AutoCloner

Multiple sequence alignment - TraesCS6A01G212500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G212500	chr6A	100.000	3413	0	0	1	3413	385750936	385747524	0.000000e+00	6303.0
1	TraesCS6A01G212500	chr6A	95.833	2520	102	1	894	3413	385824039	385821523	0.000000e+00	4069.0
2	TraesCS6A01G212500	chr6A	82.437	632	73	20	54	662	386316436	386315820	5.050000e-143	518.0
3	TraesCS6A01G212500	chr6A	93.878	245	10	2	659	903	386289062	386288823	6.960000e-97	364.0
4	TraesCS6A01G212500	chr6A	91.071	224	18	2	2	225	386316532	386316311	5.540000e-78	302.0
5	TraesCS6A01G212500	chr6B	96.311	2494	87	4	891	3382	426826633	426829123	0.000000e+00	4091.0
6	TraesCS6A01G212500	chr6B	97.192	2208	57	4	894	3099	426736094	426738298	0.000000e+00	3729.0
7	TraesCS6A01G212500	chr6B	96.051	1899	67	3	1515	3413	426744196	426746086	0.000000e+00	3085.0
8	TraesCS6A01G212500	chr6B	87.673	868	69	20	54	903	426457032	426457879	0.000000e+00	976.0
9	TraesCS6A01G212500	chr6B	86.560	811	72	19	54	847	426818037	426818827	0.000000e+00	859.0
10	TraesCS6A01G212500	chr6B	85.395	671	61	20	54	705	426456084	426456736	0.000000e+00	662.0
11	TraesCS6A01G212500	chr6B	90.179	224	20	2	2	225	426456936	426457157	1.200000e-74	291.0
12	TraesCS6A01G212500	chr6B	89.286	224	22	2	2	225	426455988	426456209	2.590000e-71	279.0
13	TraesCS6A01G212500	chr6B	93.605	172	10	1	54	225	426817993	426818163	4.370000e-64	255.0
14	TraesCS6A01G212500	chr6B	96.622	148	1	2	700	847	426818852	426818995	3.400000e-60	243.0
15	TraesCS6A01G212500	chr7D	83.655	673	70	16	54	697	227560586	227559925	6.300000e-167	597.0
16	TraesCS6A01G212500	chr7D	93.711	159	9	1	67	225	227560617	227560460	1.580000e-58	237.0
17	TraesCS6A01G212500	chr7D	86.111	180	21	4	2959	3134	37029954	37029775	1.250000e-44	191.0
18	TraesCS6A01G212500	chr1D	83.033	666	76	15	54	694	373416463	373417116	1.370000e-158	569.0
19	TraesCS6A01G212500	chr1D	91.860	172	13	1	54	225	373416419	373416589	4.400000e-59	239.0
20	TraesCS6A01G212500	chr7A	82.493	674	80	18	54	702	237526954	237526294	1.070000e-154	556.0
21	TraesCS6A01G212500	chr7A	87.892	223	25	2	3	225	237527048	237526828	9.390000e-66	261.0
22	TraesCS6A01G212500	chr3A	82.032	679	86	16	54	708	47062284	47061618	2.320000e-151	545.0
23	TraesCS6A01G212500	chr2B	80.694	663	91	16	61	699	20030837	20031486	6.620000e-132	481.0
24	TraesCS6A01G212500	chr1B	90.541	222	20	1	4	225	452366598	452366378	3.330000e-75	292.0
25	TraesCS6A01G212500	chr3D	85.145	276	36	4	2962	3234	323276891	323277164	9.330000e-71	278.0
26	TraesCS6A01G212500	chr3D	86.667	180	19	5	2959	3134	475775688	475775510	9.660000e-46	195.0
