Multiple sequence alignment - TraesCS6A01G212600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G212600 chr6A 100.000 3413 0 0 1 3413 385824932 385821520 0.000000e+00 6303
1 TraesCS6A01G212600 chr6A 95.838 2523 102 1 894 3413 385750043 385747521 0.000000e+00 4074
2 TraesCS6A01G212600 chr6B 96.064 2490 90 5 894 3378 426826636 426829122 0.000000e+00 4048
3 TraesCS6A01G212600 chr6B 97.024 2218 61 4 884 3099 426736084 426738298 0.000000e+00 3725
4 TraesCS6A01G212600 chr6B 95.584 1902 73 4 1515 3413 426744196 426746089 0.000000e+00 3037
5 TraesCS6A01G212600 chr3A 93.882 850 50 2 1 848 674092630 674093479 0.000000e+00 1280
6 TraesCS6A01G212600 chr1A 92.723 852 56 5 1 848 2346611 2345762 0.000000e+00 1225
7 TraesCS6A01G212600 chr2B 89.866 819 80 3 1 818 786248006 786248822 0.000000e+00 1050
8 TraesCS6A01G212600 chr2B 76.027 292 68 2 289 579 637864211 637863921 2.120000e-32 150
9 TraesCS6A01G212600 chr4A 84.211 836 125 7 19 849 687018982 687019815 0.000000e+00 806
10 TraesCS6A01G212600 chr7B 82.063 853 144 7 1 848 538230210 538229362 0.000000e+00 719
11 TraesCS6A01G212600 chr6D 81.938 836 141 9 21 849 405833790 405834622 0.000000e+00 699
12 TraesCS6A01G212600 chr3D 84.307 274 35 5 2964 3231 323276893 323277164 9.390000e-66 261
13 TraesCS6A01G212600 chr5A 84.307 274 33 8 2964 3231 634020191 634019922 3.380000e-65 259
14 TraesCS6A01G212600 chr4D 83.942 274 36 6 2964 3231 63206600 63206871 4.370000e-64 255
15 TraesCS6A01G212600 chr4D 88.068 176 17 4 2961 3134 346461341 346461514 4.460000e-49 206
16 TraesCS6A01G212600 chrUn 88.439 173 16 4 2964 3134 110773791 110773961 4.460000e-49 206


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G212600 chr6A 385821520 385824932 3412 True 6303 6303 100.000 1 3413 1 chr6A.!!$R2 3412
1 TraesCS6A01G212600 chr6A 385747521 385750043 2522 True 4074 4074 95.838 894 3413 1 chr6A.!!$R1 2519
2 TraesCS6A01G212600 chr6B 426826636 426829122 2486 False 4048 4048 96.064 894 3378 1 chr6B.!!$F3 2484
3 TraesCS6A01G212600 chr6B 426736084 426738298 2214 False 3725 3725 97.024 884 3099 1 chr6B.!!$F1 2215
4 TraesCS6A01G212600 chr6B 426744196 426746089 1893 False 3037 3037 95.584 1515 3413 1 chr6B.!!$F2 1898
5 TraesCS6A01G212600 chr3A 674092630 674093479 849 False 1280 1280 93.882 1 848 1 chr3A.!!$F1 847
6 TraesCS6A01G212600 chr1A 2345762 2346611 849 True 1225 1225 92.723 1 848 1 chr1A.!!$R1 847
7 TraesCS6A01G212600 chr2B 786248006 786248822 816 False 1050 1050 89.866 1 818 1 chr2B.!!$F1 817
