Multiple sequence alignment - TraesCS6A01G211800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G211800 chr6A 100.000 3020 0 0 1 3020 384874113 384877132 0.000000e+00 5578.0
1 TraesCS6A01G211800 chr4B 96.917 2076 49 5 897 2965 65596747 65594680 0.000000e+00 3465.0
2 TraesCS6A01G211800 chr4B 94.536 183 10 0 239 421 65597494 65597312 1.770000e-72 283.0
3 TraesCS6A01G211800 chr4B 89.674 184 10 1 653 836 65597292 65597118 3.030000e-55 226.0
4 TraesCS6A01G211800 chr2D 95.056 1881 62 5 1146 3020 36664724 36662869 0.000000e+00 2929.0
5 TraesCS6A01G211800 chr2D 96.992 133 4 0 1019 1151 36664968 36664836 1.090000e-54 224.0
6 TraesCS6A01G211800 chr3A 90.095 1686 133 17 1365 3020 127086859 127085178 0.000000e+00 2158.0
7 TraesCS6A01G211800 chr3A 90.131 1226 98 8 1813 3015 359362900 359364125 0.000000e+00 1572.0
8 TraesCS6A01G211800 chr3A 92.025 326 24 2 1365 1689 359362184 359362508 9.870000e-125 457.0
9 TraesCS6A01G211800 chr3A 89.407 236 24 1 420 654 584013747 584013512 2.280000e-76 296.0
10 TraesCS6A01G211800 chr3A 78.278 511 69 27 662 1151 359361133 359361622 1.060000e-74 291.0
11 TraesCS6A01G211800 chr3A 86.977 215 18 3 1156 1360 359361759 359361973 1.810000e-57 233.0
12 TraesCS6A01G211800 chr3A 89.247 186 17 2 239 421 127087980 127087795 2.340000e-56 230.0
13 TraesCS6A01G211800 chr3A 89.189 185 16 2 240 421 64084216 64084399 8.420000e-56 228.0
14 TraesCS6A01G211800 chr3A 91.946 149 8 2 234 378 359360967 359361115 3.950000e-49 206.0
15 TraesCS6A01G211800 chr3A 84.393 173 16 6 662 834 64084435 64084596 3.120000e-35 159.0
16 TraesCS6A01G211800 chr3A 85.000 120 17 1 239 358 30187314 30187196 1.470000e-23 121.0
17 TraesCS6A01G211800 chr3A 93.878 49 3 0 1934 1982 505225674 505225626 1.160000e-09 75.0
18 TraesCS6A01G211800 chr2A 90.844 1256 91 9 1789 3020 723641577 723640322 0.000000e+00 1661.0
19 TraesCS6A01G211800 chr2A 92.344 418 27 5 1365 1778 723642366 723641950 9.330000e-165 590.0
20 TraesCS6A01G211800 chr2A 91.200 250 15 1 2409 2651 765403734 765403983 1.740000e-87 333.0
21 TraesCS6A01G211800 chr2A 86.555 238 29 3 419 654 379152244 379152480 2.990000e-65 259.0
22 TraesCS6A01G211800 chr2A 87.556 225 17 3 1147 1360 723642801 723642577 1.800000e-62 250.0
23 TraesCS6A01G211800 chr2A 91.525 177 11 2 2150 2323 765403560 765403735 1.080000e-59 241.0
24 TraesCS6A01G211800 chr7D 89.422 917 70 8 2126 3015 76782122 76781206 0.000000e+00 1131.0
25 TraesCS6A01G211800 chr5D 89.140 709 52 11 1146 1833 66297608 66296904 0.000000e+00 859.0
26 TraesCS6A01G211800 chr5D 92.123 584 34 9 1863 2440 66296907 66296330 0.000000e+00 813.0
27 TraesCS6A01G211800 chr5D 92.308 351 25 2 2540 2889 66296300 66295951 5.810000e-137 497.0
28 TraesCS6A01G211800 chr5D 86.517 445 44 8 720 1151 66298156 66297715 2.720000e-130 475.0
29 TraesCS6A01G211800 chr5D 92.797 236 8 8 420 654 536685707 536685480 1.740000e-87 333.0
30 TraesCS6A01G211800 chr5D 93.023 86 6 0 2935 3020 66295950 66295865 3.160000e-25 126.0
31 TraesCS6A01G211800 chr6D 95.339 236 10 1 420 654 49450741 49450506 1.020000e-99 374.0
32 TraesCS6A01G211800 chr6D 92.166 217 8 2 22 230 271126357 271126142 6.330000e-77 298.0
33 TraesCS6A01G211800 chr2B 94.068 236 13 1 420 654 733461339 733461574 1.030000e-94 357.0
34 TraesCS6A01G211800 chr2B 93.220 236 14 2 420 654 782184825 782184591 2.230000e-91 346.0
35 TraesCS6A01G211800 chr2B 91.139 237 18 3 419 654 92593474 92593240 4.860000e-83 318.0
36 TraesCS6A01G211800 chr3D 93.671 237 12 3 420 654 21715294 21715059 4.790000e-93 351.0
37 TraesCS6A01G211800 chr3D 86.207 145 18 2 2851 2995 283112384 283112526 4.030000e-34 156.0
38 TraesCS6A01G211800 chr3D 87.755 49 6 0 1934 1982 381994600 381994552 1.170000e-04 58.4
39 TraesCS6A01G211800 chr1A 91.600 250 14 1 2409 2651 251369258 251369507 3.730000e-89 339.0
40 TraesCS6A01G211800 chr6B 90.254 236 22 1 420 654 123245185 123244950 1.050000e-79 307.0
41 TraesCS6A01G211800 chrUn 89.683 126 13 0 246 371 87693051 87692926 8.660000e-36 161.0
42 TraesCS6A01G211800 chr7B 88.889 126 14 0 246 371 698890962 698890837 4.030000e-34 156.0
43 TraesCS6A01G211800 chr7A 83.607 122 20 0 237 358 669699744 669699865 6.840000e-22 115.0
44 TraesCS6A01G211800 chr4D 78.523 149 32 0 241 389 29670210 29670062 6.890000e-17 99.0
45 TraesCS6A01G211800 chr3B 89.130 46 5 0 1937 1982 497714058 497714013 1.170000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G211800 chr6A 384874113 384877132 3019 False 5578.000000 5578 100.0000 1 3020 1 chr6A.!!$F1 3019
1 TraesCS6A01G211800 chr4B 65594680 65597494 2814 True 1324.666667 3465 93.7090 239 2965 3 chr4B.!!$R1 2726
2 TraesCS6A01G211800 chr2D 36662869 36664968 2099 True 1576.500000 2929 96.0240 1019 3020 2 chr2D.!!$R1 2001
3 TraesCS6A01G211800 chr3A 127085178 127087980 2802 True 1194.000000 2158 89.6710 239 3020 2 chr3A.!!$R4 2781
4 TraesCS6A01G211800 chr3A 359360967 359364125 3158 False 551.800000 1572 87.8714 234 3015 5 chr3A.!!$F2 2781
5 TraesCS6A01G211800 chr2A 723640322 723642801 2479 True 833.666667 1661 90.2480 1147 3020 3 chr2A.!!$R1 1873
6 TraesCS6A01G211800 chr7D 76781206 76782122 916 True 1131.000000 1131 89.4220 2126 3015 1 chr7D.!!$R1 889
7 TraesCS6A01G211800 chr5D 66295865 66298156 2291 True 554.000000 859 90.6222 720 3020 5 chr5D.!!$R2 2300

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.109723 AGTTAGGGTTGCAAGCGGAA 59.890 50.0 21.43 14.79 0.00 4.30 F
45 46 0.179129 GCAAGCGGAATCCACAATGG 60.179 55.0 0.00 0.00 39.43 3.16 F
199 200 0.179134 CTACTACGGCAGTGCAGTCC 60.179 60.0 24.38 1.20 38.09 3.85 F
632 637 0.249120 GGCACAAAATACAAGGGGGC 59.751 55.0 0.00 0.00 0.00 5.80 F
633 638 0.249120 GCACAAAATACAAGGGGGCC 59.751 55.0 0.00 0.00 0.00 5.80 F
1394 2140 0.327924 ATGCGTGTTCCATCCCAAGA 59.672 50.0 0.00 0.00 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1267 1807 0.180406 AACAGTCGACTTGCAGGGTT 59.820 50.000 17.26 12.92 0.00 4.11 R
1506 2254 1.511613 TCCTATGGAGGGCTTCTTGG 58.488 55.000 0.00 0.00 43.94 3.61 R
1754 2524 2.033141 GCAGCAGGCCTGACAGAA 59.967 61.111 37.21 0.00 44.64 3.02 R
1780 2550 3.464720 TCTCACACTCTTGAGGAGGAT 57.535 47.619 0.00 0.00 45.83 3.24 R
