Multiple sequence alignment - TraesCS6A01G212700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G212700 chr6A 100.000 9573 0 0 1 9573 386899581 386890009 0.000000e+00 17679.0
1 TraesCS6A01G212700 chr6A 97.980 99 1 1 4514 4611 9535528 9535626 4.600000e-38 171.0
2 TraesCS6A01G212700 chr6D 98.642 3535 47 1 886 4420 270582535 270586068 0.000000e+00 6261.0
3 TraesCS6A01G212700 chr6D 94.795 3343 95 26 5719 9019 270587533 270590838 0.000000e+00 5136.0
4 TraesCS6A01G212700 chr6D 96.624 2962 53 12 5719 8652 270689508 270692450 0.000000e+00 4872.0
5 TraesCS6A01G212700 chr6D 98.294 1114 12 2 4612 5718 270586261 270587374 0.000000e+00 1945.0
6 TraesCS6A01G212700 chr6D 98.294 1114 12 2 4612 5718 270688236 270689349 0.000000e+00 1945.0
7 TraesCS6A01G212700 chr6D 99.690 646 2 0 3775 4420 270687398 270688043 0.000000e+00 1182.0
8 TraesCS6A01G212700 chr6D 80.380 790 81 37 8640 9413 270692470 270693201 5.090000e-147 532.0
9 TraesCS6A01G212700 chr6D 96.241 133 3 2 713 844 270582396 270582527 5.820000e-52 217.0
10 TraesCS6A01G212700 chr6D 97.959 98 2 0 4514 4611 451541733 451541636 4.600000e-38 171.0
11 TraesCS6A01G212700 chr6D 96.939 98 3 0 4514 4611 136701644 136701741 2.140000e-36 165.0
12 TraesCS6A01G212700 chr6B 95.668 1662 38 4 7022 8652 423191252 423189594 0.000000e+00 2639.0
13 TraesCS6A01G212700 chr6B 96.912 1198 34 1 5904 7098 423192451 423191254 0.000000e+00 2004.0
14 TraesCS6A01G212700 chr6B 92.003 1388 92 11 3027 4410 423201651 423200279 0.000000e+00 1930.0
15 TraesCS6A01G212700 chr6B 91.687 1251 64 12 1606 2847 423202870 423201651 0.000000e+00 1698.0
16 TraesCS6A01G212700 chr6B 95.873 945 32 4 8631 9571 423189504 423188563 0.000000e+00 1522.0
17 TraesCS6A01G212700 chr6B 92.458 716 34 11 4612 5312 423194160 423193450 0.000000e+00 1005.0
18 TraesCS6A01G212700 chr6B 95.141 638 24 2 887 1518 423204030 423203394 0.000000e+00 1000.0
19 TraesCS6A01G212700 chr6B 90.909 605 37 8 5314 5907 423193417 423192820 0.000000e+00 797.0
20 TraesCS6A01G212700 chr6B 77.310 617 120 16 19 622 717099371 717098762 7.120000e-91 346.0
21 TraesCS6A01G212700 chr6B 79.318 440 80 8 181 613 673860271 673860706 2.020000e-76 298.0
22 TraesCS6A01G212700 chr6B 90.517 116 6 2 1506 1617 423203007 423202893 2.150000e-31 148.0
23 TraesCS6A01G212700 chr6B 97.701 87 1 1 715 800 423204503 423204417 2.150000e-31 148.0
24 TraesCS6A01G212700 chr2A 95.018 1405 35 10 5904 7305 734976659 734975287 0.000000e+00 2174.0
25 TraesCS6A01G212700 chr2A 98.000 100 2 0 4514 4613 582952726 582952627 3.550000e-39 174.0
26 TraesCS6A01G212700 chr2D 95.961 1139 25 3 3288 4420 630685221 630684098 0.000000e+00 1829.0
27 TraesCS6A01G212700 chr2D 97.751 756 16 1 2547 3301 630686485 630685730 0.000000e+00 1301.0
28 TraesCS6A01G212700 chr2D 98.446 386 6 0 4612 4997 630683905 630683520 0.000000e+00 680.0
29 TraesCS6A01G212700 chr2D 93.750 96 5 1 4430 4524 164992680 164992775 1.000000e-29 143.0
30 TraesCS6A01G212700 chr2D 93.617 94 5 1 4425 4517 14895369 14895276 1.300000e-28 139.0
31 TraesCS6A01G212700 chr2D 82.895 76 8 5 4484 4555 428663688 428663762 8.030000e-06 63.9
32 TraesCS6A01G212700 chr1D 94.013 618 31 3 1 614 474819471 474820086 0.000000e+00 931.0
33 TraesCS6A01G212700 chr1D 93.878 245 15 0 7035 7279 156283767 156284011 4.220000e-98 370.0
34 TraesCS6A01G212700 chr1D 93.061 245 17 0 7035 7279 11357652 11357896 9.140000e-95 359.0
35 TraesCS6A01G212700 chr1D 80.706 425 75 6 195 613 10765349 10764926 3.330000e-84 324.0
36 TraesCS6A01G212700 chr1B 87.662 616 72 1 1 612 192285216 192285831 0.000000e+00 713.0
37 TraesCS6A01G212700 chr1B 78.969 485 92 9 137 614 11868273 11868754 1.200000e-83 322.0
38 TraesCS6A01G212700 chr1B 97.030 101 3 0 4514 4614 683466339 683466239 4.600000e-38 171.0
39 TraesCS6A01G212700 chr3D 91.960 398 32 0 6882 7279 419585217 419584820 8.400000e-155 558.0
40 TraesCS6A01G212700 chr3D 93.878 245 15 0 7035 7279 459884672 459884428 4.220000e-98 370.0
41 TraesCS6A01G212700 chr3D 97.030 101 3 0 4514 4614 418779951 418779851 4.600000e-38 171.0
42 TraesCS6A01G212700 chr3D 92.857 98 6 1 4424 4520 312907498 312907595 3.600000e-29 141.0
43 TraesCS6A01G212700 chr3D 92.000 100 5 3 4426 4522 54370403 54370502 4.660000e-28 137.0
44 TraesCS6A01G212700 chrUn 93.878 245 15 0 7035 7279 425657896 425658140 4.220000e-98 370.0
45 TraesCS6A01G212700 chr3B 77.521 605 119 14 19 613 618670263 618669666 1.980000e-91 348.0
46 TraesCS6A01G212700 chr3B 78.765 405 72 12 221 614 792742838 792742437 9.540000e-65 259.0
47 TraesCS6A01G212700 chr7B 79.089 483 95 5 137 614 242671718 242672199 2.580000e-85 327.0
48 TraesCS6A01G212700 chr7D 98.000 100 2 0 4514 4613 160632722 160632623 3.550000e-39 174.0
49 TraesCS6A01G212700 chr7D 96.078 102 3 1 4514 4615 616902169 616902269 2.140000e-36 165.0
50 TraesCS6A01G212700 chr7D 94.624 93 4 1 4427 4518 141292179 141292087 1.000000e-29 143.0
51 TraesCS6A01G212700 chr7D 90.741 54 4 1 5250 5302 480046111 480046164 4.800000e-08 71.3
52 TraesCS6A01G212700 chr1A 98.000 100 2 0 4514 4613 565327151 565327250 3.550000e-39 174.0
53 TraesCS6A01G212700 chr5B 88.971 136 11 4 6869 7003 509466949 509467081 2.140000e-36 165.0
54 TraesCS6A01G212700 chr5B 95.000 40 2 0 5403 5442 291382063 291382102 8.030000e-06 63.9
55 TraesCS6A01G212700 chr5A 95.556 90 3 1 4430 4518 338413306 338413217 1.000000e-29 143.0
56 TraesCS6A01G212700 chr5A 92.708 96 6 1 4424 4518 487791870 487791965 4.660000e-28 137.0
57 TraesCS6A01G212700 chr5A 91.089 101 7 2 4418 4517 605589074 605589173 1.680000e-27 135.0
58 TraesCS6A01G212700 chr5A 77.439 164 25 6 5195 5348 314672223 314672062 4.760000e-13 87.9
59 TraesCS6A01G212700 chr4A 90.291 103 9 1 4419 4520 680679504 680679402 6.030000e-27 134.0
60 TraesCS6A01G212700 chr4A 82.759 87 7 5 5211 5290 533449010 533449095 4.800000e-08 71.3
61 TraesCS6A01G212700 chr5D 74.144 263 42 15 5212 5453 351788204 351787947 1.710000e-12 86.1