8 TraesCS6A01G212600 chr4A 687018982 687019815 833 False 806 806 84.211 19 849 1 chr4A.!!$F1 830
9 TraesCS6A01G212600 chr7B 538229362 538230210 848 True 719 719 82.063 1 848 1 chr7B.!!$R1 847
10 TraesCS6A01G212600 chr6D 405833790 405834622 832 False 699 699 81.938 21 849 1 chr6D.!!$F1 828

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
758 769 1.307355 TTGATCGCTCCACGGACGTA 61.307 55.0 0.0 0.0 43.89 3.57 F
1497 1512 0.106318 GGGCTCGACTACCTTCCCTA 60.106 60.0 0.0 0.0 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1736 1751 0.815734 CTTCTCCATGTCGTACCCGT 59.184 55.0 0.0 0.0 35.01 5.28 R
3238 3262 0.983378 GGGTGGGCTGTGGAGAGTAT 60.983 60.0 0.0 0.0 0.00 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 4.879197 TGCCATCTCTAATCATCGACAT 57.121 40.909 0.00 0.00 0.00 3.06
64 65 4.563061 TGCCATCTCTAATCATCGACATG 58.437 43.478 0.00 0.00 0.00 3.21
84 85 6.662755 ACATGGCATTCTTCAGAGGTTTATA 58.337 36.000 0.00 0.00 0.00 0.98
131 132 3.361281 AGAAATTCCCCGTAAAGTCCC 57.639 47.619 0.00 0.00 0.00 4.46
321 323 4.081087 TCTCCTCTAAAATTCCAAGGTCCG 60.081 45.833 0.00 0.00 0.00 4.79
365 367 2.502538 CCCCCAAACATGAGAATTGCAT 59.497 45.455 0.00 0.00 0.00 3.96
410 412 2.504367 CCGGAACTTTGATTCCTGTGT 58.496 47.619 0.00 0.00 45.27 3.72
601 607 2.225491 GCTTCAACATCACTAACCGCAA 59.775 45.455 0.00 0.00 0.00 4.85
606 612 4.699735 TCAACATCACTAACCGCAAATGAT 59.300 37.500 0.00 0.00 0.00 2.45
648 654 3.386726 CCATGGAGAACACTAACCCGATA 59.613 47.826 5.56 0.00 0.00 2.92
651 657 5.779529 TGGAGAACACTAACCCGATATAC 57.220 43.478 0.00 0.00 0.00 1.47
758 769 1.307355 TTGATCGCTCCACGGACGTA 61.307 55.000 0.00 0.00 43.89 3.57
772 783 2.094906 CGGACGTACTCTGGTTTGATCA 60.095 50.000 0.00 0.00 0.00 2.92
811 825 4.812476 CAACGGCGGCGGAGATCA 62.812 66.667 35.05 0.00 0.00 2.92
838 853 1.985895 AGAGGACCCAAACCCTAACTG 59.014 52.381 0.00 0.00 31.84 3.16
855 870 7.533289 CCTAACTGGAGGGAAAAATAACAAA 57.467 36.000 0.00 0.00 38.35 2.83
856 871 8.134202 CCTAACTGGAGGGAAAAATAACAAAT 57.866 34.615 0.00 0.00 38.35 2.32
857 872 8.593679 CCTAACTGGAGGGAAAAATAACAAATT 58.406 33.333 0.00 0.00 38.35 1.82
858 873 9.996554 CTAACTGGAGGGAAAAATAACAAATTT 57.003 29.630 0.00 0.00 0.00 1.82
860 875 9.996554 AACTGGAGGGAAAAATAACAAATTTAG 57.003 29.630 0.00 0.00 0.00 1.85
861 876 9.154632 ACTGGAGGGAAAAATAACAAATTTAGT 57.845 29.630 0.00 0.00 0.00 2.24
862 877 9.996554 CTGGAGGGAAAAATAACAAATTTAGTT 57.003 29.630 9.78 9.78 0.00 2.24
863 878 9.771534 TGGAGGGAAAAATAACAAATTTAGTTG 57.228 29.630 13.08 0.00 34.52 3.16
