Multiple sequence alignment - TraesCS6A01G212800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G212800 chr6A 100.000 8914 0 0 1 8914 387071040 387062127 0.000000e+00 16462
1 TraesCS6A01G212800 chr6D 97.787 7681 144 18 650 8315 270545758 270553427 0.000000e+00 13219
2 TraesCS6A01G212800 chr6D 88.948 561 41 14 8356 8910 270553518 270554063 0.000000e+00 673
3 TraesCS6A01G212800 chr6D 87.500 104 13 0 2 105 425298543 425298646 4.370000e-23 121
4 TraesCS6A01G212800 chr6B 96.568 6177 156 16 814 6950 423411359 423405199 0.000000e+00 10181
5 TraesCS6A01G212800 chr6B 94.916 1967 84 11 6948 8910 423405076 423403122 0.000000e+00 3064
6 TraesCS6A01G212800 chr6B 91.228 456 38 2 116 570 508168083 508168537 3.540000e-173 619
7 TraesCS6A01G212800 chr6B 89.516 124 13 0 1 124 508166761 508166884 3.330000e-34 158
8 TraesCS6A01G212800 chr6B 91.509 106 8 1 8806 8910 423403116 423403011 2.590000e-30 145
9 TraesCS6A01G212800 chr7B 88.772 570 63 1 1 570 521582275 521581707 0.000000e+00 697
10 TraesCS6A01G212800 chr5A 81.200 500 92 2 69 568 438406794 438407291 1.390000e-107 401
11 TraesCS6A01G212800 chr4A 76.207 580 123 14 2 572 517395343 517394770 8.750000e-75 292
12 TraesCS6A01G212800 chr3A 75.625 160 33 5 215 369 628864937 628865095 3.450000e-09 75


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G212800 chr6A 387062127 387071040 8913 True 16462.000000 16462 100.0000 1 8914 1 chr6A.!!$R1 8913
1 TraesCS6A01G212800 chr6D 270545758 270554063 8305 False 6946.000000 13219 93.3675 650 8910 2 chr6D.!!$F2 8260
2 TraesCS6A01G212800 chr6B 423403011 423411359 8348 True 4463.333333 10181 94.3310 814 8910 3 chr6B.!!$R1 8096
3 TraesCS6A01G212800 chr6B 508166761 508168537 1776 False 388.500000 619 90.3720 1 570 2 chr6B.!!$F1 569
4 TraesCS6A01G212800 chr7B 521581707 521582275 568 True 697.000000 697 88.7720 1 570 1 chr7B.!!$R1 569
5 TraesCS6A01G212800 chr4A 517394770 517395343 573 True 292.000000 292 76.2070 2 572 1 chr4A.!!$R1 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
550 551 0.029567 CTAGTCCTAGTCGCCGCAAG 59.970 60.000 0.00 0.00 0.00 4.01 F
577 578 0.032952 GGGTTTCGGGAAAAGTTGGC 59.967 55.000 0.00 0.00 31.33 4.52 F
641 642 0.245539 CCGTATTCCTCCGTGTGTGT 59.754 55.000 0.00 0.00 0.00 3.72 F
817 818 0.951558 GGATGTGACAAAGCACCGTT 59.048 50.000 0.00 0.00 37.99 4.44 F
867 868 1.079543 CAGCTCGGTGTCTTCCCTG 60.080 63.158 0.00 0.00 0.00 4.45 F
1029 1032 1.222387 CTCCGACTCCGACTCCTCT 59.778 63.158 0.00 0.00 38.22 3.69 F
1221 1572 1.956629 ATACCCTGGTCCGCACGAAG 61.957 60.000 0.00 0.00 0.00 3.79 F
3121 3619 0.339859 ATGAGCCCCTGGAGACTACA 59.660 55.000 0.00 0.00 0.00 2.74 F
3868 4461 4.813027 AGCTGCAGTTGGACATTATTTTG 58.187 39.130 16.64 0.00 0.00 2.44 F
5858 6485 0.961019 TGCTTCAAATGACCACCAGC 59.039 50.000 0.00 0.00 0.00 4.85 F
7183 7939 1.446966 GGGCTCAGAGTCTGAACGC 60.447 63.158 22.83 21.65 40.18 4.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1560 1912 0.110486 TTCCTGAACCAAGCCCAGTC 59.890 55.000 0.00 0.00 0.00 3.51 R
2295 2793 1.809567 GCCCTTTGTGACAGCCAAGG 61.810 60.000 7.42 7.42 0.00 3.61 R
2714 3212 2.178912 TTAACTTTCCGGTGCTCCAG 57.821 50.000 0.00 0.00 0.00 3.86 R
2819 3317 1.188863 GCATCATCTTTGGCCTGGTT 58.811 50.000 3.32 0.00 0.00 3.67 R
2868 3366 2.302733 TGTGCAGACAGCCTATGAAGAA 59.697 45.455 0.00 0.00 44.83 2.52 R
3121 3619 0.673437 CGCACTGGTCCACCAATTTT 59.327 50.000 0.00 0.00 46.97 1.82 R
3141 3639 1.022982 TCTTCGCTGGATGCTGCTTG 61.023 55.000 13.87 4.45 40.11 4.01 R
4830 5426 1.502163 AAGCTGCGCTATGAATCGGC 61.502 55.000 9.73 0.00 38.25 5.54 R
5876 6503 4.020751 TCTGAGATCTTCCTCCAGTTTGTG 60.021 45.833 0.00 0.00 32.32 3.33 R
7531 8289 1.893801 ACGTCCAAGTAGAACTCCAGG 59.106 52.381 0.00 0.00 0.00 4.45 R
8637 9458 0.036105 TGCAGAGTCGGTGAATGCAT 60.036 50.000 0.00 0.00 41.65 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.884668 TTCGTTCTTCAGATTGTAGGGT 57.115 40.909 0.00 0.00 0.00 4.34
47 48 5.232463 GTTTACAACCCTAACACAGATCGA 58.768 41.667 0.00 0.00 0.00 3.59
53 54 1.550065 CTAACACAGATCGACAGCCG 58.450 55.000 0.00 0.00 40.25 5.52
132 133 0.895100 GTTTGCTGATGTGCCAGGGA 60.895 55.000 0.00 0.00 34.82 4.20
159 160 2.160205 TCCCATACACGATCTCGATCC 58.840 52.381 6.60 0.00 43.02 3.36
165 166 0.936764 CACGATCTCGATCCCGCTTG 60.937 60.000 6.60 0.00 43.02 4.01
168 169 0.105039 GATCTCGATCCCGCTTGGTT 59.895 55.000 0.00 0.00 35.37 3.67
179 180 0.660300 CGCTTGGTTTCAAACTCCGC 60.660 55.000 0.00 0.00 31.77 5.54
183 184 0.462225 TGGTTTCAAACTCCGCGACA 60.462 50.000 8.23 0.00 0.00 4.35
201 202 2.962421 GACAAACATGTTCTCCCCCAAA 59.038 45.455 12.39 0.00 0.00 3.28
206 207 1.075374 CATGTTCTCCCCCAAAGGACA 59.925 52.381 0.00 0.00 36.69 4.02
207 208 0.771127 TGTTCTCCCCCAAAGGACAG 59.229 55.000 0.00 0.00 38.24 3.51
208 209 1.064825 GTTCTCCCCCAAAGGACAGA 58.935 55.000 0.00 0.00 38.24 3.41
209 210 1.636003 GTTCTCCCCCAAAGGACAGAT 59.364 52.381 0.00 0.00 38.24 2.90
210 211 1.584724 TCTCCCCCAAAGGACAGATC 58.415 55.000 0.00 0.00 38.24 2.75
211 212 0.179000 CTCCCCCAAAGGACAGATCG 59.821 60.000 0.00 0.00 38.24 3.69
212 213 1.452108 CCCCCAAAGGACAGATCGC 60.452 63.158 0.00 0.00 38.24 4.58
213 214 1.452108 CCCCAAAGGACAGATCGCC 60.452 63.158 0.00 0.00 38.24 5.54
214 215 1.299648 CCCAAAGGACAGATCGCCA 59.700 57.895 5.34 0.00 33.47 5.69
215 216 0.745845 CCCAAAGGACAGATCGCCAG 60.746 60.000 5.34 0.00 33.47 4.85
216 217 0.745845 CCAAAGGACAGATCGCCAGG 60.746 60.000 5.34 0.00 0.00 4.45
217 218 1.078143 AAAGGACAGATCGCCAGGC 60.078 57.895 0.00 0.00 0.00 4.85
218 219 2.543067 AAAGGACAGATCGCCAGGCC 62.543 60.000 5.63 0.00 0.00 5.19
219 220 4.554036 GGACAGATCGCCAGGCCC 62.554 72.222 5.63 0.00 0.00 5.80
220 221 4.554036 GACAGATCGCCAGGCCCC 62.554 72.222 5.63 0.00 0.00 5.80
222 223 2.844362 CAGATCGCCAGGCCCCTA 60.844 66.667 5.63 0.00 0.00 3.53
223 224 2.525381 AGATCGCCAGGCCCCTAG 60.525 66.667 5.63 0.00 0.00 3.02
224 225 3.631046 GATCGCCAGGCCCCTAGG 61.631 72.222 5.63 0.06 0.00 3.02
228 229 2.367784 GCCAGGCCCCTAGGGTTA 60.368 66.667 26.66 0.00 46.51 2.85
229 230 2.753884 GCCAGGCCCCTAGGGTTAC 61.754 68.421 26.66 15.44 46.51 2.50
230 231 2.076803 CCAGGCCCCTAGGGTTACC 61.077 68.421 26.66 22.71 46.51 2.85
231 232 2.076803 CAGGCCCCTAGGGTTACCC 61.077 68.421 26.66 13.56 46.51 3.69
249 250 4.408821 CAAGCTGGGCGTAGGGCA 62.409 66.667 11.36 0.00 46.16 5.36
250 251 3.411517 AAGCTGGGCGTAGGGCAT 61.412 61.111 11.36 0.00 46.16 4.40
251 252 2.983879 AAGCTGGGCGTAGGGCATT 61.984 57.895 11.36 0.00 46.16 3.56
252 253 3.211963 GCTGGGCGTAGGGCATTG 61.212 66.667 11.36 1.58 46.16 2.82
253 254 2.516930 CTGGGCGTAGGGCATTGG 60.517 66.667 11.36 0.00 46.16 3.16
254 255 3.012119 TGGGCGTAGGGCATTGGA 61.012 61.111 11.36 0.00 46.16 3.53
255 256 2.203209 GGGCGTAGGGCATTGGAG 60.203 66.667 11.36 0.00 46.16 3.86
256 257 2.742116 GGGCGTAGGGCATTGGAGA 61.742 63.158 11.36 0.00 46.16 3.71
257 258 1.451936 GGCGTAGGGCATTGGAGAT 59.548 57.895 3.83 0.00 46.16 2.75
258 259 0.603975 GGCGTAGGGCATTGGAGATC 60.604 60.000 3.83 0.00 46.16 2.75
259 260 0.946221 GCGTAGGGCATTGGAGATCG 60.946 60.000 0.00 0.00 42.87 3.69
260 261 0.389391 CGTAGGGCATTGGAGATCGT 59.611 55.000 0.00 0.00 0.00 3.73
261 262 1.603172 CGTAGGGCATTGGAGATCGTC 60.603 57.143 0.00 0.00 0.00 4.20
262 263 1.689273 GTAGGGCATTGGAGATCGTCT 59.311 52.381 0.00 0.00 0.00 4.18
263 264 0.467384 AGGGCATTGGAGATCGTCTG 59.533 55.000 0.00 0.00 0.00 3.51
264 265 0.533755 GGGCATTGGAGATCGTCTGG 60.534 60.000 0.00 0.00 0.00 3.86
265 266 0.465705 GGCATTGGAGATCGTCTGGA 59.534 55.000 0.00 0.00 0.00 3.86
266 267 1.071385 GGCATTGGAGATCGTCTGGAT 59.929 52.381 0.00 0.00 38.35 3.41
267 268 2.141517 GCATTGGAGATCGTCTGGATG 58.858 52.381 0.00 0.00 34.82 3.51
268 269 2.484417 GCATTGGAGATCGTCTGGATGT 60.484 50.000 0.00 0.00 34.82 3.06
269 270 2.967599 TTGGAGATCGTCTGGATGTG 57.032 50.000 0.00 0.00 34.82 3.21
270 271 1.114627 TGGAGATCGTCTGGATGTGG 58.885 55.000 0.00 0.00 34.82 4.17
271 272 1.341976 TGGAGATCGTCTGGATGTGGA 60.342 52.381 0.00 0.00 34.82 4.02
272 273 1.757118 GGAGATCGTCTGGATGTGGAA 59.243 52.381 0.00 0.00 34.82 3.53