62 TraesCS6A01G212700 chr5D 82.292 96 9 4 5203 5295 137055830 137055920 1.030000e-09 76.8
63 TraesCS6A01G212700 chr5D 87.500 64 6 2 5244 5306 525241594 525241656 1.330000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G212700 chr6A 386890009 386899581 9572 True 17679.00 17679 100.0000 1 9573 1 chr6A.!!$R1 9572
1 TraesCS6A01G212700 chr6D 270582396 270590838 8442 False 3389.75 6261 96.9930 713 9019 4 chr6D.!!$F2 8306
2 TraesCS6A01G212700 chr6D 270687398 270693201 5803 False 2132.75 4872 93.7470 3775 9413 4 chr6D.!!$F3 5638
3 TraesCS6A01G212700 chr6B 423188563 423194160 5597 True 1593.40 2639 94.3640 4612 9571 5 chr6B.!!$R2 4959
4 TraesCS6A01G212700 chr6B 423200279 423204503 4224 True 984.80 1930 93.4098 715 4410 5 chr6B.!!$R3 3695
5 TraesCS6A01G212700 chr6B 717098762 717099371 609 True 346.00 346 77.3100 19 622 1 chr6B.!!$R1 603
6 TraesCS6A01G212700 chr2A 734975287 734976659 1372 True 2174.00 2174 95.0180 5904 7305 1 chr2A.!!$R2 1401
7 TraesCS6A01G212700 chr2D 630683520 630686485 2965 True 1270.00 1829 97.3860 2547 4997 3 chr2D.!!$R2 2450
8 TraesCS6A01G212700 chr1D 474819471 474820086 615 False 931.00 931 94.0130 1 614 1 chr1D.!!$F3 613
9 TraesCS6A01G212700 chr1B 192285216 192285831 615 False 713.00 713 87.6620 1 612 1 chr1B.!!$F2 611
10 TraesCS6A01G212700 chr3B 618669666 618670263 597 True 348.00 348 77.5210 19 613 1 chr3B.!!$R1 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
702 708 0.107508 CAATCACTCACCTGGGCGAT 60.108 55.000 0.00 0.00 0.00 4.58 F
711 717 0.323725 ACCTGGGCGATGCAAATCTT 60.324 50.000 0.00 0.00 0.00 2.40 F
844 850 0.647410 CAACCTCTATTCACGCTGCG 59.353 55.000 21.91 21.91 0.00 5.18 F
874 880 0.727398 GGCGAGTAATTCACACTGCC 59.273 55.000 0.00 5.25 34.98 4.85 F
1920 2669 1.239347 CAGAGCAGGGATGATGCATG 58.761 55.000 2.46 0.00 46.31 4.06 F
3456 4736 1.002087 AGTAGAAACCGAGGCCACTTG 59.998 52.381 5.01 0.00 0.00 3.16 F
3873 5160 1.151413 AGTGGGTTTGGTAGGGAGAGA 59.849 52.381 0.00 0.00 0.00 3.10 F
4588 5878 0.105401 TGGCCCGATACTGATACCCA 60.105 55.000 0.00 0.00 0.00 4.51 F
4589 5879 1.276622 GGCCCGATACTGATACCCAT 58.723 55.000 0.00 0.00 0.00 4.00 F
6129 8012 0.807496 AGAAGCTCAAATGCGAAGGC 59.193 50.000 0.00 0.00 38.13 4.35 F
6743 8626 3.028130 TGGTGACAAAAAGGGAAAGACC 58.972 45.455 0.00 0.00 37.44 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2553 3302 1.202592 GCCTAAGTAGAGGGCTGCTTC 60.203 57.143 0.00 0.00 42.41 3.86 R
2692 3450 7.566760 TTCAAGTGTTGAACTGTCATACAAT 57.433 32.000 0.00 0.00 44.21 2.71 R
2910 3668 2.294233 TGTTTCTTCAGCAACCATCAGC 59.706 45.455 0.00 0.00 0.00 4.26 R
3013 3771 5.877012 ACTTTATGTCCATCTGTAGTTGCAG 59.123 40.000 0.00 0.00 37.81 4.41 R
3653 4934 1.134367 TCTATCTGGGTTGAGAACGCG 59.866 52.381 3.53 3.53 46.27 6.01 R
4502 5792 0.108472 CGTTTTACTCCCTCCGTCCC 60.108 60.000 0.00 0.00 0.00 4.46 R
6001 7884 4.533919 TTGTCAATAAACATTGCCCTGG 57.466 40.909 0.00 0.00 0.00 4.45 R
6129 8012 5.713025 CAATGTAACCAGGAAGTTTGATGG 58.287 41.667 0.00 0.00 38.83 3.51 R
6743 8626 9.827411 CTGTTATCTGAAATATCATGCTTGATG 57.173 33.333 21.89 7.07 42.60 3.07 R
7192 9163 2.578163 CTTCCTCGCCTTCCATCGCA 62.578 60.000 0.00 0.00 0.00 5.10 R
8851 10969 1.228003 AACCGTGGCGTCCAAATCA 60.228 52.632 0.00 0.00 34.18 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 8.912988 GGTTTCATCAATTCATACCTAATGGAA 58.087 33.333 0.00 0.00 36.15 3.53
103 104 4.221262 TCCTAGTACTACGCCACAAAACAT 59.779 41.667 0.00 0.00 0.00 2.71
124 125 1.125093 TCACGTTGGATCCCACCAGT 61.125 55.000 9.90 0.00 41.19 4.00
142 143 2.167693 CAGTCCCAGGTTATGCGAAGTA 59.832 50.000 0.00 0.00 0.00 2.24
251 252 6.325919 TCGGCACTTGTTTTCAGATTTATT 57.674 33.333 0.00 0.00 0.00 1.40
281 282 1.685803 CCTACATTGGAGGCATTGGCA 60.686 52.381 13.20 0.00 43.71 4.92
329 330 6.503560 AAGGATTTATACACCCAACGGATA 57.496 37.500 0.00 0.00 0.00 2.59
378 379 1.271379 TGGACGACATACAGAAGCGTT 59.729 47.619 0.00 0.00 35.09 4.84
409 410 2.802816 GCTATGGTGCGATAGTTCAAGG 59.197 50.000 0.00 0.00 39.35 3.61
410 411 3.492656 GCTATGGTGCGATAGTTCAAGGA 60.493 47.826 0.00 0.00 39.35 3.36
430 431 7.890127 TCAAGGAATCATAGACATTTCTGGTTT 59.110 33.333 0.00 0.00 32.75 3.27
513 519 1.691976 CGATGCTATTACCCTGGGTGA 59.308 52.381 28.64 21.24 36.19 4.02
540 546 3.356290 GCCATGTTTGGTTAGGTCATCT 58.644 45.455 0.00 0.00 45.57 2.90
558 564 2.643551 TCTGGGAAATCTTTCATCCGC 58.356 47.619 5.14 0.00 38.92 5.54
560 566 1.284785 TGGGAAATCTTTCATCCGCCT 59.715 47.619 5.14 0.00 38.92 5.52
563 569 2.875317 GGAAATCTTTCATCCGCCTCTC 59.125 50.000 5.14 0.00 38.92 3.20
592 598 9.691362 AACATTGTGACGAATTAATAAAGCTTT 57.309 25.926 17.30 17.30 0.00 3.51
632 638 6.775594 AAAAAGTTAACTGCTGGACTTTCT 57.224 33.333 9.34 6.20 40.38 2.52
633 639 6.775594 AAAAGTTAACTGCTGGACTTTCTT 57.224 33.333 9.34 0.00 40.38 2.52
634 640 7.875327 AAAAGTTAACTGCTGGACTTTCTTA 57.125 32.000 9.34 0.00 40.38 2.10
635 641 7.875327 AAAGTTAACTGCTGGACTTTCTTAA 57.125 32.000 9.34 0.00 37.70 1.85
636 642 7.875327 AAGTTAACTGCTGGACTTTCTTAAA 57.125 32.000 9.34 0.00 0.00 1.52
637 643 7.875327 AGTTAACTGCTGGACTTTCTTAAAA 57.125 32.000 7.48 0.00 0.00 1.52
638 644 7.931275 AGTTAACTGCTGGACTTTCTTAAAAG 58.069 34.615 7.48 0.00 46.11 2.27
639 645 7.773690 AGTTAACTGCTGGACTTTCTTAAAAGA 59.226 33.333 7.48 0.00 43.90 2.52
640 646 8.403236 GTTAACTGCTGGACTTTCTTAAAAGAA 58.597 33.333 4.99 1.00 43.90 2.52
641 647 6.625873 ACTGCTGGACTTTCTTAAAAGAAG 57.374 37.500 5.38 3.67 45.01 2.85
642 648 6.357367 ACTGCTGGACTTTCTTAAAAGAAGA 58.643 36.000 5.38 0.00 45.01 2.87
643 649 6.828785 ACTGCTGGACTTTCTTAAAAGAAGAA 59.171 34.615 5.38 0.00 45.01 2.52
644 650 7.012799 ACTGCTGGACTTTCTTAAAAGAAGAAG 59.987 37.037 5.38 4.42 45.01 2.85
645 651 7.054124 TGCTGGACTTTCTTAAAAGAAGAAGA 58.946 34.615 9.91 0.00 45.01 2.87
646 652 7.556275 TGCTGGACTTTCTTAAAAGAAGAAGAA 59.444 33.333 9.91 0.00 45.01 2.52
647 653 8.406297 GCTGGACTTTCTTAAAAGAAGAAGAAA 58.594 33.333 9.91 8.92 45.08 2.52