1787 2919 3.801638 GCTGCTTCTTCTCACACTCTTGA 60.802 47.826 0.00 0.00 0.00 3.02 R
2995 4168 2.015587 CCAAGAGAGAAGCTCCAATGC 58.984 52.381 0.00 0.00 45.10 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.865343 CGGCGAGAATGTACCTAGTT 57.135 50.000 0.00 0.00 0.00 2.24
20 21 3.976793 CGGCGAGAATGTACCTAGTTA 57.023 47.619 0.00 0.00 0.00 2.24
21 22 3.886549 CGGCGAGAATGTACCTAGTTAG 58.113 50.000 0.00 0.00 0.00 2.34
32 33 1.369625 CCTAGTTAGGGTTGCAAGCG 58.630 55.000 21.43 6.52 39.86 4.68
33 34 1.369625 CTAGTTAGGGTTGCAAGCGG 58.630 55.000 21.43 3.05 0.00 5.52
34 35 0.978151 TAGTTAGGGTTGCAAGCGGA 59.022 50.000 21.43 9.58 0.00 5.54
35 36 0.109723 AGTTAGGGTTGCAAGCGGAA 59.890 50.000 21.43 14.79 0.00 4.30
36 37 1.173913 GTTAGGGTTGCAAGCGGAAT 58.826 50.000 21.43 10.37 0.00 3.01
37 38 1.132453 GTTAGGGTTGCAAGCGGAATC 59.868 52.381 21.43 8.03 0.00 2.52
38 39 0.393808 TAGGGTTGCAAGCGGAATCC 60.394 55.000 21.43 6.99 43.89 3.01
39 40 1.976474 GGGTTGCAAGCGGAATCCA 60.976 57.895 21.43 0.00 43.08 3.41
40 41 1.212751 GGTTGCAAGCGGAATCCAC 59.787 57.895 13.62 0.00 0.00 4.02
41 42 1.523154 GGTTGCAAGCGGAATCCACA 61.523 55.000 13.62 0.00 0.00 4.17
42 43 0.313672 GTTGCAAGCGGAATCCACAA 59.686 50.000 0.00 0.00 0.00 3.33
43 44 1.067635 GTTGCAAGCGGAATCCACAAT 60.068 47.619 0.00 0.00 0.00 2.71
44 45 0.527113 TGCAAGCGGAATCCACAATG 59.473 50.000 0.00 0.00 0.00 2.82
45 46 0.179129 GCAAGCGGAATCCACAATGG 60.179 55.000 0.00 0.00 39.43 3.16
46 47 1.176527 CAAGCGGAATCCACAATGGT 58.823 50.000 0.00 0.00 39.03 3.55
47 48 1.545582 CAAGCGGAATCCACAATGGTT 59.454 47.619 0.00 0.00 39.03 3.67
48 49 1.923356 AGCGGAATCCACAATGGTTT 58.077 45.000 0.00 0.00 39.03 3.27
49 50 1.818674 AGCGGAATCCACAATGGTTTC 59.181 47.619 0.00 9.32 42.62 2.78
50 51 1.543802 GCGGAATCCACAATGGTTTCA 59.456 47.619 16.65 0.00 44.24 2.69
51 52 2.415893 GCGGAATCCACAATGGTTTCAG 60.416 50.000 16.65 14.30 44.24 3.02
52 53 3.081061 CGGAATCCACAATGGTTTCAGA 58.919 45.455 16.65 0.00 44.24 3.27
53 54 3.505680 CGGAATCCACAATGGTTTCAGAA 59.494 43.478 16.65 0.00 44.24 3.02
54 55 4.158394 CGGAATCCACAATGGTTTCAGAAT 59.842 41.667 16.65 0.00 44.24 2.40
55 56 5.413499 GGAATCCACAATGGTTTCAGAATG 58.587 41.667 16.65 0.00 44.24 2.67
56 57 5.047092 GGAATCCACAATGGTTTCAGAATGT 60.047 40.000 16.65 0.00 44.24 2.71
57 58 6.152661 GGAATCCACAATGGTTTCAGAATGTA 59.847 38.462 16.65 0.00 44.24 2.29
58 59 7.309744 GGAATCCACAATGGTTTCAGAATGTAA 60.310 37.037 16.65 0.00 44.24 2.41
59 60 6.325919 TCCACAATGGTTTCAGAATGTAAC 57.674 37.500 0.00 0.00 44.39 2.50
69 70 6.909909 GTTTCAGAATGTAACCTACTTTGGG 58.090 40.000 0.00 0.00 40.02 4.12
70 71 5.836024 TCAGAATGTAACCTACTTTGGGT 57.164 39.130 0.00 0.00 36.49 4.51
71 72 6.195600 TCAGAATGTAACCTACTTTGGGTT 57.804 37.500 3.62 3.62 41.84 4.11
72 73 6.001460 TCAGAATGTAACCTACTTTGGGTTG 58.999 40.000 8.20 0.00 40.54 3.77
73 74 4.765339 AGAATGTAACCTACTTTGGGTTGC 59.235 41.667 8.20 7.43 45.41 4.17
76 77 4.922471 GTAACCTACTTTGGGTTGCAAA 57.078 40.909 0.00 0.00 45.41 3.68
89 90 3.078594 GTTGCAAACGGAATCAACAGT 57.921 42.857 0.00 0.00 36.92 3.55
90 91 2.772568 TGCAAACGGAATCAACAGTG 57.227 45.000 0.00 0.00 0.00 3.66
91 92 2.293170 TGCAAACGGAATCAACAGTGA 58.707 42.857 0.00 0.00 38.41 3.41
92 93 2.884012 TGCAAACGGAATCAACAGTGAT 59.116 40.909 0.00 0.00 46.91 3.06
93 94 6.242730 GTTGCAAACGGAATCAACAGTGATT 61.243 40.000 0.00 1.66 46.36 2.57
94 95 7.659012 GTTGCAAACGGAATCAACAGTGATTT 61.659 38.462 0.00 0.00 44.96 2.17
95 96 9.544384 GTTGCAAACGGAATCAACAGTGATTTG 62.544 40.741 0.00 0.00 44.96 2.32
101 102 3.818961 ATCAACAGTGATTTGCTGACG 57.181 42.857 0.00 0.00 42.03 4.35
102 103 2.560504 TCAACAGTGATTTGCTGACGT 58.439 42.857 0.00 0.00 37.40 4.34
103 104 3.723260 TCAACAGTGATTTGCTGACGTA 58.277 40.909 0.00 0.00 37.40 3.57
104 105 4.314961 TCAACAGTGATTTGCTGACGTAT 58.685 39.130 0.00 0.00 37.40 3.06
105 106 5.474825 TCAACAGTGATTTGCTGACGTATA 58.525 37.500 0.00 0.00 37.40 1.47
106 107 5.347635 TCAACAGTGATTTGCTGACGTATAC 59.652 40.000 0.00 0.00 37.40 1.47
107 108 3.857665 ACAGTGATTTGCTGACGTATACG 59.142 43.478 23.24 23.24 40.04 3.06
126 127 3.458189 ACGTAGTAATCATCAGCAAGCC 58.542 45.455 0.00 0.00 41.94 4.35
127 128 2.472861 CGTAGTAATCATCAGCAAGCCG 59.527 50.000 0.00 0.00 0.00 5.52
128 129 2.698855 AGTAATCATCAGCAAGCCGT 57.301 45.000 0.00 0.00 0.00 5.68
129 130 2.991250 AGTAATCATCAGCAAGCCGTT 58.009 42.857 0.00 0.00 0.00 4.44
130 131 2.939103 AGTAATCATCAGCAAGCCGTTC 59.061 45.455 0.00 0.00 0.00 3.95
131 132 2.119801 AATCATCAGCAAGCCGTTCT 57.880 45.000 0.00 0.00 0.00 3.01
132 133 2.119801 ATCATCAGCAAGCCGTTCTT 57.880 45.000 0.00 0.00 34.78 2.52
141 142 3.806316 CAAGCCGTTCTTGTTTACGAT 57.194 42.857 0.00 0.00 45.48 3.73
142 143 3.732943 CAAGCCGTTCTTGTTTACGATC 58.267 45.455 0.00 0.00 45.48 3.69
143 144 3.034721 AGCCGTTCTTGTTTACGATCA 57.965 42.857 0.00 0.00 40.03 2.92
144 145 3.395639 AGCCGTTCTTGTTTACGATCAA 58.604 40.909 0.00 0.00 40.03 2.57
145 146 3.185797 AGCCGTTCTTGTTTACGATCAAC 59.814 43.478 0.00 0.00 40.03 3.18
146 147 7.516144 AAGCCGTTCTTGTTTACGATCAACG 62.516 44.000 0.00 0.00 40.03 4.10
147 148 3.422603 CCGTTCTTGTTTACGATCAACGG 60.423 47.826 12.07 12.07 46.14 4.44
148 149 6.911121 CCGTTCTTGTTTACGATCAACGGC 62.911 50.000 13.17 0.00 45.75 5.68
167 168 0.562950 CGTACGTACGGTCATTTCGC 59.437 55.000 34.54 0.92 45.30 4.70
168 169 1.616620 GTACGTACGGTCATTTCGCA 58.383 50.000 21.06 0.00 0.00 5.10
169 170 2.187707 GTACGTACGGTCATTTCGCAT 58.812 47.619 21.06 0.00 0.00 4.73
170 171 1.274596 ACGTACGGTCATTTCGCATC 58.725 50.000 21.06 0.00 0.00 3.91
171 172 1.273688 CGTACGGTCATTTCGCATCA 58.726 50.000 7.57 0.00 0.00 3.07
172 173 1.656594 CGTACGGTCATTTCGCATCAA 59.343 47.619 7.57 0.00 0.00 2.57
173 174 2.092995 CGTACGGTCATTTCGCATCAAA 59.907 45.455 7.57 0.00 0.00 2.69
174 175 2.611974 ACGGTCATTTCGCATCAAAC 57.388 45.000 0.00 0.00 0.00 2.93
175 176 1.136085 ACGGTCATTTCGCATCAAACG 60.136 47.619 0.00 0.00 0.00 3.60
176 177 1.259316 GGTCATTTCGCATCAAACGC 58.741 50.000 0.00 0.00 0.00 4.84
177 178 1.400888 GGTCATTTCGCATCAAACGCA 60.401 47.619 0.00 0.00 0.00 5.24
178 179 1.643810 GTCATTTCGCATCAAACGCAC 59.356 47.619 0.00 0.00 0.00 5.34
179 180 0.629767 CATTTCGCATCAAACGCACG 59.370 50.000 0.00 0.00 0.00 5.34