273 274 2.223923 GGAGATCGTCTGGATGTGGAAG 60.224 54.545 0.00 0.00 34.82 3.46
274 275 2.690497 GAGATCGTCTGGATGTGGAAGA 59.310 50.000 0.00 0.00 34.82 2.87
275 276 2.692557 AGATCGTCTGGATGTGGAAGAG 59.307 50.000 0.00 0.00 34.82 2.85
276 277 2.215942 TCGTCTGGATGTGGAAGAGA 57.784 50.000 0.00 0.00 0.00 3.10
277 278 2.739943 TCGTCTGGATGTGGAAGAGAT 58.260 47.619 0.00 0.00 0.00 2.75
278 279 3.099905 TCGTCTGGATGTGGAAGAGATT 58.900 45.455 0.00 0.00 0.00 2.40
279 280 3.118992 TCGTCTGGATGTGGAAGAGATTG 60.119 47.826 0.00 0.00 0.00 2.67
280 281 2.941720 GTCTGGATGTGGAAGAGATTGC 59.058 50.000 0.00 0.00 0.00 3.56
281 282 1.938577 CTGGATGTGGAAGAGATTGCG 59.061 52.381 0.00 0.00 0.00 4.85
282 283 1.554617 TGGATGTGGAAGAGATTGCGA 59.445 47.619 0.00 0.00 0.00 5.10
283 284 2.171237 TGGATGTGGAAGAGATTGCGAT 59.829 45.455 0.00 0.00 0.00 4.58
284 285 3.387699 TGGATGTGGAAGAGATTGCGATA 59.612 43.478 0.00 0.00 0.00 2.92
285 286 3.743396 GGATGTGGAAGAGATTGCGATAC 59.257 47.826 0.00 0.00 0.00 2.24
286 287 3.885724 TGTGGAAGAGATTGCGATACA 57.114 42.857 0.00 0.00 0.00 2.29
287 288 3.785486 TGTGGAAGAGATTGCGATACAG 58.215 45.455 0.00 0.00 0.00 2.74
288 289 3.447229 TGTGGAAGAGATTGCGATACAGA 59.553 43.478 0.00 0.00 0.00 3.41
289 290 4.081697 TGTGGAAGAGATTGCGATACAGAA 60.082 41.667 0.00 0.00 0.00 3.02
290 291 4.268884 GTGGAAGAGATTGCGATACAGAAC 59.731 45.833 0.00 0.00 0.00 3.01
291 292 3.804873 GGAAGAGATTGCGATACAGAACC 59.195 47.826 0.00 0.00 0.00 3.62
292 293 4.442192 GGAAGAGATTGCGATACAGAACCT 60.442 45.833 0.00 0.00 0.00 3.50
293 294 4.744795 AGAGATTGCGATACAGAACCTT 57.255 40.909 0.00 0.00 0.00 3.50
294 295 4.437239 AGAGATTGCGATACAGAACCTTG 58.563 43.478 0.00 0.00 0.00 3.61
295 296 2.939103 AGATTGCGATACAGAACCTTGC 59.061 45.455 0.00 0.00 0.00 4.01
296 297 1.448985 TTGCGATACAGAACCTTGCC 58.551 50.000 0.00 0.00 0.00 4.52
297 298 0.392461 TGCGATACAGAACCTTGCCC 60.392 55.000 0.00 0.00 0.00 5.36
298 299 1.429148 GCGATACAGAACCTTGCCCG 61.429 60.000 0.00 0.00 0.00 6.13
299 300 1.429148 CGATACAGAACCTTGCCCGC 61.429 60.000 0.00 0.00 0.00 6.13
300 301 1.077716 ATACAGAACCTTGCCCGCC 60.078 57.895 0.00 0.00 0.00 6.13
301 302 2.869503 ATACAGAACCTTGCCCGCCG 62.870 60.000 0.00 0.00 0.00 6.46
304 305 4.397832 GAACCTTGCCCGCCGGTA 62.398 66.667 1.90 0.00 0.00 4.02
305 306 4.404098 AACCTTGCCCGCCGGTAG 62.404 66.667 1.90 0.00 0.00 3.18
312 313 4.832608 CCCGCCGGTAGCCACTTC 62.833 72.222 1.90 0.00 38.78 3.01
315 316 4.078516 GCCGGTAGCCACTTCGGT 62.079 66.667 1.90 0.00 43.87 4.69
316 317 2.125673 CCGGTAGCCACTTCGGTG 60.126 66.667 0.00 0.00 44.92 4.94
317 318 2.813908 CGGTAGCCACTTCGGTGC 60.814 66.667 0.00 0.00 44.05 5.01
318 319 2.663196 GGTAGCCACTTCGGTGCT 59.337 61.111 0.00 0.00 44.05 4.40
319 320 1.741770 GGTAGCCACTTCGGTGCTG 60.742 63.158 0.00 0.00 44.05 4.41
320 321 2.047274 TAGCCACTTCGGTGCTGC 60.047 61.111 0.00 0.00 44.05 5.25
321 322 2.878089 TAGCCACTTCGGTGCTGCA 61.878 57.895 0.00 0.00 44.05 4.41
322 323 4.030452 GCCACTTCGGTGCTGCAC 62.030 66.667 24.02 24.02 44.05 4.57
331 332 4.324471 GTGCTGCACCATCATCCA 57.676 55.556 21.78 0.00 0.00 3.41
332 333 2.570365 GTGCTGCACCATCATCCAA 58.430 52.632 21.78 0.00 0.00 3.53
333 334 0.454600 GTGCTGCACCATCATCCAAG 59.545 55.000 21.78 0.00 0.00 3.61
334 335 0.038599 TGCTGCACCATCATCCAAGT 59.961 50.000 0.00 0.00 0.00 3.16
335 336 0.737219 GCTGCACCATCATCCAAGTC 59.263 55.000 0.00 0.00 0.00 3.01
336 337 1.951895 GCTGCACCATCATCCAAGTCA 60.952 52.381 0.00 0.00 0.00 3.41
337 338 2.651455 CTGCACCATCATCCAAGTCAT 58.349 47.619 0.00 0.00 0.00 3.06
338 339 2.617308 CTGCACCATCATCCAAGTCATC 59.383 50.000 0.00 0.00 0.00 2.92
339 340 1.952296 GCACCATCATCCAAGTCATCC 59.048 52.381 0.00 0.00 0.00 3.51
340 341 2.684630 GCACCATCATCCAAGTCATCCA 60.685 50.000 0.00 0.00 0.00 3.41
341 342 3.828921 CACCATCATCCAAGTCATCCAT 58.171 45.455 0.00 0.00 0.00 3.41
342 343 3.819337 CACCATCATCCAAGTCATCCATC 59.181 47.826 0.00 0.00 0.00 3.51
343 344 3.460712 ACCATCATCCAAGTCATCCATCA 59.539 43.478 0.00 0.00 0.00 3.07
344 345 3.819337 CCATCATCCAAGTCATCCATCAC 59.181 47.826 0.00 0.00 0.00 3.06
345 346 3.565764 TCATCCAAGTCATCCATCACC 57.434 47.619 0.00 0.00 0.00 4.02
346 347 2.845586 TCATCCAAGTCATCCATCACCA 59.154 45.455 0.00 0.00 0.00 4.17
347 348 3.118149 TCATCCAAGTCATCCATCACCAG 60.118 47.826 0.00 0.00 0.00 4.00
348 349 2.550175 TCCAAGTCATCCATCACCAGA 58.450 47.619 0.00 0.00 0.00 3.86
349 350 2.502947 TCCAAGTCATCCATCACCAGAG 59.497 50.000 0.00 0.00 0.00 3.35
350 351 2.421107 CCAAGTCATCCATCACCAGAGG 60.421 54.545 0.00 0.00 0.00 3.69
351 352 0.835941 AGTCATCCATCACCAGAGGC 59.164 55.000 0.00 0.00 0.00 4.70
352 353 0.531532 GTCATCCATCACCAGAGGCG 60.532 60.000 0.00 0.00 0.00 5.52
353 354 0.977627 TCATCCATCACCAGAGGCGT 60.978 55.000 0.00 0.00 0.00 5.68
354 355 0.752658 CATCCATCACCAGAGGCGTA 59.247 55.000 0.00 0.00 0.00 4.42
355 356 1.043816 ATCCATCACCAGAGGCGTAG 58.956 55.000 0.00 0.00 0.00 3.51
382 383 7.633193 TCTTCCTCAGAGATGTCTAGTTTAC 57.367 40.000 0.00 0.00 0.00 2.01
383 384 6.603997 TCTTCCTCAGAGATGTCTAGTTTACC 59.396 42.308 0.00 0.00 0.00 2.85
384 385 4.882427 TCCTCAGAGATGTCTAGTTTACCG 59.118 45.833 0.00 0.00 0.00 4.02
385 386 4.882427 CCTCAGAGATGTCTAGTTTACCGA 59.118 45.833 0.00 0.00 0.00 4.69
386 387 5.008217 CCTCAGAGATGTCTAGTTTACCGAG 59.992 48.000 0.00 0.00 0.00 4.63
387 388 4.335874 TCAGAGATGTCTAGTTTACCGAGC 59.664 45.833 0.00 0.00 0.00 5.03
388 389 3.312973 AGAGATGTCTAGTTTACCGAGCG 59.687 47.826 0.00 0.00 0.00 5.03
389 390 2.117910 GATGTCTAGTTTACCGAGCGC 58.882 52.381 0.00 0.00 0.00 5.92
390 391 0.171903 TGTCTAGTTTACCGAGCGCC 59.828 55.000 2.29 0.00 0.00 6.53
391 392 0.455005 GTCTAGTTTACCGAGCGCCT 59.545 55.000 2.29 0.00 0.00 5.52
392 393 0.737219 TCTAGTTTACCGAGCGCCTC 59.263 55.000 2.29 0.00 0.00 4.70
393 394 0.248949 CTAGTTTACCGAGCGCCTCC 60.249 60.000 2.29 0.00 0.00 4.30
394 395 0.682209 TAGTTTACCGAGCGCCTCCT 60.682 55.000 2.29 0.00 0.00 3.69
395 396 1.518792 GTTTACCGAGCGCCTCCTC 60.519 63.158 2.29 0.00 0.00 3.71
396 397 2.718073 TTTACCGAGCGCCTCCTCC 61.718 63.158 2.29 0.00 0.00 4.30
397 398 3.949885 TTACCGAGCGCCTCCTCCA 62.950 63.158 2.29 0.00 0.00 3.86
398 399 3.733507 TACCGAGCGCCTCCTCCAT 62.734 63.158 2.29 0.00 0.00 3.41
399 400 3.854669 CCGAGCGCCTCCTCCATT 61.855 66.667 2.29 0.00 0.00 3.16
400 401 2.187946 CGAGCGCCTCCTCCATTT 59.812 61.111 2.29 0.00 0.00 2.32
401 402 2.176273 CGAGCGCCTCCTCCATTTG 61.176 63.158 2.29 0.00 0.00 2.32
402 403 2.439156 AGCGCCTCCTCCATTTGC 60.439 61.111 2.29 0.00 0.00 3.68
404 405 3.880846 CGCCTCCTCCATTTGCGC 61.881 66.667 0.00 0.00 38.69 6.09
405 406 3.521796 GCCTCCTCCATTTGCGCC 61.522 66.667 4.18 0.00 0.00 6.53
406 407 2.830370 CCTCCTCCATTTGCGCCC 60.830 66.667 4.18 0.00 0.00 6.13
407 408 3.204827 CTCCTCCATTTGCGCCCG 61.205 66.667 4.18 0.00 0.00 6.13
408 409 3.680620 CTCCTCCATTTGCGCCCGA 62.681 63.158 4.18 0.00 0.00 5.14
409 410 3.204827 CCTCCATTTGCGCCCGAG 61.205 66.667 4.18 2.01 0.00 4.63
410 411 3.880846 CTCCATTTGCGCCCGAGC 61.881 66.667 4.18 0.00 37.71 5.03
423 424 3.893763 CGAGCCGAGCGAGGTGAT 61.894 66.667 2.58 0.00 0.00 3.06
424 425 2.543802 CGAGCCGAGCGAGGTGATA 61.544 63.158 2.58 0.00 0.00 2.15
425 426 1.284408 GAGCCGAGCGAGGTGATAG 59.716 63.158 2.58 0.00 0.00 2.08
426 427 2.136196 GAGCCGAGCGAGGTGATAGG 62.136 65.000 2.58 0.00 0.00 2.57
427 428 3.043419 CCGAGCGAGGTGATAGGG 58.957 66.667 0.00 0.00 0.00 3.53
428 429 2.336809 CGAGCGAGGTGATAGGGC 59.663 66.667 0.00 0.00 0.00 5.19
429 430 2.336809 GAGCGAGGTGATAGGGCG 59.663 66.667 0.00 0.00 0.00 6.13
431 432 4.971125 GCGAGGTGATAGGGCGCC 62.971 72.222 21.18 21.18 41.65 6.53
432 433 4.647615 CGAGGTGATAGGGCGCCG 62.648 72.222 22.54 0.00 43.18 6.46
433 434 4.971125 GAGGTGATAGGGCGCCGC 62.971 72.222 22.54 13.90 43.18 6.53
435 436 3.612681 GGTGATAGGGCGCCGCTA 61.613 66.667 22.54 22.15 33.62 4.26
436 437 2.657237 GTGATAGGGCGCCGCTAT 59.343 61.111 27.40 27.40 41.26 2.97
438 439 3.289525 GATAGGGCGCCGCTATCT 58.710 61.111 34.45 24.45 46.20 1.98
439 440 1.592223 GATAGGGCGCCGCTATCTT 59.408 57.895 34.45 19.75 46.20 2.40