660 666 9.574458 AAAAGAAGAAGAAAAGAAGTTAACTGC 57.426 29.630 9.34 7.28 0.00 4.40
661 667 8.512966 AAGAAGAAGAAAAGAAGTTAACTGCT 57.487 30.769 10.61 10.61 31.69 4.24
662 668 7.924940 AGAAGAAGAAAAGAAGTTAACTGCTG 58.075 34.615 17.21 0.00 30.56 4.41
663 669 6.625873 AGAAGAAAAGAAGTTAACTGCTGG 57.374 37.500 17.21 0.00 30.56 4.85
664 670 6.357367 AGAAGAAAAGAAGTTAACTGCTGGA 58.643 36.000 17.21 0.00 30.56 3.86
665 671 6.261158 AGAAGAAAAGAAGTTAACTGCTGGAC 59.739 38.462 17.21 10.67 30.56 4.02
666 672 5.685728 AGAAAAGAAGTTAACTGCTGGACT 58.314 37.500 17.21 12.57 30.56 3.85
667 673 5.529060 AGAAAAGAAGTTAACTGCTGGACTG 59.471 40.000 17.21 0.00 30.56 3.51
668 674 4.689612 AAGAAGTTAACTGCTGGACTGA 57.310 40.909 17.21 0.00 30.56 3.41
669 675 4.689612 AGAAGTTAACTGCTGGACTGAA 57.310 40.909 15.77 0.00 28.42 3.02
670 676 4.381411 AGAAGTTAACTGCTGGACTGAAC 58.619 43.478 15.77 0.00 28.42 3.18
671 677 3.127425 AGTTAACTGCTGGACTGAACC 57.873 47.619 7.48 0.00 0.00 3.62
672 678 2.152016 GTTAACTGCTGGACTGAACCC 58.848 52.381 0.00 0.00 0.00 4.11
673 679 0.320374 TAACTGCTGGACTGAACCCG 59.680 55.000 0.00 0.00 0.00 5.28
674 680 1.407656 AACTGCTGGACTGAACCCGA 61.408 55.000 0.00 0.00 0.00 5.14
675 681 1.371183 CTGCTGGACTGAACCCGAA 59.629 57.895 0.00 0.00 0.00 4.30
676 682 0.671781 CTGCTGGACTGAACCCGAAG 60.672 60.000 0.00 0.00 0.00 3.79
690 696 1.722011 CCGAAGGCGTTACAATCACT 58.278 50.000 0.00 0.00 46.14 3.41
691 697 1.659098 CCGAAGGCGTTACAATCACTC 59.341 52.381 0.00 0.00 46.14 3.51
692 698 2.333926 CGAAGGCGTTACAATCACTCA 58.666 47.619 0.00 0.00 0.00 3.41
693 699 2.092211 CGAAGGCGTTACAATCACTCAC 59.908 50.000 0.00 0.00 0.00 3.51
694 700 2.094762 AGGCGTTACAATCACTCACC 57.905 50.000 0.00 0.00 0.00 4.02
695 701 1.623811 AGGCGTTACAATCACTCACCT 59.376 47.619 0.00 0.00 0.00 4.00
696 702 1.732259 GGCGTTACAATCACTCACCTG 59.268 52.381 0.00 0.00 0.00 4.00
697 703 1.732259 GCGTTACAATCACTCACCTGG 59.268 52.381 0.00 0.00 0.00 4.45
698 704 2.346803 CGTTACAATCACTCACCTGGG 58.653 52.381 0.00 0.00 0.00 4.45
699 705 2.084546 GTTACAATCACTCACCTGGGC 58.915 52.381 0.00 0.00 0.00 5.36
700 706 0.249120 TACAATCACTCACCTGGGCG 59.751 55.000 0.00 0.00 0.00 6.13
701 707 1.296392 CAATCACTCACCTGGGCGA 59.704 57.895 0.00 0.00 0.00 5.54
702 708 0.107508 CAATCACTCACCTGGGCGAT 60.108 55.000 0.00 0.00 0.00 4.58
703 709 0.107508 AATCACTCACCTGGGCGATG 60.108 55.000 0.00 0.00 0.00 3.84
704 710 2.599645 ATCACTCACCTGGGCGATGC 62.600 60.000 0.00 0.00 0.00 3.91
705 711 3.321648 ACTCACCTGGGCGATGCA 61.322 61.111 0.00 0.00 0.00 3.96
706 712 2.046023 CTCACCTGGGCGATGCAA 60.046 61.111 0.00 0.00 0.00 4.08
707 713 1.675310 CTCACCTGGGCGATGCAAA 60.675 57.895 0.00 0.00 0.00 3.68
708 714 1.001020 TCACCTGGGCGATGCAAAT 60.001 52.632 0.00 0.00 0.00 2.32
709 715 1.031571 TCACCTGGGCGATGCAAATC 61.032 55.000 0.00 0.00 0.00 2.17
710 716 1.033746 CACCTGGGCGATGCAAATCT 61.034 55.000 0.00 0.00 0.00 2.40
711 717 0.323725 ACCTGGGCGATGCAAATCTT 60.324 50.000 0.00 0.00 0.00 2.40
844 850 0.647410 CAACCTCTATTCACGCTGCG 59.353 55.000 21.91 21.91 0.00 5.18
846 852 0.747255 ACCTCTATTCACGCTGCGAT 59.253 50.000 30.47 14.40 0.00 4.58
847 853 1.137086 ACCTCTATTCACGCTGCGATT 59.863 47.619 30.47 11.99 0.00 3.34
849 855 2.609459 CCTCTATTCACGCTGCGATTTT 59.391 45.455 30.47 12.70 0.00 1.82
872 878 4.481930 TTTTGGCGAGTAATTCACACTG 57.518 40.909 0.00 0.00 0.00 3.66
873 879 1.438651 TGGCGAGTAATTCACACTGC 58.561 50.000 0.00 0.00 0.00 4.40
874 880 0.727398 GGCGAGTAATTCACACTGCC 59.273 55.000 0.00 5.25 34.98 4.85
875 881 1.438651 GCGAGTAATTCACACTGCCA 58.561 50.000 0.00 0.00 0.00 4.92
877 883 2.030946 GCGAGTAATTCACACTGCCATC 59.969 50.000 0.00 0.00 0.00 3.51
878 884 2.282555 CGAGTAATTCACACTGCCATCG 59.717 50.000 0.00 0.00 0.00 3.84
879 885 2.609459 GAGTAATTCACACTGCCATCGG 59.391 50.000 0.00 0.00 0.00 4.18
906 1213 2.680370 GGGTTTCCGGCTCCATCCT 61.680 63.158 0.00 0.00 0.00 3.24
964 1271 4.731853 TCTCCACGCCCCATCCCA 62.732 66.667 0.00 0.00 0.00 4.37
998 1305 1.679153 GTGTAGCTCCTCTACTGCTCC 59.321 57.143 0.00 0.00 46.15 4.70
1344 1657 2.089980 CCATCAAAAGCCAGGTGAGAG 58.910 52.381 0.00 0.00 0.00 3.20
1388 1701 6.634436 GCATTCGATCATAACAATGAGGTTTC 59.366 38.462 0.00 0.00 33.59 2.78
1679 2428 2.866762 CTGAGGTCCTAGTTTTATGCGC 59.133 50.000 0.00 0.00 0.00 6.09
1705 2454 9.559958 CTATATGTTTAGCAACCTTGTTCTTTG 57.440 33.333 0.00 0.00 31.02 2.77
1873 2622 9.499585 CAAGTTGCACATTTGAGAGATATAAAG 57.500 33.333 0.00 0.00 0.00 1.85
1920 2669 1.239347 CAGAGCAGGGATGATGCATG 58.761 55.000 2.46 0.00 46.31 4.06
1992 2741 2.435059 GAGTCTTGGAGGCGTGCC 60.435 66.667 1.67 1.67 0.00 5.01
2272 3021 3.065925 GCTCCCATGAACAATTAGAGTGC 59.934 47.826 0.00 0.00 0.00 4.40
2324 3073 3.433306 TGCACTTTGCTAATACCAGGT 57.567 42.857 0.00 0.00 45.31 4.00
2553 3302 8.755018 GTTTGAACATTGAAAGGTGTTATTCTG 58.245 33.333 0.00 0.00 38.57 3.02
2910 3668 5.353956 TGGACACATTTTCTGATAACCATCG 59.646 40.000 0.00 0.00 33.51 3.84
3013 3771 4.312443 TCTACTTGTCATTTCGGAACCAC 58.688 43.478 0.00 0.00 0.00 4.16
3324 4604 1.805428 AAAGGGTGGTCGCATTGTGC 61.805 55.000 0.00 0.00 40.69 4.57
3345 4625 2.154567 ACATCTGGCATGGAAGCAAT 57.845 45.000 0.00 0.00 35.83 3.56
3455 4735 1.349067 AGTAGAAACCGAGGCCACTT 58.651 50.000 5.01 0.00 0.00 3.16
3456 4736 1.002087 AGTAGAAACCGAGGCCACTTG 59.998 52.381 5.01 0.00 0.00 3.16
3873 5160 1.151413 AGTGGGTTTGGTAGGGAGAGA 59.849 52.381 0.00 0.00 0.00 3.10
4272 5562 5.350640 GTGCTGTAGTTATGTTTGGTAGGAC 59.649 44.000 0.00 0.00 0.00 3.85
4420 5710 6.183361 TGGTATGGATATGATAACCAGCACAA 60.183 38.462 7.53 0.00 37.12 3.33
4421 5711 6.714810 GGTATGGATATGATAACCAGCACAAA 59.285 38.462 7.53 0.00 37.12 2.83
4446 5736 6.511017 AAATAAATAGTACCCCCTCTGTCC 57.489 41.667 0.00 0.00 0.00 4.02
4447 5737 2.491312 AATAGTACCCCCTCTGTCCC 57.509 55.000 0.00 0.00 0.00 4.46
4448 5738 1.326055 ATAGTACCCCCTCTGTCCCA 58.674 55.000 0.00 0.00 0.00 4.37
4449 5739 1.326055 TAGTACCCCCTCTGTCCCAT 58.674 55.000 0.00 0.00 0.00 4.00
