Multiple sequence alignment - TraesCS6A01G213600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G213600 chr6A 100.000 2622 0 0 1 2622 388961527 388958906 0.000000e+00 4843.0
1 TraesCS6A01G213600 chr5D 91.575 2635 198 11 2 2622 274216569 274213945 0.000000e+00 3615.0
2 TraesCS6A01G213600 chr5D 88.084 428 39 7 1 417 45453952 45453526 5.040000e-137 497.0
3 TraesCS6A01G213600 chr5D 84.878 205 30 1 2045 2249 25489513 25489716 3.420000e-49 206.0
4 TraesCS6A01G213600 chr5D 87.218 133 9 5 2497 2622 364997800 364997669 7.560000e-31 145.0
5 TraesCS6A01G213600 chr1B 86.986 2651 297 29 1 2622 497019104 497021735 0.000000e+00 2940.0
6 TraesCS6A01G213600 chr1B 89.640 222 10 7 955 1170 502970908 502970694 1.200000e-68 270.0
7 TraesCS6A01G213600 chr3D 87.953 1436 133 12 449 1877 409898850 409897448 0.000000e+00 1657.0
8 TraesCS6A01G213600 chr3D 91.105 697 61 1 1927 2622 409897455 409896759 0.000000e+00 942.0
9 TraesCS6A01G213600 chr3D 90.991 111 6 3 999 1108 315453352 315453459 2.100000e-31 147.0
10 TraesCS6A01G213600 chr3D 87.218 133 9 5 2497 2622 558484902 558485033 7.560000e-31 145.0
11 TraesCS6A01G213600 chr3A 84.076 1212 141 16 1431 2622 161146219 161147398 0.000000e+00 1122.0
12 TraesCS6A01G213600 chr3A 92.000 125 9 1 1219 1342 161146091 161146215 9.650000e-40 174.0
13 TraesCS6A01G213600 chr7D 86.280 1035 122 12 1595 2622 95941645 95942666 0.000000e+00 1107.0
14 TraesCS6A01G213600 chr7D 83.626 1026 122 18 1595 2601 132241642 132242640 0.000000e+00 922.0
15 TraesCS6A01G213600 chr7D 87.097 713 70 4 1442 2154 111145132 111144442 0.000000e+00 787.0
16 TraesCS6A01G213600 chr7D 87.657 478 46 8 1 466 405015525 405016001 6.380000e-151 544.0
17 TraesCS6A01G213600 chr7D 84.758 538 68 9 1 527 334244828 334245362 6.430000e-146 527.0
18 TraesCS6A01G213600 chr7D 90.226 399 36 3 2226 2622 111144441 111144044 3.870000e-143 518.0
19 TraesCS6A01G213600 chr7D 90.991 111 6 2 999 1108 594503124 594503231 2.100000e-31 147.0
20 TraesCS6A01G213600 chr5A 83.594 1213 144 19 1431 2622 451057421 451058599 0.000000e+00 1086.0
21 TraesCS6A01G213600 chr5A 83.475 708 101 7 1918 2622 486499584 486500278 0.000000e+00 645.0
22 TraesCS6A01G213600 chr5A 83.607 366 53 7 2261 2622 143364326 143363964 1.160000e-88 337.0
23 TraesCS6A01G213600 chr5A 93.548 124 7 1 1220 1342 451057294 451057417 1.600000e-42 183.0
24 TraesCS6A01G213600 chr5A 83.333 198 28 3 2045 2241 75959127 75959320 7.460000e-41 178.0
25 TraesCS6A01G213600 chr4B 86.321 848 90 22 511 1345 631926475 631927309 0.000000e+00 900.0
26 TraesCS6A01G213600 chr4B 87.740 416 38 7 1 404 603276187 603276601 8.490000e-130 473.0
27 TraesCS6A01G213600 chr7B 84.408 853 111 16 505 1345 42251000 42251842 0.000000e+00 819.0