864 879 8.717821 GGAGGGAAAAATAACAAATTTAGTTGC 58.282 33.333 13.08 0.00 31.29 4.17
865 880 9.489084 GAGGGAAAAATAACAAATTTAGTTGCT 57.511 29.630 13.08 2.52 31.29 3.91
875 890 7.448748 ACAAATTTAGTTGCTAATCGGAAGT 57.551 32.000 0.00 0.00 31.29 3.01
876 891 7.305474 ACAAATTTAGTTGCTAATCGGAAGTG 58.695 34.615 0.00 0.00 31.29 3.16
877 892 6.436843 AATTTAGTTGCTAATCGGAAGTGG 57.563 37.500 0.00 0.00 0.00 4.00
878 893 4.546829 TTAGTTGCTAATCGGAAGTGGT 57.453 40.909 0.00 0.00 0.00 4.16
879 894 5.664294 TTAGTTGCTAATCGGAAGTGGTA 57.336 39.130 0.00 0.00 0.00 3.25
880 895 4.124851 AGTTGCTAATCGGAAGTGGTAG 57.875 45.455 0.00 0.00 0.00 3.18
881 896 3.118738 AGTTGCTAATCGGAAGTGGTAGG 60.119 47.826 0.00 0.00 0.00 3.18
882 897 2.742348 TGCTAATCGGAAGTGGTAGGA 58.258 47.619 0.00 0.00 0.00 2.94
1048 1063 3.307762 GCACTCTGTTCTAGGGTTTCCAT 60.308 47.826 0.00 0.00 38.32 3.41
1130 1145 2.025887 GGTGATGATTCCACTTCCACCT 60.026 50.000 0.00 0.00 35.05 4.00
1147 1162 1.165270 CCTGTCTTCGCCGGAAAATT 58.835 50.000 5.05 0.00 0.00 1.82
1288 1303 1.297689 GCTCACTGCCATGGAGTCA 59.702 57.895 18.40 2.70 35.15 3.41
1292 1307 2.217038 ACTGCCATGGAGTCACCGT 61.217 57.895 18.40 0.00 42.61 4.83
1468 1483 2.046864 CCGCTCCTCCGTGAAGAGA 61.047 63.158 4.33 0.00 35.82 3.10
1473 1488 1.305381 CCTCCGTGAAGAGAGGGGT 60.305 63.158 0.00 0.00 45.08 4.95
1497 1512 0.106318 GGGCTCGACTACCTTCCCTA 60.106 60.000 0.00 0.00 0.00 3.53
1542 1557 4.426313 GGCCGCCCTAACCAAGCT 62.426 66.667 0.00 0.00 0.00 3.74
1579 1594 4.740822 AGCCGCCGCCCATCTTTT 62.741 61.111 0.00 0.00 34.57 2.27
1617 1632 0.249120 CTGAGTACATGAACCCGCCA 59.751 55.000 0.00 0.00 0.00 5.69
1626 1641 1.324740 TGAACCCGCCAGCTATACGT 61.325 55.000 0.00 0.00 0.00 3.57
1649 1664 1.904771 CCTCCTACGCCATGGTTGA 59.095 57.895 14.67 2.36 0.00 3.18
1669 1684 3.523157 TGACTCCCATATTTTGCTCTCCA 59.477 43.478 0.00 0.00 0.00 3.86
1747 1762 2.566824 GGAACCTACGGGTACGACA 58.433 57.895 0.00 0.00 46.67 4.35
1793 1808 5.104402 TGGTGCATGAGATGAATCTTCCTTA 60.104 40.000 0.00 0.00 37.25 2.69
1975 1992 2.103263 CCTATTCTGGGGGAACTTCTCG 59.897 54.545 0.00 0.00 36.70 4.04
2034 2051 2.299993 GATCTGTCGATGCTGAACCA 57.700 50.000 0.00 0.00 0.00 3.67
2046 2063 2.147150 GCTGAACCAGAGTCCAAGTTC 58.853 52.381 9.49 9.49 39.22 3.01
2047 2064 2.485479 GCTGAACCAGAGTCCAAGTTCA 60.485 50.000 15.50 15.50 44.61 3.18
2136 2153 1.691196 AGCAGCAGTGGCAAGTTTAA 58.309 45.000 0.00 0.00 44.61 1.52
2154 2171 6.228258 AGTTTAAAAAGTAGCTGATCGGTCA 58.772 36.000 0.00 0.00 0.00 4.02