440 441 0.737715 GATAGGGCGCCGCTATCTTG 60.738 60.000 34.45 0.00 46.20 3.02
441 442 2.788191 ATAGGGCGCCGCTATCTTGC 62.788 60.000 23.80 8.25 35.20 4.01
442 443 4.918201 GGGCGCCGCTATCTTGCT 62.918 66.667 22.54 0.00 0.00 3.91
443 444 2.897350 GGCGCCGCTATCTTGCTT 60.897 61.111 12.58 0.00 0.00 3.91
444 445 2.628657 GCGCCGCTATCTTGCTTC 59.371 61.111 0.00 0.00 0.00 3.86
445 446 1.884926 GCGCCGCTATCTTGCTTCT 60.885 57.895 0.00 0.00 0.00 2.85
446 447 1.826299 GCGCCGCTATCTTGCTTCTC 61.826 60.000 0.00 0.00 0.00 2.87
447 448 1.218230 CGCCGCTATCTTGCTTCTCC 61.218 60.000 0.00 0.00 0.00 3.71
448 449 0.105778 GCCGCTATCTTGCTTCTCCT 59.894 55.000 0.00 0.00 0.00 3.69
449 450 1.474143 GCCGCTATCTTGCTTCTCCTT 60.474 52.381 0.00 0.00 0.00 3.36
450 451 2.208431 CCGCTATCTTGCTTCTCCTTG 58.792 52.381 0.00 0.00 0.00 3.61
451 452 1.596727 CGCTATCTTGCTTCTCCTTGC 59.403 52.381 0.00 0.00 0.00 4.01
452 453 2.636830 GCTATCTTGCTTCTCCTTGCA 58.363 47.619 0.00 0.00 37.42 4.08
453 454 2.354199 GCTATCTTGCTTCTCCTTGCAC 59.646 50.000 0.00 0.00 39.05 4.57
454 455 1.446907 ATCTTGCTTCTCCTTGCACG 58.553 50.000 0.00 0.00 39.05 5.34
455 456 1.208614 CTTGCTTCTCCTTGCACGC 59.791 57.895 0.00 0.00 39.05 5.34
456 457 2.504461 CTTGCTTCTCCTTGCACGCG 62.504 60.000 3.53 3.53 39.05 6.01
457 458 4.451652 GCTTCTCCTTGCACGCGC 62.452 66.667 5.73 0.00 39.24 6.86
458 459 3.793144 CTTCTCCTTGCACGCGCC 61.793 66.667 5.73 0.00 37.32 6.53
459 460 4.617520 TTCTCCTTGCACGCGCCA 62.618 61.111 5.73 0.00 37.32 5.69
462 463 4.393155 TCCTTGCACGCGCCAGAT 62.393 61.111 5.73 0.00 37.32 2.90
463 464 4.170062 CCTTGCACGCGCCAGATG 62.170 66.667 5.73 0.00 37.32 2.90
464 465 3.425713 CTTGCACGCGCCAGATGT 61.426 61.111 5.73 0.00 37.32 3.06
465 466 2.969806 CTTGCACGCGCCAGATGTT 61.970 57.895 5.73 0.00 37.32 2.71
466 467 3.252665 TTGCACGCGCCAGATGTTG 62.253 57.895 5.73 0.00 37.32 3.33
468 469 4.465512 CACGCGCCAGATGTTGCC 62.466 66.667 5.73 0.00 0.00 4.52
470 471 4.465512 CGCGCCAGATGTTGCCAC 62.466 66.667 0.00 0.00 0.00 5.01
471 472 4.120331 GCGCCAGATGTTGCCACC 62.120 66.667 0.00 0.00 0.00 4.61
472 473 3.803082 CGCCAGATGTTGCCACCG 61.803 66.667 0.00 0.00 0.00 4.94
473 474 2.672996 GCCAGATGTTGCCACCGT 60.673 61.111 0.00 0.00 0.00 4.83
474 475 2.690778 GCCAGATGTTGCCACCGTC 61.691 63.158 0.00 0.00 0.00 4.79
475 476 2.390599 CCAGATGTTGCCACCGTCG 61.391 63.158 0.00 0.00 0.00 5.12
476 477 2.742372 AGATGTTGCCACCGTCGC 60.742 61.111 0.00 0.00 0.00 5.19
477 478 3.799755 GATGTTGCCACCGTCGCC 61.800 66.667 0.00 0.00 0.00 5.54
502 503 4.124351 CGTGGGCGGCTCGTAGAA 62.124 66.667 9.56 0.00 34.09 2.10
503 504 2.202756 GTGGGCGGCTCGTAGAAG 60.203 66.667 9.56 0.00 34.09 2.85
504 505 2.361992 TGGGCGGCTCGTAGAAGA 60.362 61.111 9.56 0.00 34.09 2.87
505 506 2.413765 GGGCGGCTCGTAGAAGAG 59.586 66.667 9.56 0.00 41.03 2.85
506 507 2.119655 GGGCGGCTCGTAGAAGAGA 61.120 63.158 9.56 0.00 40.57 3.10
507 508 1.457009 GGGCGGCTCGTAGAAGAGAT 61.457 60.000 9.56 0.00 40.57 2.75
508 509 0.039888 GGCGGCTCGTAGAAGAGATC 60.040 60.000 0.00 0.00 40.57 2.75
509 510 0.948678 GCGGCTCGTAGAAGAGATCT 59.051 55.000 0.00 0.00 40.57 2.75
510 511 1.334599 GCGGCTCGTAGAAGAGATCTG 60.335 57.143 0.00 0.00 40.57 2.90
511 512 1.334599 CGGCTCGTAGAAGAGATCTGC 60.335 57.143 0.00 0.00 40.57 4.26
515 516 3.579066 GTAGAAGAGATCTGCGGCC 57.421 57.895 0.00 0.00 39.30 6.13
516 517 0.747255 GTAGAAGAGATCTGCGGCCA 59.253 55.000 0.00 0.00 39.30 5.36
517 518 0.747255 TAGAAGAGATCTGCGGCCAC 59.253 55.000 0.00 0.00 39.30 5.01
518 519 1.522580 GAAGAGATCTGCGGCCACC 60.523 63.158 0.00 0.00 0.00 4.61
528 529 3.047877 CGGCCACCGTCAAAGGTC 61.048 66.667 2.24 0.00 43.89 3.85
529 530 3.047877 GGCCACCGTCAAAGGTCG 61.048 66.667 0.00 0.00 43.89 4.79
530 531 3.723348 GCCACCGTCAAAGGTCGC 61.723 66.667 0.00 0.00 43.89 5.19
531 532 3.047877 CCACCGTCAAAGGTCGCC 61.048 66.667 0.00 0.00 43.89 5.54
532 533 2.030562 CACCGTCAAAGGTCGCCT 59.969 61.111 0.00 0.00 43.89 5.52
533 534 1.290955 CACCGTCAAAGGTCGCCTA 59.709 57.895 0.00 0.00 43.89 3.93
534 535 0.736325 CACCGTCAAAGGTCGCCTAG 60.736 60.000 0.00 0.00 43.89 3.02
535 536 1.183676 ACCGTCAAAGGTCGCCTAGT 61.184 55.000 0.00 0.00 41.46 2.57
536 537 0.458025 CCGTCAAAGGTCGCCTAGTC 60.458 60.000 0.00 0.00 31.13 2.59
537 538 0.458025 CGTCAAAGGTCGCCTAGTCC 60.458 60.000 0.00 0.00 31.13 3.85
538 539 0.896226 GTCAAAGGTCGCCTAGTCCT 59.104 55.000 0.00 0.00 40.13 3.85
539 540 2.097825 GTCAAAGGTCGCCTAGTCCTA 58.902 52.381 0.00 0.00 37.41 2.94
540 541 2.099427 GTCAAAGGTCGCCTAGTCCTAG 59.901 54.545 0.00 0.00 37.41 3.02
541 542 2.100989 CAAAGGTCGCCTAGTCCTAGT 58.899 52.381 0.00 0.00 37.41 2.57
542 543 2.055684 AAGGTCGCCTAGTCCTAGTC 57.944 55.000 0.00 0.00 37.41 2.59
543 544 0.179051 AGGTCGCCTAGTCCTAGTCG 60.179 60.000 0.00 0.00 36.62 4.18
544 545 1.648174 GTCGCCTAGTCCTAGTCGC 59.352 63.158 0.18 0.00 34.89 5.19
545 546 1.525535 TCGCCTAGTCCTAGTCGCC 60.526 63.158 0.18 0.00 34.89 5.54
546 547 2.894565 CGCCTAGTCCTAGTCGCCG 61.895 68.421 0.96 0.00 27.81 6.46
547 548 3.032339 CCTAGTCCTAGTCGCCGC 58.968 66.667 0.96 0.00 0.00 6.53
548 549 1.822613 CCTAGTCCTAGTCGCCGCA 60.823 63.158 0.96 0.00 0.00 5.69
549 550 1.381928 CCTAGTCCTAGTCGCCGCAA 61.382 60.000 0.96 0.00 0.00 4.85
550 551 0.029567 CTAGTCCTAGTCGCCGCAAG 59.970 60.000 0.00 0.00 0.00 4.01
564 565 2.717580 CGCAAGGGTTTTAGGGTTTC 57.282 50.000 0.00 0.00 0.00 2.78
565 566 1.068816 CGCAAGGGTTTTAGGGTTTCG 60.069 52.381 0.00 0.00 0.00 3.46
566 567 1.271379 GCAAGGGTTTTAGGGTTTCGG 59.729 52.381 0.00 0.00 0.00 4.30
567 568 1.890489 CAAGGGTTTTAGGGTTTCGGG 59.110 52.381 0.00 0.00 0.00 5.14
568 569 1.448185 AGGGTTTTAGGGTTTCGGGA 58.552 50.000 0.00 0.00 0.00 5.14
569 570 1.782140 AGGGTTTTAGGGTTTCGGGAA 59.218 47.619 0.00 0.00 0.00 3.97
570 571 2.177451 AGGGTTTTAGGGTTTCGGGAAA 59.823 45.455 0.00 0.00 0.00 3.13
571 572 2.964464 GGGTTTTAGGGTTTCGGGAAAA 59.036 45.455 0.00 0.00 31.33 2.29
572 573 3.006110 GGGTTTTAGGGTTTCGGGAAAAG 59.994 47.826 0.00 0.00 31.33 2.27
573 574 3.638160 GGTTTTAGGGTTTCGGGAAAAGT 59.362 43.478 0.00 0.00 31.33 2.66
574 575 4.099881 GGTTTTAGGGTTTCGGGAAAAGTT 59.900 41.667 0.00 0.00 31.33 2.66
575 576 4.922471 TTTAGGGTTTCGGGAAAAGTTG 57.078 40.909 0.00 0.00 31.33 3.16
576 577 1.699730 AGGGTTTCGGGAAAAGTTGG 58.300 50.000 0.00 0.00 31.33 3.77
577 578 0.032952 GGGTTTCGGGAAAAGTTGGC 59.967 55.000 0.00 0.00 31.33 4.52
578 579 1.037493 GGTTTCGGGAAAAGTTGGCT 58.963 50.000 0.00 0.00 31.33 4.75
579 580 1.411246 GGTTTCGGGAAAAGTTGGCTT 59.589 47.619 0.00 0.00 36.30 4.35
580 581 2.469826 GTTTCGGGAAAAGTTGGCTTG 58.530 47.619 0.00 0.00 34.71 4.01
581 582 1.770294 TTCGGGAAAAGTTGGCTTGT 58.230 45.000 0.00 0.00 34.71 3.16
582 583 1.770294 TCGGGAAAAGTTGGCTTGTT 58.230 45.000 0.00 0.00 34.71 2.83
583 584 1.407258 TCGGGAAAAGTTGGCTTGTTG 59.593 47.619 0.00 0.00 34.71 3.33
584 585 1.581934 GGGAAAAGTTGGCTTGTTGC 58.418 50.000 0.00 0.00 41.94 4.17
594 595 2.873797 GCTTGTTGCCCCTTAGAGG 58.126 57.895 0.00 0.00 35.15 3.69
610 611 7.663043 CCTTAGAGGGTGAAGACTAATTAGT 57.337 40.000 18.05 18.05 39.71 2.24
611 612 8.080363 CCTTAGAGGGTGAAGACTAATTAGTT 57.920 38.462 18.96 4.55 36.50 2.24
612 613 8.541234 CCTTAGAGGGTGAAGACTAATTAGTTT 58.459 37.037 18.96 11.07 36.50 2.66
613 614 9.945904 CTTAGAGGGTGAAGACTAATTAGTTTT 57.054 33.333 18.96 18.72 36.50 2.43
614 615 9.720769 TTAGAGGGTGAAGACTAATTAGTTTTG 57.279 33.333 22.25 0.00 36.50 2.44
615 616 7.974504 AGAGGGTGAAGACTAATTAGTTTTGA 58.025 34.615 22.25 13.64 36.50 2.69
616 617 8.437575 AGAGGGTGAAGACTAATTAGTTTTGAA 58.562 33.333 22.25 10.30 36.50 2.69
617 618 8.622948 AGGGTGAAGACTAATTAGTTTTGAAG 57.377 34.615 22.25 0.00 36.50 3.02
618 619 8.437575 AGGGTGAAGACTAATTAGTTTTGAAGA 58.562 33.333 22.25 4.83 36.50 2.87
619 620 9.232473 GGGTGAAGACTAATTAGTTTTGAAGAT 57.768 33.333 22.25 1.46 36.50 2.40
621 622 9.548208 GTGAAGACTAATTAGTTTTGAAGATGC 57.452 33.333 22.25 9.40 36.50 3.91
622 623 8.730680 TGAAGACTAATTAGTTTTGAAGATGCC 58.269 33.333 22.25 8.81 36.50 4.40
623 624 7.631717 AGACTAATTAGTTTTGAAGATGCCC 57.368 36.000 18.96 2.29 36.50 5.36