27	TraesCS6A01G212500	chr5D	91.860	172	13	1	54	225	360979047	360979217	4.400000e-59	239.0
28	TraesCS6A01G212500	chr3B	86.364	176	18	5	2962	3135	559753796	559753625	1.620000e-43	187.0
29	TraesCS6A01G212500	chr3B	84.066	182	19	7	2957	3134	405421919	405421744	2.110000e-37	167.0
30	TraesCS6A01G212500	chr4D	93.617	47	3	0	2	48	503366444	503366398	1.700000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G212500	chr6A	385747524	385750936	3412	True	6303.000000	6303	100.000000	1	3413	1	chr6A.!!$R1	3412
1	TraesCS6A01G212500	chr6A	385821523	385824039	2516	True	4069.000000	4069	95.833000	894	3413	1	chr6A.!!$R2	2519
2	TraesCS6A01G212500	chr6A	386315820	386316532	712	True	410.000000	518	86.754000	2	662	2	chr6A.!!$R4	660
3	TraesCS6A01G212500	chr6B	426826633	426829123	2490	False	4091.000000	4091	96.311000	891	3382	1	chr6B.!!$F3	2491
4	TraesCS6A01G212500	chr6B	426736094	426738298	2204	False	3729.000000	3729	97.192000	894	3099	1	chr6B.!!$F1	2205
5	TraesCS6A01G212500	chr6B	426744196	426746086	1890	False	3085.000000	3085	96.051000	1515	3413	1	chr6B.!!$F2	1898
6	TraesCS6A01G212500	chr6B	426455988	426457879	1891	False	552.000000	976	88.133250	2	903	4	chr6B.!!$F4	901
7	TraesCS6A01G212500	chr6B	426817993	426818995	1002	False	452.333333	859	92.262333	54	847	3	chr6B.!!$F5	793
8	TraesCS6A01G212500	chr7D	227559925	227560617	692	True	417.000000	597	88.683000	54	697	2	chr7D.!!$R2	643
9	TraesCS6A01G212500	chr1D	373416419	373417116	697	False	404.000000	569	87.446500	54	694	2	chr1D.!!$F1	640
10	TraesCS6A01G212500	chr7A	237526294	237527048	754	True	408.500000	556	85.192500	3	702	2	chr7A.!!$R1	699
11	TraesCS6A01G212500	chr3A	47061618	47062284	666	True	545.000000	545	82.032000	54	708	1	chr3A.!!$R1	654
12	TraesCS6A01G212500	chr2B	20030837	20031486	649	False	481.000000	481	80.694000	61	699	1	chr2B.!!$F1	638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
74	119	0.251832	TGCGGAACCTCCTCTTCTCT	60.252	55.0	0.0	0.0	33.30	3.10	F
1687	2752	0.040157	CGTGCAACTGGACAATGTGG	60.040	55.0	0.0	0.0	36.05	4.17	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1737	2802	0.250858	TCTTCTCCACGTCGTACCCA	60.251	55.0	0.00	0.0	0.00	4.51	R
3289	4358	1.938585	CCTCCTAGGTGAGGTGAACA	58.061	55.0	12.54	0.0	45.76	3.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
67	112	1.187087	CTCTAGTTGCGGAACCTCCT	58.813	55.000	16.78	0.00	33.30	3.69
68	113	1.135333	CTCTAGTTGCGGAACCTCCTC	59.865	57.143	16.78	0.00	33.30	3.71
69	114	1.187087	CTAGTTGCGGAACCTCCTCT	58.813	55.000	16.78	0.00	33.30	3.69
70	115	1.550976	CTAGTTGCGGAACCTCCTCTT	59.449	52.381	16.78	0.00	33.30	2.85
71	116	0.321996	AGTTGCGGAACCTCCTCTTC	59.678	55.000	16.78	0.00	33.30	2.87