2266 2283 5.756918 TCAGCTCTAGTTACACATACCTCT 58.243 41.667 0.00 0.00 0.00 3.69
2527 2544 6.070938 GGTAGGCTTTTCAGAAACTAGACCTA 60.071 42.308 0.00 4.84 0.00 3.08
2532 2549 8.577296 GGCTTTTCAGAAACTAGACCTATTTTT 58.423 33.333 0.00 0.00 0.00 1.94
2935 2953 6.209788 TGAAACAAGTGGTCAAAGTAAACCTT 59.790 34.615 0.00 0.00 36.47 3.50
3024 3043 3.849951 CCGTGGCCTCCGCTGTAT 61.850 66.667 3.32 0.00 34.44 2.29
3184 3208 2.430610 GCAGCTCCCTCATCTCGGT 61.431 63.158 0.00 0.00 0.00 4.69
3238 3262 1.001631 TCCTCTCAAGATCCGCCCA 59.998 57.895 0.00 0.00 0.00 5.36
3255 3279 0.179000 CCATACTCTCCACAGCCCAC 59.821 60.000 0.00 0.00 0.00 4.61
3279 3303 3.702048 CCCGTCCGGCTCCTTTCA 61.702 66.667 0.00 0.00 0.00 2.69
3346 3370 2.672996 GCTTCTCCTTGGGCGCAA 60.673 61.111 16.06 16.06 0.00 4.85
3378 3402 2.203070 GCCATCGCGGATCCTTGT 60.203 61.111 10.75 0.00 36.56 3.16
3379 3403 1.819632 GCCATCGCGGATCCTTGTT 60.820 57.895 10.75 0.00 36.56 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 6.875076 TCTACAGAGTTAAGTTTGATAGGCC 58.125 40.000 7.77 0.00 0.00 5.19
13 14 8.926710 CGTCAAATCTACAGAGTTAAGTTTGAT 58.073 33.333 7.77 0.00 36.90 2.57
63 64 7.391148 GTTTATAAACCTCTGAAGAATGCCA 57.609 36.000 16.14 0.00 32.82 4.92
84 85 0.958822 GTGGGTTCGCATCAAGGTTT 59.041 50.000 0.00 0.00 0.00 3.27
131 132 1.154016 ACATCGAACAGCCGTCTCG 60.154 57.895 0.00 0.15 0.00 4.04
256 258 0.389948 GATGGAGTGACGAAACCGCT 60.390 55.000 0.00 0.00 0.00 5.52
257 259 0.669318 TGATGGAGTGACGAAACCGC 60.669 55.000 0.00 0.00 0.00 5.68
321 323 1.153549 GGAGAGGGTCATGCACGAC 60.154 63.158 3.86 3.86 35.03 4.34
410 412 0.251354 GAGAGCTGCTTGGGACATCA 59.749 55.000 2.53 0.00 39.30 3.07
601 607 2.455565 CCGGGGCCTCTGGATCATT 61.456 63.158 12.53 0.00 44.90 2.57
648 654 1.564348 ACCAAAGGCCCGATCTTGTAT 59.436 47.619 0.00 0.00 0.00 2.29
651 657 1.315257 CCACCAAAGGCCCGATCTTG 61.315 60.000 0.00 0.00 0.00 3.02
734 745 2.990479 GTGGAGCGATCAAGGGGT 59.010 61.111 1.84 0.00 0.00 4.95
758 769 0.036010 CCCGCTGATCAAACCAGAGT 60.036 55.000 0.00 0.00 33.65 3.24
772 783 1.763545 GATCTTTACTTCCCTCCCGCT 59.236 52.381 0.00 0.00 0.00 5.52
811 825 1.460689 TTTGGGTCCTCTCGGTGGT 60.461 57.895 0.00 0.00 0.00 4.16
818 832 1.985895 CAGTTAGGGTTTGGGTCCTCT 59.014 52.381 0.00 0.00 34.75 3.69
838 853 8.717821 GCAACTAAATTTGTTATTTTTCCCTCC 58.282 33.333 0.00 0.00 0.00 4.30
849 864 9.005777 ACTTCCGATTAGCAACTAAATTTGTTA 57.994 29.630 0.00 0.00 29.35 2.41
850 865 7.807907 CACTTCCGATTAGCAACTAAATTTGTT 59.192 33.333 0.00 0.82 29.35 2.83
851 866 7.305474 CACTTCCGATTAGCAACTAAATTTGT 58.695 34.615 0.00 0.00 29.35 2.83
