Multiple sequence alignment - TraesCS6A01G214100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G214100 chr6A 100.000 4945 0 0 1 4945 390730389 390735333 0.000000e+00 9132
1 TraesCS6A01G214100 chr6A 96.099 282 11 0 360 641 390730467 390730748 1.250000e-125 460
2 TraesCS6A01G214100 chr6A 96.099 282 11 0 79 360 390730748 390731029 1.250000e-125 460
3 TraesCS6A01G214100 chr6A 84.836 244 19 7 375 601 465626641 465626399 3.850000e-56 230
4 TraesCS6A01G214100 chr6D 96.858 3787 76 18 650 4411 273087685 273091453 0.000000e+00 6294
5 TraesCS6A01G214100 chr6D 96.840 538 16 1 4408 4945 273091533 273092069 0.000000e+00 898
6 TraesCS6A01G214100 chr6B 95.453 2331 70 9 658 2976 435304556 435306862 0.000000e+00 3685
7 TraesCS6A01G214100 chr6B 96.824 2015 44 7 2936 4942 435306854 435308856 0.000000e+00 3349
8 TraesCS6A01G214100 chr6B 80.921 304 31 16 80 361 144849463 144849761 1.080000e-51 215
9 TraesCS6A01G214100 chr2D 80.000 670 111 18 2052 2705 441527269 441527931 1.610000e-129 473
10 TraesCS6A01G214100 chr2D 80.602 598 64 29 94 650 325807605 325807019 9.900000e-112 414
11 TraesCS6A01G214100 chr2D 80.000 595 62 27 93 647 325807891 325807314 2.160000e-103 387
12 TraesCS6A01G214100 chr2B 79.851 670 112 17 2052 2705 519015907 519016569 7.500000e-128 468
13 TraesCS6A01G214100 chr2B 84.354 294 24 14 375 648 467860174 467859883 8.160000e-68 268
14 TraesCS6A01G214100 chr2B 83.624 287 25 14 94 360 467860174 467859890 2.960000e-62 250
15 TraesCS6A01G214100 chr2A 79.671 669 115 16 2052 2705 585137491 585138153 3.490000e-126 462
16 TraesCS6A01G214100 chr3B 84.300 293 22 15 377 649 39464864 39465152 1.060000e-66 265
17 TraesCS6A01G214100 chr3B 83.972 287 25 13 90 356 39464858 39465143 6.350000e-64 255
18 TraesCS6A01G214100 chr1B 83.849 291 30 12 81 356 334657835 334657547 1.370000e-65 261
19 TraesCS6A01G214100 chr5D 83.278 299 26 15 360 643 485762287 485762576 2.280000e-63 254
20 TraesCS6A01G214100 chr5D 83.390 295 27 12 79 358 485762287 485762574 2.280000e-63 254
21 TraesCS6A01G214100 chr7D 82.792 308 24 20 78 360 373582241 373582544 1.060000e-61 248
22 TraesCS6A01G214100 chr7D 82.886 298 26 16 375 648 373582255 373582551 1.380000e-60 244
23 TraesCS6A01G214100 chr7B 83.275 287 30 15 371 641 184169504 184169788 1.060000e-61 248
24 TraesCS6A01G214100 chr7B 82.699 289 32 15 90 362 184169504 184169790 1.780000e-59 241
25 TraesCS6A01G214100 chr7B 80.995 221 21 8 156 356 196373508 196373289 6.630000e-34 156
26 TraesCS6A01G214100 chr3A 82.034 295 29 17 375 649 621317510 621317800 3.850000e-56 230
27 TraesCS6A01G214100 chr3A 82.042 284 29 15 93 356 621317509 621317790 6.440000e-54 222


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G214100 chr6A 390730389 390735333 4944 False 9132.0 9132 100.0000 1 4945 1 chr6A.!!$F1 4944
1 TraesCS6A01G214100 chr6A 390730467 390731029 562 False 460.0 460 96.0990 79 641 2 chr6A.!!$F2 562
2 TraesCS6A01G214100 chr6D 273087685 273092069 4384 False 3596.0 6294 96.8490 650 4945 2 chr6D.!!$F1 4295
3 TraesCS6A01G214100 chr6B 435304556 435308856 4300 False 3517.0 3685 96.1385 658 4942 2 chr6B.!!$F2 4284
4 TraesCS6A01G214100 chr2D 441527269 441527931 662 False 473.0 473 80.0000 2052 2705 1 chr2D.!!$F1 653
5 TraesCS6A01G214100 chr2D 325807019 325807891 872 True 400.5 414 80.3010 93 650 2 chr2D.!!$R1 557
6 TraesCS6A01G214100 chr2B 519015907 519016569 662 False 468.0 468 79.8510 2052 2705 1 chr2B.!!$F1 653
7 TraesCS6A01G214100 chr2A 585137491 585138153 662 False 462.0 462 79.6710 2052 2705 1 chr2A.!!$F1 653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
321 322 0.181114 CGAAGGGATGATGGGAAGCA 59.819 55.000 0.00 0.0 0.00 3.91 F
407 408 0.248054 CGTGCATTGCAACGGGATAC 60.248 55.000 13.94 0.0 41.47 2.24 F
1434 1443 0.314935 CCTGGTGTGAATGGTGTTGC 59.685 55.000 0.00 0.0 0.00 4.17 F
1817 1832 1.029681 ACAAGGGTCCGTGAAAAAGC 58.970 50.000 9.78 0.0 0.00 3.51 F
2639 2681 2.223923 GCTCTCTCGTCAATATGGCAGT 60.224 50.000 0.00 0.0 0.00 4.40 F
3715 3791 2.100916 GCTGCAGATGCCAATCTTCAAT 59.899 45.455 20.43 0.0 41.43 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1135 1144 0.099082 GCTCCTTCGACACCTCGTAG 59.901 60.000 0.00 0.0 41.02 3.51 R
1555 1567 1.228124 GGCAACCACAGTGCCTACA 60.228 57.895 8.18 0.0 44.72 2.74 R
3362 3436 4.371786 TGATATGCGCTGTAAGAAGAAGG 58.628 43.478 9.73 0.0 34.07 3.46 R
3597 3673 2.048601 AGAGGATCAGGGCTCTTCATG 58.951 52.381 0.00 0.0 37.82 3.07 R
3740 3816 2.224113 GGACGTCTAACCTTGGAACACA 60.224 50.000 16.46 0.0 39.29 3.72 R
4683 4853 5.016831 GGATAACAAAGGTCATGGGAAGTT 58.983 41.667 0.00 0.0 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.679355 TTTTGATCCAAGCGAACACG 57.321 45.000 0.00 0.00 0.00 4.49
30 31 3.169924 GCGAACACGCGATGACGA 61.170 61.111 15.93 0.00 42.84 4.20
31 32 2.712918 GCGAACACGCGATGACGAA 61.713 57.895 15.93 0.00 42.84 3.85
32 33 1.770432 CGAACACGCGATGACGAAA 59.230 52.632 15.93 0.00 42.66 3.46
33 34 0.246374 CGAACACGCGATGACGAAAG 60.246 55.000 15.93 0.00 42.66 2.62
34 35 1.057636 GAACACGCGATGACGAAAGA 58.942 50.000 15.93 0.00 42.66 2.52
35 36 1.057847 GAACACGCGATGACGAAAGAG 59.942 52.381 15.93 0.00 42.66 2.85
36 37 1.341802 CACGCGATGACGAAAGAGC 59.658 57.895 15.93 0.00 42.66 4.09
37 38 2.610308 CGCGATGACGAAAGAGCG 59.390 61.111 0.00 0.00 42.66 5.03
38 39 2.849966 CGCGATGACGAAAGAGCGG 61.850 63.158 0.00 0.00 43.29 5.52
39 40 2.517450 GCGATGACGAAAGAGCGGG 61.517 63.158 0.00 0.00 42.66 6.13
40 41 2.517450 CGATGACGAAAGAGCGGGC 61.517 63.158 0.00 0.00 42.66 6.13
41 42 2.509336 ATGACGAAAGAGCGGGCG 60.509 61.111 0.00 0.00 35.12 6.13
42 43 3.296709 ATGACGAAAGAGCGGGCGT 62.297 57.895 0.00 0.00 39.99 5.68