28 TraesCS6A01G213600 chr7B 86.311 431 46 9 531 957 181997569 181997148 8.550000e-125 457.0
29 TraesCS6A01G213600 chr7B 87.113 388 48 1 518 903 295710355 295710742 3.100000e-119 438.0
30 TraesCS6A01G213600 chr7B 91.803 61 5 0 2172 2232 567730081 567730021 4.650000e-13 86.1
31 TraesCS6A01G213600 chr4D 85.660 788 90 13 461 1241 199652643 199653414 0.000000e+00 808.0
32 TraesCS6A01G213600 chr4D 86.466 133 10 5 2497 2622 142694973 142695104 3.520000e-29 139.0
33 TraesCS6A01G213600 chr2B 84.426 854 97 20 511 1349 512641317 512640485 0.000000e+00 808.0
34 TraesCS6A01G213600 chr2B 84.926 471 59 12 1 465 636978465 636978001 1.420000e-127 466.0
35 TraesCS6A01G213600 chr2B 84.855 449 57 7 511 954 114380632 114381074 2.390000e-120 442.0
36 TraesCS6A01G213600 chr2B 88.347 369 38 4 982 1345 114393043 114393411 3.100000e-119 438.0
37 TraesCS6A01G213600 chr2B 80.712 534 78 19 3 527 481662300 481661783 2.450000e-105 392.0
38 TraesCS6A01G213600 chr2B 88.085 235 23 4 940 1170 723078711 723078944 9.250000e-70 274.0
39 TraesCS6A01G213600 chr2A 87.183 710 74 9 1927 2622 527444398 527445104 0.000000e+00 791.0
40 TraesCS6A01G213600 chr2A 85.000 540 64 10 1 527 552538257 552538792 1.380000e-147 532.0
41 TraesCS6A01G213600 chr2A 79.515 371 50 15 126 493 6619146 6619493 9.380000e-60 241.0
42 TraesCS6A01G213600 chr2A 77.060 449 84 14 664 1109 527443088 527443520 9.380000e-60 241.0
43 TraesCS6A01G213600 chr2A 82.065 184 29 4 335 516 714415488 714415307 1.260000e-33 154.0
44 TraesCS6A01G213600 chr7A 86.761 710 77 8 1927 2622 629949447 629950153 0.000000e+00 774.0
45 TraesCS6A01G213600 chr7A 84.135 769 105 7 1858 2622 491817095 491816340 0.000000e+00 728.0
46 TraesCS6A01G213600 chr7A 77.528 445 80 15 664 1106 629948139 629948565 1.560000e-62 250.0
47 TraesCS6A01G213600 chr3B 84.726 694 87 13 1 678 169945030 169945720 0.000000e+00 676.0
48 TraesCS6A01G213600 chr3B 89.041 219 21 2 955 1170 683086404 683086622 4.300000e-68 268.0
49 TraesCS6A01G213600 chr6B 84.240 533 71 12 2 527 594704470 594703944 8.370000e-140 507.0
50 TraesCS6A01G213600 chr6B 86.340 388 51 1 518 903 389118212 389118599 3.120000e-114 422.0
51 TraesCS6A01G213600 chr2D 89.920 377 37 1 2247 2622 482922175 482922551 3.920000e-133 484.0
52 TraesCS6A01G213600 chr5B 82.885 520 68 17 3 515 3270658 3270153 5.150000e-122 448.0
53 TraesCS6A01G213600 chr5B 87.218 133 9 5 2497 2622 537582786 537582917 7.560000e-31 145.0
54 TraesCS6A01G213600 chr1D 77.909 679 96 37 37 678 13161549 13162210 8.860000e-100 374.0
55 TraesCS6A01G213600 chr1D 86.466 133 10 5 2497 2622 27639304 27639173 3.520000e-29 139.0
56 TraesCS6A01G213600 chr1D 86.466 133 10 5 2497 2622 345052274 345052405 3.520000e-29 139.0