624 625 6.316390 AGACTAATTAGTTTTGAAGATGCCCG 59.684 38.462 18.96 0.00 36.50 6.13
625 626 5.944007 ACTAATTAGTTTTGAAGATGCCCGT 59.056 36.000 12.50 0.00 31.13 5.28
626 627 7.107542 ACTAATTAGTTTTGAAGATGCCCGTA 58.892 34.615 12.50 0.00 31.13 4.02
627 628 7.773690 ACTAATTAGTTTTGAAGATGCCCGTAT 59.226 33.333 12.50 0.00 31.13 3.06
628 629 7.404671 AATTAGTTTTGAAGATGCCCGTATT 57.595 32.000 0.00 0.00 0.00 1.89
629 630 4.965119 AGTTTTGAAGATGCCCGTATTC 57.035 40.909 0.00 0.00 0.00 1.75
630 631 3.694566 AGTTTTGAAGATGCCCGTATTCC 59.305 43.478 0.00 0.00 0.00 3.01
631 632 3.644966 TTTGAAGATGCCCGTATTCCT 57.355 42.857 0.00 0.00 0.00 3.36
632 633 2.910688 TGAAGATGCCCGTATTCCTC 57.089 50.000 0.00 0.00 0.00 3.71
633 634 1.416401 TGAAGATGCCCGTATTCCTCC 59.584 52.381 0.00 0.00 0.00 4.30
634 635 0.393077 AAGATGCCCGTATTCCTCCG 59.607 55.000 0.00 0.00 0.00 4.63
635 636 0.759436 AGATGCCCGTATTCCTCCGT 60.759 55.000 0.00 0.00 0.00 4.69
636 637 0.600255 GATGCCCGTATTCCTCCGTG 60.600 60.000 0.00 0.00 0.00 4.94
637 638 1.335132 ATGCCCGTATTCCTCCGTGT 61.335 55.000 0.00 0.00 0.00 4.49
638 639 1.520787 GCCCGTATTCCTCCGTGTG 60.521 63.158 0.00 0.00 0.00 3.82
639 640 1.895238 CCCGTATTCCTCCGTGTGT 59.105 57.895 0.00 0.00 0.00 3.72
640 641 0.459585 CCCGTATTCCTCCGTGTGTG 60.460 60.000 0.00 0.00 0.00 3.82
641 642 0.245539 CCGTATTCCTCCGTGTGTGT 59.754 55.000 0.00 0.00 0.00 3.72
642 643 1.473677 CCGTATTCCTCCGTGTGTGTA 59.526 52.381 0.00 0.00 0.00 2.90
643 644 2.479049 CCGTATTCCTCCGTGTGTGTAG 60.479 54.545 0.00 0.00 0.00 2.74
644 645 2.479049 CGTATTCCTCCGTGTGTGTAGG 60.479 54.545 0.00 0.00 0.00 3.18
645 646 1.933021 ATTCCTCCGTGTGTGTAGGA 58.067 50.000 0.00 0.00 36.34 2.94
646 647 1.933021 TTCCTCCGTGTGTGTAGGAT 58.067 50.000 0.00 0.00 37.94 3.24
647 648 1.933021 TCCTCCGTGTGTGTAGGATT 58.067 50.000 0.00 0.00 33.18 3.01
648 649 3.090210 TCCTCCGTGTGTGTAGGATTA 57.910 47.619 0.00 0.00 33.18 1.75
652 653 3.018856 TCCGTGTGTGTAGGATTATCGT 58.981 45.455 0.00 0.00 0.00 3.73
662 663 1.129058 GGATTATCGTGTGGACCCCT 58.871 55.000 0.00 0.00 0.00 4.79
663 664 2.090943 AGGATTATCGTGTGGACCCCTA 60.091 50.000 0.00 0.00 0.00 3.53
685 686 5.854010 ATATCATACAGTGGTCAACGAGT 57.146 39.130 0.00 0.00 0.00 4.18
687 688 1.726791 CATACAGTGGTCAACGAGTGC 59.273 52.381 0.00 0.00 0.00 4.40
693 694 2.022129 GGTCAACGAGTGCTCACGG 61.022 63.158 10.22 0.00 36.20 4.94
817 818 0.951558 GGATGTGACAAAGCACCGTT 59.048 50.000 0.00 0.00 37.99 4.44
866 867 1.228894 TCAGCTCGGTGTCTTCCCT 60.229 57.895 0.00 0.00 0.00 4.20
867 868 1.079543 CAGCTCGGTGTCTTCCCTG 60.080 63.158 0.00 0.00 0.00 4.45
883 884 1.291588 CTGACCTTCGCAGCTCTGT 59.708 57.895 0.00 0.00 0.00 3.41
892 893 2.816958 CAGCTCTGTTCCGCGCAT 60.817 61.111 8.75 0.00 0.00 4.73
1029 1032 1.222387 CTCCGACTCCGACTCCTCT 59.778 63.158 0.00 0.00 38.22 3.69
1221 1572 1.956629 ATACCCTGGTCCGCACGAAG 61.957 60.000 0.00 0.00 0.00 3.79
1259 1610 4.792804 GCTCCTGCCTCTGCACCC 62.793 72.222 0.00 0.00 44.23 4.61
1277 1628 2.494918 GTGTAGGATGCGCGGAGT 59.505 61.111 8.83 0.00 0.00 3.85
1322 1673 4.393155 TTCGTCAGCATGCCCGCT 62.393 61.111 15.66 0.00 45.21 5.52
1371 1722 2.284625 ATGCCCCTGACGACCTCA 60.285 61.111 0.00 0.00 0.00 3.86
1488 1840 6.197282 GCTTCTTTTGCTTTTCACACTAGTTC 59.803 38.462 0.00 0.00 0.00 3.01
1494 1846 5.428253 TGCTTTTCACACTAGTTCAGTTCT 58.572 37.500 0.00 0.00 34.26 3.01
1508 1860 5.971202 AGTTCAGTTCTTGTTATTTTGCACG 59.029 36.000 0.00 0.00 0.00 5.34
1555 1907 8.805175 CCATTCTCTGATCTGACTATAAGATGT 58.195 37.037 0.00 0.00 34.50 3.06
1560 1912 7.720442 TCTGATCTGACTATAAGATGTTGTGG 58.280 38.462 0.00 0.00 34.50 4.17
1791 2289 2.347490 CTTACGTGCCAGGGCTGT 59.653 61.111 12.19 12.19 42.51 4.40
2071 2569 2.313317 GCCATGGGTCAATGTGATCAT 58.687 47.619 15.13 0.00 35.59 2.45
2295 2793 9.810545 ATTATCAACTACTAAAGAGAAGCTCAC 57.189 33.333 0.00 0.00 32.06 3.51
2714 3212 4.219288 AGAAAATTGCAGACATGGTCTTCC 59.781 41.667 0.00 0.00 41.37 3.46
2774 3272 5.201713 TGACTTTCCACACTCAGTCTTAG 57.798 43.478 0.00 0.00 37.21 2.18
2789 3287 5.480422 TCAGTCTTAGCTGGTGAACTTGATA 59.520 40.000 0.00 0.00 37.12 2.15
2819 3317 2.965831 ACTTGGCTAGTCAACTCACTGA 59.034 45.455 5.45 0.00 28.23 3.41
3121 3619 0.339859 ATGAGCCCCTGGAGACTACA 59.660 55.000 0.00 0.00 0.00 2.74
3613 4111 5.382618 AACATGCTCTGGATGAAAAGAAC 57.617 39.130 6.09 0.00 0.00 3.01
3867 4460 5.473066 AAGCTGCAGTTGGACATTATTTT 57.527 34.783 16.64 0.00 0.00 1.82
3868 4461 4.813027 AGCTGCAGTTGGACATTATTTTG 58.187 39.130 16.64 0.00 0.00 2.44
4035 4628 6.122277 CCCAATACATAATGGAGTCACAAGT 58.878 40.000 0.00 0.00 39.12 3.16
4522 5118 9.716531 ACACTTGTAATGGATGATAGTATGATG 57.283 33.333 0.00 0.00 0.00 3.07
4830 5426 5.703876 GAACTTAGTTCAATGCTTCCCTTG 58.296 41.667 19.00 0.00 41.62 3.61
4994 5592 4.141505 TGTTCTAGCTTTATGGCCTATGCA 60.142 41.667 3.32 0.00 40.13 3.96
5073 5686 2.378634 CCCTCCCTCCTCCGCATTT 61.379 63.158 0.00 0.00 0.00 2.32
5127 5754 9.213799 TGGTTTTGGAATTAAATAATTGTGCTC 57.786 29.630 3.25 0.00 36.13 4.26
5277 5904 9.136952 CAGAAAAAGCAGAAAAGAGAATATTGG 57.863 33.333 0.00 0.00 0.00 3.16
5754 6381 5.127845 ACAAACTGAAGTCAGAGTCTCAGAA 59.872 40.000 15.15 0.00 46.59 3.02
5794 6421 8.388656 AGGGGTTAGTGATAACTTTGATAGAA 57.611 34.615 0.00 0.00 0.00 2.10
5858 6485 0.961019 TGCTTCAAATGACCACCAGC 59.039 50.000 0.00 0.00 0.00 4.85
5876 6503 5.122396 CACCAGCTGTATTTGGAAAGAGTAC 59.878 44.000 13.81 0.00 37.89 2.73
5877 6504 5.221843 ACCAGCTGTATTTGGAAAGAGTACA 60.222 40.000 13.81 0.00 37.89 2.90
5904 6531 2.499289 TGGAGGAAGATCTCAGAACTGC 59.501 50.000 0.00 0.00 35.58 4.40
6022 6649 5.989777 TGAACAAACTACAGTAGAAAGAGGC 59.010 40.000 14.94 0.00 0.00 4.70
6336 6963 6.259608 AGTTAAATCTTGAATCTCATGCTCGG 59.740 38.462 0.00 0.00 0.00 4.63
6589 7216 3.118038 TGCCAAGTCTGTAAAACAGGAGT 60.118 43.478 7.18 0.00 45.94 3.85
6773 7400 4.380843 TTGAAGATTTGGTAAGCCCTCA 57.619 40.909 0.00 0.00 0.00 3.86
6807 7438 5.400485 GCTTCATTGCTTTGTTACTTGTCTG 59.600 40.000 0.00 0.00 0.00 3.51
6814 7445 4.554723 GCTTTGTTACTTGTCTGCGTGATT 60.555 41.667 0.00 0.00 0.00 2.57
7120 7876 2.117156 CCCTACTGCTGCACATGCC 61.117 63.158 0.00 0.00 41.18 4.40
7183 7939 1.446966 GGGCTCAGAGTCTGAACGC 60.447 63.158 22.83 21.65 40.18 4.84
7421 8179 8.695456 ACAAGTAATGATTTTCAAACTCAGGTT 58.305 29.630 0.00 0.00 37.24 3.50
7452 8210 5.656859 GGGGAACTAAAAGGCATATCTTTGT 59.343 40.000 0.00 0.00 37.09 2.83
7475 8233 7.543756 TGTTCCGAATTTGAACTTTTCTCTTT 58.456 30.769 17.49 0.00 42.04 2.52
7766 8524 4.994852 GTGTGGAAGTTCAGTAGTGCATAA 59.005 41.667 5.01 0.00 0.00 1.90
7841 8599 3.009723 GAGCCAAATTCTGATGAACCGA 58.990 45.455 0.00 0.00 34.71 4.69
7996 8759 9.727859 ATAGTTTTACCTTTTTCTCTCTCCTTC 57.272 33.333 0.00 0.00 0.00 3.46
7997 8760 6.999272 AGTTTTACCTTTTTCTCTCTCCTTCC 59.001 38.462 0.00 0.00 0.00 3.46
7998 8761 6.765355 TTTACCTTTTTCTCTCTCCTTCCT 57.235 37.500 0.00 0.00 0.00 3.36
8002 8765 6.436027 ACCTTTTTCTCTCTCCTTCCTTTTT 58.564 36.000 0.00 0.00 0.00 1.94
8145 8908 3.585862 TGTTACGCTGGAGAAGTGAATC 58.414 45.455 0.00 0.00 38.83 2.52
8195 8958 2.905415 TGGGAAGCAAGATGTCCAAT 57.095 45.000 0.00 0.00 32.70 3.16
8217 8980 2.028476 TGGCTATAGCGTGAAGTGTTGT 60.028 45.455 18.30 0.00 43.26 3.32
8222 8985 5.518847 GCTATAGCGTGAAGTGTTGTTGATA 59.481 40.000 9.40 0.00 0.00 2.15
8236 9000 7.653311 AGTGTTGTTGATAAAATGAAAGGCTTC 59.347 33.333 0.00 0.00 0.00 3.86
8237 9001 6.928492 TGTTGTTGATAAAATGAAAGGCTTCC 59.072 34.615 0.00 0.00 0.00 3.46
8265 9029 5.232414 ACTCGAGCTTATTTCTTGTTATCGC 59.768 40.000 13.61 0.00 0.00 4.58
8317 9081 4.444449 GCAATTTATTACTCCCTCCGTCCT 60.444 45.833 0.00 0.00 0.00 3.85
8322 9086 4.750021 ATTACTCCCTCCGTCCTAAAAC 57.250 45.455 0.00 0.00 0.00 2.43
8334 9098 6.001460 TCCGTCCTAAAACAAATGTCTCAAT 58.999 36.000 0.00 0.00 0.00 2.57
8338 9102 9.672086 CGTCCTAAAACAAATGTCTCAATTTTA 57.328 29.630 0.00 0.00 0.00 1.52
8370 9184 8.085909 GCTTTAGAGACAGAGGGAGTAATTATC 58.914 40.741 0.00 0.00 0.00 1.75
8388 9202 0.906066 TCATGCGGTGGTAAGGCTTA 59.094 50.000 2.04 2.04 0.00 3.09
8428 9242 5.540337 TGAAGGTGTATCATGACCTATCCTC 59.460 44.000 0.00 0.00 42.03 3.71