43 44 3.479269 GACGAAAGAGCGGGCGTG 61.479 66.667 0.00 0.00 37.07 5.34
44 45 4.295119 ACGAAAGAGCGGGCGTGT 62.295 61.111 0.00 0.00 35.44 4.49
45 46 3.041940 CGAAAGAGCGGGCGTGTT 61.042 61.111 0.00 0.00 0.00 3.32
46 47 2.556287 GAAAGAGCGGGCGTGTTG 59.444 61.111 0.00 0.00 0.00 3.33
47 48 2.966309 GAAAGAGCGGGCGTGTTGG 61.966 63.158 0.00 0.00 0.00 3.77
48 49 3.469863 AAAGAGCGGGCGTGTTGGA 62.470 57.895 0.00 0.00 0.00 3.53
49 50 4.681978 AGAGCGGGCGTGTTGGAC 62.682 66.667 0.00 0.00 0.00 4.02
50 51 4.980805 GAGCGGGCGTGTTGGACA 62.981 66.667 0.00 0.00 0.00 4.02
64 65 2.567049 GACACAGGGTCGACGGAG 59.433 66.667 9.92 3.83 36.65 4.63
65 66 2.266627 GACACAGGGTCGACGGAGT 61.267 63.158 9.92 6.39 39.82 3.85
66 67 1.803366 GACACAGGGTCGACGGAGTT 61.803 60.000 9.92 0.00 37.65 3.01
67 68 3.923111 GACACAGGGTCGACGGAGTTG 62.923 61.905 9.92 5.44 44.94 3.16
76 77 3.142393 ACGGAGTTGCTGCTCTGT 58.858 55.556 14.10 14.10 46.81 3.41
77 78 3.867771 CGGAGTTGCTGCTCTGTC 58.132 61.111 0.00 0.00 37.17 3.51
158 159 9.472361 TTCTAATACGCTAGATTGTGATTTACC 57.528 33.333 0.00 0.00 0.00 2.85
160 161 7.948278 AATACGCTAGATTGTGATTTACCTC 57.052 36.000 0.00 0.00 0.00 3.85
161 162 5.599999 ACGCTAGATTGTGATTTACCTCT 57.400 39.130 0.00 0.00 0.00 3.69
162 163 5.593010 ACGCTAGATTGTGATTTACCTCTC 58.407 41.667 0.00 0.00 0.00 3.20
163 164 5.127194 ACGCTAGATTGTGATTTACCTCTCA 59.873 40.000 0.00 0.00 0.00 3.27
164 165 6.042777 CGCTAGATTGTGATTTACCTCTCAA 58.957 40.000 0.00 0.00 34.31 3.02
165 166 6.703607 CGCTAGATTGTGATTTACCTCTCAAT 59.296 38.462 0.00 2.13 40.29 2.57
166 167 7.867909 CGCTAGATTGTGATTTACCTCTCAATA 59.132 37.037 0.00 0.00 38.68 1.90
167 168 9.547753 GCTAGATTGTGATTTACCTCTCAATAA 57.452 33.333 0.00 0.00 38.68 1.40
209 210 5.964958 AATGTTCATCAAATTCTGACCGT 57.035 34.783 0.00 0.00 36.69 4.83
210 211 4.747540 TGTTCATCAAATTCTGACCGTG 57.252 40.909 0.00 0.00 36.69 4.94
211 212 4.384940 TGTTCATCAAATTCTGACCGTGA 58.615 39.130 0.00 0.00 36.69 4.35
212 213 4.819088 TGTTCATCAAATTCTGACCGTGAA 59.181 37.500 0.00 0.00 36.69 3.18
213 214 5.473162 TGTTCATCAAATTCTGACCGTGAAT 59.527 36.000 0.00 0.00 34.60 2.57
214 215 6.016360 TGTTCATCAAATTCTGACCGTGAATT 60.016 34.615 0.00 0.00 43.44 2.17
215 216 7.174080 TGTTCATCAAATTCTGACCGTGAATTA 59.826 33.333 0.00 0.00 41.54 1.40
216 217 7.072177 TCATCAAATTCTGACCGTGAATTAC 57.928 36.000 0.00 0.00 41.54 1.89
217 218 5.873179 TCAAATTCTGACCGTGAATTACC 57.127 39.130 0.00 0.00 41.54 2.85
218 219 5.556915 TCAAATTCTGACCGTGAATTACCT 58.443 37.500 0.00 0.00 41.54 3.08
219 220 6.001460 TCAAATTCTGACCGTGAATTACCTT 58.999 36.000 0.00 0.00 41.54 3.50
220 221 7.162761 TCAAATTCTGACCGTGAATTACCTTA 58.837 34.615 0.00 0.00 41.54 2.69
221 222 7.827236 TCAAATTCTGACCGTGAATTACCTTAT 59.173 33.333 0.00 0.00 41.54 1.73
222 223 9.104965 CAAATTCTGACCGTGAATTACCTTATA 57.895 33.333 0.00 0.00 41.54 0.98
223 224 9.847224 AAATTCTGACCGTGAATTACCTTATAT 57.153 29.630 0.00 0.00 41.54 0.86
224 225 9.847224 AATTCTGACCGTGAATTACCTTATATT 57.153 29.630 0.00 0.00 40.88 1.28
225 226 9.847224 ATTCTGACCGTGAATTACCTTATATTT 57.153 29.630 0.00 0.00 30.84 1.40
226 227 9.675464 TTCTGACCGTGAATTACCTTATATTTT 57.325 29.630 0.00 0.00 0.00 1.82
227 228 9.104965 TCTGACCGTGAATTACCTTATATTTTG 57.895 33.333 0.00 0.00 0.00 2.44
228 229 9.104965 CTGACCGTGAATTACCTTATATTTTGA 57.895 33.333 0.00 0.00 0.00 2.69
229 230 9.621629 TGACCGTGAATTACCTTATATTTTGAT 57.378 29.630 0.00 0.00 0.00 2.57
271 272 9.703677 TGGATTAAAAGGTAAGTAATTAAGGGG 57.296 33.333 0.00 0.00 0.00 4.79
272 273 9.925545 GGATTAAAAGGTAAGTAATTAAGGGGA 57.074 33.333 0.00 0.00 0.00 4.81
304 305 9.839817 TTATTATATTCATGAAAGGTTGGACGA 57.160 29.630 13.09 0.00 0.00 4.20
305 306 8.746052 ATTATATTCATGAAAGGTTGGACGAA 57.254 30.769 13.09 0.00 0.00 3.85
306 307 6.683974 ATATTCATGAAAGGTTGGACGAAG 57.316 37.500 13.09 0.00 0.00 3.79
307 308 2.778299 TCATGAAAGGTTGGACGAAGG 58.222 47.619 0.00 0.00 0.00 3.46
308 309 1.812571 CATGAAAGGTTGGACGAAGGG 59.187 52.381 0.00 0.00 0.00 3.95
309 310 1.133363 TGAAAGGTTGGACGAAGGGA 58.867 50.000 0.00 0.00 0.00 4.20
310 311 1.702957 TGAAAGGTTGGACGAAGGGAT 59.297 47.619 0.00 0.00 0.00 3.85
311 312 2.084546 GAAAGGTTGGACGAAGGGATG 58.915 52.381 0.00 0.00 0.00 3.51
312 313 1.358152 AAGGTTGGACGAAGGGATGA 58.642 50.000 0.00 0.00 0.00 2.92
313 314 1.584724 AGGTTGGACGAAGGGATGAT 58.415 50.000 0.00 0.00 0.00 2.45
314 315 1.210478 AGGTTGGACGAAGGGATGATG 59.790 52.381 0.00 0.00 0.00 3.07
315 316 1.668419 GTTGGACGAAGGGATGATGG 58.332 55.000 0.00 0.00 0.00 3.51
316 317 0.546122 TTGGACGAAGGGATGATGGG 59.454 55.000 0.00 0.00 0.00 4.00
317 318 0.326143 TGGACGAAGGGATGATGGGA 60.326 55.000 0.00 0.00 0.00 4.37
318 319 0.837272 GGACGAAGGGATGATGGGAA 59.163 55.000 0.00 0.00 0.00 3.97
319 320 1.202698 GGACGAAGGGATGATGGGAAG 60.203 57.143 0.00 0.00 0.00 3.46
320 321 0.181350 ACGAAGGGATGATGGGAAGC 59.819 55.000 0.00 0.00 0.00 3.86
321 322 0.181114 CGAAGGGATGATGGGAAGCA 59.819 55.000 0.00 0.00 0.00 3.91
322 323 1.408683 CGAAGGGATGATGGGAAGCAA 60.409 52.381 0.00 0.00 0.00 3.91
323 324 2.305009 GAAGGGATGATGGGAAGCAAG 58.695 52.381 0.00 0.00 0.00 4.01
324 325 0.554792 AGGGATGATGGGAAGCAAGG 59.445 55.000 0.00 0.00 0.00 3.61
325 326 0.259938 GGGATGATGGGAAGCAAGGT 59.740 55.000 0.00 0.00 0.00 3.50
326 327 1.396653 GGATGATGGGAAGCAAGGTG 58.603 55.000 0.00 0.00 0.00 4.00
327 328 1.064463 GGATGATGGGAAGCAAGGTGA 60.064 52.381 0.00 0.00 0.00 4.02
328 329 2.621407 GGATGATGGGAAGCAAGGTGAA 60.621 50.000 0.00 0.00 0.00 3.18
329 330 2.673775 TGATGGGAAGCAAGGTGAAA 57.326 45.000 0.00 0.00 0.00 2.69
330 331 3.173953 TGATGGGAAGCAAGGTGAAAT 57.826 42.857 0.00 0.00 0.00 2.17