180 181 1.065031 ATTTCGCATCAAACGCACGC 61.065 50.000 0.00 0.00 0.00 5.34
181 182 2.111932 TTTCGCATCAAACGCACGCT 62.112 50.000 0.00 0.00 0.00 5.07
182 183 1.285668 TTCGCATCAAACGCACGCTA 61.286 50.000 0.00 0.00 0.00 4.26
183 184 1.577616 CGCATCAAACGCACGCTAC 60.578 57.895 0.00 0.00 0.00 3.58
184 185 1.787847 GCATCAAACGCACGCTACT 59.212 52.632 0.00 0.00 0.00 2.57
185 186 0.996462 GCATCAAACGCACGCTACTA 59.004 50.000 0.00 0.00 0.00 1.82
186 187 1.266891 GCATCAAACGCACGCTACTAC 60.267 52.381 0.00 0.00 0.00 2.73
187 188 1.007422 CATCAAACGCACGCTACTACG 60.007 52.381 0.00 0.00 39.50 3.51
188 189 0.730155 TCAAACGCACGCTACTACGG 60.730 55.000 0.00 0.00 37.37 4.02
189 190 2.090524 AAACGCACGCTACTACGGC 61.091 57.895 0.00 0.00 37.37 5.68
190 191 2.752322 AAACGCACGCTACTACGGCA 62.752 55.000 0.00 0.00 37.37 5.69
191 192 2.949678 CGCACGCTACTACGGCAG 60.950 66.667 0.00 0.00 37.37 4.85
192 193 2.181021 GCACGCTACTACGGCAGT 59.819 61.111 0.00 0.00 41.62 4.40
193 194 2.158959 GCACGCTACTACGGCAGTG 61.159 63.158 0.00 0.00 38.24 3.66
194 195 2.158959 CACGCTACTACGGCAGTGC 61.159 63.158 6.55 6.55 38.24 4.40
195 196 2.180769 CGCTACTACGGCAGTGCA 59.819 61.111 18.61 0.00 38.24 4.57
196 197 1.874019 CGCTACTACGGCAGTGCAG 60.874 63.158 18.61 16.27 38.24 4.41
197 198 1.215647 GCTACTACGGCAGTGCAGT 59.784 57.895 24.13 24.13 40.45 4.40
198 199 0.802607 GCTACTACGGCAGTGCAGTC 60.803 60.000 24.38 6.23 38.09 3.51
199 200 0.179134 CTACTACGGCAGTGCAGTCC 60.179 60.000 24.38 1.20 38.09 3.85
203 204 3.414700 CGGCAGTGCAGTCCGTTC 61.415 66.667 18.61 0.00 38.47 3.95
204 205 3.050275 GGCAGTGCAGTCCGTTCC 61.050 66.667 18.61 0.00 0.00 3.62
205 206 2.031163 GCAGTGCAGTCCGTTCCT 59.969 61.111 11.09 0.00 0.00 3.36
206 207 2.029844 GCAGTGCAGTCCGTTCCTC 61.030 63.158 11.09 0.00 0.00 3.71
207 208 1.367471 CAGTGCAGTCCGTTCCTCA 59.633 57.895 0.00 0.00 0.00 3.86
208 209 0.668706 CAGTGCAGTCCGTTCCTCAG 60.669 60.000 0.00 0.00 0.00 3.35
209 210 1.115930 AGTGCAGTCCGTTCCTCAGT 61.116 55.000 0.00 0.00 0.00 3.41
210 211 0.249911 GTGCAGTCCGTTCCTCAGTT 60.250 55.000 0.00 0.00 0.00 3.16
211 212 0.249868 TGCAGTCCGTTCCTCAGTTG 60.250 55.000 0.00 0.00 0.00 3.16
212 213 0.951040 GCAGTCCGTTCCTCAGTTGG 60.951 60.000 0.00 0.00 0.00 3.77
213 214 0.951040 CAGTCCGTTCCTCAGTTGGC 60.951 60.000 0.00 0.00 0.00 4.52
214 215 2.027625 GTCCGTTCCTCAGTTGGCG 61.028 63.158 0.00 0.00 0.00 5.69
215 216 3.423154 CCGTTCCTCAGTTGGCGC 61.423 66.667 0.00 0.00 0.00 6.53
216 217 2.664851 CGTTCCTCAGTTGGCGCA 60.665 61.111 10.83 0.00 0.00 6.09
217 218 2.250939 CGTTCCTCAGTTGGCGCAA 61.251 57.895 10.83 0.00 0.00 4.85
218 219 1.282875 GTTCCTCAGTTGGCGCAAC 59.717 57.895 10.83 12.09 43.83 4.17
219 220 1.896660 TTCCTCAGTTGGCGCAACC 60.897 57.895 10.83 0.00 44.49 3.77
220 221 3.365265 CCTCAGTTGGCGCAACCC 61.365 66.667 10.83 0.00 44.49 4.11
221 222 3.365265 CTCAGTTGGCGCAACCCC 61.365 66.667 10.83 0.00 44.49 4.95
222 223 4.966787 TCAGTTGGCGCAACCCCC 62.967 66.667 10.83 0.00 44.49 5.40
223 224 4.974721 CAGTTGGCGCAACCCCCT 62.975 66.667 10.83 0.00 44.49 4.79
224 225 4.974721 AGTTGGCGCAACCCCCTG 62.975 66.667 10.83 0.00 44.49 4.45
230 231 4.431131 CGCAACCCCCTGCCTCAT 62.431 66.667 0.00 0.00 39.26 2.90
231 232 3.006677 GCAACCCCCTGCCTCATA 58.993 61.111 0.00 0.00 36.25 2.15
232 233 1.538666 GCAACCCCCTGCCTCATAT 59.461 57.895 0.00 0.00 36.25 1.78
236 237 2.644299 CAACCCCCTGCCTCATATCATA 59.356 50.000 0.00 0.00 0.00 2.15
348 353 2.158579 ACACGTTAATTTGTGGGGGAGT 60.159 45.455 9.37 0.00 40.39 3.85
411 416 4.569865 GGGGATAGATGGTCAAACTTTGGT 60.570 45.833 1.62 0.00 0.00 3.67
421 426 5.106078 TGGTCAAACTTTGGTTGTTGACTAC 60.106 40.000 13.34 1.50 40.36 2.73
422 427 5.124936 GGTCAAACTTTGGTTGTTGACTACT 59.875 40.000 13.34 0.00 40.36 2.57
423 428 6.255950 GTCAAACTTTGGTTGTTGACTACTC 58.744 40.000 7.87 0.00 38.82 2.59
424 429 5.355910 TCAAACTTTGGTTGTTGACTACTCC 59.644 40.000 1.62 0.00 35.63 3.85
425 430 3.816994 ACTTTGGTTGTTGACTACTCCC 58.183 45.455 0.00 0.00 0.00 4.30
427 432 3.764237 TTGGTTGTTGACTACTCCCTC 57.236 47.619 0.00 0.00 0.00 4.30
429 434 1.067071 GGTTGTTGACTACTCCCTCCG 60.067 57.143 0.00 0.00 0.00 4.63
430 435 1.617357 GTTGTTGACTACTCCCTCCGT 59.383 52.381 0.00 0.00 0.00 4.69
434 439 1.823041 GACTACTCCCTCCGTCCGG 60.823 68.421 0.00 0.00 0.00 5.14
435 440 2.518825 CTACTCCCTCCGTCCGGG 60.519 72.222 0.00 0.00 43.38 5.73
437 442 2.850828 CTACTCCCTCCGTCCGGGTT 62.851 65.000 0.00 0.00 42.56 4.11
438 443 2.445492 TACTCCCTCCGTCCGGGTTT 62.445 60.000 0.00 0.00 42.56 3.27
439 444 1.683365 CTCCCTCCGTCCGGGTTTA 60.683 63.158 0.00 0.00 42.56 2.01
442 447 1.122227 CCCTCCGTCCGGGTTTATTA 58.878 55.000 0.00 0.00 36.91 0.98
443 448 1.069668 CCCTCCGTCCGGGTTTATTAG 59.930 57.143 0.00 0.00 36.91 1.73
444 449 1.069668 CCTCCGTCCGGGTTTATTAGG 59.930 57.143 0.00 0.00 37.00 2.69
445 450 0.465287 TCCGTCCGGGTTTATTAGGC 59.535 55.000 0.00 0.00 37.00 3.93
446 451 0.533531 CCGTCCGGGTTTATTAGGCC 60.534 60.000 0.00 0.00 0.00 5.19
447 452 0.466963 CGTCCGGGTTTATTAGGCCT 59.533 55.000 11.78 11.78 0.00 5.19
448 453 1.134310 CGTCCGGGTTTATTAGGCCTT 60.134 52.381 12.58 0.00 0.00 4.35
449 454 2.102925 CGTCCGGGTTTATTAGGCCTTA 59.897 50.000 12.58 0.11 0.00 2.69
450 455 3.244318 CGTCCGGGTTTATTAGGCCTTAT 60.244 47.826 12.58 10.82 0.00 1.73
451 456 4.722220 GTCCGGGTTTATTAGGCCTTATT 58.278 43.478 12.58 0.00 0.00 1.40
452 457 4.517832 GTCCGGGTTTATTAGGCCTTATTG 59.482 45.833 12.58 0.00 0.00 1.90
453 458 4.166531 TCCGGGTTTATTAGGCCTTATTGT 59.833 41.667 12.58 0.00 0.00 2.71
454 459 5.369110 TCCGGGTTTATTAGGCCTTATTGTA 59.631 40.000 12.58 0.00 0.00 2.41
455 460 6.044637 TCCGGGTTTATTAGGCCTTATTGTAT 59.955 38.462 12.58 0.00 0.00 2.29
456 461 6.717997 CCGGGTTTATTAGGCCTTATTGTATT 59.282 38.462 12.58 0.00 0.00 1.89
457 462 7.231925 CCGGGTTTATTAGGCCTTATTGTATTT 59.768 37.037 12.58 0.00 0.00 1.40
458 463 8.635328 CGGGTTTATTAGGCCTTATTGTATTTT 58.365 33.333 12.58 0.00 0.00 1.82
459 464 9.758651 GGGTTTATTAGGCCTTATTGTATTTTG 57.241 33.333 12.58 0.00 0.00 2.44
462 467 9.810545 TTTATTAGGCCTTATTGTATTTTGTGC 57.189 29.630 12.58 0.00 0.00 4.57
463 468 7.660030 ATTAGGCCTTATTGTATTTTGTGCT 57.340 32.000 12.58 0.00 0.00 4.40
464 469 8.760980 ATTAGGCCTTATTGTATTTTGTGCTA 57.239 30.769 12.58 0.00 0.00 3.49