72	117	0.321996	GTTGCGGAACCTCCTCTTCT	59.678	55.000	8.86	0.00	33.30	2.85
73	118	0.608640	TTGCGGAACCTCCTCTTCTC	59.391	55.000	0.00	0.00	33.30	2.87
74	119	0.251832	TGCGGAACCTCCTCTTCTCT	60.252	55.000	0.00	0.00	33.30	3.10
75	120	1.005569	TGCGGAACCTCCTCTTCTCTA	59.994	52.381	0.00	0.00	33.30	2.43
76	121	2.100989	GCGGAACCTCCTCTTCTCTAA	58.899	52.381	0.00	0.00	33.30	2.10
77	122	2.696187	GCGGAACCTCCTCTTCTCTAAT	59.304	50.000	0.00	0.00	33.30	1.73
78	123	3.133183	GCGGAACCTCCTCTTCTCTAATT	59.867	47.826	0.00	0.00	33.30	1.40
79	124	4.383226	GCGGAACCTCCTCTTCTCTAATTT	60.383	45.833	0.00	0.00	33.30	1.82
80	125	5.735766	CGGAACCTCCTCTTCTCTAATTTT	58.264	41.667	0.00	0.00	33.30	1.82
81	126	5.813157	CGGAACCTCCTCTTCTCTAATTTTC	59.187	44.000	0.00	0.00	33.30	2.29
82	127	6.351456	CGGAACCTCCTCTTCTCTAATTTTCT	60.351	42.308	0.00	0.00	33.30	2.52
83	128	6.821160	GGAACCTCCTCTTCTCTAATTTTCTG	59.179	42.308	0.00	0.00	32.53	3.02
84	129	5.739959	ACCTCCTCTTCTCTAATTTTCTGC	58.260	41.667	0.00	0.00	0.00	4.26
85	130	5.249393	ACCTCCTCTTCTCTAATTTTCTGCA	59.751	40.000	0.00	0.00	0.00	4.41
86	131	6.176183	CCTCCTCTTCTCTAATTTTCTGCAA	58.824	40.000	0.00	0.00	0.00	4.08
87	132	6.093357	CCTCCTCTTCTCTAATTTTCTGCAAC	59.907	42.308	0.00	0.00	0.00	4.17
88	133	6.533730	TCCTCTTCTCTAATTTTCTGCAACA	58.466	36.000	0.00	0.00	0.00	3.33
89	134	6.998074	TCCTCTTCTCTAATTTTCTGCAACAA	59.002	34.615	0.00	0.00	0.00	2.83
90	135	7.173907	TCCTCTTCTCTAATTTTCTGCAACAAG	59.826	37.037	0.00	0.00	0.00	3.16
91	136	7.173907	CCTCTTCTCTAATTTTCTGCAACAAGA	59.826	37.037	0.00	0.00	0.00	3.02
92	137	8.092521	TCTTCTCTAATTTTCTGCAACAAGAG	57.907	34.615	0.00	0.00	0.00	2.85
93	138	6.246420	TCTCTAATTTTCTGCAACAAGAGC	57.754	37.500	0.00	0.00	31.43	4.09
94	139	6.000219	TCTCTAATTTTCTGCAACAAGAGCT	59.000	36.000	0.00	0.00	31.43	4.09
95	140	6.488006	TCTCTAATTTTCTGCAACAAGAGCTT	59.512	34.615	0.00	0.00	31.43	3.74
96	141	7.013655	TCTCTAATTTTCTGCAACAAGAGCTTT	59.986	33.333	0.00	0.00	31.43	3.51
97	142	5.978934	AATTTTCTGCAACAAGAGCTTTG	57.021	34.783	0.00	0.00	0.00	2.77
98	143	4.454728	TTTTCTGCAACAAGAGCTTTGT	57.545	36.364	8.03	8.03	0.00	2.83
99	144	4.454728	TTTCTGCAACAAGAGCTTTGTT	57.545	36.364	16.38	16.38	42.75	2.83
105	150	3.502191	AACAAGAGCTTTGTTGCGAAA	57.498	38.095	19.48	0.00	40.70	3.46
106	151	3.502191	ACAAGAGCTTTGTTGCGAAAA	57.498	38.095	8.03	0.00	38.13	2.29
107	152	3.179048	ACAAGAGCTTTGTTGCGAAAAC	58.821	40.909	8.03	0.00	38.13	2.43
108	153	3.119495	ACAAGAGCTTTGTTGCGAAAACT	60.119	39.130	8.03	0.00	38.13	2.66
109	154	3.340337	AGAGCTTTGTTGCGAAAACTC	57.660	42.857	0.00	0.00	38.13	3.01
110	155	2.033424	AGAGCTTTGTTGCGAAAACTCC	59.967	45.455	0.00	0.00	38.13	3.85