852 867 6.747280 CCACTTCCGATTAGCAACTAAATTTG 59.253 38.462 0.00 0.00 29.35 2.32
853 868 6.433093 ACCACTTCCGATTAGCAACTAAATTT 59.567 34.615 0.00 0.00 29.35 1.82
854 869 5.944007 ACCACTTCCGATTAGCAACTAAATT 59.056 36.000 0.00 0.00 29.35 1.82
855 870 5.497474 ACCACTTCCGATTAGCAACTAAAT 58.503 37.500 0.00 0.00 29.35 1.40
856 871 4.901868 ACCACTTCCGATTAGCAACTAAA 58.098 39.130 0.00 0.00 29.35 1.85
857 872 4.546829 ACCACTTCCGATTAGCAACTAA 57.453 40.909 0.00 0.00 0.00 2.24
858 873 4.098960 CCTACCACTTCCGATTAGCAACTA 59.901 45.833 0.00 0.00 0.00 2.24
859 874 3.118738 CCTACCACTTCCGATTAGCAACT 60.119 47.826 0.00 0.00 0.00 3.16
860 875 3.118884 TCCTACCACTTCCGATTAGCAAC 60.119 47.826 0.00 0.00 0.00 4.17
861 876 3.101437 TCCTACCACTTCCGATTAGCAA 58.899 45.455 0.00 0.00 0.00 3.91
862 877 2.742348 TCCTACCACTTCCGATTAGCA 58.258 47.619 0.00 0.00 0.00 3.49
863 878 4.523558 ACTATCCTACCACTTCCGATTAGC 59.476 45.833 0.00 0.00 0.00 3.09
864 879 6.448006 CAACTATCCTACCACTTCCGATTAG 58.552 44.000 0.00 0.00 0.00 1.73
865 880 5.221382 GCAACTATCCTACCACTTCCGATTA 60.221 44.000 0.00 0.00 0.00 1.75
866 881 4.443034 GCAACTATCCTACCACTTCCGATT 60.443 45.833 0.00 0.00 0.00 3.34
867 882 3.069729 GCAACTATCCTACCACTTCCGAT 59.930 47.826 0.00 0.00 0.00 4.18
868 883 2.429610 GCAACTATCCTACCACTTCCGA 59.570 50.000 0.00 0.00 0.00 4.55
869 884 2.431057 AGCAACTATCCTACCACTTCCG 59.569 50.000 0.00 0.00 0.00 4.30
870 885 3.707102 AGAGCAACTATCCTACCACTTCC 59.293 47.826 0.00 0.00 0.00 3.46
871 886 4.498345 CGAGAGCAACTATCCTACCACTTC 60.498 50.000 0.00 0.00 0.00 3.01
872 887 3.381908 CGAGAGCAACTATCCTACCACTT 59.618 47.826 0.00 0.00 0.00 3.16
873 888 2.952978 CGAGAGCAACTATCCTACCACT 59.047 50.000 0.00 0.00 0.00 4.00
874 889 2.688958 ACGAGAGCAACTATCCTACCAC 59.311 50.000 0.00 0.00 0.00 4.16
875 890 2.950309 GACGAGAGCAACTATCCTACCA 59.050 50.000 0.00 0.00 0.00 3.25
876 891 2.950309 TGACGAGAGCAACTATCCTACC 59.050 50.000 0.00 0.00 0.00 3.18
877 892 3.377485 TGTGACGAGAGCAACTATCCTAC 59.623 47.826 0.00 0.00 0.00 3.18
878 893 3.617284 TGTGACGAGAGCAACTATCCTA 58.383 45.455 0.00 0.00 0.00 2.94
879 894 2.447443 TGTGACGAGAGCAACTATCCT 58.553 47.619 0.00 0.00 0.00 3.24
880 895 2.941453 TGTGACGAGAGCAACTATCC 57.059 50.000 0.00 0.00 0.00 2.59
881 896 3.119291 CCATGTGACGAGAGCAACTATC 58.881 50.000 0.00 0.00 0.00 2.08
882 897 2.497675 ACCATGTGACGAGAGCAACTAT 59.502 45.455 0.00 0.00 0.00 2.12
1012 1027 1.495584 GAGTGCGTGCCGTCTTTTCA 61.496 55.000 0.00 0.00 0.00 2.69
