 3.861840 CATCTACCCTCGCAAAAAGAGA 58.138 45.455 0.00 0.00 37.93 3.10
3508 5071 2.352960 GCATCTACCCTCGCAAAAAGAG 59.647 50.000 0.00 0.00 35.60 2.85
3509 5072 2.356135 GCATCTACCCTCGCAAAAAGA 58.644 47.619 0.00 0.00 0.00 2.52
3510 5073 1.401905 GGCATCTACCCTCGCAAAAAG 59.598 52.381 0.00 0.00 0.00 2.27
3511 5074 1.459450 GGCATCTACCCTCGCAAAAA 58.541 50.000 0.00 0.00 0.00 1.94
3512 5075 0.742990 CGGCATCTACCCTCGCAAAA 60.743 55.000 0.00 0.00 0.00 2.44
3513 5076 1.153449 CGGCATCTACCCTCGCAAA 60.153 57.895 0.00 0.00 0.00 3.68
3514 5077 1.038681 TACGGCATCTACCCTCGCAA 61.039 55.000 0.00 0.00 0.00 4.85
3515 5078 1.038681 TTACGGCATCTACCCTCGCA 61.039 55.000 0.00 0.00 0.00 5.10
3516 5079 0.318784 CTTACGGCATCTACCCTCGC 60.319 60.000 0.00 0.00 0.00 5.03
3517 5080 1.030457 ACTTACGGCATCTACCCTCG 58.970 55.000 0.00 0.00 0.00 4.63
3518 5081 2.483188 CCAACTTACGGCATCTACCCTC 60.483 54.545 0.00 0.00 0.00 4.30
3519 5082 1.485066 CCAACTTACGGCATCTACCCT 59.515 52.381 0.00 0.00 0.00 4.34
3520 5083 1.949465 CCAACTTACGGCATCTACCC 58.051 55.000 0.00 0.00 0.00 3.69
3529 5092 3.634568 TTTGACATTGCCAACTTACGG 57.365 42.857 0.00 0.00 0.00 4.02
3530 5093 3.364621 GCATTTGACATTGCCAACTTACG 59.635 43.478 0.51 0.00 32.66 3.18
3531 5094 3.364621 CGCATTTGACATTGCCAACTTAC 59.635 43.478 5.56 0.00 35.41 2.34
3532 5095 3.573598 CGCATTTGACATTGCCAACTTA 58.426 40.909 5.56 0.00 35.41 2.24
3533 5096 2.406130 CGCATTTGACATTGCCAACTT 58.594 42.857 5.56 0.00 35.41 2.66
3702 5266 1.329292 GCTGTACAAAGTGTGCGTCAA 59.671 47.619 0.00 0.00 35.67 3.18
3797 5418 5.483811 TGAGTGAACAAACACACTAGAACA 58.516 37.500 0.00 0.00 45.54 3.18
3876 5497 1.215673 AGAGAGCGAGTATTCCCTCCA 59.784 52.381 0.00 0.00 30.07 3.86
3884 5505 5.406780 CACAACAAAGAAAGAGAGCGAGTAT 59.593 40.000 0.00 0.00 0.00 2.12
3924 5549 5.070001 AGCTGGCTACAACATTTAACTTCA 58.930 37.500 0.00 0.00 0.00 3.02
3992 5626 8.459911 TCGAAGATCTACAATACATGGAAGTA 57.540 34.615 0.00 0.00 0.00 2.24
4017 5651 2.502130 TGCCATGGTTGATTGCATCATT 59.498 40.909 14.67 0.00 39.39 2.57
4059 5693 1.855295 TGGTTGATTGCATCATGGCT 58.145 45.000 0.00 0.00 39.39 4.75
4060 5694 2.479837 CATGGTTGATTGCATCATGGC 58.520 47.619 0.00 0.00 39.39 4.40
4061 5695 3.106242 CCATGGTTGATTGCATCATGG 57.894 47.619 2.57 6.30 43.33 3.66
4062 5696 2.159028 TGCCATGGTTGATTGCATCATG 60.159 45.455 14.67 0.00 39.39 3.07