331 332 2.827322 TGATGGGAAGCAAGGTGAAATG 59.173 45.455 0.00 0.00 0.00 2.32
332 333 1.631405 TGGGAAGCAAGGTGAAATGG 58.369 50.000 0.00 0.00 0.00 3.16
333 334 1.146774 TGGGAAGCAAGGTGAAATGGA 59.853 47.619 0.00 0.00 0.00 3.41
334 335 2.247358 GGGAAGCAAGGTGAAATGGAA 58.753 47.619 0.00 0.00 0.00 3.53
335 336 2.029020 GGGAAGCAAGGTGAAATGGAAC 60.029 50.000 0.00 0.00 0.00 3.62
336 337 2.029020 GGAAGCAAGGTGAAATGGAACC 60.029 50.000 0.00 0.00 36.66 3.62
338 339 2.519013 AGCAAGGTGAAATGGAACCTC 58.481 47.619 0.00 0.00 46.29 3.85
339 340 2.158475 AGCAAGGTGAAATGGAACCTCA 60.158 45.455 0.00 0.00 46.29 3.86
340 341 2.029918 GCAAGGTGAAATGGAACCTCAC 60.030 50.000 0.00 0.00 46.29 3.51
341 342 2.185004 AGGTGAAATGGAACCTCACG 57.815 50.000 0.00 0.00 43.52 4.35
342 343 1.420138 AGGTGAAATGGAACCTCACGT 59.580 47.619 0.00 0.00 43.52 4.49
343 344 2.158667 AGGTGAAATGGAACCTCACGTT 60.159 45.455 0.00 0.00 43.52 3.99
344 345 2.621526 GGTGAAATGGAACCTCACGTTT 59.378 45.455 0.00 0.00 40.32 3.60
345 346 3.067601 GGTGAAATGGAACCTCACGTTTT 59.932 43.478 0.00 0.00 40.32 2.43
346 347 4.440940 GGTGAAATGGAACCTCACGTTTTT 60.441 41.667 0.00 0.00 40.32 1.94
386 387 6.737254 TTTTAGCCTACACTAGAACAATGC 57.263 37.500 0.00 0.00 0.00 3.56
387 388 5.677319 TTAGCCTACACTAGAACAATGCT 57.323 39.130 0.00 0.00 0.00 3.79
388 389 4.130286 AGCCTACACTAGAACAATGCTC 57.870 45.455 0.00 0.00 0.00 4.26
389 390 2.860735 GCCTACACTAGAACAATGCTCG 59.139 50.000 0.00 0.00 0.00 5.03
390 391 3.676324 GCCTACACTAGAACAATGCTCGT 60.676 47.826 0.00 0.00 0.00 4.18
391 392 3.859961 CCTACACTAGAACAATGCTCGTG 59.140 47.826 0.00 0.00 35.78 4.35
392 393 2.069273 ACACTAGAACAATGCTCGTGC 58.931 47.619 1.71 1.71 33.74 5.34
401 402 2.251963 TGCTCGTGCATTGCAACG 59.748 55.556 13.94 17.98 45.31 4.10
402 403 2.502510 GCTCGTGCATTGCAACGG 60.503 61.111 23.51 17.77 41.47 4.44
403 404 2.176546 CTCGTGCATTGCAACGGG 59.823 61.111 23.51 19.77 41.47 5.28
404 405 2.281139 TCGTGCATTGCAACGGGA 60.281 55.556 23.51 13.35 41.47 5.14
405 406 1.647545 CTCGTGCATTGCAACGGGAT 61.648 55.000 21.23 0.00 41.47 3.85
406 407 0.391793 TCGTGCATTGCAACGGGATA 60.392 50.000 23.51 9.67 41.47 2.59
407 408 0.248054 CGTGCATTGCAACGGGATAC 60.248 55.000 13.94 0.00 41.47 2.24
408 409 0.808125 GTGCATTGCAACGGGATACA 59.192 50.000 13.94 0.00 41.47 2.29
409 410 1.201181 GTGCATTGCAACGGGATACAA 59.799 47.619 13.94 0.00 41.47 2.41
410 411 1.889170 TGCATTGCAACGGGATACAAA 59.111 42.857 9.33 0.00 34.76 2.83
411 412 2.495270 TGCATTGCAACGGGATACAAAT 59.505 40.909 9.33 0.00 34.76 2.32
412 413 3.696548 TGCATTGCAACGGGATACAAATA 59.303 39.130 9.33 0.00 34.76 1.40
413 414 4.340666 TGCATTGCAACGGGATACAAATAT 59.659 37.500 9.33 0.00 34.76 1.28
414 415 5.163468 TGCATTGCAACGGGATACAAATATT 60.163 36.000 9.33 0.00 34.76 1.28
415 416 5.402270 GCATTGCAACGGGATACAAATATTC 59.598 40.000 0.00 0.00 39.74 1.75
416 417 6.735694 GCATTGCAACGGGATACAAATATTCT 60.736 38.462 0.00 0.00 39.74 2.40
417 418 7.521423 GCATTGCAACGGGATACAAATATTCTA 60.521 37.037 0.00 0.00 39.74 2.10
418 419 7.867305 TTGCAACGGGATACAAATATTCTAA 57.133 32.000 0.00 0.00 39.74 2.10
419 420 8.458573 TTGCAACGGGATACAAATATTCTAAT 57.541 30.769 0.00 0.00 39.74 1.73
420 421 9.562408 TTGCAACGGGATACAAATATTCTAATA 57.438 29.630 0.00 0.00 39.74 0.98
421 422 8.995220 TGCAACGGGATACAAATATTCTAATAC 58.005 33.333 0.00 0.00 39.74 1.89
422 423 8.166706 GCAACGGGATACAAATATTCTAATACG 58.833 37.037 0.00 0.00 39.74 3.06
423 424 7.823149 ACGGGATACAAATATTCTAATACGC 57.177 36.000 0.00 0.00 39.74 4.42
424 425 7.609056 ACGGGATACAAATATTCTAATACGCT 58.391 34.615 0.00 0.00 39.74 5.07
425 426 8.742777 ACGGGATACAAATATTCTAATACGCTA 58.257 33.333 0.00 0.00 39.74 4.26
426 427 9.234384 CGGGATACAAATATTCTAATACGCTAG 57.766 37.037 0.00 0.00 39.74 3.42
439 440 9.472361 TTCTAATACGCTAGATTGTGATTTACC 57.528 33.333 0.00 0.00 0.00 2.85
440 441 8.857098 TCTAATACGCTAGATTGTGATTTACCT 58.143 33.333 0.00 0.00 0.00 3.08
441 442 7.948278 AATACGCTAGATTGTGATTTACCTC 57.052 36.000 0.00 0.00 0.00 3.85
490 491 5.964958 AATGTTCATCAAATTCTGACCGT 57.035 34.783 0.00 0.00 36.69 4.83
491 492 4.747540 TGTTCATCAAATTCTGACCGTG 57.252 40.909 0.00 0.00 36.69 4.94
492 493 4.384940 TGTTCATCAAATTCTGACCGTGA 58.615 39.130 0.00 0.00 36.69 4.35
493 494 4.819088 TGTTCATCAAATTCTGACCGTGAA 59.181 37.500 0.00 0.00 36.69 3.18
494 495 5.473162 TGTTCATCAAATTCTGACCGTGAAT 59.527 36.000 0.00 0.00 34.60 2.57
495 496 6.016360 TGTTCATCAAATTCTGACCGTGAATT 60.016 34.615 0.00 0.00 43.44 2.17
496 497 7.174080 TGTTCATCAAATTCTGACCGTGAATTA 59.826 33.333 0.00 0.00 41.54 1.40
497 498 7.072177 TCATCAAATTCTGACCGTGAATTAC 57.928 36.000 0.00 0.00 41.54 1.89
498 499 5.873179 TCAAATTCTGACCGTGAATTACC 57.127 39.130 0.00 0.00 41.54 2.85
499 500 5.556915 TCAAATTCTGACCGTGAATTACCT 58.443 37.500 0.00 0.00 41.54 3.08
500 501 6.001460 TCAAATTCTGACCGTGAATTACCTT 58.999 36.000 0.00 0.00 41.54 3.50
501 502 7.162761 TCAAATTCTGACCGTGAATTACCTTA 58.837 34.615 0.00 0.00 41.54 2.69
502 503 7.827236 TCAAATTCTGACCGTGAATTACCTTAT 59.173 33.333 0.00 0.00 41.54 1.73
503 504 9.104965 CAAATTCTGACCGTGAATTACCTTATA 57.895 33.333 0.00 0.00 41.54 0.98
504 505 9.847224 AAATTCTGACCGTGAATTACCTTATAT 57.153 29.630 0.00 0.00 41.54 0.86
505 506 9.847224 AATTCTGACCGTGAATTACCTTATATT 57.153 29.630 0.00 0.00 40.88 1.28
506 507 9.847224 ATTCTGACCGTGAATTACCTTATATTT 57.153 29.630 0.00 0.00 30.84 1.40
507 508 8.882415 TCTGACCGTGAATTACCTTATATTTC 57.118 34.615 0.00 0.00 0.00 2.17
508 509 7.650504 TCTGACCGTGAATTACCTTATATTTCG 59.349 37.037 0.00 0.00 0.00 3.46
509 510 7.490840 TGACCGTGAATTACCTTATATTTCGA 58.509 34.615 0.00 0.00 0.00 3.71
510 511 8.145767 TGACCGTGAATTACCTTATATTTCGAT 58.854 33.333 0.00 0.00 0.00 3.59