8519 9333 5.888161 AGAATTCCTACTTTAATGCCACCAG 59.112 40.000 0.65 0.00 0.00 4.00
8554 9368 5.879223 TCAACAAAACGGAACTTACAAGGTA 59.121 36.000 0.00 0.00 0.00 3.08
8623 9437 3.518634 AGACTTCTCGCTCCTCAATTC 57.481 47.619 0.00 0.00 0.00 2.17
8637 9458 4.957327 TCCTCAATTCATTGATCATTGGCA 59.043 37.500 15.66 5.58 44.92 4.92
8643 9464 4.681074 TCATTGATCATTGGCATGCATT 57.319 36.364 21.36 0.00 0.00 3.56
8644 9465 4.627058 TCATTGATCATTGGCATGCATTC 58.373 39.130 21.36 2.31 0.00 2.67
8653 9474 0.745845 GGCATGCATTCACCGACTCT 60.746 55.000 21.36 0.00 0.00 3.24
8664 9485 0.396435 ACCGACTCTGCAACCATTGA 59.604 50.000 0.00 0.00 0.00 2.57
8724 9546 1.470494 ACACACGTGTTTGCAATGTGA 59.530 42.857 28.04 0.84 42.23 3.58
8727 9549 1.065401 CACGTGTTTGCAATGTGACCT 59.935 47.619 7.58 0.00 36.14 3.85
8910 9846 4.826733 TGGACATAAGACAAGTGTTTGCAT 59.173 37.500 0.00 0.00 37.85 3.96
8911 9847 5.048782 TGGACATAAGACAAGTGTTTGCATC 60.049 40.000 0.00 0.00 37.85 3.91
8912 9848 5.034554 ACATAAGACAAGTGTTTGCATCG 57.965 39.130 0.00 0.00 37.85 3.84
8913 9849 2.405892 AAGACAAGTGTTTGCATCGC 57.594 45.000 0.00 0.00 37.85 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 2.927553 GCTGAAATTTGATCGGCTGT 57.072 45.000 0.00 0.00 44.14 4.40
53 54 3.549625 GCCATCGGAGCTGAAATTTGATC 60.550 47.826 0.00 0.00 0.00 2.92
132 133 2.110899 AGATCGTGTATGGGAGGGATCT 59.889 50.000 0.00 0.00 36.66 2.75
144 145 0.534427 AGCGGGATCGAGATCGTGTA 60.534 55.000 6.96 0.00 38.69 2.90
159 160 0.040425 CGGAGTTTGAAACCAAGCGG 60.040 55.000 4.14 0.00 38.77 5.52
165 166 0.658897 TTGTCGCGGAGTTTGAAACC 59.341 50.000 6.13 0.00 0.00 3.27
168 169 1.370609 TGTTTGTCGCGGAGTTTGAA 58.629 45.000 6.13 0.00 0.00 2.69
179 180 1.165270 GGGGGAGAACATGTTTGTCG 58.835 55.000 13.36 0.00 34.06 4.35
183 184 2.178984 TCCTTTGGGGGAGAACATGTTT 59.821 45.455 13.36 2.74 35.33 2.83
201 202 3.474570 GGCCTGGCGATCTGTCCT 61.475 66.667 13.40 0.00 0.00 3.85
206 207 2.525381 CTAGGGGCCTGGCGATCT 60.525 66.667 13.40 11.88 0.00 2.75
207 208 3.631046 CCTAGGGGCCTGGCGATC 61.631 72.222 13.40 4.69 0.00 3.69
232 233 3.704231 ATGCCCTACGCCCAGCTTG 62.704 63.158 0.00 0.00 36.24 4.01
233 234 2.983879 AATGCCCTACGCCCAGCTT 61.984 57.895 0.00 0.00 36.24 3.74
234 235 3.411517 AATGCCCTACGCCCAGCT 61.412 61.111 0.00 0.00 36.24 4.24
235 236 3.211963 CAATGCCCTACGCCCAGC 61.212 66.667 0.00 0.00 36.24 4.85
236 237 2.516930 CCAATGCCCTACGCCCAG 60.517 66.667 0.00 0.00 36.24 4.45
237 238 3.012119 TCCAATGCCCTACGCCCA 61.012 61.111 0.00 0.00 36.24 5.36
238 239 2.056906 ATCTCCAATGCCCTACGCCC 62.057 60.000 0.00 0.00 36.24 6.13
239 240 0.603975 GATCTCCAATGCCCTACGCC 60.604 60.000 0.00 0.00 36.24 5.68
240 241 0.946221 CGATCTCCAATGCCCTACGC 60.946 60.000 0.00 0.00 38.31 4.42
241 242 0.389391 ACGATCTCCAATGCCCTACG 59.611 55.000 0.00 0.00 0.00 3.51
242 243 1.689273 AGACGATCTCCAATGCCCTAC 59.311 52.381 0.00 0.00 0.00 3.18
243 244 1.688735 CAGACGATCTCCAATGCCCTA 59.311 52.381 0.00 0.00 0.00 3.53
244 245 0.467384 CAGACGATCTCCAATGCCCT 59.533 55.000 0.00 0.00 0.00 5.19
245 246 0.533755 CCAGACGATCTCCAATGCCC 60.534 60.000 0.00 0.00 0.00 5.36
246 247 0.465705 TCCAGACGATCTCCAATGCC 59.534 55.000 0.00 0.00 0.00 4.40
247 248 2.141517 CATCCAGACGATCTCCAATGC 58.858 52.381 0.00 0.00 0.00 3.56
248 249 3.129109 CACATCCAGACGATCTCCAATG 58.871 50.000 0.00 0.00 0.00 2.82
249 250 2.103771 CCACATCCAGACGATCTCCAAT 59.896 50.000 0.00 0.00 0.00 3.16
250 251 1.482182 CCACATCCAGACGATCTCCAA 59.518 52.381 0.00 0.00 0.00 3.53
251 252 1.114627 CCACATCCAGACGATCTCCA 58.885 55.000 0.00 0.00 0.00 3.86
252 253 1.403814 TCCACATCCAGACGATCTCC 58.596 55.000 0.00 0.00 0.00 3.71
253 254 2.690497 TCTTCCACATCCAGACGATCTC 59.310 50.000 0.00 0.00 0.00 2.75
254 255 2.692557 CTCTTCCACATCCAGACGATCT 59.307 50.000 0.00 0.00 0.00 2.75
255 256 2.690497 TCTCTTCCACATCCAGACGATC 59.310 50.000 0.00 0.00 0.00 3.69
256 257 2.739943 TCTCTTCCACATCCAGACGAT 58.260 47.619 0.00 0.00 0.00 3.73
257 258 2.215942 TCTCTTCCACATCCAGACGA 57.784 50.000 0.00 0.00 0.00 4.20
258 259 3.193263 CAATCTCTTCCACATCCAGACG 58.807 50.000 0.00 0.00 0.00 4.18
259 260 2.941720 GCAATCTCTTCCACATCCAGAC 59.058 50.000 0.00 0.00 0.00 3.51
260 261 2.419159 CGCAATCTCTTCCACATCCAGA 60.419 50.000 0.00 0.00 0.00 3.86
261 262 1.938577 CGCAATCTCTTCCACATCCAG 59.061 52.381 0.00 0.00 0.00 3.86
262 263 1.554617 TCGCAATCTCTTCCACATCCA 59.445 47.619 0.00 0.00 0.00 3.41
263 264 2.315925 TCGCAATCTCTTCCACATCC 57.684 50.000 0.00 0.00 0.00 3.51
264 265 4.371786 TGTATCGCAATCTCTTCCACATC 58.628 43.478 0.00 0.00 0.00 3.06
265 266 4.100035 TCTGTATCGCAATCTCTTCCACAT 59.900 41.667 0.00 0.00 0.00 3.21
266 267 3.447229 TCTGTATCGCAATCTCTTCCACA 59.553 43.478 0.00 0.00 0.00 4.17
267 268 4.046938 TCTGTATCGCAATCTCTTCCAC 57.953 45.455 0.00 0.00 0.00 4.02
268 269 4.433615 GTTCTGTATCGCAATCTCTTCCA 58.566 43.478 0.00 0.00 0.00 3.53
269 270 3.804873 GGTTCTGTATCGCAATCTCTTCC 59.195 47.826 0.00 0.00 0.00 3.46
270 271 4.688021 AGGTTCTGTATCGCAATCTCTTC 58.312 43.478 0.00 0.00 0.00 2.87
271 272 4.744795 AGGTTCTGTATCGCAATCTCTT 57.255 40.909 0.00 0.00 0.00 2.85
272 273 4.437239 CAAGGTTCTGTATCGCAATCTCT 58.563 43.478 0.00 0.00 0.00 3.10
273 274 3.001736 GCAAGGTTCTGTATCGCAATCTC 59.998 47.826 0.00 0.00 0.00 2.75
274 275 2.939103 GCAAGGTTCTGTATCGCAATCT 59.061 45.455 0.00 0.00 0.00 2.40
275 276 2.032178 GGCAAGGTTCTGTATCGCAATC 59.968 50.000 0.00 0.00 0.00 2.67
276 277 2.017049 GGCAAGGTTCTGTATCGCAAT 58.983 47.619 0.00 0.00 0.00 3.56
277 278 1.448985 GGCAAGGTTCTGTATCGCAA 58.551 50.000 0.00 0.00 0.00 4.85
278 279 0.392461 GGGCAAGGTTCTGTATCGCA 60.392 55.000 0.00 0.00 0.00 5.10
279 280 1.429148 CGGGCAAGGTTCTGTATCGC 61.429 60.000 0.00 0.00 0.00 4.58
280 281 1.429148 GCGGGCAAGGTTCTGTATCG 61.429 60.000 0.00 0.00 0.00 2.92
281 282 1.095807 GGCGGGCAAGGTTCTGTATC 61.096 60.000 0.00 0.00 0.00 2.24
282 283 1.077716 GGCGGGCAAGGTTCTGTAT 60.078 57.895 0.00 0.00 0.00 2.29
283 284 2.349755 GGCGGGCAAGGTTCTGTA 59.650 61.111 0.00 0.00 0.00 2.74
287 288 4.397832 TACCGGCGGGCAAGGTTC 62.398 66.667 31.78 0.00 39.31 3.62
288 289 4.404098 CTACCGGCGGGCAAGGTT 62.404 66.667 31.78 9.78 39.31 3.50
295 296 4.832608 GAAGTGGCTACCGGCGGG 62.833 72.222 31.78 14.80 42.94 6.13
298 299 4.078516 ACCGAAGTGGCTACCGGC 62.079 66.667 15.89 0.00 45.29 6.13
299 300 2.125673 CACCGAAGTGGCTACCGG 60.126 66.667 14.69 14.69 46.65 5.28
300 301 2.813908 GCACCGAAGTGGCTACCG 60.814 66.667 0.00 0.00 44.69 4.02
301 302 1.741770 CAGCACCGAAGTGGCTACC 60.742 63.158 0.00 0.00 44.69 3.18
302 303 2.391389 GCAGCACCGAAGTGGCTAC 61.391 63.158 0.00 0.00 44.69 3.58
303 304 2.047274 GCAGCACCGAAGTGGCTA 60.047 61.111 0.00 0.00 44.69 3.93
304 305 4.254709 TGCAGCACCGAAGTGGCT 62.255 61.111 0.00 0.00 44.69 4.75
305 306 4.030452 GTGCAGCACCGAAGTGGC 62.030 66.667 15.27 0.00 44.69 5.01
306 307 3.357079 GGTGCAGCACCGAAGTGG 61.357 66.667 28.91 0.00 44.95 4.00
314 315 0.454600 CTTGGATGATGGTGCAGCAC 59.545 55.000 22.79 17.97 30.87 4.40
315 316 0.038599 ACTTGGATGATGGTGCAGCA 59.961 50.000 22.56 22.56 33.25 4.41
316 317 0.737219 GACTTGGATGATGGTGCAGC 59.263 55.000 9.47 9.47 0.00 5.25
317 318 2.118313 TGACTTGGATGATGGTGCAG 57.882 50.000 0.00 0.00 0.00 4.41
318 319 2.646930 GATGACTTGGATGATGGTGCA 58.353 47.619 0.00 0.00 0.00 4.57
319 320 1.952296 GGATGACTTGGATGATGGTGC 59.048 52.381 0.00 0.00 0.00 5.01
320 321 3.286329 TGGATGACTTGGATGATGGTG 57.714 47.619 0.00 0.00 0.00 4.17
321 322 3.460712 TGATGGATGACTTGGATGATGGT 59.539 43.478 0.00 0.00 0.00 3.55
322 323 3.819337 GTGATGGATGACTTGGATGATGG 59.181 47.826 0.00 0.00 0.00 3.51
323 324 3.819337 GGTGATGGATGACTTGGATGATG 59.181 47.826 0.00 0.00 0.00 3.07
324 325 3.460712 TGGTGATGGATGACTTGGATGAT 59.539 43.478 0.00 0.00 0.00 2.45
325 326 2.845586 TGGTGATGGATGACTTGGATGA 59.154 45.455 0.00 0.00 0.00 2.92
326 327 3.118149 TCTGGTGATGGATGACTTGGATG 60.118 47.826 0.00 0.00 0.00 3.51
327 328 3.117745 TCTGGTGATGGATGACTTGGAT 58.882 45.455 0.00 0.00 0.00 3.41
328 329 2.502947 CTCTGGTGATGGATGACTTGGA 59.497 50.000 0.00 0.00 0.00 3.53