4450 5740 1.326055 AGTACCCCCTCTGTCCCATA 58.674 55.000 0.00 0.00 0.00 2.74
4452 5742 2.252945 AGTACCCCCTCTGTCCCATAAT 59.747 50.000 0.00 0.00 0.00 1.28
4453 5743 3.473621 AGTACCCCCTCTGTCCCATAATA 59.526 47.826 0.00 0.00 0.00 0.98
4454 5744 3.674358 ACCCCCTCTGTCCCATAATAT 57.326 47.619 0.00 0.00 0.00 1.28
4456 5746 5.114743 ACCCCCTCTGTCCCATAATATAA 57.885 43.478 0.00 0.00 0.00 0.98
4457 5747 5.101529 ACCCCCTCTGTCCCATAATATAAG 58.898 45.833 0.00 0.00 0.00 1.73
4458 5748 5.162648 ACCCCCTCTGTCCCATAATATAAGA 60.163 44.000 0.00 0.00 0.00 2.10
4461 5751 5.394663 CCCTCTGTCCCATAATATAAGAGCG 60.395 48.000 0.00 0.00 0.00 5.03
4462 5752 5.186021 CCTCTGTCCCATAATATAAGAGCGT 59.814 44.000 0.00 0.00 0.00 5.07
4465 5755 7.506114 TCTGTCCCATAATATAAGAGCGTTTT 58.494 34.615 0.00 0.00 0.00 2.43
4466 5756 7.441157 TCTGTCCCATAATATAAGAGCGTTTTG 59.559 37.037 0.00 0.00 0.00 2.44
4467 5757 7.276658 TGTCCCATAATATAAGAGCGTTTTGA 58.723 34.615 0.00 0.00 0.00 2.69
4468 5758 7.225931 TGTCCCATAATATAAGAGCGTTTTGAC 59.774 37.037 0.00 0.00 0.00 3.18
4469 5759 7.225931 GTCCCATAATATAAGAGCGTTTTGACA 59.774 37.037 0.00 0.00 0.00 3.58
4470 5760 7.225931 TCCCATAATATAAGAGCGTTTTGACAC 59.774 37.037 0.00 0.00 0.00 3.67
4472 5762 9.256477 CCATAATATAAGAGCGTTTTGACACTA 57.744 33.333 0.00 0.00 0.00 2.74
4474 5764 9.811995 ATAATATAAGAGCGTTTTGACACTACA 57.188 29.630 0.00 0.00 0.00 2.74
4475 5765 5.840940 ATAAGAGCGTTTTGACACTACAC 57.159 39.130 0.00 0.00 0.00 2.90
4476 5766 3.454371 AGAGCGTTTTGACACTACACT 57.546 42.857 0.00 0.00 0.00 3.55
4477 5767 4.579454 AGAGCGTTTTGACACTACACTA 57.421 40.909 0.00 0.00 0.00 2.74
4478 5768 4.547532 AGAGCGTTTTGACACTACACTAG 58.452 43.478 0.00 0.00 0.00 2.57
4479 5769 4.037684 AGAGCGTTTTGACACTACACTAGT 59.962 41.667 0.00 0.00 40.28 2.57
4480 5770 5.240183 AGAGCGTTTTGACACTACACTAGTA 59.760 40.000 0.00 0.00 37.23 1.82
4482 5772 7.120285 AGAGCGTTTTGACACTACACTAGTATA 59.880 37.037 0.00 0.00 37.23 1.47
4483 5773 7.596494 AGCGTTTTGACACTACACTAGTATAA 58.404 34.615 0.00 0.00 37.23 0.98
4484 5774 8.084073 AGCGTTTTGACACTACACTAGTATAAA 58.916 33.333 0.00 0.00 37.23 1.40
4485 5775 8.702438 GCGTTTTGACACTACACTAGTATAAAA 58.298 33.333 0.00 0.00 37.23 1.52
4507 5797 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
4508 5798 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
4509 5799 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
4510 5800 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
4511 5801 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
4513 5803 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
4514 5804 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
4515 5805 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
4517 5807 2.852714 TTATGGGACGGAGGGAGTAA 57.147 50.000 0.00 0.00 0.00 2.24
4518 5808 2.852714 TATGGGACGGAGGGAGTAAA 57.147 50.000 0.00 0.00 0.00 2.01
4519 5809 1.961133 ATGGGACGGAGGGAGTAAAA 58.039 50.000 0.00 0.00 0.00 1.52
4520 5810 0.978907 TGGGACGGAGGGAGTAAAAC 59.021 55.000 0.00 0.00 0.00 2.43
4521 5811 0.108472 GGGACGGAGGGAGTAAAACG 60.108 60.000 0.00 0.00 0.00 3.60
4522 5812 0.605083 GGACGGAGGGAGTAAAACGT 59.395 55.000 0.00 0.00 37.26 3.99
4523 5813 1.818674 GGACGGAGGGAGTAAAACGTA 59.181 52.381 0.00 0.00 34.43 3.57
4524 5814 2.428530 GGACGGAGGGAGTAAAACGTAT 59.571 50.000 0.00 0.00 34.43 3.06
4525 5815 3.489908 GGACGGAGGGAGTAAAACGTATC 60.490 52.174 0.00 0.00 34.43 2.24
4526 5816 2.428530 ACGGAGGGAGTAAAACGTATCC 59.571 50.000 0.00 0.00 32.30 2.59
4527 5817 2.542411 CGGAGGGAGTAAAACGTATCCG 60.542 54.545 0.00 0.00 42.00 4.18
4541 5831 4.609691 CGTATCCGTATTGGCACTTTTT 57.390 40.909 0.00 0.00 37.80 1.94
4542 5832 4.584394 CGTATCCGTATTGGCACTTTTTC 58.416 43.478 0.00 0.00 37.80 2.29
4543 5833 4.093703 CGTATCCGTATTGGCACTTTTTCA 59.906 41.667 0.00 0.00 37.80 2.69
4545 5835 4.920640 TCCGTATTGGCACTTTTTCAAA 57.079 36.364 0.00 0.00 37.80 2.69
4546 5836 5.263968 TCCGTATTGGCACTTTTTCAAAA 57.736 34.783 0.00 0.00 37.80 2.44
4548 5838 5.694006 TCCGTATTGGCACTTTTTCAAAATG 59.306 36.000 0.00 0.00 37.80 2.32
4549 5839 5.694006 CCGTATTGGCACTTTTTCAAAATGA 59.306 36.000 2.88 0.00 0.00 2.57
4553 5843 7.804843 ATTGGCACTTTTTCAAAATGATGAA 57.195 28.000 2.88 0.00 37.53 2.57
4554 5844 7.804843 TTGGCACTTTTTCAAAATGATGAAT 57.195 28.000 2.88 0.00 38.98 2.57
4555 5845 7.804843 TGGCACTTTTTCAAAATGATGAATT 57.195 28.000 2.88 0.00 38.98 2.17
4556 5846 8.223177 TGGCACTTTTTCAAAATGATGAATTT 57.777 26.923 2.88 0.00 40.32 1.82
4557 5847 9.334947 TGGCACTTTTTCAAAATGATGAATTTA 57.665 25.926 2.88 0.00 37.51 1.40
4558 5848 9.597999 GGCACTTTTTCAAAATGATGAATTTAC 57.402 29.630 2.88 0.00 37.51 2.01
4565 5855 9.497030 TTTCAAAATGATGAATTTACGTATCCG 57.503 29.630 0.00 0.00 37.51 4.18
4566 5856 8.670135 TTCAAAATGATGAATTTACGTATCCGT 58.330 29.630 0.00 0.00 41.31 4.69
4576 5866 1.661480 CGTATCCGTATTGGCCCGA 59.339 57.895 0.00 0.00 37.80 5.14
4577 5867 0.245539 CGTATCCGTATTGGCCCGAT 59.754 55.000 0.00 0.00 37.80 4.18
4578 5868 1.473677 CGTATCCGTATTGGCCCGATA 59.526 52.381 0.00 0.00 37.80 2.92
4579 5869 2.733227 CGTATCCGTATTGGCCCGATAC 60.733 54.545 10.69 10.69 37.80 2.24
4581 5871 0.677288 TCCGTATTGGCCCGATACTG 59.323 55.000 17.26 11.86 37.80 2.74
4583 5873 1.275291 CCGTATTGGCCCGATACTGAT 59.725 52.381 17.26 0.00 30.70 2.90
4585 5875 3.508762 CGTATTGGCCCGATACTGATAC 58.491 50.000 17.26 0.00 30.70 2.24
4586 5876 3.675228 CGTATTGGCCCGATACTGATACC 60.675 52.174 17.26 0.00 30.70 2.73
4587 5877 1.053424 TTGGCCCGATACTGATACCC 58.947 55.000 0.00 0.00 0.00 3.69
4588 5878 0.105401 TGGCCCGATACTGATACCCA 60.105 55.000 0.00 0.00 0.00 4.51
4589 5879 1.276622 GGCCCGATACTGATACCCAT 58.723 55.000 0.00 0.00 0.00 4.00
4590 5880 2.225420 TGGCCCGATACTGATACCCATA 60.225 50.000 0.00 0.00 0.00 2.74
4591 5881 3.039011 GGCCCGATACTGATACCCATAT 58.961 50.000 0.00 0.00 0.00 1.78
4592 5882 3.069729 GGCCCGATACTGATACCCATATC 59.930 52.174 0.00 0.00 38.18 1.63