511 512 8.897872 ACCGTGAATTACCTTATATTTCGATT 57.102 30.769 0.00 0.00 0.00 3.34
512 513 9.985730 ACCGTGAATTACCTTATATTTCGATTA 57.014 29.630 0.00 0.00 0.00 1.75
538 539 8.679344 ATTAAAATGGAATTGGGTTAGAAGGT 57.321 30.769 0.00 0.00 36.10 3.50
539 540 9.777008 ATTAAAATGGAATTGGGTTAGAAGGTA 57.223 29.630 0.00 0.00 36.10 3.08
540 541 9.603189 TTAAAATGGAATTGGGTTAGAAGGTAA 57.397 29.630 0.00 0.00 36.10 2.85
541 542 7.718334 AAATGGAATTGGGTTAGAAGGTAAG 57.282 36.000 0.00 0.00 36.10 2.34
542 543 5.853572 TGGAATTGGGTTAGAAGGTAAGT 57.146 39.130 0.00 0.00 0.00 2.24
543 544 6.956102 TGGAATTGGGTTAGAAGGTAAGTA 57.044 37.500 0.00 0.00 0.00 2.24
544 545 7.332433 TGGAATTGGGTTAGAAGGTAAGTAA 57.668 36.000 0.00 0.00 0.00 2.24
545 546 7.935405 TGGAATTGGGTTAGAAGGTAAGTAAT 58.065 34.615 0.00 0.00 0.00 1.89
546 547 8.395605 TGGAATTGGGTTAGAAGGTAAGTAATT 58.604 33.333 0.00 0.00 0.00 1.40
547 548 9.910267 GGAATTGGGTTAGAAGGTAAGTAATTA 57.090 33.333 0.00 0.00 0.00 1.40
550 551 9.916360 ATTGGGTTAGAAGGTAAGTAATTAAGG 57.084 33.333 0.00 0.00 0.00 2.69
551 552 7.864770 TGGGTTAGAAGGTAAGTAATTAAGGG 58.135 38.462 0.00 0.00 0.00 3.95
552 553 7.092309 TGGGTTAGAAGGTAAGTAATTAAGGGG 60.092 40.741 0.00 0.00 0.00 4.79
553 554 7.127801 GGGTTAGAAGGTAAGTAATTAAGGGGA 59.872 40.741 0.00 0.00 0.00 4.81
554 555 8.551440 GGTTAGAAGGTAAGTAATTAAGGGGAA 58.449 37.037 0.00 0.00 0.00 3.97
587 588 8.671384 TTATATTTATGGAAGGTTGGACGAAG 57.329 34.615 0.00 0.00 0.00 3.79
588 589 3.343941 TTATGGAAGGTTGGACGAAGG 57.656 47.619 0.00 0.00 0.00 3.46
589 590 0.328258 ATGGAAGGTTGGACGAAGGG 59.672 55.000 0.00 0.00 0.00 3.95
590 591 0.765135 TGGAAGGTTGGACGAAGGGA 60.765 55.000 0.00 0.00 0.00 4.20
591 592 0.618981 GGAAGGTTGGACGAAGGGAT 59.381 55.000 0.00 0.00 0.00 3.85
592 593 1.679032 GGAAGGTTGGACGAAGGGATG 60.679 57.143 0.00 0.00 0.00 3.51
593 594 1.278127 GAAGGTTGGACGAAGGGATGA 59.722 52.381 0.00 0.00 0.00 2.92
594 595 1.584724 AGGTTGGACGAAGGGATGAT 58.415 50.000 0.00 0.00 0.00 2.45
595 596 1.210478 AGGTTGGACGAAGGGATGATG 59.790 52.381 0.00 0.00 0.00 3.07
596 597 1.209504 GGTTGGACGAAGGGATGATGA 59.790 52.381 0.00 0.00 0.00 2.92
597 598 2.555199 GTTGGACGAAGGGATGATGAG 58.445 52.381 0.00 0.00 0.00 2.90
598 599 2.159179 TGGACGAAGGGATGATGAGA 57.841 50.000 0.00 0.00 0.00 3.27
599 600 2.466846 TGGACGAAGGGATGATGAGAA 58.533 47.619 0.00 0.00 0.00 2.87
600 601 2.432146 TGGACGAAGGGATGATGAGAAG 59.568 50.000 0.00 0.00 0.00 2.85
601 602 2.478831 GACGAAGGGATGATGAGAAGC 58.521 52.381 0.00 0.00 0.00 3.86
602 603 1.833630 ACGAAGGGATGATGAGAAGCA 59.166 47.619 0.00 0.00 0.00 3.91
603 604 2.237143 ACGAAGGGATGATGAGAAGCAA 59.763 45.455 0.00 0.00 0.00 3.91
604 605 2.871022 CGAAGGGATGATGAGAAGCAAG 59.129 50.000 0.00 0.00 0.00 4.01
605 606 3.212685 GAAGGGATGATGAGAAGCAAGG 58.787 50.000 0.00 0.00 0.00 3.61
606 607 2.203584 AGGGATGATGAGAAGCAAGGT 58.796 47.619 0.00 0.00 0.00 3.50
607 608 2.092538 AGGGATGATGAGAAGCAAGGTG 60.093 50.000 0.00 0.00 0.00 4.00
608 609 2.092753 GGGATGATGAGAAGCAAGGTGA 60.093 50.000 0.00 0.00 0.00 4.02
609 610 3.614092 GGATGATGAGAAGCAAGGTGAA 58.386 45.455 0.00 0.00 0.00 3.18
610 611 4.012374 GGATGATGAGAAGCAAGGTGAAA 58.988 43.478 0.00 0.00 0.00 2.69
611 612 4.643784 GGATGATGAGAAGCAAGGTGAAAT 59.356 41.667 0.00 0.00 0.00 2.17
612 613 5.450137 GGATGATGAGAAGCAAGGTGAAATG 60.450 44.000 0.00 0.00 0.00 2.32
613 614 4.654915 TGATGAGAAGCAAGGTGAAATGA 58.345 39.130 0.00 0.00 0.00 2.57
614 615 5.072055 TGATGAGAAGCAAGGTGAAATGAA 58.928 37.500 0.00 0.00 0.00 2.57
615 616 5.535783 TGATGAGAAGCAAGGTGAAATGAAA 59.464 36.000 0.00 0.00 0.00 2.69
616 617 5.186996 TGAGAAGCAAGGTGAAATGAAAC 57.813 39.130 0.00 0.00 0.00 2.78
617 618 4.037923 TGAGAAGCAAGGTGAAATGAAACC 59.962 41.667 0.00 0.00 36.66 3.27
626 627 6.459670 AGGTGAAATGAAACCTTACGTTTT 57.540 33.333 0.00 0.00 44.63 2.43
627 628 6.869695 AGGTGAAATGAAACCTTACGTTTTT 58.130 32.000 0.00 0.00 44.63 1.94
680 681 0.824759 GTCCTACCGCTGATTCACCT 59.175 55.000 0.00 0.00 0.00 4.00
826 827 2.227968 CTTTTCTTCGCGTCGCCCTG 62.228 60.000 12.44 1.57 0.00 4.45
864 865 3.297620 GCCACCCAGCACCACAAG 61.298 66.667 0.00 0.00 0.00 3.16
1135 1144 2.264794 CACGGAGGGTACAGTGGC 59.735 66.667 0.00 0.00 33.66 5.01
1216 1225 4.077184 CACCGCAACCCTAGCCGA 62.077 66.667 0.00 0.00 0.00 5.54
1394 1403 1.074423 TCGGAAGAGTCTCGTGGGT 59.926 57.895 0.00 0.00 34.84 4.51
1396 1405 1.524863 CGGAAGAGTCTCGTGGGTGT 61.525 60.000 0.00 0.00 0.00 4.16
1434 1443 0.314935 CCTGGTGTGAATGGTGTTGC 59.685 55.000 0.00 0.00 0.00 4.17
1525 1534 1.073923 AGGAATGGTTCAAAGCCTCGT 59.926 47.619 0.00 0.00 0.00 4.18
1535 1544 2.154462 CAAAGCCTCGTGTCCAAGATT 58.846 47.619 0.00 0.00 0.00 2.40
1539 1548 1.401539 GCCTCGTGTCCAAGATTTTGC 60.402 52.381 0.00 0.00 32.79 3.68
1540 1549 1.135972 CCTCGTGTCCAAGATTTTGCG 60.136 52.381 0.00 0.00 32.79 4.85
1542 1551 1.798223 TCGTGTCCAAGATTTTGCGAG 59.202 47.619 0.00 0.00 32.79 5.03
1543 1552 1.531149 CGTGTCCAAGATTTTGCGAGT 59.469 47.619 0.00 0.00 32.79 4.18
1658 1670 4.973168 TGTTGAAAGATTACAGGAGCACT 58.027 39.130 0.00 0.00 0.00 4.40
1771 1783 3.057019 TGACGAGGAAGAAATTGTGTCG 58.943 45.455 0.00 0.00 0.00 4.35
1774 1789 3.741344 ACGAGGAAGAAATTGTGTCGAAG 59.259 43.478 0.00 0.00 0.00 3.79
1775 1790 3.987868 CGAGGAAGAAATTGTGTCGAAGA 59.012 43.478 0.00 0.00 0.00 2.87
1776 1791 4.447724 CGAGGAAGAAATTGTGTCGAAGAA 59.552 41.667 0.00 0.00 39.69 2.52
1817 1832 1.029681 ACAAGGGTCCGTGAAAAAGC 58.970 50.000 9.78 0.00 0.00 3.51
1876 1891 2.294791 AGACTCAAACTCCTCAGTGTCG 59.705 50.000 0.00 0.00 30.55 4.35
2639 2681 2.223923 GCTCTCTCGTCAATATGGCAGT 60.224 50.000 0.00 0.00 0.00 4.40
2729 2771 6.639671 TGTTTTCAAATGTTGTGCTGTTAC 57.360 33.333 0.00 0.00 0.00 2.50