57 TraesCS6A01G213600 chr6D 83.957 187 24 4 2047 2230 120912266 120912083 9.650000e-40 174.0
58 TraesCS6A01G213600 chr6D 85.714 133 11 5 2497 2622 195545780 195545911 1.640000e-27 134.0
59 TraesCS6A01G213600 chr6D 86.885 122 9 4 2508 2622 356066811 356066690 2.120000e-26 130.0
60 TraesCS6A01G213600 chr4A 84.667 150 15 6 2480 2622 108482472 108482620 2.720000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G213600 chr6A 388958906 388961527 2621 True 4843.0 4843 100.0000 1 2622 1 chr6A.!!$R1 2621
1 TraesCS6A01G213600 chr5D 274213945 274216569 2624 True 3615.0 3615 91.5750 2 2622 1 chr5D.!!$R2 2620
2 TraesCS6A01G213600 chr1B 497019104 497021735 2631 False 2940.0 2940 86.9860 1 2622 1 chr1B.!!$F1 2621
3 TraesCS6A01G213600 chr3D 409896759 409898850 2091 True 1299.5 1657 89.5290 449 2622 2 chr3D.!!$R1 2173
4 TraesCS6A01G213600 chr3A 161146091 161147398 1307 False 648.0 1122 88.0380 1219 2622 2 chr3A.!!$F1 1403
5 TraesCS6A01G213600 chr7D 95941645 95942666 1021 False 1107.0 1107 86.2800 1595 2622 1 chr7D.!!$F1 1027
6 TraesCS6A01G213600 chr7D 132241642 132242640 998 False 922.0 922 83.6260 1595 2601 1 chr7D.!!$F2 1006
7 TraesCS6A01G213600 chr7D 111144044 111145132 1088 True 652.5 787 88.6615 1442 2622 2 chr7D.!!$R1 1180
8 TraesCS6A01G213600 chr7D 334244828 334245362 534 False 527.0 527 84.7580 1 527 1 chr7D.!!$F3 526
9 TraesCS6A01G213600 chr5A 486499584 486500278 694 False 645.0 645 83.4750 1918 2622 1 chr5A.!!$F2 704
10 TraesCS6A01G213600 chr5A 451057294 451058599 1305 False 634.5 1086 88.5710 1220 2622 2 chr5A.!!$F3 1402
11 TraesCS6A01G213600 chr4B 631926475 631927309 834 False 900.0 900 86.3210 511 1345 1 chr4B.!!$F2 834
12 TraesCS6A01G213600 chr7B 42251000 42251842 842 False 819.0 819 84.4080 505 1345 1 chr7B.!!$F1 840
13 TraesCS6A01G213600 chr4D 199652643 199653414 771 False 808.0 808 85.6600 461 1241 1 chr4D.!!$F2 780
14 TraesCS6A01G213600 chr2B 512640485 512641317 832 True 808.0 808 84.4260 511 1349 1 chr2B.!!$R2 838
15 TraesCS6A01G213600 chr2B 481661783 481662300 517 True 392.0 392 80.7120 3 527 1 chr2B.!!$R1 524
16 TraesCS6A01G213600 chr2A 552538257 552538792 535 False 532.0 532 85.0000 1 527 1 chr2A.!!$F2 526
17 TraesCS6A01G213600 chr2A 527443088 527445104 2016 False 516.0 791 82.1215 664 2622 2 chr2A.!!$F3 1958
18 TraesCS6A01G213600 chr7A 491816340 491817095 755 True 728.0 728 84.1350 1858 2622 1 chr7A.!!$R1 764
19 TraesCS6A01G213600 chr7A 629948139 629950153 2014 False 512.0 774 82.1445 664 2622 2 chr7A.!!$F1 1958
20 TraesCS6A01G213600 chr3B 169945030 169945720 690 False 676.0 676 84.7260 1 678 1 chr3B.!!$F1 677
21 TraesCS6A01G213600 chr6B 594703944 594704470 526 True 507.0 507 84.2400 2 527 1 chr6B.!!$R1 525