111	156	2.024414	AGCTTTGTTGCGAAAACTCCT	58.976	42.857	0.00	0.00	38.13	3.69
225	270	0.671781	ATCTCATGCCGCGCCTAATC	60.672	55.000	0.00	0.00	0.00	1.75
226	271	2.661537	TCATGCCGCGCCTAATCG	60.662	61.111	0.00	0.00	0.00	3.34
241	335	3.376234	CCTAATCGGTCGTGTAGTCTTCA	59.624	47.826	0.00	0.00	0.00	3.02
327	422	3.161866	TGTGATGTGGCTGTGTCTAGTA	58.838	45.455	0.00	0.00	0.00	1.82
415	522	4.477975	GCTGGAGTCGACGTCGGG	62.478	72.222	35.05	19.05	40.29	5.14
466	573	2.136791	CTGGATATGCCCCAGTCGT	58.863	57.895	0.00	0.00	44.66	4.34
638	1703	3.562973	GTCTGATCAACATGCGATCCAAT	59.437	43.478	18.32	0.00	38.83	3.16
678	1743	4.538283	CGCGCGAGATCTGTCGGT	62.538	66.667	28.94	0.00	40.44	4.69
682	1747	1.134530	CGCGAGATCTGTCGGTTGAC	61.135	60.000	0.00	0.00	45.71	3.18
694	1759	0.515564	CGGTTGACGGTAGGCTTTTG	59.484	55.000	0.00	0.00	39.42	2.44
836	1901	3.885724	AGAAAATTATTTGTGGGCCGG	57.114	42.857	0.00	0.00	0.00	6.13
940	2005	1.164041	CCAAACGAGGCCGAACAAGT	61.164	55.000	0.00	0.00	39.50	3.16
1140	2205	3.234630	CTTCCACCCGTCTTCGCCA	62.235	63.158	0.00	0.00	35.54	5.69
1182	2247	1.144057	CGGTCTATCTGGTGGTGGC	59.856	63.158	0.00	0.00	0.00	5.01
1243	2308	0.179020	CAATGGCGCCTAAGATCCCA	60.179	55.000	29.70	3.35	0.00	4.37
1252	2317	1.561542	CCTAAGATCCCACTGCACCTT	59.438	52.381	0.00	0.00	0.00	3.50
1311	2376	1.229529	AGGGGTCCTGGATCGTTGT	60.230	57.895	0.00	0.00	29.57	3.32
1428	2493	2.107041	ATCCTGTTTCCACACCGCGA	62.107	55.000	8.23	0.00	0.00	5.87
1501	2566	1.900486	CTCGACTACCTTCCCTGGTTT	59.100	52.381	0.00	0.00	41.22	3.27
1610	2675	1.068083	CGCCGCCTGAGTACATGAT	59.932	57.895	0.00	0.00	0.00	2.45
1614	2679	0.752658	CGCCTGAGTACATGATCCCA	59.247	55.000	0.00	0.00	0.00	4.37
1687	2752	0.040157	CGTGCAACTGGACAATGTGG	60.040	55.000	0.00	0.00	36.05	4.17
1865	2931	2.017559	GAGAGGGACGGCGCTTATGT	62.018	60.000	10.14	0.34	37.44	2.29
1939	3005	1.271856	TATTGAGGTTCCGCTGGTGA	58.728	50.000	0.00	0.00	0.00	4.02
2049	3116	1.057851	AACCGGAGTCCAAGTTGGGA	61.058	55.000	21.85	6.03	38.32	4.37
2545	3612	3.072476	ACCTGTTTTCTGTAGGCAGCTTA	59.928	43.478	0.00	0.00	42.29	3.09
2771	3838	9.217278	GCATCTCAGATCACAATACTTAATCAT	57.783	33.333	0.00	0.00	0.00	2.45
3188	4257	2.841988	AGCTCCCTCATCTCGGCC	60.842	66.667	0.00	0.00	0.00	6.13
3189	4258	3.157252	GCTCCCTCATCTCGGCCA	61.157	66.667	2.24	0.00	0.00	5.36
3190	4259	2.515071	GCTCCCTCATCTCGGCCAT	61.515	63.158	2.24	0.00	0.00	4.40
3263	4332	3.324930	CTCCACAGCCCAGCCTCA	61.325	66.667	0.00	0.00	0.00	3.86
3289	4358	2.592308	GGCTCCTTCCGCCATCTT	59.408	61.111	0.00	0.00	46.77	2.40
3294	4363	0.690192	TCCTTCCGCCATCTTGTTCA	59.310	50.000	0.00	0.00	0.00	3.18