3197 3271 8.466617 TTCTCTCCTCAGGTACAATAGATTAC 57.533 38.462 0.00 0.00 0.00 1.89
3362 3436 7.029563 CCTTTTACCTGTCTGAACATATTTGC 58.970 38.462 0.00 0.00 34.13 3.68
3715 3791 2.100916 GCTGCAGATGCCAATCTTCAAT 59.899 45.455 20.43 0.00 41.43 2.57
3716 3792 3.430374 GCTGCAGATGCCAATCTTCAATT 60.430 43.478 20.43 0.00 41.43 2.32
3717 3793 4.202080 GCTGCAGATGCCAATCTTCAATTA 60.202 41.667 20.43 0.00 41.43 1.40
3718 3794 5.680408 GCTGCAGATGCCAATCTTCAATTAA 60.680 40.000 20.43 0.00 41.43 1.40
3729 3805 8.250332 GCCAATCTTCAATTAACATGAACCTAA 58.750 33.333 0.00 0.00 33.47 2.69
3740 3816 4.603131 ACATGAACCTAATGGAAGTGCAT 58.397 39.130 0.00 0.00 37.04 3.96
3753 3829 2.071778 AGTGCATGTGTTCCAAGGTT 57.928 45.000 0.00 0.00 0.00 3.50
3853 3936 5.189180 GGATGCATAATCAGAAGGGGATAC 58.811 45.833 0.00 0.00 36.98 2.24
3935 4018 5.808366 ACTTCTGGTCACAATGAACTCTA 57.192 39.130 0.00 0.00 34.53 2.43
3936 4019 5.542779 ACTTCTGGTCACAATGAACTCTAC 58.457 41.667 0.00 0.00 34.53 2.59
3937 4020 5.305644 ACTTCTGGTCACAATGAACTCTACT 59.694 40.000 0.00 0.00 34.53 2.57
3940 4023 7.297936 TCTGGTCACAATGAACTCTACTTTA 57.702 36.000 0.00 0.00 34.53 1.85
3941 4024 7.152645 TCTGGTCACAATGAACTCTACTTTAC 58.847 38.462 0.00 0.00 34.53 2.01
4460 4630 8.400947 GCTTGATATGTTCATGTTGTCTGTTAT 58.599 33.333 0.00 0.00 33.34 1.89
4510 4680 7.173047 ACATAATGAATGCAAACCAAAAAGGAC 59.827 33.333 0.00 0.00 38.31 3.85
4683 4853 9.260002 GAATTTGAGAGCAAAGTTTGGAAATTA 57.740 29.630 17.11 0.00 46.27 1.40
4703 4931 8.485578 AAATTAACTTCCCATGACCTTTGTTA 57.514 30.769 0.00 0.00 0.00 2.41
4864 5115 4.922719 TGTGTTGATTACGTTTTGGGAAC 58.077 39.130 0.00 0.00 0.00 3.62
4921 5172 6.037726 ACAACCGACCTAAATTTGTGAAAAC 58.962 36.000 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.201726 CGTGTTCGCTTGGATCAAAAT 57.798 42.857 0.00 0.00 0.00 1.82
2 3 2.679355 CGTGTTCGCTTGGATCAAAA 57.321 45.000 0.00 0.00 0.00 2.44
14 15 0.246374 CTTTCGTCATCGCGTGTTCG 60.246 55.000 5.77 12.72 40.37 3.95
15 16 1.057636 TCTTTCGTCATCGCGTGTTC 58.942 50.000 5.77 1.99 36.96 3.18
16 17 1.060713 CTCTTTCGTCATCGCGTGTT 58.939 50.000 5.77 0.00 36.96 3.32
17 18 1.344942 GCTCTTTCGTCATCGCGTGT 61.345 55.000 5.77 0.00 36.96 4.49
18 19 1.341802 GCTCTTTCGTCATCGCGTG 59.658 57.895 5.77 3.96 36.96 5.34
19 20 2.152699 CGCTCTTTCGTCATCGCGT 61.153 57.895 5.77 0.00 36.28 6.01
20 21 2.610308 CGCTCTTTCGTCATCGCG 59.390 61.111 0.00 0.00 36.96 5.87
21 22 2.517450 CCCGCTCTTTCGTCATCGC 61.517 63.158 0.00 0.00 36.96 4.58
22 23 2.517450 GCCCGCTCTTTCGTCATCG 61.517 63.158 0.00 0.00 38.55 3.84
23 24 2.517450 CGCCCGCTCTTTCGTCATC 61.517 63.158 0.00 0.00 0.00 2.92
24 25 2.509336 CGCCCGCTCTTTCGTCAT 60.509 61.111 0.00 0.00 0.00 3.06
25 26 3.986006 ACGCCCGCTCTTTCGTCA 61.986 61.111 0.00 0.00 0.00 4.35
26 27 3.479269 CACGCCCGCTCTTTCGTC 61.479 66.667 0.00 0.00 32.38 4.20
27 28 3.802418 AACACGCCCGCTCTTTCGT 62.802 57.895 0.00 0.00 35.35 3.85
28 29 3.041940 AACACGCCCGCTCTTTCG 61.042 61.111 0.00 0.00 0.00 3.46
29 30 2.556287 CAACACGCCCGCTCTTTC 59.444 61.111 0.00 0.00 0.00 2.62
30 31 2.978010 CCAACACGCCCGCTCTTT 60.978 61.111 0.00 0.00 0.00 2.52
31 32 3.936203 TCCAACACGCCCGCTCTT 61.936 61.111 0.00 0.00 0.00 2.85
32 33 4.681978 GTCCAACACGCCCGCTCT 62.682 66.667 0.00 0.00 0.00 4.09
33 34 4.980805 TGTCCAACACGCCCGCTC 62.981 66.667 0.00 0.00 0.00 5.03
42 43 1.444250 GTCGACCCTGTGTCCAACA 59.556 57.895 3.51 0.00 41.18 3.33
43 44 1.663702 CGTCGACCCTGTGTCCAAC 60.664 63.158 10.58 0.00 41.18 3.77
44 45 2.732016 CGTCGACCCTGTGTCCAA 59.268 61.111 10.58 0.00 41.18 3.53
45 46 3.299977 CCGTCGACCCTGTGTCCA 61.300 66.667 10.58 0.00 41.18 4.02
46 47 2.987547 TCCGTCGACCCTGTGTCC 60.988 66.667 10.58 0.00 41.18 4.02
47 48 1.803366 AACTCCGTCGACCCTGTGTC 61.803 60.000 10.58 0.00 40.81 3.67
48 49 1.831286 AACTCCGTCGACCCTGTGT 60.831 57.895 10.58 3.31 0.00 3.72
49 50 1.372997 CAACTCCGTCGACCCTGTG 60.373 63.158 10.58 2.68 0.00 3.66
50 51 3.048602 CAACTCCGTCGACCCTGT 58.951 61.111 10.58 3.03 0.00 4.00
51 52 2.432628 GCAACTCCGTCGACCCTG 60.433 66.667 10.58 2.36 0.00 4.45
52 53 2.600769 AGCAACTCCGTCGACCCT 60.601 61.111 10.58 0.00 0.00 4.34
53 54 2.432628 CAGCAACTCCGTCGACCC 60.433 66.667 10.58 0.00 0.00 4.46
54 55 3.112709 GCAGCAACTCCGTCGACC 61.113 66.667 10.58 0.00 0.00 4.79
55 56 2.049063 AGCAGCAACTCCGTCGAC 60.049 61.111 5.18 5.18 0.00 4.20
56 57 2.258591 GAGCAGCAACTCCGTCGA 59.741 61.111 0.00 0.00 0.00 4.20
57 58 2.091112 CAGAGCAGCAACTCCGTCG 61.091 63.158 0.00 0.00 37.39 5.12
58 59 1.005630 ACAGAGCAGCAACTCCGTC 60.006 57.895 0.00 0.00 37.39 4.79
59 60 1.005630 GACAGAGCAGCAACTCCGT 60.006 57.895 0.00 0.00 37.39 4.69
60 61 0.601046 TTGACAGAGCAGCAACTCCG 60.601 55.000 0.00 0.00 37.39 4.63
61 62 1.818642 ATTGACAGAGCAGCAACTCC 58.181 50.000 0.00 0.00 37.39 3.85
62 63 3.911661 AAATTGACAGAGCAGCAACTC 57.088 42.857 0.00 0.00 36.91 3.01
63 64 4.660789 AAAAATTGACAGAGCAGCAACT 57.339 36.364 0.00 0.00 0.00 3.16
183 184 9.173021 ACGGTCAGAATTTGATGAACATTTATA 57.827 29.630 5.49 0.00 38.29 0.98
184 185 7.970061 CACGGTCAGAATTTGATGAACATTTAT 59.030 33.333 5.49 0.00 38.29 1.40
185 186 7.174080 TCACGGTCAGAATTTGATGAACATTTA 59.826 33.333 5.49 0.00 38.29 1.40
186 187 6.016360 TCACGGTCAGAATTTGATGAACATTT 60.016 34.615 5.49 0.00 38.29 2.32
187 188 5.473162 TCACGGTCAGAATTTGATGAACATT 59.527 36.000 5.49 0.00 38.29 2.71
188 189 5.003160 TCACGGTCAGAATTTGATGAACAT 58.997 37.500 5.49 0.00 38.29 2.71
189 190 4.384940 TCACGGTCAGAATTTGATGAACA 58.615 39.130 5.49 0.00 38.29 3.18
190 191 5.356882 TTCACGGTCAGAATTTGATGAAC 57.643 39.130 0.00 0.00 38.29 3.18
191 192 6.573664 AATTCACGGTCAGAATTTGATGAA 57.426 33.333 1.75 0.00 41.54 2.57