329 330 2.421107 CCTCTGGTGATGGATGACTTGG 60.421 54.545 0.00 0.00 0.00 3.61
330 331 2.915349 CCTCTGGTGATGGATGACTTG 58.085 52.381 0.00 0.00 0.00 3.16
331 332 1.211457 GCCTCTGGTGATGGATGACTT 59.789 52.381 0.00 0.00 0.00 3.01
332 333 0.835941 GCCTCTGGTGATGGATGACT 59.164 55.000 0.00 0.00 0.00 3.41
333 334 0.531532 CGCCTCTGGTGATGGATGAC 60.532 60.000 0.00 0.00 34.74 3.06
334 335 0.977627 ACGCCTCTGGTGATGGATGA 60.978 55.000 4.02 0.00 36.58 2.92
335 336 0.752658 TACGCCTCTGGTGATGGATG 59.247 55.000 4.02 0.00 36.58 3.51
336 337 1.043816 CTACGCCTCTGGTGATGGAT 58.956 55.000 4.02 0.00 36.58 3.41
337 338 1.676678 GCTACGCCTCTGGTGATGGA 61.677 60.000 4.02 0.00 36.58 3.41
338 339 1.227380 GCTACGCCTCTGGTGATGG 60.227 63.158 4.02 0.00 36.58 3.51
339 340 1.227380 GGCTACGCCTCTGGTGATG 60.227 63.158 4.02 0.00 46.69 3.07
340 341 3.221222 GGCTACGCCTCTGGTGAT 58.779 61.111 4.02 0.00 46.69 3.06
350 351 2.494677 TCTGAGGAAGAGGCTACGC 58.505 57.895 0.00 0.00 0.00 4.42
358 359 6.603997 GGTAAACTAGACATCTCTGAGGAAGA 59.396 42.308 4.59 0.00 0.00 2.87
359 360 6.459024 CGGTAAACTAGACATCTCTGAGGAAG 60.459 46.154 4.59 0.00 0.00 3.46
360 361 5.357314 CGGTAAACTAGACATCTCTGAGGAA 59.643 44.000 4.59 0.00 0.00 3.36
361 362 4.882427 CGGTAAACTAGACATCTCTGAGGA 59.118 45.833 4.59 0.00 0.00 3.71
362 363 4.882427 TCGGTAAACTAGACATCTCTGAGG 59.118 45.833 4.59 0.00 0.00 3.86
363 364 5.504994 GCTCGGTAAACTAGACATCTCTGAG 60.505 48.000 0.00 0.00 0.00 3.35
364 365 4.335874 GCTCGGTAAACTAGACATCTCTGA 59.664 45.833 0.00 0.00 0.00 3.27
365 366 4.602995 GCTCGGTAAACTAGACATCTCTG 58.397 47.826 0.00 0.00 0.00 3.35
366 367 3.312973 CGCTCGGTAAACTAGACATCTCT 59.687 47.826 0.00 0.00 0.00 3.10
367 368 3.619729 CGCTCGGTAAACTAGACATCTC 58.380 50.000 0.00 0.00 0.00 2.75
368 369 2.223525 GCGCTCGGTAAACTAGACATCT 60.224 50.000 0.00 0.00 0.00 2.90
369 370 2.117910 GCGCTCGGTAAACTAGACATC 58.882 52.381 0.00 0.00 0.00 3.06
370 371 1.202382 GGCGCTCGGTAAACTAGACAT 60.202 52.381 7.64 0.00 0.00 3.06
371 372 0.171903 GGCGCTCGGTAAACTAGACA 59.828 55.000 7.64 0.00 0.00 3.41
372 373 0.455005 AGGCGCTCGGTAAACTAGAC 59.545 55.000 7.64 0.00 0.00 2.59
373 374 0.737219 GAGGCGCTCGGTAAACTAGA 59.263 55.000 7.64 0.00 0.00 2.43
374 375 0.248949 GGAGGCGCTCGGTAAACTAG 60.249 60.000 7.64 0.00 0.00 2.57
375 376 0.682209 AGGAGGCGCTCGGTAAACTA 60.682 55.000 7.64 0.00 0.00 2.24
376 377 1.946475 GAGGAGGCGCTCGGTAAACT 61.946 60.000 7.64 0.00 0.00 2.66
377 378 1.518792 GAGGAGGCGCTCGGTAAAC 60.519 63.158 7.64 0.00 0.00 2.01
378 379 2.718073 GGAGGAGGCGCTCGGTAAA 61.718 63.158 7.64 0.00 0.00 2.01
379 380 3.145551 GGAGGAGGCGCTCGGTAA 61.146 66.667 7.64 0.00 0.00 2.85
380 381 3.733507 ATGGAGGAGGCGCTCGGTA 62.734 63.158 7.64 0.00 0.00 4.02
382 383 3.391665 AAATGGAGGAGGCGCTCGG 62.392 63.158 7.64 0.00 0.00 4.63
383 384 2.176273 CAAATGGAGGAGGCGCTCG 61.176 63.158 7.64 0.00 0.00 5.03
384 385 2.476320 GCAAATGGAGGAGGCGCTC 61.476 63.158 7.64 2.45 0.00 5.03
385 386 2.439156 GCAAATGGAGGAGGCGCT 60.439 61.111 7.64 0.00 0.00 5.92
386 387 3.880846 CGCAAATGGAGGAGGCGC 61.881 66.667 0.00 0.00 41.27 6.53
388 389 3.521796 GGCGCAAATGGAGGAGGC 61.522 66.667 10.83 0.00 0.00 4.70
389 390 2.830370 GGGCGCAAATGGAGGAGG 60.830 66.667 10.83 0.00 0.00 4.30
390 391 3.204827 CGGGCGCAAATGGAGGAG 61.205 66.667 10.83 0.00 0.00 3.69
391 392 3.680620 CTCGGGCGCAAATGGAGGA 62.681 63.158 10.83 0.00 0.00 3.71
392 393 3.204827 CTCGGGCGCAAATGGAGG 61.205 66.667 10.83 0.00 0.00 4.30
393 394 3.880846 GCTCGGGCGCAAATGGAG 61.881 66.667 10.83 8.82 0.00 3.86
406 407 2.450960 CTATCACCTCGCTCGGCTCG 62.451 65.000 0.00 0.00 0.00 5.03
407 408 1.284408 CTATCACCTCGCTCGGCTC 59.716 63.158 0.00 0.00 0.00 4.70
408 409 2.196925 CCTATCACCTCGCTCGGCT 61.197 63.158 0.00 0.00 0.00 5.52
409 410 2.336809 CCTATCACCTCGCTCGGC 59.663 66.667 0.00 0.00 0.00 5.54
410 411 3.043419 CCCTATCACCTCGCTCGG 58.957 66.667 0.00 0.00 0.00 4.63
411 412 2.336809 GCCCTATCACCTCGCTCG 59.663 66.667 0.00 0.00 0.00 5.03
412 413 2.336809 CGCCCTATCACCTCGCTC 59.663 66.667 0.00 0.00 0.00 5.03
413 414 3.917760 GCGCCCTATCACCTCGCT 61.918 66.667 0.00 0.00 42.19 4.93
414 415 4.971125 GGCGCCCTATCACCTCGC 62.971 72.222 18.11 0.00 44.39 5.03
415 416 4.647615 CGGCGCCCTATCACCTCG 62.648 72.222 23.46 0.00 0.00 4.63
416 417 4.971125 GCGGCGCCCTATCACCTC 62.971 72.222 23.58 0.00 0.00 3.85
418 419 2.837371 GATAGCGGCGCCCTATCACC 62.837 65.000 35.55 22.29 40.42 4.02
419 420 1.446272 GATAGCGGCGCCCTATCAC 60.446 63.158 35.55 22.76 40.42 3.06
420 421 1.185618 AAGATAGCGGCGCCCTATCA 61.186 55.000 38.24 20.60 42.20 2.15
421 422 0.737715 CAAGATAGCGGCGCCCTATC 60.738 60.000 34.63 34.63 40.80 2.08
422 423 1.293498 CAAGATAGCGGCGCCCTAT 59.707 57.895 30.40 27.40 0.00 2.57
423 424 2.734591 CAAGATAGCGGCGCCCTA 59.265 61.111 30.40 22.50 0.00 3.53
424 425 4.918201 GCAAGATAGCGGCGCCCT 62.918 66.667 30.40 21.00 0.00 5.19
425 426 4.918201 AGCAAGATAGCGGCGCCC 62.918 66.667 30.40 18.08 40.15 6.13
426 427 2.886782 GAAGCAAGATAGCGGCGCC 61.887 63.158 30.40 19.07 40.15 6.53
427 428 1.826299 GAGAAGCAAGATAGCGGCGC 61.826 60.000 26.86 26.86 40.15 6.53
428 429 1.218230 GGAGAAGCAAGATAGCGGCG 61.218 60.000 0.51 0.51 40.15 6.46
429 430 0.105778 AGGAGAAGCAAGATAGCGGC 59.894 55.000 0.00 0.00 40.15 6.53
430 431 2.208431 CAAGGAGAAGCAAGATAGCGG 58.792 52.381 0.00 0.00 40.15 5.52
431 432 1.596727 GCAAGGAGAAGCAAGATAGCG 59.403 52.381 0.00 0.00 40.15 4.26
432 433 2.354199 GTGCAAGGAGAAGCAAGATAGC 59.646 50.000 0.00 0.00 43.20 2.97
433 434 2.606725 CGTGCAAGGAGAAGCAAGATAG 59.393 50.000 0.00 0.00 43.20 2.08
434 435 2.621338 CGTGCAAGGAGAAGCAAGATA 58.379 47.619 0.00 0.00 43.20 1.98
435 436 1.446907 CGTGCAAGGAGAAGCAAGAT 58.553 50.000 0.00 0.00 43.20 2.40
436 437 1.230635 GCGTGCAAGGAGAAGCAAGA 61.231 55.000 0.79 0.00 43.20 3.02
437 438 1.208614 GCGTGCAAGGAGAAGCAAG 59.791 57.895 0.79 0.00 43.20 4.01
438 439 2.606961 CGCGTGCAAGGAGAAGCAA 61.607 57.895 0.00 0.00 43.20 3.91
439 440 3.043713 CGCGTGCAAGGAGAAGCA 61.044 61.111 0.00 0.00 38.65 3.91
440 441 4.451652 GCGCGTGCAAGGAGAAGC 62.452 66.667 17.66 0.00 42.15 3.86
441 442 3.793144 GGCGCGTGCAAGGAGAAG 61.793 66.667 24.18 0.00 45.35 2.85
442 443 4.617520 TGGCGCGTGCAAGGAGAA 62.618 61.111 24.18 0.00 45.35 2.87
445 446 4.393155 ATCTGGCGCGTGCAAGGA 62.393 61.111 24.61 17.13 42.87 3.36
446 447 4.170062 CATCTGGCGCGTGCAAGG 62.170 66.667 24.61 12.46 42.87 3.61
447 448 2.969806 AACATCTGGCGCGTGCAAG 61.970 57.895 24.18 21.88 44.11 4.01
448 449 2.977456 AACATCTGGCGCGTGCAA 60.977 55.556 24.18 11.33 45.35 4.08
449 450 3.725459 CAACATCTGGCGCGTGCA 61.725 61.111 24.18 8.08 45.35 4.57
451 452 4.465512 GGCAACATCTGGCGCGTG 62.466 66.667 8.43 0.00 41.35 5.34
485 486 4.124351 TTCTACGAGCCGCCCACG 62.124 66.667 0.00 0.00 39.67 4.94
486 487 2.202756 CTTCTACGAGCCGCCCAC 60.203 66.667 0.00 0.00 0.00 4.61
487 488 2.361992 TCTTCTACGAGCCGCCCA 60.362 61.111 0.00 0.00 0.00 5.36
488 489 1.457009 ATCTCTTCTACGAGCCGCCC 61.457 60.000 0.00 0.00 0.00 6.13
489 490 0.039888 GATCTCTTCTACGAGCCGCC 60.040 60.000 0.00 0.00 0.00 6.13
490 491 0.948678 AGATCTCTTCTACGAGCCGC 59.051 55.000 0.00 0.00 30.96 6.53
491 492 1.334599 GCAGATCTCTTCTACGAGCCG 60.335 57.143 0.00 0.00 31.77 5.52
492 493 1.334599 CGCAGATCTCTTCTACGAGCC 60.335 57.143 0.00 0.00 42.75 4.70
493 494 1.334599 CCGCAGATCTCTTCTACGAGC 60.335 57.143 0.00 0.00 42.75 5.03
494 495 1.334599 GCCGCAGATCTCTTCTACGAG 60.335 57.143 0.00 0.00 42.75 4.18
495 496 0.663688 GCCGCAGATCTCTTCTACGA 59.336 55.000 0.00 0.00 42.75 3.43
496 497 0.318275 GGCCGCAGATCTCTTCTACG 60.318 60.000 0.00 0.00 40.32 3.51
497 498 0.747255 TGGCCGCAGATCTCTTCTAC 59.253 55.000 0.00 0.00 31.77 2.59
498 499 0.747255 GTGGCCGCAGATCTCTTCTA 59.253 55.000 12.58 0.00 31.77 2.10
499 500 1.519719 GTGGCCGCAGATCTCTTCT 59.480 57.895 12.58 0.00 33.90 2.85
500 501 1.522580 GGTGGCCGCAGATCTCTTC 60.523 63.158 19.98 0.00 0.00 2.87
501 502 2.586792 GGTGGCCGCAGATCTCTT 59.413 61.111 19.98 0.00 0.00 2.85
502 503 3.842923 CGGTGGCCGCAGATCTCT 61.843 66.667 19.98 0.00 41.17 3.10