4593 5883 3.069729 GCCCGATACTGATACCCATATCC 59.930 52.174 0.00 0.00 37.04 2.59
4594 5884 3.318275 CCCGATACTGATACCCATATCCG 59.682 52.174 0.00 0.00 37.04 4.18
4595 5885 3.952323 CCGATACTGATACCCATATCCGT 59.048 47.826 0.00 0.00 38.41 4.69
4599 5889 6.879276 ATACTGATACCCATATCCGTATCG 57.121 41.667 11.47 9.54 41.04 2.92
4609 5899 4.722008 CCGTATCGGTGCATTCGA 57.278 55.556 15.50 15.50 42.73 3.71
4610 5900 2.506544 CCGTATCGGTGCATTCGAG 58.493 57.895 17.51 7.06 42.73 4.04
5485 6826 6.701400 GTGTGTTCATTAAATCTTTGGCTGTT 59.299 34.615 0.00 0.00 0.00 3.16
5762 7265 5.982890 TTTTCTGGGATTGAAAAGCTAGG 57.017 39.130 0.00 0.00 38.15 3.02
5793 7296 8.947115 GTTAATACAGTCATGTCTAAGGCTTTT 58.053 33.333 4.45 0.00 41.01 2.27
5837 7342 6.480320 GTCAGCATGTTAGGTGATAAGGTAAG 59.520 42.308 0.00 0.00 46.32 2.34
5907 7415 4.858850 ACTATGAAGGACAAATGCATGGA 58.141 39.130 0.00 0.00 0.00 3.41
5909 7417 5.895534 ACTATGAAGGACAAATGCATGGATT 59.104 36.000 6.63 6.63 0.00 3.01
5924 7804 4.796606 CATGGATTGGAGGGAGTATGTTT 58.203 43.478 0.00 0.00 0.00 2.83
6129 8012 0.807496 AGAAGCTCAAATGCGAAGGC 59.193 50.000 0.00 0.00 38.13 4.35
6563 8446 7.042523 GCTGTTGCATTGACATTTTCTAAAGTT 60.043 33.333 0.00 0.00 39.41 2.66
6743 8626 3.028130 TGGTGACAAAAAGGGAAAGACC 58.972 45.455 0.00 0.00 37.44 3.85
7017 8988 8.068892 TGGTGTAAGTTTCCATTTAGTGTTTT 57.931 30.769 0.00 0.00 0.00 2.43
7018 8989 7.976734 TGGTGTAAGTTTCCATTTAGTGTTTTG 59.023 33.333 0.00 0.00 0.00 2.44
7192 9163 5.049680 GGTACATGTTCGTTGTTCTGATGTT 60.050 40.000 2.30 0.00 0.00 2.71
7320 9291 6.621613 TGCTATATTCATCGAGTGTGGATAC 58.378 40.000 0.00 0.00 0.00 2.24
7499 9470 3.640967 CCCTTGGAGAGAGGTATCAGAAG 59.359 52.174 0.00 0.00 32.15 2.85
7811 9791 1.129431 AGCCATTGCCCCAGCTTTTT 61.129 50.000 0.00 0.00 40.80 1.94
7959 9945 2.831685 ATGTGCGAAGGTCTGTGTTA 57.168 45.000 0.00 0.00 0.00 2.41
8162 10148 6.018589 TCGGTCATAAATATCAGCTCTCAG 57.981 41.667 0.00 0.00 0.00 3.35
8191 10177 3.824133 TGTACGCCTTCTATACAGCCTA 58.176 45.455 0.00 0.00 0.00 3.93
8249 10235 6.645415 GGTAGGATGTATGGTTTTATCGTCAG 59.355 42.308 0.00 0.00 0.00 3.51
8361 10363 4.769488 GGATATGCAGTCTCTCTATCCACA 59.231 45.833 13.14 0.00 38.36 4.17
8370 10372 8.198109 GCAGTCTCTCTATCCACATTTTACTAA 58.802 37.037 0.00 0.00 0.00 2.24
8515 10517 2.479901 GGCACTACCTTCTAAGCTCGAC 60.480 54.545 0.00 0.00 34.51 4.20
8599 10601 8.360390 AGGGTATTTTCTTTCTCATTTGTGTTC 58.640 33.333 0.00 0.00 0.00 3.18
8605 10607 8.463930 TTTCTTTCTCATTTGTGTTCCTGTAT 57.536 30.769 0.00 0.00 0.00 2.29
8754 10871 4.070009 CAAGTTAAAAGGACGTTAGGGCT 58.930 43.478 0.00 0.00 0.00 5.19
8860 10978 1.798813 GACGTGACACCTGATTTGGAC 59.201 52.381 0.00 0.00 0.00 4.02
9035 11163 1.816863 GCCACTCCGTCAAGGACTCA 61.817 60.000 0.00 0.00 45.98 3.41
9203 11357 2.232298 GAGGGCCTTGGAGAGTGACG 62.232 65.000 7.89 0.00 0.00 4.35
9228 11382 2.115291 GCGCCAAGATCTGAACCCC 61.115 63.158 0.00 0.00 0.00 4.95
9235 11389 3.370953 CCAAGATCTGAACCCCGAAGATT 60.371 47.826 0.00 0.00 30.83 2.40
9285 11439 1.278985 ACGACTTTGGCATGGAGATGA 59.721 47.619 0.00 0.00 0.00 2.92
9404 11564 2.124570 CCAGACCATGCGAAGGGG 60.125 66.667 0.00 0.00 0.00 4.79
9421 11581 3.407657 GCGAGAAGCTGAGCCATG 58.592 61.111 0.00 0.00 44.04 3.66
9425 11585 1.654317 GAGAAGCTGAGCCATGTCTG 58.346 55.000 0.00 0.00 0.00 3.51
9434 11594 1.277557 GAGCCATGTCTGTTCTGGAGT 59.722 52.381 0.00 0.00 31.38 3.85
9438 11598 2.234661 CCATGTCTGTTCTGGAGTAGCA 59.765 50.000 0.00 0.00 31.38 3.49
9470 11630 1.163420 AATGCGCGACAACCACTTCA 61.163 50.000 12.10 0.00 0.00 3.02
9474 11634 1.840630 CGCGACAACCACTTCATGCA 61.841 55.000 0.00 0.00 0.00 3.96
9513 11673 1.595058 AAGGGTTTTGGGTGGGTCCA 61.595 55.000 0.00 0.00 38.11 4.02
9534 11694 1.663739 GTGGCAGACACGTACCTGA 59.336 57.895 17.38 0.00 40.85 3.86
9543 11703 0.959553 CACGTACCTGACAGTGGTCT 59.040 55.000 0.93 0.00 44.61 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 7.054124 AGGTATGAATTGATGAAACCGTGTAT 58.946 34.615 0.00 0.00 0.00 2.29
44 45 4.400567 GCTTTTACCTTGATCTCCTGCAAT 59.599 41.667 0.00 0.00 0.00 3.56
103 104 1.484653 CTGGTGGGATCCAACGTGATA 59.515 52.381 15.23 0.00 45.71 2.15
124 125 2.181125 TGTACTTCGCATAACCTGGGA 58.819 47.619 0.00 0.00 44.36 4.37
142 143 1.556911 AGACCGCTCCATCAGAATTGT 59.443 47.619 0.00 0.00 0.00 2.71
251 252 3.455910 CCTCCAATGTAGGTGGATCTGAA 59.544 47.826 0.00 0.00 44.19 3.02
281 282 3.454375 CAACGACATAGCTTCCCGTATT 58.546 45.455 0.00 0.00 32.81 1.89
329 330 1.675641 GCAATCCGAGGCAACCTGT 60.676 57.895 0.00 0.00 31.76 4.00
456 457 6.515696 GCTTCAAAGTTTGAGCTCCTATGTTT 60.516 38.462 22.27 1.95 41.38 2.83
460 462 4.916183 AGCTTCAAAGTTTGAGCTCCTAT 58.084 39.130 24.65 11.76 41.38 2.57
513 519 0.613292 TAACCAAACATGGCGGCCAT 60.613 50.000 28.37 28.37 46.37 4.40
540 546 1.284785 AGGCGGATGAAAGATTTCCCA 59.715 47.619 3.00 0.00 36.36 4.37
558 564 6.727824 AATTCGTCACAATGTTTAGAGAGG 57.272 37.500 0.00 0.00 0.00 3.69
614 620 7.927048 TCTTTTAAGAAAGTCCAGCAGTTAAC 58.073 34.615 0.00 0.00 42.32 2.01
615 621 8.514330 TTCTTTTAAGAAAGTCCAGCAGTTAA 57.486 30.769 2.54 0.00 41.75 2.01
616 622 7.990886 TCTTCTTTTAAGAAAGTCCAGCAGTTA 59.009 33.333 6.40 0.00 43.84 2.24
617 623 6.828785 TCTTCTTTTAAGAAAGTCCAGCAGTT 59.171 34.615 6.40 0.00 43.84 3.16
618 624 6.357367 TCTTCTTTTAAGAAAGTCCAGCAGT 58.643 36.000 6.40 0.00 43.84 4.40
619 625 6.867662 TCTTCTTTTAAGAAAGTCCAGCAG 57.132 37.500 6.40 0.00 43.84 4.24
620 626 7.054124 TCTTCTTCTTTTAAGAAAGTCCAGCA 58.946 34.615 6.40 0.00 43.84 4.41
621 627 7.497925 TCTTCTTCTTTTAAGAAAGTCCAGC 57.502 36.000 6.40 0.00 43.84 4.85
634 640 9.574458 GCAGTTAACTTCTTTTCTTCTTCTTTT 57.426 29.630 5.07 0.00 0.00 2.27
635 641 8.961634 AGCAGTTAACTTCTTTTCTTCTTCTTT 58.038 29.630 5.07 0.00 0.00 2.52
636 642 8.401709 CAGCAGTTAACTTCTTTTCTTCTTCTT 58.598 33.333 5.07 0.00 0.00 2.52
637 643 7.012799 CCAGCAGTTAACTTCTTTTCTTCTTCT 59.987 37.037 5.07 0.00 0.00 2.85
638 644 7.012421 TCCAGCAGTTAACTTCTTTTCTTCTTC 59.988 37.037 5.07 0.00 0.00 2.87