192 193 6.093495 GGTAATTCACGGTCAGAATTTGATGA 59.907 38.462 10.52 0.00 41.54 2.92
193 194 6.094048 AGGTAATTCACGGTCAGAATTTGATG 59.906 38.462 10.52 0.00 41.54 3.07
194 195 6.180472 AGGTAATTCACGGTCAGAATTTGAT 58.820 36.000 10.52 0.00 41.54 2.57
195 196 5.556915 AGGTAATTCACGGTCAGAATTTGA 58.443 37.500 10.52 0.00 41.54 2.69
196 197 5.880054 AGGTAATTCACGGTCAGAATTTG 57.120 39.130 10.52 0.00 41.54 2.32
197 198 9.847224 ATATAAGGTAATTCACGGTCAGAATTT 57.153 29.630 10.52 0.00 41.54 1.82
198 199 9.847224 AATATAAGGTAATTCACGGTCAGAATT 57.153 29.630 10.22 10.22 45.05 2.17
199 200 9.847224 AAATATAAGGTAATTCACGGTCAGAAT 57.153 29.630 0.00 0.00 37.30 2.40
200 201 9.675464 AAAATATAAGGTAATTCACGGTCAGAA 57.325 29.630 0.00 0.00 0.00 3.02
201 202 9.104965 CAAAATATAAGGTAATTCACGGTCAGA 57.895 33.333 0.00 0.00 0.00 3.27
202 203 9.104965 TCAAAATATAAGGTAATTCACGGTCAG 57.895 33.333 0.00 0.00 0.00 3.51
203 204 9.621629 ATCAAAATATAAGGTAATTCACGGTCA 57.378 29.630 0.00 0.00 0.00 4.02
245 246 9.703677 CCCCTTAATTACTTACCTTTTAATCCA 57.296 33.333 0.00 0.00 0.00 3.41
246 247 9.925545 TCCCCTTAATTACTTACCTTTTAATCC 57.074 33.333 0.00 0.00 0.00 3.01
278 279 9.839817 TCGTCCAACCTTTCATGAATATAATAA 57.160 29.630 9.40 0.00 0.00 1.40
279 280 9.839817 TTCGTCCAACCTTTCATGAATATAATA 57.160 29.630 9.40 0.00 0.00 0.98
280 281 8.746052 TTCGTCCAACCTTTCATGAATATAAT 57.254 30.769 9.40 0.00 0.00 1.28
281 282 7.282224 CCTTCGTCCAACCTTTCATGAATATAA 59.718 37.037 9.40 0.00 0.00 0.98
282 283 6.765989 CCTTCGTCCAACCTTTCATGAATATA 59.234 38.462 9.40 0.00 0.00 0.86
283 284 5.590259 CCTTCGTCCAACCTTTCATGAATAT 59.410 40.000 9.40 0.00 0.00 1.28
284 285 4.941263 CCTTCGTCCAACCTTTCATGAATA 59.059 41.667 9.40 0.00 0.00 1.75
285 286 3.758554 CCTTCGTCCAACCTTTCATGAAT 59.241 43.478 9.40 0.00 0.00 2.57
286 287 3.146066 CCTTCGTCCAACCTTTCATGAA 58.854 45.455 3.38 3.38 0.00 2.57
287 288 2.552155 CCCTTCGTCCAACCTTTCATGA 60.552 50.000 0.00 0.00 0.00 3.07
288 289 1.812571 CCCTTCGTCCAACCTTTCATG 59.187 52.381 0.00 0.00 0.00 3.07
289 290 1.702957 TCCCTTCGTCCAACCTTTCAT 59.297 47.619 0.00 0.00 0.00 2.57
290 291 1.133363 TCCCTTCGTCCAACCTTTCA 58.867 50.000 0.00 0.00 0.00 2.69
291 292 2.084546 CATCCCTTCGTCCAACCTTTC 58.915 52.381 0.00 0.00 0.00 2.62
292 293 1.702957 TCATCCCTTCGTCCAACCTTT 59.297 47.619 0.00 0.00 0.00 3.11
293 294 1.358152 TCATCCCTTCGTCCAACCTT 58.642 50.000 0.00 0.00 0.00 3.50
294 295 1.210478 CATCATCCCTTCGTCCAACCT 59.790 52.381 0.00 0.00 0.00 3.50
295 296 1.668419 CATCATCCCTTCGTCCAACC 58.332 55.000 0.00 0.00 0.00 3.77
296 297 1.668419 CCATCATCCCTTCGTCCAAC 58.332 55.000 0.00 0.00 0.00 3.77
297 298 0.546122 CCCATCATCCCTTCGTCCAA 59.454 55.000 0.00 0.00 0.00 3.53
298 299 0.326143 TCCCATCATCCCTTCGTCCA 60.326 55.000 0.00 0.00 0.00 4.02
299 300 0.837272 TTCCCATCATCCCTTCGTCC 59.163 55.000 0.00 0.00 0.00 4.79
300 301 1.811941 GCTTCCCATCATCCCTTCGTC 60.812 57.143 0.00 0.00 0.00 4.20
301 302 0.181350 GCTTCCCATCATCCCTTCGT 59.819 55.000 0.00 0.00 0.00 3.85
302 303 0.181114 TGCTTCCCATCATCCCTTCG 59.819 55.000 0.00 0.00 0.00 3.79
303 304 2.305009 CTTGCTTCCCATCATCCCTTC 58.695 52.381 0.00 0.00 0.00 3.46
304 305 1.063417 CCTTGCTTCCCATCATCCCTT 60.063 52.381 0.00 0.00 0.00 3.95
305 306 0.554792 CCTTGCTTCCCATCATCCCT 59.445 55.000 0.00 0.00 0.00 4.20
306 307 0.259938 ACCTTGCTTCCCATCATCCC 59.740 55.000 0.00 0.00 0.00 3.85
307 308 1.064463 TCACCTTGCTTCCCATCATCC 60.064 52.381 0.00 0.00 0.00 3.51
308 309 2.425143 TCACCTTGCTTCCCATCATC 57.575 50.000 0.00 0.00 0.00 2.92
309 310 2.905415 TTCACCTTGCTTCCCATCAT 57.095 45.000 0.00 0.00 0.00 2.45
310 311 2.673775 TTTCACCTTGCTTCCCATCA 57.326 45.000 0.00 0.00 0.00 3.07
311 312 2.167075 CCATTTCACCTTGCTTCCCATC 59.833 50.000 0.00 0.00 0.00 3.51
312 313 2.181975 CCATTTCACCTTGCTTCCCAT 58.818 47.619 0.00 0.00 0.00 4.00
313 314 1.146774 TCCATTTCACCTTGCTTCCCA 59.853 47.619 0.00 0.00 0.00 4.37
314 315 1.923356 TCCATTTCACCTTGCTTCCC 58.077 50.000 0.00 0.00 0.00 3.97
315 316 2.029020 GGTTCCATTTCACCTTGCTTCC 60.029 50.000 0.00 0.00 0.00 3.46
316 317 2.893489 AGGTTCCATTTCACCTTGCTTC 59.107 45.455 0.00 0.00 40.85 3.86
317 318 2.893489 GAGGTTCCATTTCACCTTGCTT 59.107 45.455 0.00 0.00 43.94 3.91
318 319 2.158475 TGAGGTTCCATTTCACCTTGCT 60.158 45.455 0.00 0.00 43.94 3.91
319 320 2.029918 GTGAGGTTCCATTTCACCTTGC 60.030 50.000 0.00 0.00 43.94 4.01
320 321 2.226437 CGTGAGGTTCCATTTCACCTTG 59.774 50.000 0.00 0.00 43.94 3.61
321 322 2.158667 ACGTGAGGTTCCATTTCACCTT 60.159 45.455 0.00 0.00 43.94 3.50
322 323 1.420138 ACGTGAGGTTCCATTTCACCT 59.580 47.619 0.00 0.00 46.78 4.00
323 324 1.892209 ACGTGAGGTTCCATTTCACC 58.108 50.000 0.00 0.00 38.34 4.02
324 325 3.982576 AAACGTGAGGTTCCATTTCAC 57.017 42.857 0.00 0.00 34.69 3.18
325 326 4.993029 AAAAACGTGAGGTTCCATTTCA 57.007 36.364 0.00 0.00 42.68 2.69
362 363 6.940298 AGCATTGTTCTAGTGTAGGCTAAAAA 59.060 34.615 0.00 0.00 0.00 1.94
363 364 6.472887 AGCATTGTTCTAGTGTAGGCTAAAA 58.527 36.000 0.00 0.00 0.00 1.52
364 365 6.049955 AGCATTGTTCTAGTGTAGGCTAAA 57.950 37.500 0.00 0.00 0.00 1.85
365 366 5.661458 GAGCATTGTTCTAGTGTAGGCTAA 58.339 41.667 0.00 0.00 0.00 3.09
366 367 4.202020 CGAGCATTGTTCTAGTGTAGGCTA 60.202 45.833 0.00 0.00 0.00 3.93
367 368 3.429547 CGAGCATTGTTCTAGTGTAGGCT 60.430 47.826 0.00 0.00 0.00 4.58
368 369 2.860735 CGAGCATTGTTCTAGTGTAGGC 59.139 50.000 0.00 0.00 0.00 3.93
369 370 3.859961 CACGAGCATTGTTCTAGTGTAGG 59.140 47.826 0.00 0.00 34.09 3.18
370 371 3.304559 GCACGAGCATTGTTCTAGTGTAG 59.695 47.826 0.00 0.00 38.74 2.74
371 372 3.250744 GCACGAGCATTGTTCTAGTGTA 58.749 45.455 0.00 0.00 38.74 2.90
372 373 2.069273 GCACGAGCATTGTTCTAGTGT 58.931 47.619 0.00 0.00 38.74 3.55