465 470 8.582657 TTAGGCCTTATTGTATTTTGTGCTAA 57.417 30.769 12.58 0.00 0.00 3.09
466 471 7.475137 AGGCCTTATTGTATTTTGTGCTAAA 57.525 32.000 0.00 0.00 0.00 1.85
467 472 7.902087 AGGCCTTATTGTATTTTGTGCTAAAA 58.098 30.769 0.00 2.70 0.00 1.52
468 473 8.539544 AGGCCTTATTGTATTTTGTGCTAAAAT 58.460 29.630 0.00 13.92 34.55 1.82
469 474 9.161629 GGCCTTATTGTATTTTGTGCTAAAATT 57.838 29.630 14.43 3.55 32.64 1.82
477 482 8.547069 TGTATTTTGTGCTAAAATTTGACTTGC 58.453 29.630 14.43 0.00 32.64 4.01
478 483 6.974932 TTTTGTGCTAAAATTTGACTTGCA 57.025 29.167 0.00 0.00 0.00 4.08
479 484 6.974932 TTTGTGCTAAAATTTGACTTGCAA 57.025 29.167 0.00 0.00 33.88 4.08
480 485 7.551035 TTTGTGCTAAAATTTGACTTGCAAT 57.449 28.000 0.00 0.00 36.15 3.56
481 486 7.551035 TTGTGCTAAAATTTGACTTGCAATT 57.449 28.000 0.00 0.00 36.15 2.32
482 487 7.551035 TGTGCTAAAATTTGACTTGCAATTT 57.449 28.000 0.00 0.00 36.15 1.82
483 488 8.654230 TGTGCTAAAATTTGACTTGCAATTTA 57.346 26.923 0.00 0.00 36.15 1.40
484 489 9.102757 TGTGCTAAAATTTGACTTGCAATTTAA 57.897 25.926 0.00 0.00 36.15 1.52
485 490 9.368921 GTGCTAAAATTTGACTTGCAATTTAAC 57.631 29.630 0.00 0.00 36.15 2.01
486 491 9.323985 TGCTAAAATTTGACTTGCAATTTAACT 57.676 25.926 0.00 0.00 36.15 2.24
532 537 9.745323 GTCACAAAAATTATATTGCTGAAAAGC 57.255 29.630 0.00 0.00 0.00 3.51
533 538 8.934825 TCACAAAAATTATATTGCTGAAAAGCC 58.065 29.630 0.00 0.00 0.00 4.35
534 539 8.177013 CACAAAAATTATATTGCTGAAAAGCCC 58.823 33.333 0.00 0.00 0.00 5.19
535 540 8.102676 ACAAAAATTATATTGCTGAAAAGCCCT 58.897 29.630 0.00 0.00 0.00 5.19
536 541 8.949177 CAAAAATTATATTGCTGAAAAGCCCTT 58.051 29.630 0.00 0.00 0.00 3.95
537 542 9.519191 AAAAATTATATTGCTGAAAAGCCCTTT 57.481 25.926 0.00 0.00 0.00 3.11
538 543 8.722480 AAATTATATTGCTGAAAAGCCCTTTC 57.278 30.769 2.60 2.60 43.33 2.62
549 554 6.048073 GAAAAGCCCTTTCAAACACAAATC 57.952 37.500 4.42 0.00 42.68 2.17
550 555 3.751479 AGCCCTTTCAAACACAAATCC 57.249 42.857 0.00 0.00 0.00 3.01
551 556 3.037549 AGCCCTTTCAAACACAAATCCA 58.962 40.909 0.00 0.00 0.00 3.41
552 557 3.454082 AGCCCTTTCAAACACAAATCCAA 59.546 39.130 0.00 0.00 0.00 3.53
553 558 4.102996 AGCCCTTTCAAACACAAATCCAAT 59.897 37.500 0.00 0.00 0.00 3.16
554 559 4.213906 GCCCTTTCAAACACAAATCCAATG 59.786 41.667 0.00 0.00 0.00 2.82
555 560 4.756135 CCCTTTCAAACACAAATCCAATGG 59.244 41.667 0.00 0.00 0.00 3.16
556 561 5.367302 CCTTTCAAACACAAATCCAATGGT 58.633 37.500 0.00 0.00 0.00 3.55
557 562 5.236911 CCTTTCAAACACAAATCCAATGGTG 59.763 40.000 0.00 0.00 37.29 4.17
558 563 5.350504 TTCAAACACAAATCCAATGGTGT 57.649 34.783 0.00 0.00 45.66 4.16
559 564 6.471233 TTCAAACACAAATCCAATGGTGTA 57.529 33.333 0.00 0.00 43.16 2.90
560 565 6.471233 TCAAACACAAATCCAATGGTGTAA 57.529 33.333 0.00 0.00 43.16 2.41
561 566 7.060383 TCAAACACAAATCCAATGGTGTAAT 57.940 32.000 0.00 0.00 43.16 1.89
562 567 7.504403 TCAAACACAAATCCAATGGTGTAATT 58.496 30.769 0.00 0.00 43.16 1.40
563 568 7.989741 TCAAACACAAATCCAATGGTGTAATTT 59.010 29.630 0.00 0.00 43.16 1.82
564 569 8.619546 CAAACACAAATCCAATGGTGTAATTTT 58.380 29.630 0.00 0.00 43.16 1.82
565 570 8.744568 AACACAAATCCAATGGTGTAATTTTT 57.255 26.923 0.00 0.00 43.16 1.94
566 571 8.152309 ACACAAATCCAATGGTGTAATTTTTG 57.848 30.769 0.00 4.23 42.24 2.44
567 572 7.772757 ACACAAATCCAATGGTGTAATTTTTGT 59.227 29.630 9.00 9.00 42.24 2.83
568 573 9.265901 CACAAATCCAATGGTGTAATTTTTGTA 57.734 29.630 0.00 0.00 31.23 2.41
616 621 9.812347 AATAATATAGATGGTCAAAATCTGGCA 57.188 29.630 0.00 0.00 35.92 4.92
617 622 7.516198 AATATAGATGGTCAAAATCTGGCAC 57.484 36.000 0.00 0.00 35.92 5.01
618 623 3.159213 AGATGGTCAAAATCTGGCACA 57.841 42.857 0.00 0.00 33.08 4.57
619 624 3.499338 AGATGGTCAAAATCTGGCACAA 58.501 40.909 0.00 0.00 38.70 3.33
620 625 3.896888 AGATGGTCAAAATCTGGCACAAA 59.103 39.130 0.00 0.00 38.70 2.83
621 626 4.344679 AGATGGTCAAAATCTGGCACAAAA 59.655 37.500 0.00 0.00 38.70 2.44
622 627 4.686191 TGGTCAAAATCTGGCACAAAAT 57.314 36.364 0.00 0.00 38.70 1.82
623 628 5.798125 TGGTCAAAATCTGGCACAAAATA 57.202 34.783 0.00 0.00 38.70 1.40
624 629 5.537188 TGGTCAAAATCTGGCACAAAATAC 58.463 37.500 0.00 0.00 38.70 1.89
625 630 5.069648 TGGTCAAAATCTGGCACAAAATACA 59.930 36.000 0.00 0.00 38.70 2.29
626 631 5.988561 GGTCAAAATCTGGCACAAAATACAA 59.011 36.000 0.00 0.00 38.70 2.41
627 632 6.146021 GGTCAAAATCTGGCACAAAATACAAG 59.854 38.462 0.00 0.00 38.70 3.16
628 633 6.146021 GTCAAAATCTGGCACAAAATACAAGG 59.854 38.462 0.00 0.00 38.70 3.61
629 634 4.806640 AATCTGGCACAAAATACAAGGG 57.193 40.909 0.00 0.00 38.70 3.95
630 635 2.524306 TCTGGCACAAAATACAAGGGG 58.476 47.619 0.00 0.00 38.70 4.79
631 636 1.550072 CTGGCACAAAATACAAGGGGG 59.450 52.381 0.00 0.00 38.70 5.40
632 637 0.249120 GGCACAAAATACAAGGGGGC 59.751 55.000 0.00 0.00 0.00 5.80
633 638 0.249120 GCACAAAATACAAGGGGGCC 59.751 55.000 0.00 0.00 0.00 5.80
634 639 1.937191 CACAAAATACAAGGGGGCCT 58.063 50.000 0.84 0.00 33.87 5.19
635 640 2.886391 GCACAAAATACAAGGGGGCCTA 60.886 50.000 0.84 0.00 31.13 3.93
636 641 3.436243 CACAAAATACAAGGGGGCCTAA 58.564 45.455 0.84 0.00 31.13 2.69
637 642 4.030216 CACAAAATACAAGGGGGCCTAAT 58.970 43.478 0.84 0.00 31.13 1.73
638 643 5.205056 CACAAAATACAAGGGGGCCTAATA 58.795 41.667 0.84 0.00 31.13 0.98
639 644 5.659079 CACAAAATACAAGGGGGCCTAATAA 59.341 40.000 0.84 0.00 31.13 1.40
640 645 6.155393 CACAAAATACAAGGGGGCCTAATAAA 59.845 38.462 0.84 0.00 31.13 1.40
641 646 6.155565 ACAAAATACAAGGGGGCCTAATAAAC 59.844 38.462 0.84 0.00 31.13 2.01
642 647 2.840640 ACAAGGGGGCCTAATAAACC 57.159 50.000 0.84 0.00 31.13 3.27
643 648 2.294194 ACAAGGGGGCCTAATAAACCT 58.706 47.619 0.84 0.00 31.13 3.50
644 649 2.024369 ACAAGGGGGCCTAATAAACCTG 60.024 50.000 0.84 0.00 31.13 4.00
645 650 1.231963 AGGGGGCCTAATAAACCTGG 58.768 55.000 0.84 0.00 28.47 4.45
646 651 1.228190 GGGGGCCTAATAAACCTGGA 58.772 55.000 0.84 0.00 0.00 3.86
647 652 1.133575 GGGGGCCTAATAAACCTGGAC 60.134 57.143 0.84 0.00 0.00 4.02
648 653 1.567175 GGGGCCTAATAAACCTGGACA 59.433 52.381 0.84 0.00 0.00 4.02
649 654 2.422945 GGGGCCTAATAAACCTGGACAG 60.423 54.545 0.84 0.00 0.00 3.51
650 655 2.508300 GGGCCTAATAAACCTGGACAGA 59.492 50.000 0.84 0.00 0.00 3.41
651 656 3.433740 GGGCCTAATAAACCTGGACAGAG 60.434 52.174 0.84 0.00 0.00 3.35
774 787 2.095604 ATAGCCTCTCCTTCCTCACC 57.904 55.000 0.00 0.00 0.00 4.02