639 645 6.828785 TCCAGCAGTTAACTTCTTTTCTTCTT 59.171 34.615 5.07 0.00 0.00 2.52
640 646 6.261158 GTCCAGCAGTTAACTTCTTTTCTTCT 59.739 38.462 5.07 0.00 0.00 2.85
641 647 6.261158 AGTCCAGCAGTTAACTTCTTTTCTTC 59.739 38.462 5.07 0.00 0.00 2.87
642 648 6.038714 CAGTCCAGCAGTTAACTTCTTTTCTT 59.961 38.462 5.07 0.00 0.00 2.52
643 649 5.529060 CAGTCCAGCAGTTAACTTCTTTTCT 59.471 40.000 5.07 1.73 0.00 2.52
644 650 5.527582 TCAGTCCAGCAGTTAACTTCTTTTC 59.472 40.000 5.07 0.00 0.00 2.29
645 651 5.437060 TCAGTCCAGCAGTTAACTTCTTTT 58.563 37.500 5.07 0.00 0.00 2.27
646 652 5.036117 TCAGTCCAGCAGTTAACTTCTTT 57.964 39.130 5.07 0.00 0.00 2.52
647 653 4.689612 TCAGTCCAGCAGTTAACTTCTT 57.310 40.909 5.07 0.00 0.00 2.52
648 654 4.381411 GTTCAGTCCAGCAGTTAACTTCT 58.619 43.478 5.07 3.18 0.00 2.85
649 655 3.498777 GGTTCAGTCCAGCAGTTAACTTC 59.501 47.826 5.07 0.24 0.00 3.01
650 656 3.477530 GGTTCAGTCCAGCAGTTAACTT 58.522 45.455 5.07 0.00 0.00 2.66
651 657 2.224548 GGGTTCAGTCCAGCAGTTAACT 60.225 50.000 1.12 1.12 0.00 2.24
652 658 2.152016 GGGTTCAGTCCAGCAGTTAAC 58.848 52.381 0.00 0.00 0.00 2.01
653 659 1.270625 CGGGTTCAGTCCAGCAGTTAA 60.271 52.381 0.00 0.00 0.00 2.01
654 660 0.320374 CGGGTTCAGTCCAGCAGTTA 59.680 55.000 0.00 0.00 0.00 2.24
655 661 1.071471 CGGGTTCAGTCCAGCAGTT 59.929 57.895 0.00 0.00 0.00 3.16
656 662 1.407656 TTCGGGTTCAGTCCAGCAGT 61.408 55.000 0.00 0.00 0.00 4.40
657 663 0.671781 CTTCGGGTTCAGTCCAGCAG 60.672 60.000 0.00 0.00 0.00 4.24
658 664 1.371183 CTTCGGGTTCAGTCCAGCA 59.629 57.895 0.00 0.00 0.00 4.41
659 665 1.376037 CCTTCGGGTTCAGTCCAGC 60.376 63.158 0.00 0.00 0.00 4.85
660 666 1.376037 GCCTTCGGGTTCAGTCCAG 60.376 63.158 0.00 0.00 37.45 3.86
661 667 2.747686 GCCTTCGGGTTCAGTCCA 59.252 61.111 0.00 0.00 37.45 4.02
662 668 2.434359 CGCCTTCGGGTTCAGTCC 60.434 66.667 0.00 0.00 37.45 3.85
663 669 0.037975 TAACGCCTTCGGGTTCAGTC 60.038 55.000 0.00 0.00 43.51 3.51
664 670 0.320160 GTAACGCCTTCGGGTTCAGT 60.320 55.000 0.00 0.00 43.51 3.41
665 671 0.320073 TGTAACGCCTTCGGGTTCAG 60.320 55.000 0.00 0.00 43.51 3.02
666 672 0.106335 TTGTAACGCCTTCGGGTTCA 59.894 50.000 0.00 0.00 43.51 3.18
667 673 1.395954 GATTGTAACGCCTTCGGGTTC 59.604 52.381 0.00 0.00 43.51 3.62
668 674 1.270947 TGATTGTAACGCCTTCGGGTT 60.271 47.619 0.00 0.00 46.06 4.11
669 675 0.322322 TGATTGTAACGCCTTCGGGT 59.678 50.000 0.00 0.00 40.69 5.28
670 676 0.725117 GTGATTGTAACGCCTTCGGG 59.275 55.000 0.00 0.00 40.69 5.14
671 677 1.659098 GAGTGATTGTAACGCCTTCGG 59.341 52.381 0.00 0.00 40.69 4.30
672 678 2.092211 GTGAGTGATTGTAACGCCTTCG 59.908 50.000 0.00 0.00 42.43 3.79
673 679 2.415512 GGTGAGTGATTGTAACGCCTTC 59.584 50.000 0.00 0.00 0.00 3.46
674 680 2.038557 AGGTGAGTGATTGTAACGCCTT 59.961 45.455 0.00 0.00 38.11 4.35
675 681 1.623811 AGGTGAGTGATTGTAACGCCT 59.376 47.619 0.00 0.00 36.77 5.52
676 682 1.732259 CAGGTGAGTGATTGTAACGCC 59.268 52.381 0.00 0.00 0.00 5.68
677 683 1.732259 CCAGGTGAGTGATTGTAACGC 59.268 52.381 0.00 0.00 0.00 4.84
678 684 2.346803 CCCAGGTGAGTGATTGTAACG 58.653 52.381 0.00 0.00 0.00 3.18
679 685 2.084546 GCCCAGGTGAGTGATTGTAAC 58.915 52.381 0.00 0.00 0.00 2.50
680 686 1.338674 CGCCCAGGTGAGTGATTGTAA 60.339 52.381 0.00 0.00 0.00 2.41
681 687 0.249120 CGCCCAGGTGAGTGATTGTA 59.751 55.000 0.00 0.00 0.00 2.41
682 688 1.003355 CGCCCAGGTGAGTGATTGT 60.003 57.895 0.00 0.00 0.00 2.71
683 689 0.107508 ATCGCCCAGGTGAGTGATTG 60.108 55.000 6.08 0.00 38.09 2.67
684 690 0.107508 CATCGCCCAGGTGAGTGATT 60.108 55.000 6.08 0.00 38.09 2.57
685 691 1.524002 CATCGCCCAGGTGAGTGAT 59.476 57.895 6.08 0.00 38.09 3.06
686 692 2.981302 CATCGCCCAGGTGAGTGA 59.019 61.111 6.08 0.00 38.09 3.41
687 693 2.821366 GCATCGCCCAGGTGAGTG 60.821 66.667 6.08 5.86 38.09 3.51
688 694 2.410322 TTTGCATCGCCCAGGTGAGT 62.410 55.000 6.08 0.00 38.09 3.41
689 695 1.033746 ATTTGCATCGCCCAGGTGAG 61.034 55.000 6.08 0.01 38.09 3.51
690 696 1.001020 ATTTGCATCGCCCAGGTGA 60.001 52.632 1.73 1.73 39.09 4.02
691 697 1.033746 AGATTTGCATCGCCCAGGTG 61.034 55.000 0.00 0.00 34.17 4.00
692 698 0.323725 AAGATTTGCATCGCCCAGGT 60.324 50.000 0.00 0.00 34.17 4.00
693 699 0.383231 GAAGATTTGCATCGCCCAGG 59.617 55.000 0.00 0.00 34.17 4.45
694 700 1.332997 GAGAAGATTTGCATCGCCCAG 59.667 52.381 0.00 0.00 34.17 4.45
695 701 1.339920 TGAGAAGATTTGCATCGCCCA 60.340 47.619 0.00 0.00 34.17 5.36
696 702 1.382522 TGAGAAGATTTGCATCGCCC 58.617 50.000 0.00 0.00 34.17 6.13
697 703 2.679837 TCTTGAGAAGATTTGCATCGCC 59.320 45.455 0.00 0.00 34.17 5.54
698 704 4.548991 ATCTTGAGAAGATTTGCATCGC 57.451 40.909 0.00 0.00 45.75 4.58
708 714 3.260128 TCAAGCAGCTGATCTTGAGAAGA 59.740 43.478 24.46 9.42 42.43 2.87
709 715 3.371591 GTCAAGCAGCTGATCTTGAGAAG 59.628 47.826 27.18 8.74 46.29 2.85
710 716 3.244318 TGTCAAGCAGCTGATCTTGAGAA 60.244 43.478 27.18 19.20 46.29 2.87
711 717 2.301009 TGTCAAGCAGCTGATCTTGAGA 59.699 45.455 27.18 24.52 46.29 3.27
786 792 2.786495 CGCTAGGTGTCATCCGGCT 61.786 63.158 0.00 0.00 0.00 5.52
813 819 1.523758 AGAGGTTGCGTTTTGGCTAG 58.476 50.000 0.00 0.00 0.00 3.42
814 820 2.843401 TAGAGGTTGCGTTTTGGCTA 57.157 45.000 0.00 0.00 0.00 3.93
815 821 2.200373 ATAGAGGTTGCGTTTTGGCT 57.800 45.000 0.00 0.00 0.00 4.75
816 822 2.227865 TGAATAGAGGTTGCGTTTTGGC 59.772 45.455 0.00 0.00 0.00 4.52
823 829 0.647410 CAGCGTGAATAGAGGTTGCG 59.353 55.000 0.00 0.00 0.00 4.85
851 857 3.304391 GCAGTGTGAATTACTCGCCAAAA 60.304 43.478 0.00 0.00 33.24 2.44
852 858 2.225491 GCAGTGTGAATTACTCGCCAAA 59.775 45.455 0.00 0.00 33.24 3.28
853 859 1.804151 GCAGTGTGAATTACTCGCCAA 59.196 47.619 0.00 0.00 33.24 4.52
854 860 1.438651 GCAGTGTGAATTACTCGCCA 58.561 50.000 0.00 0.00 33.24 5.69
855 861 0.727398 GGCAGTGTGAATTACTCGCC 59.273 55.000 0.00 0.00 36.30 5.54
856 862 1.438651 TGGCAGTGTGAATTACTCGC 58.561 50.000 0.00 0.00 34.93 5.03
857 863 2.282555 CGATGGCAGTGTGAATTACTCG 59.717 50.000 0.00 0.00 0.00 4.18
858 864 2.609459 CCGATGGCAGTGTGAATTACTC 59.391 50.000 0.00 0.00 0.00 2.59
859 865 2.632377 CCGATGGCAGTGTGAATTACT 58.368 47.619 0.00 0.00 0.00 2.24