373 374 2.795121 GCACGAGCATTGTTCTAGTG 57.205 50.000 0.00 2.32 41.58 2.74
385 386 2.502510 CCGTTGCAATGCACGAGC 60.503 61.111 23.91 0.00 38.71 5.03
386 387 1.647545 ATCCCGTTGCAATGCACGAG 61.648 55.000 23.91 15.31 38.71 4.18
387 388 0.391793 TATCCCGTTGCAATGCACGA 60.392 50.000 23.91 12.13 38.71 4.35
388 389 0.248054 GTATCCCGTTGCAATGCACG 60.248 55.000 7.72 14.71 38.71 5.34
389 390 0.808125 TGTATCCCGTTGCAATGCAC 59.192 50.000 7.72 2.39 38.71 4.57
390 391 1.539157 TTGTATCCCGTTGCAATGCA 58.461 45.000 13.42 2.72 36.47 3.96
391 392 2.645730 TTTGTATCCCGTTGCAATGC 57.354 45.000 13.42 0.00 0.00 3.56
392 393 6.738114 AGAATATTTGTATCCCGTTGCAATG 58.262 36.000 11.90 11.90 0.00 2.82
393 394 6.959639 AGAATATTTGTATCCCGTTGCAAT 57.040 33.333 0.59 0.00 0.00 3.56
394 395 7.867305 TTAGAATATTTGTATCCCGTTGCAA 57.133 32.000 0.00 0.00 0.00 4.08
395 396 8.995220 GTATTAGAATATTTGTATCCCGTTGCA 58.005 33.333 0.00 0.00 0.00 4.08
396 397 8.166706 CGTATTAGAATATTTGTATCCCGTTGC 58.833 37.037 0.00 0.00 0.00 4.17
397 398 8.166706 GCGTATTAGAATATTTGTATCCCGTTG 58.833 37.037 0.00 0.00 0.00 4.10
398 399 8.092687 AGCGTATTAGAATATTTGTATCCCGTT 58.907 33.333 0.00 0.00 0.00 4.44
399 400 7.609056 AGCGTATTAGAATATTTGTATCCCGT 58.391 34.615 0.00 0.00 0.00 5.28
400 401 9.234384 CTAGCGTATTAGAATATTTGTATCCCG 57.766 37.037 0.00 0.00 0.00 5.14
413 414 9.472361 GGTAAATCACAATCTAGCGTATTAGAA 57.528 33.333 0.00 0.00 33.64 2.10
414 415 8.857098 AGGTAAATCACAATCTAGCGTATTAGA 58.143 33.333 0.00 0.00 34.38 2.10
415 416 9.130312 GAGGTAAATCACAATCTAGCGTATTAG 57.870 37.037 0.00 0.00 0.00 1.73
416 417 8.857098 AGAGGTAAATCACAATCTAGCGTATTA 58.143 33.333 0.00 0.00 0.00 0.98
417 418 7.727181 AGAGGTAAATCACAATCTAGCGTATT 58.273 34.615 0.00 0.00 0.00 1.89
418 419 7.014326 TGAGAGGTAAATCACAATCTAGCGTAT 59.986 37.037 0.00 0.00 0.00 3.06
419 420 6.320418 TGAGAGGTAAATCACAATCTAGCGTA 59.680 38.462 0.00 0.00 0.00 4.42
420 421 5.127194 TGAGAGGTAAATCACAATCTAGCGT 59.873 40.000 0.00 0.00 0.00 5.07
421 422 5.592054 TGAGAGGTAAATCACAATCTAGCG 58.408 41.667 0.00 0.00 0.00 4.26
422 423 9.547753 TTATTGAGAGGTAAATCACAATCTAGC 57.452 33.333 3.24 0.00 39.90 3.42
464 465 9.173021 ACGGTCAGAATTTGATGAACATTTATA 57.827 29.630 5.49 0.00 38.29 0.98
471 472 5.356882 TTCACGGTCAGAATTTGATGAAC 57.643 39.130 0.00 0.00 38.29 3.18
482 483 7.650504 CGAAATATAAGGTAATTCACGGTCAGA 59.349 37.037 0.00 0.00 0.00 3.27
483 484 7.650504 TCGAAATATAAGGTAATTCACGGTCAG 59.349 37.037 0.00 0.00 0.00 3.51
484 485 7.490840 TCGAAATATAAGGTAATTCACGGTCA 58.509 34.615 0.00 0.00 0.00 4.02
485 486 7.935338 TCGAAATATAAGGTAATTCACGGTC 57.065 36.000 0.00 0.00 0.00 4.79
486 487 8.897872 AATCGAAATATAAGGTAATTCACGGT 57.102 30.769 0.00 0.00 0.00 4.83
512 513 9.111519 ACCTTCTAACCCAATTCCATTTTAATT 57.888 29.630 0.00 0.00 0.00 1.40
513 514 8.679344 ACCTTCTAACCCAATTCCATTTTAAT 57.321 30.769 0.00 0.00 0.00 1.40
514 515 9.603189 TTACCTTCTAACCCAATTCCATTTTAA 57.397 29.630 0.00 0.00 0.00 1.52
515 516 9.250246 CTTACCTTCTAACCCAATTCCATTTTA 57.750 33.333 0.00 0.00 0.00 1.52
516 517 7.733047 ACTTACCTTCTAACCCAATTCCATTTT 59.267 33.333 0.00 0.00 0.00 1.82
517 518 7.246027 ACTTACCTTCTAACCCAATTCCATTT 58.754 34.615 0.00 0.00 0.00 2.32
518 519 6.800890 ACTTACCTTCTAACCCAATTCCATT 58.199 36.000 0.00 0.00 0.00 3.16
519 520 6.402981 ACTTACCTTCTAACCCAATTCCAT 57.597 37.500 0.00 0.00 0.00 3.41
520 521 5.853572 ACTTACCTTCTAACCCAATTCCA 57.146 39.130 0.00 0.00 0.00 3.53
521 522 8.818622 AATTACTTACCTTCTAACCCAATTCC 57.181 34.615 0.00 0.00 0.00 3.01
524 525 9.916360 CCTTAATTACTTACCTTCTAACCCAAT 57.084 33.333 0.00 0.00 0.00 3.16
525 526 8.330993 CCCTTAATTACTTACCTTCTAACCCAA 58.669 37.037 0.00 0.00 0.00 4.12
526 527 7.092309 CCCCTTAATTACTTACCTTCTAACCCA 60.092 40.741 0.00 0.00 0.00 4.51
527 528 7.127801 TCCCCTTAATTACTTACCTTCTAACCC 59.872 40.741 0.00 0.00 0.00 4.11
528 529 8.094284 TCCCCTTAATTACTTACCTTCTAACC 57.906 38.462 0.00 0.00 0.00 2.85
561 562 9.284968 CTTCGTCCAACCTTCCATAAATATAAT 57.715 33.333 0.00 0.00 0.00 1.28
562 563 7.717875 CCTTCGTCCAACCTTCCATAAATATAA 59.282 37.037 0.00 0.00 0.00 0.98
563 564 7.221450 CCTTCGTCCAACCTTCCATAAATATA 58.779 38.462 0.00 0.00 0.00 0.86
564 565 6.062095 CCTTCGTCCAACCTTCCATAAATAT 58.938 40.000 0.00 0.00 0.00 1.28
565 566 5.433526 CCTTCGTCCAACCTTCCATAAATA 58.566 41.667 0.00 0.00 0.00 1.40
566 567 4.270008 CCTTCGTCCAACCTTCCATAAAT 58.730 43.478 0.00 0.00 0.00 1.40
567 568 3.560453 CCCTTCGTCCAACCTTCCATAAA 60.560 47.826 0.00 0.00 0.00 1.40
568 569 2.026636 CCCTTCGTCCAACCTTCCATAA 60.027 50.000 0.00 0.00 0.00 1.90
569 570 1.557832 CCCTTCGTCCAACCTTCCATA 59.442 52.381 0.00 0.00 0.00 2.74
570 571 0.328258 CCCTTCGTCCAACCTTCCAT 59.672 55.000 0.00 0.00 0.00 3.41
571 572 0.765135 TCCCTTCGTCCAACCTTCCA 60.765 55.000 0.00 0.00 0.00 3.53
572 573 0.618981 ATCCCTTCGTCCAACCTTCC 59.381 55.000 0.00 0.00 0.00 3.46
573 574 1.278127 TCATCCCTTCGTCCAACCTTC 59.722 52.381 0.00 0.00 0.00 3.46
574 575 1.358152 TCATCCCTTCGTCCAACCTT 58.642 50.000 0.00 0.00 0.00 3.50
575 576 1.210478 CATCATCCCTTCGTCCAACCT 59.790 52.381 0.00 0.00 0.00 3.50
576 577 1.209504 TCATCATCCCTTCGTCCAACC 59.790 52.381 0.00 0.00 0.00 3.77
577 578 2.168521 TCTCATCATCCCTTCGTCCAAC 59.831 50.000 0.00 0.00 0.00 3.77
578 579 2.466846 TCTCATCATCCCTTCGTCCAA 58.533 47.619 0.00 0.00 0.00 3.53
579 580 2.159179 TCTCATCATCCCTTCGTCCA 57.841 50.000 0.00 0.00 0.00 4.02
580 581 2.804933 GCTTCTCATCATCCCTTCGTCC 60.805 54.545 0.00 0.00 0.00 4.79
581 582 2.159043 TGCTTCTCATCATCCCTTCGTC 60.159 50.000 0.00 0.00 0.00 4.20
582 583 1.833630 TGCTTCTCATCATCCCTTCGT 59.166 47.619 0.00 0.00 0.00 3.85
583 584 2.609427 TGCTTCTCATCATCCCTTCG 57.391 50.000 0.00 0.00 0.00 3.79