821 834 2.278857 CATCCGAGCTCCCGTTCG 60.279 66.667 8.47 0.00 42.55 3.95
894 907 3.283684 CCGCTTGAAACCCACGCA 61.284 61.111 0.00 0.00 39.73 5.24
895 908 2.625823 CCGCTTGAAACCCACGCAT 61.626 57.895 0.00 0.00 39.73 4.73
933 1297 2.758327 TATGCTCCCCACGCGTCT 60.758 61.111 9.86 0.00 0.00 4.18
961 1325 2.919856 CGGCCCGAGGATCCTCAT 60.920 66.667 35.32 7.17 42.86 2.90
1305 1845 1.228003 CCAACGCCCACCAAGTGTA 60.228 57.895 0.00 0.00 0.00 2.90
1324 1864 4.208873 GTGTACGACGTAATGTTTGGACAA 59.791 41.667 9.72 0.00 39.66 3.18
1394 2140 0.327924 ATGCGTGTTCCATCCCAAGA 59.672 50.000 0.00 0.00 0.00 3.02
1545 2300 8.902806 CATAGGAAATAGGATGCAGTGTAAAAA 58.097 33.333 0.00 0.00 0.00 1.94
1550 2305 7.902920 AATAGGATGCAGTGTAAAAATGGAT 57.097 32.000 0.00 0.00 0.00 3.41
1751 2521 7.973944 GGATAAAGCAAAAGAAAATCCATACGT 59.026 33.333 0.00 0.00 33.22 3.57
1754 2524 4.522789 AGCAAAAGAAAATCCATACGTGGT 59.477 37.500 0.00 0.00 46.16 4.16
1787 2919 1.202330 CTGCTTCAGGTCATCCTCCT 58.798 55.000 0.00 0.00 43.07 3.69
1984 3122 3.531934 ACAAGCTCATGATCGACATCA 57.468 42.857 0.00 0.00 43.45 3.07
2124 3268 2.028476 ACATAGCACGTTCCAGCTGTTA 60.028 45.455 13.81 0.00 41.97 2.41
2140 3284 8.375506 TCCAGCTGTTATATATCCTTACTTTGG 58.624 37.037 13.81 0.00 0.00 3.28
2163 3307 5.813157 GGGAGACAATTAGTAGTTTCTGAGC 59.187 44.000 0.00 0.00 0.00 4.26
2243 3390 7.023171 ACCTACTACCACATGTATTTTTCCA 57.977 36.000 0.00 0.00 0.00 3.53
2258 3405 9.689976 TGTATTTTTCCATTGATTGTACAAGTG 57.310 29.630 14.65 9.65 33.22 3.16
2279 3426 6.045318 AGTGCACATGTACATCTCTGAATAC 58.955 40.000 21.04 3.18 32.87 1.89
2450 3608 7.094377 TGCAGTACCATTTCTTACTTCCAATTC 60.094 37.037 0.00 0.00 0.00 2.17
2462 3620 7.548075 TCTTACTTCCAATTCGAATAGTTGTCC 59.452 37.037 11.83 0.00 0.00 4.02
2492 3654 7.880195 AGTATTTGCCTAGCTCTAATACCATTG 59.120 37.037 16.17 0.00 33.31 2.82
2497 3659 5.477510 CCTAGCTCTAATACCATTGCTCAG 58.522 45.833 0.00 0.00 32.72 3.35
2563 3725 5.825593 TGGTGATCAGTTTTTCCTACTCT 57.174 39.130 0.00 0.00 0.00 3.24
2692 3855 1.928046 TATGCTCAGCCCAACCCCA 60.928 57.895 0.00 0.00 0.00 4.96
2816 3986 3.743521 CTTGATCAATCTAATCCCGGCA 58.256 45.455 8.96 0.00 0.00 5.69
2840 4010 2.293122 TGCGCTACTTTTTGTTCATGCT 59.707 40.909 9.73 0.00 0.00 3.79
2995 4168 7.062605 GCATTCTGTAGAAACCAAAATGATGTG 59.937 37.037 0.00 0.00 37.61 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.865343 AACTAGGTACATTCTCGCCG 57.135 50.000 0.00 0.00 0.00 6.46
1 2 3.005578 CCCTAACTAGGTACATTCTCGCC 59.994 52.174 2.15 0.00 42.03 5.54
2 3 3.635836 ACCCTAACTAGGTACATTCTCGC 59.364 47.826 2.15 0.00 42.03 5.03
3 4 5.589192 CAACCCTAACTAGGTACATTCTCG 58.411 45.833 2.15 0.00 42.03 4.04
4 5 5.105064 TGCAACCCTAACTAGGTACATTCTC 60.105 44.000 2.15 0.00 42.03 2.87
5 6 4.781087 TGCAACCCTAACTAGGTACATTCT 59.219 41.667 2.15 0.00 42.03 2.40
6 7 5.093849 TGCAACCCTAACTAGGTACATTC 57.906 43.478 2.15 0.00 42.03 2.67
7 8 5.497474 CTTGCAACCCTAACTAGGTACATT 58.503 41.667 0.00 0.00 42.03 2.71
8 9 4.625564 GCTTGCAACCCTAACTAGGTACAT 60.626 45.833 0.00 0.00 42.03 2.29
9 10 3.307199 GCTTGCAACCCTAACTAGGTACA 60.307 47.826 0.00 0.00 42.03 2.90
10 11 3.268330 GCTTGCAACCCTAACTAGGTAC 58.732 50.000 0.00 0.00 42.03 3.34
11 12 2.093869 CGCTTGCAACCCTAACTAGGTA 60.094 50.000 0.00 0.00 42.03 3.08
12 13 1.338769 CGCTTGCAACCCTAACTAGGT 60.339 52.381 0.00 0.00 42.03 3.08
13 14 1.369625 CGCTTGCAACCCTAACTAGG 58.630 55.000 0.00 0.00 43.25 3.02
14 15 1.066430 TCCGCTTGCAACCCTAACTAG 60.066 52.381 0.00 0.00 0.00 2.57
15 16 0.978151 TCCGCTTGCAACCCTAACTA 59.022 50.000 0.00 0.00 0.00 2.24
16 17 0.109723 TTCCGCTTGCAACCCTAACT 59.890 50.000 0.00 0.00 0.00 2.24
17 18 1.132453 GATTCCGCTTGCAACCCTAAC 59.868 52.381 0.00 0.00 0.00 2.34
18 19 1.459450 GATTCCGCTTGCAACCCTAA 58.541 50.000 0.00 0.00 0.00 2.69
19 20 0.393808 GGATTCCGCTTGCAACCCTA 60.394 55.000 0.00 0.00 0.00 3.53
20 21 1.678970 GGATTCCGCTTGCAACCCT 60.679 57.895 0.00 0.00 0.00 4.34
21 22 1.976474 TGGATTCCGCTTGCAACCC 60.976 57.895 0.00 0.00 0.00 4.11
22 23 1.212751 GTGGATTCCGCTTGCAACC 59.787 57.895 9.06 0.00 0.00 3.77
23 24 0.313672 TTGTGGATTCCGCTTGCAAC 59.686 50.000 16.86 0.00 34.70 4.17
24 25 1.067706 CATTGTGGATTCCGCTTGCAA 60.068 47.619 16.86 0.00 34.70 4.08
25 26 0.527113 CATTGTGGATTCCGCTTGCA 59.473 50.000 16.86 0.00 34.70 4.08
26 27 0.179129 CCATTGTGGATTCCGCTTGC 60.179 55.000 16.86 0.00 40.96 4.01
27 28 1.176527 ACCATTGTGGATTCCGCTTG 58.823 50.000 16.86 13.44 40.96 4.01
28 29 1.923356 AACCATTGTGGATTCCGCTT 58.077 45.000 16.86 2.51 40.96 4.68
29 30 1.818674 GAAACCATTGTGGATTCCGCT 59.181 47.619 16.86 0.00 41.71 5.52
30 31 1.543802 TGAAACCATTGTGGATTCCGC 59.456 47.619 9.40 9.40 45.42 5.54
31 32 3.081061 TCTGAAACCATTGTGGATTCCG 58.919 45.455 14.05 9.37 45.42 4.30
32 33 5.047092 ACATTCTGAAACCATTGTGGATTCC 60.047 40.000 14.05 0.00 45.42 3.01
33 34 6.029346 ACATTCTGAAACCATTGTGGATTC 57.971 37.500 10.88 10.88 45.97 2.52
34 35 7.378181 GTTACATTCTGAAACCATTGTGGATT 58.622 34.615 2.45 0.00 40.96 3.01
35 36 6.071391 GGTTACATTCTGAAACCATTGTGGAT 60.071 38.462 2.45 0.00 40.96 3.41
36 37 5.242838 GGTTACATTCTGAAACCATTGTGGA 59.757 40.000 2.45 0.00 40.96 4.02
37 38 5.243730 AGGTTACATTCTGAAACCATTGTGG 59.756 40.000 10.66 0.00 44.21 4.17
38 39 6.331369 AGGTTACATTCTGAAACCATTGTG 57.669 37.500 10.66 0.00 44.21 3.33
39 40 7.231467 AGTAGGTTACATTCTGAAACCATTGT 58.769 34.615 10.66 5.53 44.21 2.71
40 41 7.687941 AGTAGGTTACATTCTGAAACCATTG 57.312 36.000 10.66 0.05 44.21 2.82
41 42 8.576442 CAAAGTAGGTTACATTCTGAAACCATT 58.424 33.333 10.66 1.76 44.21 3.16
42 43 7.176690 CCAAAGTAGGTTACATTCTGAAACCAT 59.823 37.037 10.66 1.00 44.21 3.55
43 44 6.488683 CCAAAGTAGGTTACATTCTGAAACCA 59.511 38.462 10.66 0.00 44.21 3.67
44 45 6.072119 CCCAAAGTAGGTTACATTCTGAAACC 60.072 42.308 0.00 0.00 42.48 3.27
45 46 6.489022 ACCCAAAGTAGGTTACATTCTGAAAC 59.511 38.462 0.00 0.00 32.05 2.78
46 47 6.607019 ACCCAAAGTAGGTTACATTCTGAAA 58.393 36.000 0.00 0.00 32.05 2.69
47 48 6.195600 ACCCAAAGTAGGTTACATTCTGAA 57.804 37.500 0.00 0.00 32.05 3.02
48 49 5.836024 ACCCAAAGTAGGTTACATTCTGA 57.164 39.130 0.00 0.00 32.05 3.27
49 50 5.335661 GCAACCCAAAGTAGGTTACATTCTG 60.336 44.000 0.00 0.00 45.96 3.02