1130 1145 1.600023 ACAATTTTCCGGCGAAGACA 58.400 45.000 9.30 0.00 27.25 3.41
1147 1162 1.418637 ACCGGCTTTTCTGGAACTACA 59.581 47.619 0.00 0.00 44.37 2.74
1200 1215 2.567169 CCAACACTGAGGATGGAGTACA 59.433 50.000 0.00 0.00 34.82 2.90
1226 1241 2.280186 CGGGATCTTAGGCGCCAC 60.280 66.667 31.54 11.86 0.00 5.01
1271 1286 0.392193 GGTGACTCCATGGCAGTGAG 60.392 60.000 18.06 12.90 31.98 3.51
1292 1307 0.689745 CCAACGATCCAGGACCCCTA 60.690 60.000 0.00 0.00 29.64 3.53
1468 1483 4.414956 TCGAGCCCCATCACCCCT 62.415 66.667 0.00 0.00 0.00 4.79
1473 1488 0.325296 AAGGTAGTCGAGCCCCATCA 60.325 55.000 0.00 0.00 0.00 3.07
1497 1512 4.156190 TCGAAGTCTTAATCTGCTCGAACT 59.844 41.667 0.00 0.00 0.00 3.01
1542 1557 2.231478 CTCGAGTTCTAGGCAAACCTCA 59.769 50.000 3.62 0.00 46.34 3.86
1617 1632 1.486211 AGGAGGCAACACGTATAGCT 58.514 50.000 0.00 0.00 41.41 3.32
1649 1664 4.467769 CATGGAGAGCAAAATATGGGAGT 58.532 43.478 0.00 0.00 0.00 3.85
1669 1684 1.888512 GGTCACATTGTCCAGTTGCAT 59.111 47.619 0.00 0.00 0.00 3.96
1736 1751 0.815734 CTTCTCCATGTCGTACCCGT 59.184 55.000 0.00 0.00 35.01 5.28
1747 1762 1.912043 CTCCCACACCTTCTTCTCCAT 59.088 52.381 0.00 0.00 0.00 3.41
2034 2051 2.092429 TGGTTTGCTGAACTTGGACTCT 60.092 45.455 4.05 0.00 38.35 3.24
2046 2063 4.478699 CATGTACATCACTTGGTTTGCTG 58.521 43.478 5.07 0.00 0.00 4.41
2047 2064 3.507233 CCATGTACATCACTTGGTTTGCT 59.493 43.478 5.07 0.00 44.03 3.91
2125 2142 6.567701 CGATCAGCTACTTTTTAAACTTGCCA 60.568 38.462 0.00 0.00 0.00 4.92
2136 2153 4.184629 GACATGACCGATCAGCTACTTTT 58.815 43.478 0.00 0.00 38.57 2.27
2154 2171 3.294214 GAAAGGATGAGCCAATGGACAT 58.706 45.455 2.05 7.82 40.02 3.06
2340 2357 6.055588 GCAGTGTGTTACTATAATGGGTCAT 58.944 40.000 0.00 0.00 37.60 3.06
2532 2549 2.083774 GCATACACAAGCTGCCTACAA 58.916 47.619 0.00 0.00 0.00 2.41
3024 3043 7.775093 GGAGGCAAAAGCCATCATATATACATA 59.225 37.037 9.42 0.00 0.00 2.29
3073 3093 6.126768 ACCTAAGCTCTAATACCATGCAAGAA 60.127 38.462 0.00 0.00 0.00 2.52
3074 3094 5.366768 ACCTAAGCTCTAATACCATGCAAGA 59.633 40.000 0.00 0.00 0.00 3.02
3148 3169 1.367471 CGACAGGCAAGGAGACACA 59.633 57.895 0.00 0.00 0.00 3.72
3184 3208 2.151202 GGATTGAAGGAACGACAGCAA 58.849 47.619 0.00 0.00 0.00 3.91
3238 3262 0.983378 GGGTGGGCTGTGGAGAGTAT 60.983 60.000 0.00 0.00 0.00 2.12
3290 3314 3.731728 GGCATCCTGGGTGAGGCA 61.732 66.667 12.09 0.00 43.51 4.75
3304 3328 2.045340 GGGCTAAAAGCGGAGGCA 60.045 61.111 6.21 0.00 43.62 4.75
3360 3384 2.203056 CAAGGATCCGCGATGGCA 60.203 61.111 8.23 0.00 39.92 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.