860 866 1.670811 CCCGATGGCAGTGTGAATTAC 59.329 52.381 0.00 0.00 0.00 1.89
862 868 0.327924 TCCCGATGGCAGTGTGAATT 59.672 50.000 0.00 0.00 0.00 2.17
864 870 1.296392 CTCCCGATGGCAGTGTGAA 59.704 57.895 0.00 0.00 0.00 3.18
865 871 0.613572 TACTCCCGATGGCAGTGTGA 60.614 55.000 0.00 0.00 0.00 3.58
866 872 0.460284 GTACTCCCGATGGCAGTGTG 60.460 60.000 0.00 0.00 0.00 3.82
868 874 0.249120 TTGTACTCCCGATGGCAGTG 59.751 55.000 0.00 0.00 0.00 3.66
869 875 0.537188 CTTGTACTCCCGATGGCAGT 59.463 55.000 0.00 0.00 0.00 4.40
870 876 0.179073 CCTTGTACTCCCGATGGCAG 60.179 60.000 0.00 0.00 0.00 4.85
871 877 1.622607 CCCTTGTACTCCCGATGGCA 61.623 60.000 0.00 0.00 0.00 4.92
872 878 1.146263 CCCTTGTACTCCCGATGGC 59.854 63.158 0.00 0.00 0.00 4.40
873 879 0.909623 AACCCTTGTACTCCCGATGG 59.090 55.000 0.00 0.00 0.00 3.51
874 880 2.629051 GAAACCCTTGTACTCCCGATG 58.371 52.381 0.00 0.00 0.00 3.84
875 881 1.558294 GGAAACCCTTGTACTCCCGAT 59.442 52.381 0.00 0.00 0.00 4.18
877 883 0.390735 CGGAAACCCTTGTACTCCCG 60.391 60.000 0.00 0.00 0.00 5.14
878 884 0.035725 CCGGAAACCCTTGTACTCCC 60.036 60.000 0.00 0.00 0.00 4.30
879 885 0.675837 GCCGGAAACCCTTGTACTCC 60.676 60.000 5.05 0.00 0.00 3.85
883 889 1.128809 TGGAGCCGGAAACCCTTGTA 61.129 55.000 5.05 0.00 0.00 2.41
884 890 1.789576 ATGGAGCCGGAAACCCTTGT 61.790 55.000 5.05 0.00 0.00 3.16
941 1248 0.982852 ATGGGGCGTGGAGAGATGAA 60.983 55.000 0.00 0.00 0.00 2.57
998 1305 3.060020 CTTGGCTTGCTCGGCATGG 62.060 63.158 11.69 5.10 38.76 3.66
1244 1557 0.671251 GGACGCGAAGGAGAGATGAT 59.329 55.000 15.93 0.00 0.00 2.45
1344 1657 4.454728 TGCATGGAAATAAGGCTTCAAC 57.545 40.909 1.30 0.00 0.00 3.18
1388 1701 3.692257 CCTGGAGTATTCTAGGCATGG 57.308 52.381 4.67 0.00 43.99 3.66
1679 2428 9.559958 CAAAGAACAAGGTTGCTAAACATATAG 57.440 33.333 0.00 0.00 38.10 1.31
1705 2454 7.309920 ACCCAAAATACATCGACAACAAATAC 58.690 34.615 0.00 0.00 0.00 1.89
1873 2622 2.820197 CCAAAAGGGCTAGAACTCCAAC 59.180 50.000 0.00 0.00 0.00 3.77
1898 2647 2.052468 TGCATCATCCCTGCTCTGTAT 58.948 47.619 0.00 0.00 40.34 2.29
1899 2648 1.499368 TGCATCATCCCTGCTCTGTA 58.501 50.000 0.00 0.00 40.34 2.74
1992 2741 5.361857 AGGAAATGCTGGACCATGATAAAAG 59.638 40.000 0.00 0.00 0.00 2.27
2324 3073 6.987992 GTGGGATCGTAAACAGAAACCATATA 59.012 38.462 0.00 0.00 32.70 0.86
2553 3302 1.202592 GCCTAAGTAGAGGGCTGCTTC 60.203 57.143 0.00 0.00 42.41 3.86
2692 3450 7.566760 TTCAAGTGTTGAACTGTCATACAAT 57.433 32.000 0.00 0.00 44.21 2.71
2910 3668 2.294233 TGTTTCTTCAGCAACCATCAGC 59.706 45.455 0.00 0.00 0.00 4.26
3013 3771 5.877012 ACTTTATGTCCATCTGTAGTTGCAG 59.123 40.000 0.00 0.00 37.81 4.41
3096 3854 8.925161 TGCTAGCAAAATTAACCAATATCAAC 57.075 30.769 16.84 0.00 0.00 3.18
3324 4604 1.179152 TGCTTCCATGCCAGATGTTG 58.821 50.000 0.00 0.00 0.00 3.33
3345 4625 9.524496 AAATCAATTGCTCCTCATAATGCTATA 57.476 29.630 0.00 0.00 0.00 1.31
3455 4735 6.126863 ACATGGGTAGTCAAAGAGATTTCA 57.873 37.500 0.00 0.00 0.00 2.69
3456 4736 6.763610 CCTACATGGGTAGTCAAAGAGATTTC 59.236 42.308 0.00 0.00 44.54 2.17
3653 4934 1.134367 TCTATCTGGGTTGAGAACGCG 59.866 52.381 3.53 3.53 46.27 6.01
3873 5160 8.814038 AAATAATTAAGTGAGCAATCTCCACT 57.186 30.769 0.00 0.00 38.58 4.00
4272 5562 6.531240 GGGTTGAATGTACTGCAATTATTGTG 59.469 38.462 6.81 3.16 0.00 3.33
4421 5711 7.351952 GGACAGAGGGGGTACTATTTATTTTT 58.648 38.462 0.00 0.00 0.00 1.94
4424 5714 4.912133 GGGACAGAGGGGGTACTATTTATT 59.088 45.833 0.00 0.00 0.00 1.40
4425 5715 4.077626 TGGGACAGAGGGGGTACTATTTAT 60.078 45.833 0.00 0.00 0.00 1.40
4426 5716 3.275497 TGGGACAGAGGGGGTACTATTTA 59.725 47.826 0.00 0.00 0.00 1.40
4427 5717 2.046729 TGGGACAGAGGGGGTACTATTT 59.953 50.000 0.00 0.00 0.00 1.40
4428 5718 1.654997 TGGGACAGAGGGGGTACTATT 59.345 52.381 0.00 0.00 0.00 1.73
4429 5719 1.326055 TGGGACAGAGGGGGTACTAT 58.674 55.000 0.00 0.00 0.00 2.12
4430 5720 2.823544 TGGGACAGAGGGGGTACTA 58.176 57.895 0.00 0.00 0.00 1.82
4431 5721 3.629022 TGGGACAGAGGGGGTACT 58.371 61.111 0.00 0.00 0.00 2.73
4443 5733 7.225931 TGTCAAAACGCTCTTATATTATGGGAC 59.774 37.037 0.00 0.00 0.00 4.46
4444 5734 7.225931 GTGTCAAAACGCTCTTATATTATGGGA 59.774 37.037 0.00 0.00 32.98 4.37
4445 5735 7.226720 AGTGTCAAAACGCTCTTATATTATGGG 59.773 37.037 0.00 0.00 42.59 4.00
4446 5736 8.142994 AGTGTCAAAACGCTCTTATATTATGG 57.857 34.615 0.00 0.00 42.59 2.74
4448 5738 9.811995 TGTAGTGTCAAAACGCTCTTATATTAT 57.188 29.630 0.00 0.00 42.59 1.28
4449 5739 9.079833 GTGTAGTGTCAAAACGCTCTTATATTA 57.920 33.333 0.00 0.00 42.59 0.98
4450 5740 7.817962 AGTGTAGTGTCAAAACGCTCTTATATT 59.182 33.333 0.00 0.00 42.59 1.28
4452 5742 6.684686 AGTGTAGTGTCAAAACGCTCTTATA 58.315 36.000 0.00 0.00 42.59 0.98
4453 5743 5.539048 AGTGTAGTGTCAAAACGCTCTTAT 58.461 37.500 0.00 0.00 42.59 1.73
4454 5744 4.940463 AGTGTAGTGTCAAAACGCTCTTA 58.060 39.130 0.00 0.00 42.59 2.10
4456 5746 3.454371 AGTGTAGTGTCAAAACGCTCT 57.546 42.857 0.00 0.00 42.59 4.09
4457 5747 4.296690 ACTAGTGTAGTGTCAAAACGCTC 58.703 43.478 0.00 0.00 42.59 5.03
4483 5773 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
4484 5774 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
4485 5775 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
4486 5776 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
4487 5777 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
4489 5779 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
4490 5780 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
4492 5782 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
4493 5783 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
4495 5785 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
4496 5786 4.474303 TTACTCCCTCCGTCCCATAATA 57.526 45.455 0.00 0.00 0.00 0.98
4497 5787 3.339713 TTACTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
4498 5788 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
4499 5789 2.767960 GTTTTACTCCCTCCGTCCCATA 59.232 50.000 0.00 0.00 0.00 2.74