3302	4371	1.271597	GCCATCTTGTTCACCTCACCT	60.272	52.381	0.00	0.00	0.00	4.00
3353	4422	4.020617	CTCCTTGGGCGCACAGGA	62.021	66.667	25.01	24.15	0.00	3.86
3358	4427	3.203086	TTGGGCGCACAGGAATCCA	62.203	57.895	14.28	2.41	0.00	3.41
3392	4461	0.827368	GATCCCTGGCTCTCTTCGTT	59.173	55.000	0.00	0.00	0.00	3.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
59	104	6.315144	GCAGAAAATTAGAGAAGAGGAGGTTC	59.685	42.308	0.00	0.00	0.00	3.62
67	112	7.308229	GCTCTTGTTGCAGAAAATTAGAGAAGA	60.308	37.037	0.00	0.00	31.76	2.87
68	113	6.800892	GCTCTTGTTGCAGAAAATTAGAGAAG	59.199	38.462	0.00	0.00	31.76	2.85
69	114	6.488006	AGCTCTTGTTGCAGAAAATTAGAGAA	59.512	34.615	0.00	0.00	31.76	2.87
70	115	6.000219	AGCTCTTGTTGCAGAAAATTAGAGA	59.000	36.000	0.00	0.00	31.76	3.10
71	116	6.251655	AGCTCTTGTTGCAGAAAATTAGAG	57.748	37.500	0.00	0.00	0.00	2.43
72	117	6.639632	AAGCTCTTGTTGCAGAAAATTAGA	57.360	33.333	0.00	0.00	0.00	2.10
73	118	6.698766	ACAAAGCTCTTGTTGCAGAAAATTAG	59.301	34.615	8.03	0.00	0.00	1.73
74	119	6.572519	ACAAAGCTCTTGTTGCAGAAAATTA	58.427	32.000	8.03	0.00	0.00	1.40
75	120	5.422145	ACAAAGCTCTTGTTGCAGAAAATT	58.578	33.333	8.03	0.00	0.00	1.82
76	121	5.014808	ACAAAGCTCTTGTTGCAGAAAAT	57.985	34.783	8.03	0.00	0.00	1.82
77	122	4.454728	ACAAAGCTCTTGTTGCAGAAAA	57.545	36.364	8.03	0.00	0.00	2.29
78	123	4.454728	AACAAAGCTCTTGTTGCAGAAA	57.545	36.364	19.48	0.00	40.70	2.52
85	130	3.502191	TTTCGCAACAAAGCTCTTGTT	57.498	38.095	16.38	16.38	42.75	2.83
86	131	3.119495	AGTTTTCGCAACAAAGCTCTTGT	60.119	39.130	8.03	8.03	0.00	3.16
87	132	3.438360	AGTTTTCGCAACAAAGCTCTTG	58.562	40.909	6.98	6.98	0.00	3.02
88	133	3.489229	GGAGTTTTCGCAACAAAGCTCTT	60.489	43.478	13.04	0.00	41.16	2.85
89	134	2.033424	GGAGTTTTCGCAACAAAGCTCT	59.967	45.455	13.04	0.00	41.16	4.09
90	135	2.033424	AGGAGTTTTCGCAACAAAGCTC	59.967	45.455	7.65	7.65	40.85	4.09
91	136	2.024414	AGGAGTTTTCGCAACAAAGCT	58.976	42.857	0.86	0.00	30.20	3.74
92	137	2.492019	AGGAGTTTTCGCAACAAAGC	57.508	45.000	0.86	0.00	0.00	3.51
93	138	5.778161	AAAAAGGAGTTTTCGCAACAAAG	57.222	34.783	0.86	0.00	34.11	2.77
94	139	5.771602	GAAAAAGGAGTTTTCGCAACAAA	57.228	34.783	0.86	0.00	44.21	2.83
109	154	9.899226	CCTGTTGTAGAAAATTAGAGAAAAAGG	57.101	33.333	0.00	0.00	0.00	3.11
225	270	1.654105	GCAATGAAGACTACACGACCG	59.346	52.381	0.00	0.00	0.00	4.79
226	271	2.000447	GGCAATGAAGACTACACGACC	59.000	52.381	0.00	0.00	0.00	4.79
275	369	0.738389	CCACGCACACTCCAAGTTTT	59.262	50.000	0.00	0.00	0.00	2.43
444	551	1.598962	CTGGGGCATATCCAGCACG	60.599	63.158	0.00	0.00	44.29	5.34
484	591	2.938798	TGGATTTGGGAGGGCGGT	60.939	61.111	0.00	0.00	0.00	5.68
638	1703	1.056125	ATCCATCGGCTCCATGTCCA	61.056	55.000	0.00	0.00	0.00	4.02