50 51 4.765339 GCAACCCAAAGTAGGTTACATTCT 59.235 41.667 0.00 0.00 45.96 2.40
51 52 4.521256 TGCAACCCAAAGTAGGTTACATTC 59.479 41.667 0.00 0.00 45.96 2.67
52 53 4.475345 TGCAACCCAAAGTAGGTTACATT 58.525 39.130 0.00 0.00 45.96 2.71
53 54 4.107127 TGCAACCCAAAGTAGGTTACAT 57.893 40.909 0.00 0.00 45.96 2.29
54 55 3.579534 TGCAACCCAAAGTAGGTTACA 57.420 42.857 0.00 0.00 45.96 2.41
55 56 4.613944 GTTTGCAACCCAAAGTAGGTTAC 58.386 43.478 0.00 0.00 45.96 2.50
56 57 3.315749 CGTTTGCAACCCAAAGTAGGTTA 59.684 43.478 0.00 0.00 45.96 2.85
58 59 1.679153 CGTTTGCAACCCAAAGTAGGT 59.321 47.619 0.00 0.00 43.67 3.08
59 60 1.000717 CCGTTTGCAACCCAAAGTAGG 60.001 52.381 0.00 0.00 43.67 3.18
60 61 1.950909 TCCGTTTGCAACCCAAAGTAG 59.049 47.619 0.00 0.00 43.67 2.57
61 62 2.054232 TCCGTTTGCAACCCAAAGTA 57.946 45.000 0.00 0.00 43.67 2.24
62 63 1.187087 TTCCGTTTGCAACCCAAAGT 58.813 45.000 0.00 0.00 43.67 2.66
63 64 2.223923 TGATTCCGTTTGCAACCCAAAG 60.224 45.455 0.00 0.00 43.67 2.77
64 65 1.757118 TGATTCCGTTTGCAACCCAAA 59.243 42.857 0.00 0.00 40.97 3.28
65 66 1.403814 TGATTCCGTTTGCAACCCAA 58.596 45.000 0.00 0.00 0.00 4.12
66 67 1.067821 GTTGATTCCGTTTGCAACCCA 59.932 47.619 0.00 0.00 35.74 4.51
67 68 1.067821 TGTTGATTCCGTTTGCAACCC 59.932 47.619 0.00 0.00 39.75 4.11
68 69 2.223711 ACTGTTGATTCCGTTTGCAACC 60.224 45.455 0.00 0.00 39.75 3.77
69 70 2.788786 CACTGTTGATTCCGTTTGCAAC 59.211 45.455 0.00 0.00 40.62 4.17
70 71 2.685388 TCACTGTTGATTCCGTTTGCAA 59.315 40.909 0.00 0.00 0.00 4.08
71 72 2.293170 TCACTGTTGATTCCGTTTGCA 58.707 42.857 0.00 0.00 0.00 4.08
72 73 3.559238 ATCACTGTTGATTCCGTTTGC 57.441 42.857 0.00 0.00 39.66 3.68
81 82 3.141398 ACGTCAGCAAATCACTGTTGAT 58.859 40.909 0.00 0.00 44.98 2.57
82 83 2.560504 ACGTCAGCAAATCACTGTTGA 58.439 42.857 0.00 0.00 34.59 3.18
83 84 4.668576 ATACGTCAGCAAATCACTGTTG 57.331 40.909 0.00 0.00 36.50 3.33
84 85 4.326278 CGTATACGTCAGCAAATCACTGTT 59.674 41.667 17.16 0.00 36.50 3.16
85 86 3.857665 CGTATACGTCAGCAAATCACTGT 59.142 43.478 17.16 0.00 36.50 3.55
86 87 4.422997 CGTATACGTCAGCAAATCACTG 57.577 45.455 17.16 0.00 36.44 3.66
100 101 6.032565 GCTTGCTGATGATTACTACGTATACG 59.967 42.308 23.24 23.24 46.33 3.06
101 102 6.308282 GGCTTGCTGATGATTACTACGTATAC 59.692 42.308 0.00 0.00 0.00 1.47
102 103 6.387465 GGCTTGCTGATGATTACTACGTATA 58.613 40.000 0.00 0.00 0.00 1.47
103 104 5.230942 GGCTTGCTGATGATTACTACGTAT 58.769 41.667 0.00 0.00 0.00 3.06
104 105 4.617959 GGCTTGCTGATGATTACTACGTA 58.382 43.478 0.00 0.00 0.00 3.57
105 106 3.458189 GGCTTGCTGATGATTACTACGT 58.542 45.455 0.00 0.00 0.00 3.57
106 107 2.472861 CGGCTTGCTGATGATTACTACG 59.527 50.000 0.00 0.00 0.00 3.51
107 108 3.458189 ACGGCTTGCTGATGATTACTAC 58.542 45.455 8.57 0.00 0.00 2.73
108 109 3.819564 ACGGCTTGCTGATGATTACTA 57.180 42.857 8.57 0.00 0.00 1.82
109 110 2.698855 ACGGCTTGCTGATGATTACT 57.301 45.000 8.57 0.00 0.00 2.24
110 111 2.939103 AGAACGGCTTGCTGATGATTAC 59.061 45.455 8.57 0.00 0.00 1.89
111 112 3.266510 AGAACGGCTTGCTGATGATTA 57.733 42.857 8.57 0.00 0.00 1.75
112 113 2.119801 AGAACGGCTTGCTGATGATT 57.880 45.000 8.57 0.00 0.00 2.57
113 114 1.741706 CAAGAACGGCTTGCTGATGAT 59.258 47.619 8.57 0.00 46.67 2.45
114 115 1.159285 CAAGAACGGCTTGCTGATGA 58.841 50.000 8.57 0.00 46.67 2.92
115 116 3.689224 CAAGAACGGCTTGCTGATG 57.311 52.632 8.57 0.00 46.67 3.07
122 123 3.395639 TGATCGTAAACAAGAACGGCTT 58.604 40.909 0.00 0.00 39.52 4.35
123 124 3.034721 TGATCGTAAACAAGAACGGCT 57.965 42.857 0.00 0.00 39.52 5.52
124 125 3.476181 GTTGATCGTAAACAAGAACGGC 58.524 45.455 0.00 0.00 39.52 5.68
125 126 3.422603 CCGTTGATCGTAAACAAGAACGG 60.423 47.826 12.07 12.07 39.52 4.44
126 127 3.717830 CCGTTGATCGTAAACAAGAACG 58.282 45.455 0.00 0.00 40.40 3.95
127 128 3.476181 GCCGTTGATCGTAAACAAGAAC 58.524 45.455 0.00 0.00 37.94 3.01
128 129 2.156117 CGCCGTTGATCGTAAACAAGAA 59.844 45.455 0.00 0.00 37.94 2.52
129 130 1.722464 CGCCGTTGATCGTAAACAAGA 59.278 47.619 0.00 0.00 37.94 3.02
130 131 1.458064 ACGCCGTTGATCGTAAACAAG 59.542 47.619 0.00 0.00 37.14 3.16
131 132 1.500108 ACGCCGTTGATCGTAAACAA 58.500 45.000 0.00 0.00 37.14 2.83
132 133 1.984990 GTACGCCGTTGATCGTAAACA 59.015 47.619 0.00 0.00 41.92 2.83
133 134 1.008137 CGTACGCCGTTGATCGTAAAC 60.008 52.381 0.52 0.00 41.92 2.01
134 135 1.258427 CGTACGCCGTTGATCGTAAA 58.742 50.000 0.52 0.00 41.92 2.01
135 136 2.928801 CGTACGCCGTTGATCGTAA 58.071 52.632 0.52 0.00 41.92 3.18
136 137 4.668666 CGTACGCCGTTGATCGTA 57.331 55.556 0.52 0.00 39.79 3.43
149 150 1.616620 TGCGAAATGACCGTACGTAC 58.383 50.000 15.90 15.90 0.00 3.67
150 151 2.159407 TGATGCGAAATGACCGTACGTA 60.159 45.455 15.21 0.24 0.00 3.57
151 152 1.274596 GATGCGAAATGACCGTACGT 58.725 50.000 15.21 2.02 0.00 3.57
152 153 1.273688 TGATGCGAAATGACCGTACG 58.726 50.000 8.69 8.69 0.00 3.67
153 154 3.413558 GTTTGATGCGAAATGACCGTAC 58.586 45.455 0.00 0.00 0.00 3.67
154 155 2.092995 CGTTTGATGCGAAATGACCGTA 59.907 45.455 0.00 0.00 0.00 4.02
155 156 1.136085 CGTTTGATGCGAAATGACCGT 60.136 47.619 0.00 0.00 0.00 4.83
156 157 1.523501 CGTTTGATGCGAAATGACCG 58.476 50.000 0.00 0.00 0.00 4.79
157 158 1.259316 GCGTTTGATGCGAAATGACC 58.741 50.000 0.00 0.00 0.00 4.02
158 159 1.643810 GTGCGTTTGATGCGAAATGAC 59.356 47.619 0.00 0.00 31.36 3.06
159 160 1.724336 CGTGCGTTTGATGCGAAATGA 60.724 47.619 0.00 0.00 31.36 2.57
160 161 0.629767 CGTGCGTTTGATGCGAAATG 59.370 50.000 0.00 0.00 31.36 2.32
161 162 1.065031 GCGTGCGTTTGATGCGAAAT 61.065 50.000 0.00 0.00 31.36 2.17
162 163 1.724234 GCGTGCGTTTGATGCGAAA 60.724 52.632 0.00 0.00 31.36 3.46
163 164 1.285668 TAGCGTGCGTTTGATGCGAA 61.286 50.000 0.00 0.00 31.36 4.70
164 165 1.734837 TAGCGTGCGTTTGATGCGA 60.735 52.632 0.00 0.00 31.36 5.10
165 166 1.577616 GTAGCGTGCGTTTGATGCG 60.578 57.895 0.00 0.00 31.36 4.73
166 167 0.996462 TAGTAGCGTGCGTTTGATGC 59.004 50.000 0.00 0.00 0.00 3.91
167 168 1.007422 CGTAGTAGCGTGCGTTTGATG 60.007 52.381 0.00 0.00 0.00 3.07
168 169 1.265568 CGTAGTAGCGTGCGTTTGAT 58.734 50.000 0.00 0.00 0.00 2.57
169 170 0.730155 CCGTAGTAGCGTGCGTTTGA 60.730 55.000 0.00 0.00 0.00 2.69
170 171 1.700029 CCGTAGTAGCGTGCGTTTG 59.300 57.895 0.00 0.00 0.00 2.93
171 172 2.090524 GCCGTAGTAGCGTGCGTTT 61.091 57.895 0.00 0.00 0.00 3.60
172 173 2.505557 GCCGTAGTAGCGTGCGTT 60.506 61.111 0.00 0.00 0.00 4.84