512 513 3.047877 CGACCTTTGACGGTGGCC 61.048 66.667 0.00 0.00 37.42 5.36
514 515 2.162338 TAGGCGACCTTTGACGGTGG 62.162 60.000 3.71 0.00 37.42 4.61
515 516 0.736325 CTAGGCGACCTTTGACGGTG 60.736 60.000 3.71 0.00 37.42 4.94
516 517 1.183676 ACTAGGCGACCTTTGACGGT 61.184 55.000 3.71 0.00 40.80 4.83
517 518 0.458025 GACTAGGCGACCTTTGACGG 60.458 60.000 3.71 0.00 34.61 4.79
518 519 0.458025 GGACTAGGCGACCTTTGACG 60.458 60.000 3.71 0.00 34.61 4.35
519 520 0.896226 AGGACTAGGCGACCTTTGAC 59.104 55.000 3.71 0.00 33.91 3.18
520 521 2.291411 ACTAGGACTAGGCGACCTTTGA 60.291 50.000 10.81 0.00 38.71 2.69
521 522 2.099427 GACTAGGACTAGGCGACCTTTG 59.901 54.545 10.81 1.49 38.71 2.77
522 523 2.377073 GACTAGGACTAGGCGACCTTT 58.623 52.381 10.81 0.00 38.71 3.11
523 524 2.055684 GACTAGGACTAGGCGACCTT 57.944 55.000 10.81 0.00 38.71 3.50
524 525 3.804900 GACTAGGACTAGGCGACCT 57.195 57.895 10.81 3.87 40.87 3.85
529 530 3.032339 CGGCGACTAGGACTAGGC 58.968 66.667 0.00 6.72 37.83 3.93
530 531 1.381928 TTGCGGCGACTAGGACTAGG 61.382 60.000 12.98 0.00 37.49 3.02
531 532 0.029567 CTTGCGGCGACTAGGACTAG 59.970 60.000 12.98 4.86 39.04 2.57
532 533 1.381928 CCTTGCGGCGACTAGGACTA 61.382 60.000 20.29 0.00 0.00 2.59
533 534 2.711922 CCTTGCGGCGACTAGGACT 61.712 63.158 20.29 0.00 0.00 3.85
534 535 2.202756 CCTTGCGGCGACTAGGAC 60.203 66.667 20.29 0.00 0.00 3.85
535 536 3.458163 CCCTTGCGGCGACTAGGA 61.458 66.667 24.21 0.25 0.00 2.94
536 537 2.798148 AAACCCTTGCGGCGACTAGG 62.798 60.000 12.98 16.97 33.26 3.02
537 538 0.953960 AAAACCCTTGCGGCGACTAG 60.954 55.000 12.98 8.43 33.26 2.57
538 539 0.321021 TAAAACCCTTGCGGCGACTA 59.679 50.000 12.98 0.00 33.26 2.59
539 540 0.953960 CTAAAACCCTTGCGGCGACT 60.954 55.000 12.98 0.00 33.26 4.18
540 541 1.500396 CTAAAACCCTTGCGGCGAC 59.500 57.895 12.98 2.02 33.26 5.19
541 542 1.673009 CCTAAAACCCTTGCGGCGA 60.673 57.895 12.98 0.00 33.26 5.54
542 543 2.696759 CCCTAAAACCCTTGCGGCG 61.697 63.158 0.51 0.51 33.26 6.46
543 544 1.183030 AACCCTAAAACCCTTGCGGC 61.183 55.000 0.00 0.00 33.26 6.53
544 545 1.271379 GAAACCCTAAAACCCTTGCGG 59.729 52.381 0.00 0.00 37.81 5.69
545 546 1.068816 CGAAACCCTAAAACCCTTGCG 60.069 52.381 0.00 0.00 0.00 4.85
546 547 1.271379 CCGAAACCCTAAAACCCTTGC 59.729 52.381 0.00 0.00 0.00 4.01
547 548 1.890489 CCCGAAACCCTAAAACCCTTG 59.110 52.381 0.00 0.00 0.00 3.61
548 549 1.782140 TCCCGAAACCCTAAAACCCTT 59.218 47.619 0.00 0.00 0.00 3.95
549 550 1.448185 TCCCGAAACCCTAAAACCCT 58.552 50.000 0.00 0.00 0.00 4.34
550 551 2.291209 TTCCCGAAACCCTAAAACCC 57.709 50.000 0.00 0.00 0.00 4.11
551 552 3.638160 ACTTTTCCCGAAACCCTAAAACC 59.362 43.478 0.00 0.00 0.00 3.27
552 553 4.924305 ACTTTTCCCGAAACCCTAAAAC 57.076 40.909 0.00 0.00 0.00 2.43
553 554 4.099727 CCAACTTTTCCCGAAACCCTAAAA 59.900 41.667 0.00 0.00 0.00 1.52
554 555 3.637694 CCAACTTTTCCCGAAACCCTAAA 59.362 43.478 0.00 0.00 0.00 1.85
555 556 3.224269 CCAACTTTTCCCGAAACCCTAA 58.776 45.455 0.00 0.00 0.00 2.69
556 557 2.866351 CCAACTTTTCCCGAAACCCTA 58.134 47.619 0.00 0.00 0.00 3.53
557 558 1.699730 CCAACTTTTCCCGAAACCCT 58.300 50.000 0.00 0.00 0.00 4.34
558 559 0.032952 GCCAACTTTTCCCGAAACCC 59.967 55.000 0.00 0.00 0.00 4.11
559 560 1.037493 AGCCAACTTTTCCCGAAACC 58.963 50.000 0.00 0.00 0.00 3.27
560 561 2.159156 ACAAGCCAACTTTTCCCGAAAC 60.159 45.455 0.00 0.00 32.29 2.78
561 562 2.104170 ACAAGCCAACTTTTCCCGAAA 58.896 42.857 0.00 0.00 32.29 3.46
562 563 1.770294 ACAAGCCAACTTTTCCCGAA 58.230 45.000 0.00 0.00 32.29 4.30
563 564 1.407258 CAACAAGCCAACTTTTCCCGA 59.593 47.619 0.00 0.00 32.29 5.14
564 565 1.851658 CAACAAGCCAACTTTTCCCG 58.148 50.000 0.00 0.00 32.29 5.14
565 566 1.581934 GCAACAAGCCAACTTTTCCC 58.418 50.000 0.00 0.00 37.23 3.97
576 577 2.873797 CCTCTAAGGGGCAACAAGC 58.126 57.895 0.00 0.00 44.65 4.01
586 587 7.663043 ACTAATTAGTCTTCACCCTCTAAGG 57.337 40.000 12.50 0.00 34.30 2.69
587 588 9.945904 AAAACTAATTAGTCTTCACCCTCTAAG 57.054 33.333 18.28 0.00 34.99 2.18
588 589 9.720769 CAAAACTAATTAGTCTTCACCCTCTAA 57.279 33.333 18.28 0.00 34.99 2.10
589 590 9.096823 TCAAAACTAATTAGTCTTCACCCTCTA 57.903 33.333 18.28 0.00 34.99 2.43
590 591 7.974504 TCAAAACTAATTAGTCTTCACCCTCT 58.025 34.615 18.28 0.00 34.99 3.69
591 592 8.617290 TTCAAAACTAATTAGTCTTCACCCTC 57.383 34.615 18.28 0.00 34.99 4.30
592 593 8.437575 TCTTCAAAACTAATTAGTCTTCACCCT 58.562 33.333 18.28 0.00 34.99 4.34
593 594 8.617290 TCTTCAAAACTAATTAGTCTTCACCC 57.383 34.615 18.28 0.00 34.99 4.61
595 596 9.548208 GCATCTTCAAAACTAATTAGTCTTCAC 57.452 33.333 18.28 0.00 34.99 3.18
596 597 8.730680 GGCATCTTCAAAACTAATTAGTCTTCA 58.269 33.333 18.28 0.00 34.99 3.02
597 598 8.184848 GGGCATCTTCAAAACTAATTAGTCTTC 58.815 37.037 18.28 0.00 34.99 2.87
598 599 7.148239 CGGGCATCTTCAAAACTAATTAGTCTT 60.148 37.037 18.28 8.49 34.99 3.01
599 600 6.316390 CGGGCATCTTCAAAACTAATTAGTCT 59.684 38.462 18.28 1.58 34.99 3.24
600 601 6.093633 ACGGGCATCTTCAAAACTAATTAGTC 59.906 38.462 18.28 2.28 34.99 2.59
601 602 5.944007 ACGGGCATCTTCAAAACTAATTAGT 59.056 36.000 12.50 12.50 38.39 2.24
602 603 6.436843 ACGGGCATCTTCAAAACTAATTAG 57.563 37.500 11.05 11.05 0.00 1.73
603 604 8.514330 AATACGGGCATCTTCAAAACTAATTA 57.486 30.769 0.00 0.00 0.00 1.40
604 605 7.404671 AATACGGGCATCTTCAAAACTAATT 57.595 32.000 0.00 0.00 0.00 1.40
605 606 6.039382 GGAATACGGGCATCTTCAAAACTAAT 59.961 38.462 0.00 0.00 0.00 1.73
606 607 5.355910 GGAATACGGGCATCTTCAAAACTAA 59.644 40.000 0.00 0.00 0.00 2.24
607 608 4.879545 GGAATACGGGCATCTTCAAAACTA 59.120 41.667 0.00 0.00 0.00 2.24
608 609 3.694566 GGAATACGGGCATCTTCAAAACT 59.305 43.478 0.00 0.00 0.00 2.66
609 610 3.694566 AGGAATACGGGCATCTTCAAAAC 59.305 43.478 0.00 0.00 0.00 2.43
610 611 3.945285 GAGGAATACGGGCATCTTCAAAA 59.055 43.478 0.00 0.00 0.00 2.44
611 612 3.541632 GAGGAATACGGGCATCTTCAAA 58.458 45.455 0.00 0.00 0.00 2.69
612 613 2.158813 GGAGGAATACGGGCATCTTCAA 60.159 50.000 0.00 0.00 0.00 2.69
613 614 1.416401 GGAGGAATACGGGCATCTTCA 59.584 52.381 0.00 0.00 0.00 3.02
614 615 1.605712 CGGAGGAATACGGGCATCTTC 60.606 57.143 0.00 0.00 0.00 2.87
615 616 0.393077 CGGAGGAATACGGGCATCTT 59.607 55.000 0.00 0.00 0.00 2.40
616 617 0.759436 ACGGAGGAATACGGGCATCT 60.759 55.000 0.00 0.00 0.00 2.90
617 618 0.600255 CACGGAGGAATACGGGCATC 60.600 60.000 0.00 0.00 0.00 3.91
618 619 1.335132 ACACGGAGGAATACGGGCAT 61.335 55.000 0.00 0.00 36.89 4.40
619 620 1.985662 ACACGGAGGAATACGGGCA 60.986 57.895 0.00 0.00 36.89 5.36
620 621 1.520787 CACACGGAGGAATACGGGC 60.521 63.158 0.00 0.00 36.89 6.13
621 622 0.459585 CACACACGGAGGAATACGGG 60.460 60.000 0.00 0.00 39.87 5.28
622 623 0.245539 ACACACACGGAGGAATACGG 59.754 55.000 0.00 0.00 0.00 4.02
623 624 2.479049 CCTACACACACGGAGGAATACG 60.479 54.545 0.00 0.00 0.00 3.06
624 625 2.756760 TCCTACACACACGGAGGAATAC 59.243 50.000 0.00 0.00 35.12 1.89
625 626 3.090210 TCCTACACACACGGAGGAATA 57.910 47.619 0.00 0.00 35.12 1.75
626 627 1.933021 TCCTACACACACGGAGGAAT 58.067 50.000 0.00 0.00 35.12 3.01
627 628 1.933021 ATCCTACACACACGGAGGAA 58.067 50.000 0.00 0.00 41.37 3.36
628 629 1.933021 AATCCTACACACACGGAGGA 58.067 50.000 0.00 0.00 42.22 3.71
629 630 3.550233 CGATAATCCTACACACACGGAGG 60.550 52.174 0.00 0.00 0.00 4.30
630 631 3.066342 ACGATAATCCTACACACACGGAG 59.934 47.826 0.00 0.00 0.00 4.63
631 632 3.018856 ACGATAATCCTACACACACGGA 58.981 45.455 0.00 0.00 0.00 4.69
632 633 3.113322 CACGATAATCCTACACACACGG 58.887 50.000 0.00 0.00 0.00 4.94
633 634 3.546271 CACACGATAATCCTACACACACG 59.454 47.826 0.00 0.00 0.00 4.49
634 635 3.863424 CCACACGATAATCCTACACACAC 59.137 47.826 0.00 0.00 0.00 3.82
635 636 3.764972 TCCACACGATAATCCTACACACA 59.235 43.478 0.00 0.00 0.00 3.72
636 637 4.110482 GTCCACACGATAATCCTACACAC 58.890 47.826 0.00 0.00 0.00 3.82
637 638 3.131577 GGTCCACACGATAATCCTACACA 59.868 47.826 0.00 0.00 0.00 3.72
638 639 3.492137 GGGTCCACACGATAATCCTACAC 60.492 52.174 0.00 0.00 0.00 2.90
639 640 2.696707 GGGTCCACACGATAATCCTACA 59.303 50.000 0.00 0.00 0.00 2.74
640 641 2.036862 GGGGTCCACACGATAATCCTAC 59.963 54.545 0.00 0.00 0.00 3.18