4063 5697 2.112190 TGCCATGGTTGATTGCATCAT 58.888 42.857 14.67 0.00 39.39 2.45
4064 5698 1.558233 TGCCATGGTTGATTGCATCA 58.442 45.000 14.67 0.00 37.55 3.07
4065 5699 2.902705 ATGCCATGGTTGATTGCATC 57.097 45.000 14.67 0.00 38.17 3.91
4066 5700 2.158871 GGAATGCCATGGTTGATTGCAT 60.159 45.455 14.67 5.55 44.02 3.96
4067 5701 1.207570 GGAATGCCATGGTTGATTGCA 59.792 47.619 14.67 3.05 36.23 4.08
4068 5702 1.207570 TGGAATGCCATGGTTGATTGC 59.792 47.619 14.67 14.25 39.92 3.56
4079 5713 1.203038 ACAATGTGGAGTGGAATGCCA 60.203 47.619 0.00 0.00 43.47 4.92
4080 5714 1.549203 ACAATGTGGAGTGGAATGCC 58.451 50.000 0.00 0.00 0.00 4.40
4081 5715 2.094545 GGAACAATGTGGAGTGGAATGC 60.095 50.000 0.00 0.00 0.00 3.56
4082 5716 2.493278 GGGAACAATGTGGAGTGGAATG 59.507 50.000 0.00 0.00 0.00 2.67
4083 5717 2.109834 TGGGAACAATGTGGAGTGGAAT 59.890 45.455 0.00 0.00 37.44 3.01
4084 5718 1.496857 TGGGAACAATGTGGAGTGGAA 59.503 47.619 0.00 0.00 37.44 3.53
4085 5719 1.073763 CTGGGAACAATGTGGAGTGGA 59.926 52.381 0.00 0.00 42.06 4.02
4086 5720 1.538047 CTGGGAACAATGTGGAGTGG 58.462 55.000 0.00 0.00 42.06 4.00
4087 5721 0.883833 GCTGGGAACAATGTGGAGTG 59.116 55.000 0.00 0.00 42.06 3.51
4088 5722 0.251341 GGCTGGGAACAATGTGGAGT 60.251 55.000 0.00 0.00 42.06 3.85
4089 5723 0.251297 TGGCTGGGAACAATGTGGAG 60.251 55.000 0.00 0.00 42.06 3.86
4090 5724 0.187117 TTGGCTGGGAACAATGTGGA 59.813 50.000 0.00 0.00 42.06 4.02
4091 5725 0.318120 GTTGGCTGGGAACAATGTGG 59.682 55.000 0.00 0.00 42.06 4.17
4092 5726 0.039256 CGTTGGCTGGGAACAATGTG 60.039 55.000 0.00 0.00 42.06 3.21
4093 5727 1.805428 GCGTTGGCTGGGAACAATGT 61.805 55.000 0.00 0.00 42.06 2.71
4094 5728 1.080569 GCGTTGGCTGGGAACAATG 60.081 57.895 0.00 0.00 42.06 2.82
4095 5729 1.530419 TGCGTTGGCTGGGAACAAT 60.530 52.632 0.00 0.00 42.06 2.71
4096 5730 2.124109 TGCGTTGGCTGGGAACAA 60.124 55.556 0.00 0.00 42.06 2.83
4097 5731 2.904866 GTGCGTTGGCTGGGAACA 60.905 61.111 0.00 0.00 40.82 3.18
4098 5732 3.670377 GGTGCGTTGGCTGGGAAC 61.670 66.667 0.00 0.00 40.82 3.62
4099 5733 4.966787 GGGTGCGTTGGCTGGGAA 62.967 66.667 0.00 0.00 40.82 3.97
4101 5735 3.561120 TAAGGGTGCGTTGGCTGGG 62.561 63.158 0.00 0.00 40.82 4.45
4102 5736 2.033448 TAAGGGTGCGTTGGCTGG 59.967 61.111 0.00 0.00 40.82 4.85
4111 5745 2.987752 GGCAGATACGTAAGGGTGC 58.012 57.895 0.00 6.33 46.39 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.