173 174 3.678717 CTGCCGTAGTAGCGTGCGT 62.679 63.158 0.00 0.00 33.18 5.24
174 175 2.949678 CTGCCGTAGTAGCGTGCG 60.950 66.667 0.00 0.00 33.18 5.34
175 176 2.158959 CACTGCCGTAGTAGCGTGC 61.159 63.158 0.00 0.00 37.60 5.34
176 177 2.158959 GCACTGCCGTAGTAGCGTG 61.159 63.158 0.00 0.00 37.60 5.34
177 178 2.181021 GCACTGCCGTAGTAGCGT 59.819 61.111 0.00 0.00 37.60 5.07
178 179 1.874019 CTGCACTGCCGTAGTAGCG 60.874 63.158 0.00 0.00 37.60 4.26
179 180 0.802607 GACTGCACTGCCGTAGTAGC 60.803 60.000 0.00 0.00 37.60 3.58
180 181 0.179134 GGACTGCACTGCCGTAGTAG 60.179 60.000 0.00 0.00 37.60 2.57
181 182 1.888018 GGACTGCACTGCCGTAGTA 59.112 57.895 0.00 0.00 37.60 1.82
182 183 2.657237 GGACTGCACTGCCGTAGT 59.343 61.111 0.00 0.00 41.36 2.73
183 184 2.507102 CGGACTGCACTGCCGTAG 60.507 66.667 8.54 0.00 40.17 3.51
187 188 3.050275 GGAACGGACTGCACTGCC 61.050 66.667 0.00 0.00 0.00 4.85
188 189 2.029844 GAGGAACGGACTGCACTGC 61.030 63.158 0.00 0.00 0.00 4.40
189 190 0.668706 CTGAGGAACGGACTGCACTG 60.669 60.000 0.00 0.00 0.00 3.66
190 191 1.115930 ACTGAGGAACGGACTGCACT 61.116 55.000 0.00 0.00 0.00 4.40
191 192 0.249911 AACTGAGGAACGGACTGCAC 60.250 55.000 0.00 0.00 0.00 4.57
192 193 0.249868 CAACTGAGGAACGGACTGCA 60.250 55.000 0.00 0.00 0.00 4.41
193 194 0.951040 CCAACTGAGGAACGGACTGC 60.951 60.000 0.00 0.00 0.00 4.40
194 195 0.951040 GCCAACTGAGGAACGGACTG 60.951 60.000 0.00 0.00 0.00 3.51
195 196 1.371558 GCCAACTGAGGAACGGACT 59.628 57.895 0.00 0.00 0.00 3.85
196 197 2.027625 CGCCAACTGAGGAACGGAC 61.028 63.158 0.00 0.00 0.00 4.79
197 198 2.342279 CGCCAACTGAGGAACGGA 59.658 61.111 0.00 0.00 0.00 4.69
198 199 3.423154 GCGCCAACTGAGGAACGG 61.423 66.667 0.00 0.00 0.00 4.44
199 200 2.250939 TTGCGCCAACTGAGGAACG 61.251 57.895 4.18 0.00 0.00 3.95
200 201 1.282875 GTTGCGCCAACTGAGGAAC 59.717 57.895 4.18 0.00 40.73 3.62
201 202 1.896660 GGTTGCGCCAACTGAGGAA 60.897 57.895 17.89 0.00 43.14 3.36
202 203 2.281484 GGTTGCGCCAACTGAGGA 60.281 61.111 17.89 0.00 43.14 3.71
203 204 3.365265 GGGTTGCGCCAACTGAGG 61.365 66.667 17.89 0.00 43.14 3.86
204 205 3.365265 GGGGTTGCGCCAACTGAG 61.365 66.667 17.89 0.00 43.14 3.35
205 206 4.966787 GGGGGTTGCGCCAACTGA 62.967 66.667 17.89 0.00 43.14 3.41
206 207 4.974721 AGGGGGTTGCGCCAACTG 62.975 66.667 17.89 0.00 43.14 3.16
207 208 4.974721 CAGGGGGTTGCGCCAACT 62.975 66.667 17.89 1.48 43.14 3.16
213 214 2.343475 ATATGAGGCAGGGGGTTGCG 62.343 60.000 0.00 0.00 45.00 4.85
214 215 0.538287 GATATGAGGCAGGGGGTTGC 60.538 60.000 0.00 0.00 43.34 4.17
215 216 0.846015 TGATATGAGGCAGGGGGTTG 59.154 55.000 0.00 0.00 0.00 3.77
216 217 1.838611 ATGATATGAGGCAGGGGGTT 58.161 50.000 0.00 0.00 0.00 4.11
217 218 2.741159 TATGATATGAGGCAGGGGGT 57.259 50.000 0.00 0.00 0.00 4.95
218 219 4.598036 ATTTATGATATGAGGCAGGGGG 57.402 45.455 0.00 0.00 0.00 5.40
219 220 8.274322 TGTATAATTTATGATATGAGGCAGGGG 58.726 37.037 0.00 0.00 0.00 4.79
220 221 9.857656 ATGTATAATTTATGATATGAGGCAGGG 57.142 33.333 0.00 0.00 0.00 4.45
385 390 3.464828 AGTTTGACCATCTATCCCCAGT 58.535 45.455 0.00 0.00 0.00 4.00
411 416 1.891150 GACGGAGGGAGTAGTCAACAA 59.109 52.381 0.00 0.00 34.09 2.83
424 429 1.069668 CCTAATAAACCCGGACGGAGG 59.930 57.143 13.13 5.18 37.50 4.30
425 430 1.539712 GCCTAATAAACCCGGACGGAG 60.540 57.143 13.13 5.04 37.50 4.63
427 432 0.533531 GGCCTAATAAACCCGGACGG 60.534 60.000 0.73 3.25 37.81 4.79
429 434 2.723322 AAGGCCTAATAAACCCGGAC 57.277 50.000 5.16 0.00 0.00 4.79
430 435 4.166531 ACAATAAGGCCTAATAAACCCGGA 59.833 41.667 5.16 0.00 0.00 5.14
437 442 9.196139 AGCACAAAATACAATAAGGCCTAATAA 57.804 29.630 5.16 0.00 0.00 1.40
438 443 8.760980 AGCACAAAATACAATAAGGCCTAATA 57.239 30.769 5.16 0.00 0.00 0.98
439 444 7.660030 AGCACAAAATACAATAAGGCCTAAT 57.340 32.000 5.16 0.00 0.00 1.73
442 447 7.475137 TTTAGCACAAAATACAATAAGGCCT 57.525 32.000 0.00 0.00 0.00 5.19
443 448 8.716646 ATTTTAGCACAAAATACAATAAGGCC 57.283 30.769 0.00 0.00 0.00 5.19
451 456 8.547069 GCAAGTCAAATTTTAGCACAAAATACA 58.453 29.630 8.84 0.00 30.38 2.29
452 457 8.547069 TGCAAGTCAAATTTTAGCACAAAATAC 58.453 29.630 8.84 5.21 30.38 1.89
453 458 8.654230 TGCAAGTCAAATTTTAGCACAAAATA 57.346 26.923 8.84 0.00 30.38 1.40
454 459 7.551035 TGCAAGTCAAATTTTAGCACAAAAT 57.449 28.000 3.84 3.84 0.00 1.82
455 460 6.974932 TGCAAGTCAAATTTTAGCACAAAA 57.025 29.167 0.00 0.00 0.00 2.44
456 461 6.974932 TTGCAAGTCAAATTTTAGCACAAA 57.025 29.167 0.00 0.00 0.00 2.83
457 462 7.551035 AATTGCAAGTCAAATTTTAGCACAA 57.449 28.000 4.94 0.00 38.34 3.33
458 463 7.551035 AAATTGCAAGTCAAATTTTAGCACA 57.449 28.000 4.94 0.00 38.34 4.57
459 464 9.368921 GTTAAATTGCAAGTCAAATTTTAGCAC 57.631 29.630 4.94 0.00 38.34 4.40
460 465 9.323985 AGTTAAATTGCAAGTCAAATTTTAGCA 57.676 25.926 4.94 0.00 38.34 3.49
506 511 9.745323 GCTTTTCAGCAATATAATTTTTGTGAC 57.255 29.630 0.00 0.00 46.49 3.67
526 531 5.007626 GGATTTGTGTTTGAAAGGGCTTTTC 59.992 40.000 14.53 14.53 44.45 2.29
527 532 4.881273 GGATTTGTGTTTGAAAGGGCTTTT 59.119 37.500 0.00 0.00 32.11 2.27
528 533 4.080638 TGGATTTGTGTTTGAAAGGGCTTT 60.081 37.500 0.00 0.00 35.14 3.51
529 534 3.454082 TGGATTTGTGTTTGAAAGGGCTT 59.546 39.130 0.00 0.00 0.00 4.35
530 535 3.037549 TGGATTTGTGTTTGAAAGGGCT 58.962 40.909 0.00 0.00 0.00 5.19
531 536 3.467374 TGGATTTGTGTTTGAAAGGGC 57.533 42.857 0.00 0.00 0.00 5.19
532 537 4.756135 CCATTGGATTTGTGTTTGAAAGGG 59.244 41.667 0.00 0.00 0.00 3.95
533 538 5.236911 CACCATTGGATTTGTGTTTGAAAGG 59.763 40.000 10.37 0.00 0.00 3.11
534 539 5.816777 ACACCATTGGATTTGTGTTTGAAAG 59.183 36.000 10.37 0.00 38.74 2.62
535 540 5.738909 ACACCATTGGATTTGTGTTTGAAA 58.261 33.333 10.37 0.00 38.74 2.69
536 541 5.350504 ACACCATTGGATTTGTGTTTGAA 57.649 34.783 10.37 0.00 38.74 2.69
537 542 6.471233 TTACACCATTGGATTTGTGTTTGA 57.529 33.333 10.37 0.00 41.76 2.69
538 543 7.727331 AATTACACCATTGGATTTGTGTTTG 57.273 32.000 10.37 0.00 41.76 2.93
539 544 8.744568 AAAATTACACCATTGGATTTGTGTTT 57.255 26.923 10.37 6.92 41.76 2.83
540 545 8.619546 CAAAAATTACACCATTGGATTTGTGTT 58.380 29.630 10.37 1.40 41.76 3.32
541 546 7.772757 ACAAAAATTACACCATTGGATTTGTGT 59.227 29.630 10.37 12.55 43.76 3.72
542 547 8.152309 ACAAAAATTACACCATTGGATTTGTG 57.848 30.769 10.37 11.96 35.62 3.33