641 642 2.090943 AGGGGTCCACACGATAATCCTA 60.091 50.000 0.00 0.00 0.00 2.94
642 643 1.129058 GGGGTCCACACGATAATCCT 58.871 55.000 0.00 0.00 0.00 3.24
643 644 1.129058 AGGGGTCCACACGATAATCC 58.871 55.000 0.00 0.00 0.00 3.01
644 645 5.421056 TGATATAGGGGTCCACACGATAATC 59.579 44.000 0.00 0.00 0.00 1.75
645 646 5.338632 TGATATAGGGGTCCACACGATAAT 58.661 41.667 0.00 0.00 0.00 1.28
646 647 4.743124 TGATATAGGGGTCCACACGATAA 58.257 43.478 0.00 0.00 0.00 1.75
647 648 4.391683 TGATATAGGGGTCCACACGATA 57.608 45.455 0.00 0.00 0.00 2.92
648 649 3.254093 TGATATAGGGGTCCACACGAT 57.746 47.619 0.00 0.00 0.00 3.73
652 653 4.838423 CACTGTATGATATAGGGGTCCACA 59.162 45.833 0.00 0.00 0.00 4.17
662 663 6.734871 GCACTCGTTGACCACTGTATGATATA 60.735 42.308 0.00 0.00 0.00 0.86
663 664 5.592054 CACTCGTTGACCACTGTATGATAT 58.408 41.667 0.00 0.00 0.00 1.63
685 686 1.215382 CGAGGTTGATCCGTGAGCA 59.785 57.895 0.00 0.00 41.99 4.26
687 688 0.179134 GACCGAGGTTGATCCGTGAG 60.179 60.000 0.00 0.00 41.99 3.51
693 694 1.808133 GCATCAGGACCGAGGTTGATC 60.808 57.143 6.50 0.00 0.00 2.92
730 731 2.355363 CTTCCGTGCGACGTTGGA 60.355 61.111 4.64 0.00 40.58 3.53
817 818 0.249120 CACGTGGCAGTGGGAATAGA 59.751 55.000 7.95 0.00 38.40 1.98
866 867 0.319900 GAACAGAGCTGCGAAGGTCA 60.320 55.000 24.17 0.00 38.64 4.02
867 868 1.016653 GGAACAGAGCTGCGAAGGTC 61.017 60.000 15.10 15.10 36.64 3.85
1029 1032 0.793617 AGGAGGAAGAGGACTTGGGA 59.206 55.000 0.00 0.00 36.39 4.37
1221 1572 4.292977 CTTCCGTAAGCCATTCCATTTC 57.707 45.455 0.00 0.00 0.00 2.17
1259 1610 2.655364 CTCCGCGCATCCTACACG 60.655 66.667 8.75 0.00 0.00 4.49
1322 1673 4.758251 CCGCTGGTGGCATCGTCA 62.758 66.667 0.00 0.00 41.91 4.35
1388 1739 0.249868 TGACGGCGATGGATTCATCC 60.250 55.000 16.62 0.00 45.20 3.51
1488 1840 5.270083 TCACGTGCAAAATAACAAGAACTG 58.730 37.500 11.67 0.00 0.00 3.16
1494 1846 5.321983 GCAATTCACGTGCAAAATAACAA 57.678 34.783 11.67 0.00 41.80 2.83
1555 1907 0.467290 GAACCAAGCCCAGTCCACAA 60.467 55.000 0.00 0.00 0.00 3.33
1560 1912 0.110486 TTCCTGAACCAAGCCCAGTC 59.890 55.000 0.00 0.00 0.00 3.51
1747 2245 2.203788 TCCTGCTCCCTGGAACGT 60.204 61.111 0.00 0.00 36.30 3.99
1791 2289 4.119862 CTCTTTTGACACTTCGACCTCAA 58.880 43.478 0.00 0.00 0.00 3.02
2086 2584 5.242393 ACTGACCAATTCCTCTGAAACATTG 59.758 40.000 0.00 0.00 33.32 2.82
2295 2793 1.809567 GCCCTTTGTGACAGCCAAGG 61.810 60.000 7.42 7.42 0.00 3.61
2714 3212 2.178912 TTAACTTTCCGGTGCTCCAG 57.821 50.000 0.00 0.00 0.00 3.86
2774 3272 4.829064 TTTGTGTATCAAGTTCACCAGC 57.171 40.909 0.00 0.00 37.35 4.85
2789 3287 4.085357 TGACTAGCCAAGTGATTTGTGT 57.915 40.909 0.00 0.00 39.07 3.72
2819 3317 1.188863 GCATCATCTTTGGCCTGGTT 58.811 50.000 3.32 0.00 0.00 3.67
2867 3365 3.054875 TGTGCAGACAGCCTATGAAGAAT 60.055 43.478 0.00 0.00 44.83 2.40
2868 3366 2.302733 TGTGCAGACAGCCTATGAAGAA 59.697 45.455 0.00 0.00 44.83 2.52
3121 3619 0.673437 CGCACTGGTCCACCAATTTT 59.327 50.000 0.00 0.00 46.97 1.82
3141 3639 1.022982 TCTTCGCTGGATGCTGCTTG 61.023 55.000 13.87 4.45 40.11 4.01
3867 4460 4.986054 TTACCCTTTTCCTCACTAAGCA 57.014 40.909 0.00 0.00 0.00 3.91
3868 4461 5.314529 ACTTTACCCTTTTCCTCACTAAGC 58.685 41.667 0.00 0.00 0.00 3.09
4035 4628 6.417258 TCATTCTCCACATGATTCTTAGCAA 58.583 36.000 0.00 0.00 0.00 3.91
4179 4772 7.118101 GCAATTGCATTTGGTATTTCTCTTCAA 59.882 33.333 25.36 0.00 41.59 2.69
4522 5118 5.105635 TCCAAATTCTTCAGCCATCAATGAC 60.106 40.000 0.00 0.00 0.00 3.06
4690 5286 5.352284 TGCAACACACCGAACAAATAAATT 58.648 33.333 0.00 0.00 0.00 1.82
4703 5299 9.716507 CAAATAGTAAATATACTGCAACACACC 57.283 33.333 0.00 0.00 42.37 4.16
4830 5426 1.502163 AAGCTGCGCTATGAATCGGC 61.502 55.000 9.73 0.00 38.25 5.54
4994 5592 4.910458 AGTGGGCAATGTCTAACTTACT 57.090 40.909 0.00 0.00 0.00 2.24
5073 5686 4.831107 AGCAAAAACTTGAAAAAGAGGCA 58.169 34.783 0.00 0.00 0.00 4.75
5127 5754 8.867112 ATGCTTAAATATGCTGAAGTCAAATG 57.133 30.769 0.84 0.00 0.00 2.32
5354 5981 5.708736 TTGTCACCCATGTAACCTGATAT 57.291 39.130 0.00 0.00 0.00 1.63
5369 5996 7.041372 ACGGAGCAACAATATAATATTGTCACC 60.041 37.037 0.00 0.00 40.94 4.02
5754 6381 9.670442 TCACTAACCCCTTAATATCAGATAACT 57.330 33.333 0.00 0.00 0.00 2.24
5789 6416 9.784531 TTTCAGTCTCATTTTCAACTCTTCTAT 57.215 29.630 0.00 0.00 0.00 1.98
5794 6421 7.630242 TTGTTTCAGTCTCATTTTCAACTCT 57.370 32.000 0.00 0.00 0.00 3.24
5858 6485 8.070171 CAGTTTGTGTACTCTTTCCAAATACAG 58.930 37.037 0.00 0.00 0.00 2.74
5876 6503 4.020751 TCTGAGATCTTCCTCCAGTTTGTG 60.021 45.833 0.00 0.00 32.32 3.33
5877 6504 4.163427 TCTGAGATCTTCCTCCAGTTTGT 58.837 43.478 0.00 0.00 32.32 2.83
5904 6531 4.412207 CATTCCATTGCGCTCATCATATG 58.588 43.478 9.73 0.00 0.00 1.78
6336 6963 3.192212 CCTCCTTGAGCTGTTCAATTTCC 59.808 47.826 7.40 0.00 44.48 3.13
6589 7216 0.968405 GCCTGCAACTTTGATCCCAA 59.032 50.000 0.00 0.00 0.00 4.12
6773 7400 6.694447 ACAAAGCAATGAAGCATAAGACAAT 58.306 32.000 0.00 0.00 36.85 2.71
7120 7876 2.280628 GAACCCTTCCGCATTACTCTG 58.719 52.381 0.00 0.00 0.00 3.35
7183 7939 3.549423 CCGAATCATGTGCAGCAATTAGG 60.549 47.826 0.00 0.00 0.00 2.69
7362 8120 2.928334 AGCTTACCAGATGCCATCAAG 58.072 47.619 7.56 2.99 0.00 3.02
7421 8179 2.490168 GCCTTTTAGTTCCCCCAGTGAA 60.490 50.000 0.00 0.00 0.00 3.18
7452 8210 7.704899 GGAAAAGAGAAAAGTTCAAATTCGGAA 59.295 33.333 0.00 0.00 0.00 4.30
7475 8233 9.729281 ACTATAAATTAAAGGAAACAGACGGAA 57.271 29.630 0.00 0.00 0.00 4.30
7531 8289 1.893801 ACGTCCAAGTAGAACTCCAGG 59.106 52.381 0.00 0.00 0.00 4.45
7766 8524 3.762288 TCGACTAAGAACCAGCATGTAGT 59.238 43.478 0.00 0.00 0.00 2.73
7780 8538 5.446143 AGATACAAGGCAGATCGACTAAG 57.554 43.478 0.00 0.00 26.26 2.18
7841 8599 4.148825 CCTAGCCTTGCTCGCGGT 62.149 66.667 6.13 0.00 40.44 5.68
8145 8908 3.871594 ACACAGAAAACTCTCGTCCAAAG 59.128 43.478 0.00 0.00 0.00 2.77
8195 8958 3.000041 CAACACTTCACGCTATAGCCAA 59.000 45.455 19.00 8.44 37.91 4.52
8217 8980 7.233348 AGTCTTGGAAGCCTTTCATTTTATCAA 59.767 33.333 0.00 0.00 34.90 2.57
8222 8985 4.022849 CGAGTCTTGGAAGCCTTTCATTTT 60.023 41.667 0.00 0.00 34.90 1.82
8236 9000 4.932200 ACAAGAAATAAGCTCGAGTCTTGG 59.068 41.667 29.55 18.75 43.93 3.61
8237 9001 6.473397 AACAAGAAATAAGCTCGAGTCTTG 57.527 37.500 26.90 26.90 44.74 3.02
8265 9029 1.059913 AGAACACCCTCCCTGAACAG 58.940 55.000 0.00 0.00 0.00 3.16
8334 9098 8.095169 CCCTCTGTCTCTAAAGCTAGTTTAAAA 58.905 37.037 0.00 0.00 29.93 1.52
8338 9102 5.334421 TCCCTCTGTCTCTAAAGCTAGTTT 58.666 41.667 0.00 0.00 0.00 2.66
8340 9104 4.017867 ACTCCCTCTGTCTCTAAAGCTAGT 60.018 45.833 0.00 0.00 0.00 2.57
8341 9105 4.532834 ACTCCCTCTGTCTCTAAAGCTAG 58.467 47.826 0.00 0.00 0.00 3.42
8342 9106 4.594675 ACTCCCTCTGTCTCTAAAGCTA 57.405 45.455 0.00 0.00 0.00 3.32
8344 9108 5.862678 ATTACTCCCTCTGTCTCTAAAGC 57.137 43.478 0.00 0.00 0.00 3.51
8351 9115 5.279206 CGCATGATAATTACTCCCTCTGTCT 60.279 44.000 0.00 0.00 0.00 3.41
8370 9184 1.400494 GTTAAGCCTTACCACCGCATG 59.600 52.381 0.00 0.00 0.00 4.06
8388 9202 7.404671 ACACCTTCATGTAGTTTGAAAAGTT 57.595 32.000 0.00 0.00 32.98 2.66
8428 9242 4.334759 TCAACAATTTTGTGCCACAAATGG 59.665 37.500 22.55 16.52 46.17 3.16
8447 9261 9.469807 CTGTGATGAGACCTTAACTATATCAAC 57.530 37.037 0.00 0.00 0.00 3.18
8493 9307 6.723977 TGGTGGCATTAAAGTAGGAATTCTTT 59.276 34.615 5.23 0.70 37.58 2.52
8519 9333 7.486870 AGTTCCGTTTTGTTGACAAAGAATAAC 59.513 33.333 9.04 11.65 45.34 1.89
8605 9419 3.902881 ATGAATTGAGGAGCGAGAAGT 57.097 42.857 0.00 0.00 0.00 3.01
8623 9437 4.211164 GTGAATGCATGCCAATGATCAATG 59.789 41.667 16.68 0.45 35.67 2.82
8637 9458 0.036105 TGCAGAGTCGGTGAATGCAT 60.036 50.000 0.00 0.00 41.65 3.96
8643 9464 0.396435 AATGGTTGCAGAGTCGGTGA 59.604 50.000 0.00 0.00 0.00 4.02
8644 9465 0.518636 CAATGGTTGCAGAGTCGGTG 59.481 55.000 0.00 0.00 0.00 4.94
8653 9474 1.007502 GTTGCGCTCAATGGTTGCA 60.008 52.632 9.73 0.00 34.29 4.08
8695 9516 3.097672 CACGTGTGTGTGGTGGTG 58.902 61.111 7.58 0.00 41.34 4.17
8810 9743 5.124776 CGTGGTTTGTAACATGACCCATATT 59.875 40.000 0.00 0.00 0.00 1.28
8894 9830 2.405892 GCGATGCAAACACTTGTCTT 57.594 45.000 0.00 0.00 34.79 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.