4500 5790 1.558294 GTTTTACTCCCTCCGTCCCAT 59.442 52.381 0.00 0.00 0.00 4.00
4502 5792 0.108472 CGTTTTACTCCCTCCGTCCC 60.108 60.000 0.00 0.00 0.00 4.46
4503 5793 0.605083 ACGTTTTACTCCCTCCGTCC 59.395 55.000 0.00 0.00 0.00 4.79
4504 5794 3.489908 GGATACGTTTTACTCCCTCCGTC 60.490 52.174 0.00 0.00 0.00 4.79
4505 5795 2.428530 GGATACGTTTTACTCCCTCCGT 59.571 50.000 0.00 0.00 0.00 4.69
4506 5796 3.089573 GGATACGTTTTACTCCCTCCG 57.910 52.381 0.00 0.00 0.00 4.63
4521 5811 5.554822 TGAAAAAGTGCCAATACGGATAC 57.445 39.130 0.00 0.00 36.56 2.24
4522 5812 6.576662 TTTGAAAAAGTGCCAATACGGATA 57.423 33.333 0.00 0.00 36.56 2.59
4523 5813 5.461032 TTTGAAAAAGTGCCAATACGGAT 57.539 34.783 0.00 0.00 36.56 4.18
4524 5814 4.920640 TTTGAAAAAGTGCCAATACGGA 57.079 36.364 0.00 0.00 36.56 4.69
4525 5815 5.694006 TCATTTTGAAAAAGTGCCAATACGG 59.306 36.000 0.00 0.00 38.11 4.02
4526 5816 6.761731 TCATTTTGAAAAAGTGCCAATACG 57.238 33.333 0.00 0.00 0.00 3.06
4527 5817 8.309163 TCATCATTTTGAAAAAGTGCCAATAC 57.691 30.769 0.00 0.00 0.00 1.89
4529 5819 7.804843 TTCATCATTTTGAAAAAGTGCCAAT 57.195 28.000 0.00 0.00 32.82 3.16
4530 5820 7.804843 ATTCATCATTTTGAAAAAGTGCCAA 57.195 28.000 0.00 0.00 38.98 4.52
4531 5821 7.804843 AATTCATCATTTTGAAAAAGTGCCA 57.195 28.000 0.00 0.00 38.98 4.92
4533 5823 9.305110 CGTAAATTCATCATTTTGAAAAAGTGC 57.695 29.630 0.00 0.00 38.98 4.40
4560 5850 2.494471 CAGTATCGGGCCAATACGGATA 59.506 50.000 17.25 1.00 36.56 2.59
4563 5853 0.677288 TCAGTATCGGGCCAATACGG 59.323 55.000 17.26 16.87 35.26 4.02
4564 5854 2.743636 ATCAGTATCGGGCCAATACG 57.256 50.000 17.26 13.54 35.26 3.06
4565 5855 3.369157 GGGTATCAGTATCGGGCCAATAC 60.369 52.174 16.13 16.13 0.00 1.89
4566 5856 2.835764 GGGTATCAGTATCGGGCCAATA 59.164 50.000 4.39 0.00 0.00 1.90
4570 5860 1.276622 ATGGGTATCAGTATCGGGCC 58.723 55.000 0.00 0.00 0.00 5.80
4571 5861 3.069729 GGATATGGGTATCAGTATCGGGC 59.930 52.174 0.00 0.00 38.77 6.13
4573 5863 3.952323 ACGGATATGGGTATCAGTATCGG 59.048 47.826 0.45 0.00 41.78 4.18
4574 5864 6.879276 ATACGGATATGGGTATCAGTATCG 57.121 41.667 12.39 3.73 46.49 2.92
4593 5883 0.595053 AGCTCGAATGCACCGATACG 60.595 55.000 12.56 4.17 35.35 3.06
4594 5884 0.855349 CAGCTCGAATGCACCGATAC 59.145 55.000 12.56 8.77 35.35 2.24
4595 5885 0.459899 ACAGCTCGAATGCACCGATA 59.540 50.000 12.56 0.00 35.35 2.92
4598 5888 1.061131 CTAAACAGCTCGAATGCACCG 59.939 52.381 4.14 4.14 34.99 4.94
4599 5889 1.398390 CCTAAACAGCTCGAATGCACC 59.602 52.381 0.00 0.00 34.99 5.01
4601 5891 1.086696 GCCTAAACAGCTCGAATGCA 58.913 50.000 0.00 0.00 34.99 3.96
4602 5892 1.086696 TGCCTAAACAGCTCGAATGC 58.913 50.000 0.00 0.00 0.00 3.56
4603 5893 2.938451 TGATGCCTAAACAGCTCGAATG 59.062 45.455 0.00 0.00 0.00 2.67
4604 5894 3.266510 TGATGCCTAAACAGCTCGAAT 57.733 42.857 0.00 0.00 0.00 3.34
4605 5895 2.760634 TGATGCCTAAACAGCTCGAA 57.239 45.000 0.00 0.00 0.00 3.71
4607 5897 3.374988 TGATTTGATGCCTAAACAGCTCG 59.625 43.478 0.00 0.00 0.00 5.03
4608 5898 4.970662 TGATTTGATGCCTAAACAGCTC 57.029 40.909 0.00 0.00 0.00 4.09
4609 5899 5.927281 AATGATTTGATGCCTAAACAGCT 57.073 34.783 0.00 0.00 0.00 4.24
4610 5900 6.335777 AGAAATGATTTGATGCCTAAACAGC 58.664 36.000 0.00 0.00 0.00 4.40
4711 6002 7.017645 GTGCTACACATCTTTGTAAGTGATTG 58.982 38.462 0.00 0.00 35.97 2.67
5837 7342 4.640647 AGAAAAGGGCCTGAACGATATTTC 59.359 41.667 6.92 10.90 0.00 2.17
5909 7417 9.442062 TGAATATAGTTAAACATACTCCCTCCA 57.558 33.333 0.00 0.00 0.00 3.86
6001 7884 4.533919 TTGTCAATAAACATTGCCCTGG 57.466 40.909 0.00 0.00 0.00 4.45
6129 8012 5.713025 CAATGTAACCAGGAAGTTTGATGG 58.287 41.667 0.00 0.00 38.83 3.51
6743 8626 9.827411 CTGTTATCTGAAATATCATGCTTGATG 57.173 33.333 21.89 7.07 42.60 3.07
6971 8854 4.440250 CCATCTAGATCGTCAGGTTTTCGT 60.440 45.833 1.03 0.00 0.00 3.85
7017 8988 6.934645 CAGTAGTTTTGTCTGGAAGGTATTCA 59.065 38.462 0.00 0.00 37.15 2.57
7018 8989 6.128254 GCAGTAGTTTTGTCTGGAAGGTATTC 60.128 42.308 0.00 0.00 34.46 1.75
7192 9163 2.578163 CTTCCTCGCCTTCCATCGCA 62.578 60.000 0.00 0.00 0.00 5.10
7320 9291 9.425893 CATCAATAACTAAAATACGCTGACTTG 57.574 33.333 0.00 0.00 0.00 3.16
7499 9470 5.166398 CCAATTTTTCAGAAGTGATCCTGC 58.834 41.667 0.00 0.00 30.85 4.85
7811 9791 7.459125 AGAATACCTGGCTCTTATCATATCCAA 59.541 37.037 0.00 0.00 0.00 3.53
7959 9945 5.710513 TCAATACACAAGAAGCTGCAAAT 57.289 34.783 1.02 0.00 0.00 2.32
8213 10199 3.308035 ACATCCTACCCACTGACGATA 57.692 47.619 0.00 0.00 0.00 2.92
8370 10372 8.725606 AACAAACATGGGGCATAGATATTATT 57.274 30.769 0.00 0.00 0.00 1.40
8371 10373 8.725606 AAACAAACATGGGGCATAGATATTAT 57.274 30.769 0.00 0.00 0.00 1.28
8372 10374 7.232534 GGAAACAAACATGGGGCATAGATATTA 59.767 37.037 0.00 0.00 0.00 0.98
8388 10390 3.517296 TGGCCATCTAGGAAACAAACA 57.483 42.857 0.00 0.00 41.22 2.83
8773 10890 3.917760 GAGGATGTCGGGCGAGGG 61.918 72.222 0.00 0.00 0.00 4.30
8851 10969 1.228003 AACCGTGGCGTCCAAATCA 60.228 52.632 0.00 0.00 34.18 2.57
8992 11120 1.809619 CGCAACCGTGATCCGATGT 60.810 57.895 5.32 0.00 39.56 3.06
9035 11163 2.558617 TGCGTTCATGCAGCAGATT 58.441 47.368 0.00 0.00 40.62 2.40
9404 11564 1.427592 GACATGGCTCAGCTTCTCGC 61.428 60.000 0.00 0.00 39.57 5.03
9420 11580 2.297315 CAGTGCTACTCCAGAACAGACA 59.703 50.000 0.00 0.00 34.84 3.41
9421 11581 2.558795 TCAGTGCTACTCCAGAACAGAC 59.441 50.000 0.00 0.00 34.84 3.51
9425 11585 2.480416 CCGATCAGTGCTACTCCAGAAC 60.480 54.545 0.00 0.00 32.07 3.01
9434 11594 2.486918 CATTCATGCCGATCAGTGCTA 58.513 47.619 0.00 0.00 0.00 3.49
9487 11647 1.834822 CCCAAAACCCTTTCGCCCA 60.835 57.895 0.00 0.00 0.00 5.36
9488 11648 1.835267 ACCCAAAACCCTTTCGCCC 60.835 57.895 0.00 0.00 0.00 6.13
9499 11659 2.015726 ACCCTGGACCCACCCAAAA 61.016 57.895 0.00 0.00 35.47 2.44
9513 11673 2.580601 GGTACGTGTCTGCCACCCT 61.581 63.158 0.00 0.00 41.26 4.34
9527 11687 0.608640 CCCAGACCACTGTCAGGTAC 59.391 60.000 4.53 0.00 44.46 3.34
9534 11694 1.052124 TCCGTTTCCCAGACCACTGT 61.052 55.000 0.00 0.00 42.05 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.