584 585 3.212685 CCTTGCTTCTCATCATCCCTTC 58.787 50.000 0.00 0.00 0.00 3.46
585 586 2.579860 ACCTTGCTTCTCATCATCCCTT 59.420 45.455 0.00 0.00 0.00 3.95
586 587 2.092538 CACCTTGCTTCTCATCATCCCT 60.093 50.000 0.00 0.00 0.00 4.20
587 588 2.092753 TCACCTTGCTTCTCATCATCCC 60.093 50.000 0.00 0.00 0.00 3.85
588 589 3.272574 TCACCTTGCTTCTCATCATCC 57.727 47.619 0.00 0.00 0.00 3.51
589 590 5.356190 TCATTTCACCTTGCTTCTCATCATC 59.644 40.000 0.00 0.00 0.00 2.92
590 591 5.258841 TCATTTCACCTTGCTTCTCATCAT 58.741 37.500 0.00 0.00 0.00 2.45
591 592 4.654915 TCATTTCACCTTGCTTCTCATCA 58.345 39.130 0.00 0.00 0.00 3.07
592 593 5.633830 TTCATTTCACCTTGCTTCTCATC 57.366 39.130 0.00 0.00 0.00 2.92
593 594 5.279156 GGTTTCATTTCACCTTGCTTCTCAT 60.279 40.000 0.00 0.00 0.00 2.90
594 595 4.037923 GGTTTCATTTCACCTTGCTTCTCA 59.962 41.667 0.00 0.00 0.00 3.27
595 596 4.279420 AGGTTTCATTTCACCTTGCTTCTC 59.721 41.667 0.00 0.00 40.85 2.87
596 597 4.218312 AGGTTTCATTTCACCTTGCTTCT 58.782 39.130 0.00 0.00 40.85 2.85
597 598 4.590850 AGGTTTCATTTCACCTTGCTTC 57.409 40.909 0.00 0.00 40.85 3.86
638 639 9.344772 GGACTGATGAACCGTATATCTATATCT 57.655 37.037 0.00 0.00 0.00 1.98
639 640 9.344772 AGGACTGATGAACCGTATATCTATATC 57.655 37.037 0.00 0.00 0.00 1.63
641 642 9.610705 GTAGGACTGATGAACCGTATATCTATA 57.389 37.037 0.00 0.00 0.00 1.31
642 643 7.556996 GGTAGGACTGATGAACCGTATATCTAT 59.443 40.741 0.00 0.00 0.00 1.98
643 644 6.883217 GGTAGGACTGATGAACCGTATATCTA 59.117 42.308 0.00 0.00 0.00 1.98
644 645 5.711036 GGTAGGACTGATGAACCGTATATCT 59.289 44.000 0.00 0.00 0.00 1.98
645 646 5.391736 CGGTAGGACTGATGAACCGTATATC 60.392 48.000 4.12 0.00 46.10 1.63
646 647 4.458295 CGGTAGGACTGATGAACCGTATAT 59.542 45.833 4.12 0.00 46.10 0.86
647 648 3.817084 CGGTAGGACTGATGAACCGTATA 59.183 47.826 4.12 0.00 46.10 1.47
648 649 2.621998 CGGTAGGACTGATGAACCGTAT 59.378 50.000 4.12 0.00 46.10 3.06
660 661 0.824759 GGTGAATCAGCGGTAGGACT 59.175 55.000 0.00 0.00 0.00 3.85
680 681 0.902531 GGTCCGGATTGTCAGAGGAA 59.097 55.000 7.81 0.00 32.20 3.36
798 799 3.463944 ACGCGAAGAAAAGAAGAGGAAA 58.536 40.909 15.93 0.00 0.00 3.13
864 865 4.593864 GAGAGGGATCGTGCGGGC 62.594 72.222 0.00 0.00 0.00 6.13
1010 1018 0.682852 GGGCCAAAACCAAACCCTAC 59.317 55.000 4.39 0.00 37.59 3.18
1135 1144 0.099082 GCTCCTTCGACACCTCGTAG 59.901 60.000 0.00 0.00 41.02 3.51
1216 1225 2.254703 GACGATCTGAGTCGCGGTGT 62.255 60.000 6.13 0.00 45.12 4.16
1434 1443 3.406200 CCTCCCTGCTGACCCCAG 61.406 72.222 0.00 0.00 43.22 4.45
1462 1471 3.713826 TTTCGCTTCTTAGTTGGGGAT 57.286 42.857 0.00 0.00 0.00 3.85
1492 1501 8.657387 TTGAACCATTCCTGTCCAAAATAATA 57.343 30.769 0.00 0.00 0.00 0.98
1525 1534 2.742053 GCTACTCGCAAAATCTTGGACA 59.258 45.455 0.00 0.00 38.92 4.02
1539 1548 3.738282 GCCTACATCTTTCATGCTACTCG 59.262 47.826 0.00 0.00 0.00 4.18
1540 1549 4.509600 GTGCCTACATCTTTCATGCTACTC 59.490 45.833 0.00 0.00 0.00 2.59
1542 1551 4.272018 CAGTGCCTACATCTTTCATGCTAC 59.728 45.833 0.00 0.00 0.00 3.58
1543 1552 4.080919 ACAGTGCCTACATCTTTCATGCTA 60.081 41.667 0.00 0.00 0.00 3.49
1555 1567 1.228124 GGCAACCACAGTGCCTACA 60.228 57.895 8.18 0.00 44.72 2.74
1658 1670 6.274436 TCCTCCATAATAACCCTATCATTGCA 59.726 38.462 0.00 0.00 0.00 4.08
1659 1671 6.721318 TCCTCCATAATAACCCTATCATTGC 58.279 40.000 0.00 0.00 0.00 3.56
1771 1783 4.519147 GTGACACGCTTTTCTTCTTCTTC 58.481 43.478 0.00 0.00 0.00 2.87
1774 1789 2.612212 TGGTGACACGCTTTTCTTCTTC 59.388 45.455 0.00 0.00 33.40 2.87
1775 1790 2.614057 CTGGTGACACGCTTTTCTTCTT 59.386 45.455 0.00 0.00 35.60 2.52
1776 1791 2.158957 TCTGGTGACACGCTTTTCTTCT 60.159 45.455 0.00 0.00 35.60 2.85
1847 1862 6.214412 ACTGAGGAGTTTGAGTCTTTATCCAT 59.786 38.462 7.47 0.00 0.00 3.41
1876 1891 2.082231 TGTACTACGCCAGAGTCAGAC 58.918 52.381 0.00 0.00 0.00 3.51
2639 2681 4.967084 TTGAGTGTAAGGCTTTAGTGGA 57.033 40.909 4.45 0.00 0.00 4.02
2995 3069 6.261603 CCAAGCATTCTAAATATCTGCAGTCA 59.738 38.462 14.67 2.80 35.32 3.41
3037 3111 7.119262 CGGTAATTTAGAATAACCAGGCCATAG 59.881 40.741 5.01 0.00 0.00 2.23
3362 3436 4.371786 TGATATGCGCTGTAAGAAGAAGG 58.628 43.478 9.73 0.00 34.07 3.46
3498 3572 9.929180 CTATGCTGATAGGTTAAAGCTTATACA 57.071 33.333 0.00 0.00 36.60 2.29
3597 3673 2.048601 AGAGGATCAGGGCTCTTCATG 58.951 52.381 0.00 0.00 37.82 3.07
3715 3791 6.007076 TGCACTTCCATTAGGTTCATGTTAA 58.993 36.000 0.00 0.00 35.89 2.01
3716 3792 5.565509 TGCACTTCCATTAGGTTCATGTTA 58.434 37.500 0.00 0.00 35.89 2.41
3717 3793 4.406456 TGCACTTCCATTAGGTTCATGTT 58.594 39.130 0.00 0.00 35.89 2.71
3718 3794 4.032960 TGCACTTCCATTAGGTTCATGT 57.967 40.909 0.00 0.00 35.89 3.21
3729 3805 2.291209 TGGAACACATGCACTTCCAT 57.709 45.000 12.98 0.00 38.83 3.41
3740 3816 2.224113 GGACGTCTAACCTTGGAACACA 60.224 50.000 16.46 0.00 39.29 3.72
3753 3829 6.304624 ACTTCATATATCCAGTGGACGTCTA 58.695 40.000 15.86 6.50 32.98 2.59
3853 3936 5.230942 AGCACGGAATATAAGGAGAAATCG 58.769 41.667 0.00 0.00 0.00 3.34
3935 4018 7.390718 GTGGATTAGATTGTGACCAAGTAAAGT 59.609 37.037 0.00 0.00 33.17 2.66
3936 4019 7.607991 AGTGGATTAGATTGTGACCAAGTAAAG 59.392 37.037 0.00 0.00 33.17 1.85
3937 4020 7.390440 CAGTGGATTAGATTGTGACCAAGTAAA 59.610 37.037 0.00 0.00 33.17 2.01
3940 4023 5.221925 ACAGTGGATTAGATTGTGACCAAGT 60.222 40.000 0.00 0.00 33.17 3.16
3941 4024 5.122869 CACAGTGGATTAGATTGTGACCAAG 59.877 44.000 0.00 0.00 41.12 3.61
4683 4853 5.016831 GGATAACAAAGGTCATGGGAAGTT 58.983 41.667 0.00 0.00 0.00 2.66
4703 4931 8.773033 AACAAAATAGCATCTAGATTTGGGAT 57.227 30.769 15.24 2.45 33.31 3.85
4864 5115 5.579384 TTACATTTTGTAGAACGTGTCGG 57.421 39.130 0.00 0.00 33.92 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.