22 TraesCS6A01G213600 chr5B 3270153 3270658 505 True 448.0 448 82.8850 3 515 1 chr5B.!!$R1 512
23 TraesCS6A01G213600 chr1D 13161549 13162210 661 False 374.0 374 77.9090 37 678 1 chr1D.!!$F1 641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
528 578 0.109781 AATCGCGTTGTGTTGATGCC 60.11 50.0 5.77 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1882 2424 1.007271 CGTTGCCACGTCTCACTCT 60.007 57.895 1.47 0.0 41.84 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
248 255 9.289782 GATATAACAATCCCTTTTGCAGTAGAT 57.710 33.333 0.00 0.00 0.00 1.98
252 259 5.652452 ACAATCCCTTTTGCAGTAGATAACC 59.348 40.000 0.00 0.00 0.00 2.85
299 312 7.542025 CAAGCCAGAGTAATTGCTCTTTTAAT 58.458 34.615 21.85 6.58 42.69 1.40
350 373 7.335127 ACTGGATGGATATGTTAGGCTAAAT 57.665 36.000 8.86 7.68 0.00 1.40
380 403 3.199946 ACCACGGAGTTGATGATTACCAT 59.800 43.478 0.00 0.00 41.61 3.55
406 429 1.992233 GCTGAAATCAATCGCGGCCA 61.992 55.000 6.13 0.00 0.00 5.36
441 464 0.463204 CAGACAGATGAGTCGGCCAT 59.537 55.000 2.24 0.00 43.24 4.40
489 512 3.206150 GAATCAATCACAGGCGTGGTAT 58.794 45.455 11.67 0.66 43.79 2.73
527 577 0.976963 CAATCGCGTTGTGTTGATGC 59.023 50.000 5.77 0.00 33.01 3.91
528 578 0.109781 AATCGCGTTGTGTTGATGCC 60.110 50.000 5.77 0.00 0.00 4.40
529 579 1.233950 ATCGCGTTGTGTTGATGCCA 61.234 50.000 5.77 0.00 0.00 4.92
556 606 1.368641 GGTGACTTGCGCATGTATCA 58.631 50.000 26.64 18.80 0.00 2.15
644 696 8.333235 ACACCTTTGTAATGAATAATGGTCCTA 58.667 33.333 0.00 0.00 35.39 2.94
824 917 3.866582 ATCCAGTAGCCCAGCGCC 61.867 66.667 2.29 0.00 38.78 6.53
835 928 1.535204 CCCAGCGCCAGGTCAAATTT 61.535 55.000 14.60 0.00 0.00 1.82
845 938 2.827322 CAGGTCAAATTTCCTGGCATCA 59.173 45.455 15.19 0.00 45.11 3.07
880 973 7.308450 TCTGGGTAGATTTTATCTCCTCATG 57.692 40.000 0.00 0.00 40.76 3.07
898 991 6.432783 TCCTCATGGTTGTAAATGGTAAAGTG 59.567 38.462 0.00 0.00 34.23 3.16
906 999 8.241367 GGTTGTAAATGGTAAAGTGACAATAGG 58.759 37.037 0.00 0.00 0.00 2.57
912 1005 2.808906 AAAGTGACAATAGGGCCCTC 57.191 50.000 32.80 15.25 0.00 4.30
942 1035 5.539048 CCGTCTCTCCTTTCTTTACTTTCA 58.461 41.667 0.00 0.00 0.00 2.69
980 1073 3.952323 AGCACTAACTACTGGAATAGCGA 59.048 43.478 0.00 0.00 0.00 4.93
1057 1162 1.373570 GAAAATCCCTGAGCTCACCG 58.626 55.000 13.74 3.87 0.00 4.94
1063 1168 2.580815 CTGAGCTCACCGGCATGA 59.419 61.111 13.74 0.00 34.17 3.07
1064 1169 1.078918 CTGAGCTCACCGGCATGAA 60.079 57.895 13.74 0.00 34.17 2.57
1065 1170 0.674581 CTGAGCTCACCGGCATGAAA 60.675 55.000 13.74 0.00 34.17 2.69
1179 1286 5.878669 GTGGACGTAAATATTCAGAAACCCT 59.121 40.000 0.00 0.00 0.00 4.34
1184 1291 5.296035 CGTAAATATTCAGAAACCCTCACCC 59.704 44.000 0.00 0.00 0.00 4.61
1202 1309 2.562738 ACCCCAGCAGCAATTTAACTTC 59.437 45.455 0.00 0.00 0.00 3.01