590 595 9.812347 TGCCAGATTTTGACCATCTATATTATT 57.188 29.630 0.00 0.00 29.36 1.40
591 596 9.236006 GTGCCAGATTTTGACCATCTATATTAT 57.764 33.333 0.00 0.00 29.36 1.28
592 597 8.217111 TGTGCCAGATTTTGACCATCTATATTA 58.783 33.333 0.00 0.00 29.36 0.98
593 598 7.062322 TGTGCCAGATTTTGACCATCTATATT 58.938 34.615 0.00 0.00 29.36 1.28
594 599 6.604171 TGTGCCAGATTTTGACCATCTATAT 58.396 36.000 0.00 0.00 29.36 0.86
595 600 6.000246 TGTGCCAGATTTTGACCATCTATA 58.000 37.500 0.00 0.00 29.36 1.31
596 601 4.858850 TGTGCCAGATTTTGACCATCTAT 58.141 39.130 0.00 0.00 29.36 1.98
597 602 4.299586 TGTGCCAGATTTTGACCATCTA 57.700 40.909 0.00 0.00 29.36 1.98
598 603 3.159213 TGTGCCAGATTTTGACCATCT 57.841 42.857 0.00 0.00 0.00 2.90
599 604 3.940209 TTGTGCCAGATTTTGACCATC 57.060 42.857 0.00 0.00 0.00 3.51
600 605 4.686191 TTTTGTGCCAGATTTTGACCAT 57.314 36.364 0.00 0.00 0.00 3.55
601 606 4.686191 ATTTTGTGCCAGATTTTGACCA 57.314 36.364 0.00 0.00 0.00 4.02
602 607 5.537188 TGTATTTTGTGCCAGATTTTGACC 58.463 37.500 0.00 0.00 0.00 4.02
603 608 6.146021 CCTTGTATTTTGTGCCAGATTTTGAC 59.854 38.462 0.00 0.00 0.00 3.18
604 609 6.222389 CCTTGTATTTTGTGCCAGATTTTGA 58.778 36.000 0.00 0.00 0.00 2.69
605 610 5.409214 CCCTTGTATTTTGTGCCAGATTTTG 59.591 40.000 0.00 0.00 0.00 2.44
606 611 5.512921 CCCCTTGTATTTTGTGCCAGATTTT 60.513 40.000 0.00 0.00 0.00 1.82
607 612 4.020307 CCCCTTGTATTTTGTGCCAGATTT 60.020 41.667 0.00 0.00 0.00 2.17
608 613 3.515104 CCCCTTGTATTTTGTGCCAGATT 59.485 43.478 0.00 0.00 0.00 2.40
609 614 3.099141 CCCCTTGTATTTTGTGCCAGAT 58.901 45.455 0.00 0.00 0.00 2.90
610 615 2.524306 CCCCTTGTATTTTGTGCCAGA 58.476 47.619 0.00 0.00 0.00 3.86
611 616 1.550072 CCCCCTTGTATTTTGTGCCAG 59.450 52.381 0.00 0.00 0.00 4.85
612 617 1.638529 CCCCCTTGTATTTTGTGCCA 58.361 50.000 0.00 0.00 0.00 4.92
613 618 0.249120 GCCCCCTTGTATTTTGTGCC 59.751 55.000 0.00 0.00 0.00 5.01
614 619 0.249120 GGCCCCCTTGTATTTTGTGC 59.751 55.000 0.00 0.00 0.00 4.57
615 620 1.937191 AGGCCCCCTTGTATTTTGTG 58.063 50.000 0.00 0.00 0.00 3.33
616 621 3.837399 TTAGGCCCCCTTGTATTTTGT 57.163 42.857 0.00 0.00 34.61 2.83
617 622 6.407639 GGTTTATTAGGCCCCCTTGTATTTTG 60.408 42.308 0.00 0.00 34.61 2.44
618 623 5.664006 GGTTTATTAGGCCCCCTTGTATTTT 59.336 40.000 0.00 0.00 34.61 1.82
619 624 5.042903 AGGTTTATTAGGCCCCCTTGTATTT 60.043 40.000 0.00 0.00 34.61 1.40
620 625 4.484645 AGGTTTATTAGGCCCCCTTGTATT 59.515 41.667 0.00 0.00 34.61 1.89
621 626 4.059461 AGGTTTATTAGGCCCCCTTGTAT 58.941 43.478 0.00 0.00 34.61 2.29
622 627 3.203487 CAGGTTTATTAGGCCCCCTTGTA 59.797 47.826 0.00 0.00 34.61 2.41
623 628 2.024369 CAGGTTTATTAGGCCCCCTTGT 60.024 50.000 0.00 0.00 34.61 3.16
624 629 2.666317 CAGGTTTATTAGGCCCCCTTG 58.334 52.381 0.00 0.00 34.61 3.61
625 630 1.573857 CCAGGTTTATTAGGCCCCCTT 59.426 52.381 0.00 0.00 34.61 3.95
626 631 1.231963 CCAGGTTTATTAGGCCCCCT 58.768 55.000 0.00 0.00 37.71 4.79
627 632 1.133575 GTCCAGGTTTATTAGGCCCCC 60.134 57.143 0.00 0.00 0.00 5.40
628 633 1.567175 TGTCCAGGTTTATTAGGCCCC 59.433 52.381 0.00 0.00 0.00 5.80
629 634 2.508300 TCTGTCCAGGTTTATTAGGCCC 59.492 50.000 0.00 0.00 0.00 5.80
630 635 3.433740 CCTCTGTCCAGGTTTATTAGGCC 60.434 52.174 0.00 0.00 0.00 5.19
631 636 3.200165 ACCTCTGTCCAGGTTTATTAGGC 59.800 47.826 0.00 0.00 45.24 3.93
641 646 2.289694 ACGAATGAAACCTCTGTCCAGG 60.290 50.000 0.00 0.00 39.80 4.45
642 647 2.996621 GACGAATGAAACCTCTGTCCAG 59.003 50.000 0.00 0.00 0.00 3.86
643 648 2.609491 CGACGAATGAAACCTCTGTCCA 60.609 50.000 0.00 0.00 0.00 4.02
644 649 1.993370 CGACGAATGAAACCTCTGTCC 59.007 52.381 0.00 0.00 0.00 4.02
645 650 1.993370 CCGACGAATGAAACCTCTGTC 59.007 52.381 0.00 0.00 0.00 3.51
646 651 1.343465 ACCGACGAATGAAACCTCTGT 59.657 47.619 0.00 0.00 0.00 3.41
647 652 1.993370 GACCGACGAATGAAACCTCTG 59.007 52.381 0.00 0.00 0.00 3.35
648 653 1.402456 CGACCGACGAATGAAACCTCT 60.402 52.381 0.00 0.00 45.77 3.69
649 654 0.989890 CGACCGACGAATGAAACCTC 59.010 55.000 0.00 0.00 45.77 3.85
650 655 1.012486 GCGACCGACGAATGAAACCT 61.012 55.000 0.00 0.00 45.77 3.50
651 656 1.418755 GCGACCGACGAATGAAACC 59.581 57.895 0.00 0.00 45.77 3.27
736 749 8.191534 AGGCTATTTATATAGTCTTGTTCGGT 57.808 34.615 1.85 0.00 44.90 4.69
774 787 0.605589 AGAAAGGTGAGGCAGAGACG 59.394 55.000 0.00 0.00 0.00 4.18
894 907 2.056481 GACGGCGCGTAGACTACCAT 62.056 60.000 6.90 0.00 41.37 3.55
895 908 2.747460 ACGGCGCGTAGACTACCA 60.747 61.111 6.90 0.00 38.73 3.25
1267 1807 0.180406 AACAGTCGACTTGCAGGGTT 59.820 50.000 17.26 12.92 0.00 4.11
1305 1845 3.246699 CAGTTGTCCAAACATTACGTCGT 59.753 43.478 2.21 2.21 34.73 4.34
1394 2140 9.777297 AGGTGCATGTAAAGAAAAATAATTGTT 57.223 25.926 0.00 0.00 0.00 2.83
1506 2254 1.511613 TCCTATGGAGGGCTTCTTGG 58.488 55.000 0.00 0.00 43.94 3.61
1545 2300 3.099141 CAAGGGTTAAGGCACAATCCAT 58.901 45.455 3.58 0.00 0.00 3.41
1550 2305 2.432510 CCAAACAAGGGTTAAGGCACAA 59.567 45.455 0.00 0.00 35.82 3.33
1697 2464 3.118629 TCTGTTCGAAGATTCCATGGAGG 60.119 47.826 15.53 1.93 35.04 4.30
1751 2521 2.149383 AGCAGGCCTGACAGAACCA 61.149 57.895 37.21 0.00 0.00 3.67
1754 2524 2.033141 GCAGCAGGCCTGACAGAA 59.967 61.111 37.21 0.00 44.64 3.02
1780 2550 3.464720 TCTCACACTCTTGAGGAGGAT 57.535 47.619 0.00 0.00 45.83 3.24
1787 2919 3.801638 GCTGCTTCTTCTCACACTCTTGA 60.802 47.826 0.00 0.00 0.00 3.02
1984 3122 6.649041 ATAAATAAGGATATGCAGCTCCCT 57.351 37.500 12.51 4.17 31.49 4.20
2140 3284 6.398918 TGCTCAGAAACTACTAATTGTCTCC 58.601 40.000 0.00 0.00 0.00 3.71
2163 3307 6.710692 TGTGCTCGTGCTATGAAATATATG 57.289 37.500 11.19 0.00 40.48 1.78
2243 3390 5.710513 ACATGTGCACTTGTACAATCAAT 57.289 34.783 30.59 8.41 43.49 2.57
2258 3405 6.276091 TCTGTATTCAGAGATGTACATGTGC 58.724 40.000 14.43 8.01 44.58 4.57
2450 3608 6.456988 GGCAAATACTGAAGGACAACTATTCG 60.457 42.308 0.00 0.00 0.00 3.34
2462 3620 7.600752 GGTATTAGAGCTAGGCAAATACTGAAG 59.399 40.741 15.14 0.00 34.48 3.02
2563 3725 4.141711 GGAGGATAGCACATCCAACAACTA 60.142 45.833 17.04 0.00 40.01 2.24
2816 3986 4.726416 CATGAACAAAAAGTAGCGCATCT 58.274 39.130 11.47 4.02 0.00 2.90
2840 4010 6.565060 GCAGACATTAACACAAATACACGTGA 60.565 38.462 25.01 6.34 36.91 4.35
2995 4168 2.015587 CCAAGAGAGAAGCTCCAATGC 58.984 52.381 0.00 0.00 45.10 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.