672	1737	1.466025	AAGCCTACCGTCAACCGACA	61.466	55.000	0.00	0.00	42.74	4.35
678	1743	0.109723	AGGCAAAAGCCTACCGTCAA	59.890	50.000	7.34	0.00	38.61	3.18
682	1747	5.790593	TCTTATATAGGCAAAAGCCTACCG	58.209	41.667	17.65	5.89	44.15	4.02
836	1901	1.327764	GCACGTTACAGGCTATTCTGC	59.672	52.381	0.00	0.00	38.26	4.26
868	1933	4.899898	AACCCTAGGCAATCCCTATTTT	57.100	40.909	2.05	0.00	45.11	1.82
935	2000	5.411669	GGGATTTGTAGACGAAATCACTTGT	59.588	40.000	0.00	0.00	39.28	3.16
940	2005	6.624861	GCAATTGGGATTTGTAGACGAAATCA	60.625	38.462	7.72	1.84	40.26	2.57
1097	2162	0.617535	TCATCACCATCCTCCACGGT	60.618	55.000	0.00	0.00	0.00	4.83
1099	2164	2.487934	GAATCATCACCATCCTCCACG	58.512	52.381	0.00	0.00	0.00	4.94
1101	2166	2.173356	GTGGAATCATCACCATCCTCCA	59.827	50.000	0.00	0.00	38.48	3.86
1140	2205	5.181433	GGCTTTTCTGGAACTACGATTTTCT	59.819	40.000	0.00	0.00	0.00	2.52
1243	2308	1.966451	GCGTTGGCTAAGGTGCAGT	60.966	57.895	4.39	0.00	35.83	4.40
1415	2480	2.280524	CTGGTCGCGGTGTGGAAA	60.281	61.111	6.13	0.00	0.00	3.13
1501	2566	4.017126	TCCTCGAAGTCTTAATCTGCTCA	58.983	43.478	0.00	0.00	0.00	4.26
1593	2658	0.601311	GGATCATGTACTCAGGCGGC	60.601	60.000	0.00	0.00	0.00	6.53
1610	2675	3.598715	CGCGTATAGCCGGTGGGA	61.599	66.667	1.90	0.00	44.76	4.37
1614	2679	2.584143	GCAACGCGTATAGCCGGT	60.584	61.111	14.46	0.00	44.76	5.28
1703	2768	5.192927	TGTATTTCCTGTATTTCCTGGCAG	58.807	41.667	7.75	7.75	0.00	4.85
1737	2802	0.250858	TCTTCTCCACGTCGTACCCA	60.251	55.000	0.00	0.00	0.00	4.51
1814	2880	1.137697	AAGAAAGAGTTGGTCCCCGT	58.862	50.000	0.00	0.00	0.00	5.28
1818	2884	1.248486	GGGCAAGAAAGAGTTGGTCC	58.752	55.000	0.00	0.00	0.00	4.46
1865	2931	3.697542	ACCGACATGCATGTAGTACACTA	59.302	43.478	31.45	0.00	41.95	2.74
1951	3017	4.761163	TTCCCCCAGAACAGGTCA	57.239	55.556	0.00	0.00	0.00	4.02
2288	3355	1.344438	GACGGGATGAGGATACATGCA	59.656	52.381	0.00	0.00	39.70	3.96
2545	3612	8.491331	ACAAAAGAAACAAAAACTGCATACAT	57.509	26.923	0.00	0.00	0.00	2.29
2771	3838	5.836024	ACACAAAGGGATTGGTAGTTCTA	57.164	39.130	0.00	0.00	43.66	2.10
2966	4034	6.738453	GCCAAAGGCCACCATAAATATAACTG	60.738	42.308	5.01	0.00	44.06	3.16
2994	4062	2.703798	CCACGGGCCAGAATGCAAG	61.704	63.158	10.86	0.00	31.97	4.01
3113	4182	5.455754	GAGGATCAAGCACAAGTTGCACC	62.456	52.174	1.81	0.00	45.28	5.01
3188	4257	5.419542	TCTAGGATTGAAGGAACGACAATG	58.580	41.667	0.00	0.00	38.48	2.82
3189	4258	5.677319	TCTAGGATTGAAGGAACGACAAT	57.323	39.130	0.00	0.00	40.17	2.71
3190	4259	5.661458	GATCTAGGATTGAAGGAACGACAA	58.339	41.667	0.00	0.00	33.87	3.18
3289	4358	1.938585	CCTCCTAGGTGAGGTGAACA	58.061	55.000	12.54	0.00	45.76	3.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.