1203 1310 2.827921 CCCCAGCAGCAATTTAACTTCT 59.172 45.455 0.00 0.00 0.00 2.85
1264 1438 3.008923 TGTTTCTCCAGCATGTACATCCA 59.991 43.478 5.07 0.00 0.00 3.41
1367 1543 2.811431 TGTTGTTTGACAATAGGCCTCG 59.189 45.455 9.68 0.81 40.59 4.63
1372 1548 1.496060 TGACAATAGGCCTCGGTGAT 58.504 50.000 9.68 0.00 0.00 3.06
1377 1553 3.322254 ACAATAGGCCTCGGTGATAGAAG 59.678 47.826 9.68 0.00 0.00 2.85
1408 1584 0.250295 CTCAAGGCAAGGGACAACGA 60.250 55.000 0.00 0.00 0.00 3.85
1414 1590 2.920912 AAGGGACAACGAGGGCGA 60.921 61.111 0.00 0.00 41.64 5.54
1416 1592 2.726822 AAGGGACAACGAGGGCGAAC 62.727 60.000 0.00 0.00 41.64 3.95
1440 1683 1.719117 CGGATTACGCCGCAACATT 59.281 52.632 0.00 0.00 45.38 2.71
1596 2052 3.575351 GACAGCGGCGACTTCAGGT 62.575 63.158 12.98 1.26 0.00 4.00
1758 2298 1.069090 GGTCGACAGTGGCTTGACA 59.931 57.895 18.91 0.00 0.00 3.58
1780 2321 3.766691 GGACTAGAACCGCGGGCA 61.767 66.667 31.76 10.14 0.00 5.36
2254 2818 8.640091 TTCTAGATCGTGATTGATTTCTTCAG 57.360 34.615 0.00 0.00 35.27 3.02
2265 2829 0.984230 TTTCTTCAGGTGAGGGCGAT 59.016 50.000 0.00 0.00 0.00 4.58
2271 2835 2.267961 GGTGAGGGCGATTCCGTT 59.732 61.111 0.00 0.00 38.24 4.44
2279 2843 1.439679 GGCGATTCCGTTTCTCTGTT 58.560 50.000 0.00 0.00 38.24 3.16
2305 2870 3.091545 TCCGGTTGTAACTATCTTCGGT 58.908 45.455 0.00 0.00 37.72 4.69
2382 2953 1.510844 GGCGGAAATTGCGATTGGT 59.489 52.632 11.83 0.00 30.86 3.67
2389 2960 3.378112 GGAAATTGCGATTGGTCTGATCA 59.622 43.478 0.00 0.00 0.00 2.92
2437 3008 6.094881 TGTCGAAATTCTCTTGAACCTTTGTT 59.905 34.615 0.00 0.00 37.42 2.83
2593 3173 3.926821 GGTTTGAGCCGGAAAATTACA 57.073 42.857 5.05 0.00 0.00 2.41
2604 3184 5.618561 CCGGAAAATTACAAACTTCTCGAG 58.381 41.667 5.93 5.93 0.00 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 118 2.225117 GGGGCTACATGGATATGGCTTT 60.225 50.000 0.00 0.00 38.66 3.51
113 119 1.355720 GGGGCTACATGGATATGGCTT 59.644 52.381 0.00 0.00 38.66 4.35
248 255 2.477245 TCTCTAATGCAGGGCAGGTTA 58.523 47.619 0.00 0.00 43.65 2.85
252 259 2.681848 CAAGTTCTCTAATGCAGGGCAG 59.318 50.000 0.00 0.00 43.65 4.85
380 403 2.162208 GCGATTGATTTCAGCTTCACCA 59.838 45.455 0.00 0.00 0.00 4.17
539 589 2.270923 GACTGATACATGCGCAAGTCA 58.729 47.619 22.97 17.48 41.68 3.41
556 606 2.360852 GTGCCATGCTGCTGGACT 60.361 61.111 18.30 0.00 38.69 3.85
644 696 6.399743 ACTTTGGTTTGTGGTAAATTTTCGT 58.600 32.000 0.00 0.00 0.00 3.85
703 756 7.629157 TGACAAGTGATATCCATCCAAGTTTA 58.371 34.615 0.00 0.00 0.00 2.01
704 757 6.484288 TGACAAGTGATATCCATCCAAGTTT 58.516 36.000 0.00 0.00 0.00 2.66
705 758 6.065976 TGACAAGTGATATCCATCCAAGTT 57.934 37.500 0.00 0.00 0.00 2.66
746 807 1.629043 ACTTGGTCTGCTCCGTCTTA 58.371 50.000 0.00 0.00 0.00 2.10
747 808 0.759346 AACTTGGTCTGCTCCGTCTT 59.241 50.000 0.00 0.00 0.00 3.01
835 928 0.612744 TCACGTCAATGATGCCAGGA 59.387 50.000 1.78 0.00 0.00 3.86
845 938 5.359194 AATCTACCCAGAATCACGTCAAT 57.641 39.130 0.00 0.00 33.50 2.57
880 973 8.241367 CCTATTGTCACTTTACCATTTACAACC 58.759 37.037 0.00 0.00 0.00 3.77
916 1009 2.171341 AAAGAAAGGAGAGACGGCAC 57.829 50.000 0.00 0.00 0.00 5.01
917 1010 2.897969 AGTAAAGAAAGGAGAGACGGCA 59.102 45.455 0.00 0.00 0.00 5.69
918 1011 3.596310 AGTAAAGAAAGGAGAGACGGC 57.404 47.619 0.00 0.00 0.00 5.68
919 1012 5.539048 TGAAAGTAAAGAAAGGAGAGACGG 58.461 41.667 0.00 0.00 0.00 4.79
942 1035 3.494332 AGTGCTGGCAAGAAGAGAAAAT 58.506 40.909 0.00 0.00 0.00 1.82
974 1067 2.818132 GCACTGGCTCCTCGCTAT 59.182 61.111 0.00 0.00 39.13 2.97
1179 1286 1.892474 GTTAAATTGCTGCTGGGGTGA 59.108 47.619 0.00 0.00 0.00 4.02
1184 1291 3.248266 GCAGAAGTTAAATTGCTGCTGG 58.752 45.455 21.80 2.31 46.17 4.85
1202 1309 2.027745 TGCCAGGAAGTTTCTAGAGCAG 60.028 50.000 0.00 0.00 0.00 4.24
1203 1310 1.977854 TGCCAGGAAGTTTCTAGAGCA 59.022 47.619 0.00 0.00 0.00 4.26
1206 1313 5.441718 AATGATGCCAGGAAGTTTCTAGA 57.558 39.130 0.00 0.00 0.00 2.43
1298 1474 4.908601 TGAAGGACCAAAAGATGCTCTA 57.091 40.909 0.00 0.00 0.00 2.43
1367 1543 1.383523 GGTGGCTTGCTTCTATCACC 58.616 55.000 0.00 0.00 37.98 4.02
1372 1548 2.046314 GCCGGTGGCTTGCTTCTA 60.046 61.111 1.90 0.00 46.69 2.10
1564 2020 2.363795 TGTCGCCCTACCTCCTGG 60.364 66.667 0.00 0.00 39.83 4.45
1579 2035 3.575351 GACCTGAAGTCGCCGCTGT 62.575 63.158 0.00 0.00 35.30 4.40
1747 2287 4.988598 CCGCGGTGTCAAGCCACT 62.989 66.667 19.50 0.00 35.63 4.00
1792 2333 2.356673 GCGGGTTTTCTCGGTCGT 60.357 61.111 0.00 0.00 44.98 4.34
1795 2336 2.668550 GCTGCGGGTTTTCTCGGT 60.669 61.111 0.00 0.00 44.98 4.69
1882 2424 1.007271 CGTTGCCACGTCTCACTCT 60.007 57.895 1.47 0.00 41.84 3.24
2064 2606 3.816090 GGATTTGCCGGGGCCCTA 61.816 66.667 24.38 3.67 41.09 3.53
2083 2625 2.829003 CGGTCCGCTCCTCTGCTA 60.829 66.667 0.00 0.00 0.00 3.49
2254 2818 1.366854 GAAACGGAATCGCCCTCACC 61.367 60.000 0.00 0.00 40.63 4.02
2265 2829 3.064271 CGGAAACAAACAGAGAAACGGAA 59.936 43.478 0.00 0.00 0.00 4.30
2271 2835 3.349022 ACAACCGGAAACAAACAGAGAA 58.651 40.909 9.46 0.00 0.00 2.87
2279 2843 5.406175 CGAAGATAGTTACAACCGGAAACAA 59.594 40.000 9.46 0.00 0.00 2.83
2382 2953 1.333931 GCGTCGTATCCAGTGATCAGA 59.666 52.381 0.00 0.00 32.18 3.27
2389 2960 1.153823 GCTGTGCGTCGTATCCAGT 60.154 57.895 0.00 0.00 0.00 4.00
2467 3038 1.890876 TTGGTTTATCTGTGCACGCT 58.109 45.000 13.13 1.40 0.00 5.07
2482 3053 5.183904 GGCATGAGATTAAGACTGTTTTGGT 59.816 40.000 0.00 0.00 0.00 3.67
2593 3173 4.283722 TCTTTTCTAGGGCTCGAGAAGTTT 59.716 41.667 18.75 0.00 36.32 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.