Multiple sequence alignment - TraesCS6A01G209400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G209400 chr6A 100.000 3235 0 0 1 3235 378455246 378452012 0.000000e+00 5975.0
1 TraesCS6A01G209400 chr6A 98.068 1708 29 3 1528 3235 378441655 378439952 0.000000e+00 2968.0
2 TraesCS6A01G209400 chr6A 97.834 1708 33 1 1528 3235 378429599 378427896 0.000000e+00 2946.0
3 TraesCS6A01G209400 chr6A 93.608 1893 115 2 1 1888 378423081 378421190 0.000000e+00 2820.0
4 TraesCS6A01G209400 chr6A 96.107 745 26 2 1880 2623 378399543 378398801 0.000000e+00 1212.0
5 TraesCS6A01G209400 chr6A 91.599 619 45 4 2620 3235 332700012 332699398 0.000000e+00 848.0
6 TraesCS6A01G209400 chr6A 92.085 518 40 1 989 1505 253447216 253446699 0.000000e+00 728.0
7 TraesCS6A01G209400 chr6A 91.892 370 29 1 1137 1505 253511215 253510846 1.720000e-142 516.0
8 TraesCS6A01G209400 chr6A 78.129 887 123 53 1943 2808 55925936 55925100 6.230000e-137 497.0
9 TraesCS6A01G209400 chr6A 74.180 701 110 53 1943 2622 55910295 55909645 3.250000e-55 226.0
10 TraesCS6A01G209400 chr6A 97.826 46 1 0 1768 1813 150831837 150831792 2.680000e-11 80.5
11 TraesCS6A01G209400 chr4A 91.346 1872 146 11 1 1859 395980456 395982324 0.000000e+00 2545.0
12 TraesCS6A01G209400 chr4A 92.344 627 43 5 2611 3235 179168320 179167697 0.000000e+00 887.0
13 TraesCS6A01G209400 chr4A 91.547 627 50 3 2612 3235 365185091 365184465 0.000000e+00 861.0
14 TraesCS6A01G209400 chr4A 91.083 628 48 8 2612 3235 247520889 247521512 0.000000e+00 843.0
15 TraesCS6A01G209400 chr4A 92.278 518 38 2 989 1505 266989444 266989960 0.000000e+00 734.0
16 TraesCS6A01G209400 chr4A 92.842 475 33 1 772 1246 265681490 265681963 0.000000e+00 688.0
17 TraesCS6A01G209400 chr4A 90.874 515 44 3 992 1505 561080230 561079718 0.000000e+00 688.0
18 TraesCS6A01G209400 chr4A 94.686 414 21 1 1507 1920 506057434 506057846 2.720000e-180 641.0
19 TraesCS6A01G209400 chr4A 93.510 416 26 1 1507 1922 506068010 506068424 4.590000e-173 617.0
20 TraesCS6A01G209400 chr4A 77.720 965 132 52 1901 2829 254562008 254562925 6.190000e-142 514.0
21 TraesCS6A01G209400 chr4A 92.625 339 24 1 1584 1922 506108784 506109121 1.350000e-133 486.0
22 TraesCS6A01G209400 chr4A 75.858 758 102 55 1901 2622 254570844 254571556 8.720000e-81 311.0
23 TraesCS6A01G209400 chr4A 78.731 268 31 15 1943 2207 200240239 200240483 4.320000e-34 156.0
24 TraesCS6A01G209400 chr4A 85.185 135 19 1 1726 1859 401231046 401230912 1.570000e-28 137.0
25 TraesCS6A01G209400 chr1A 86.709 1264 137 20 1 1246 346114877 346113627 0.000000e+00 1375.0
26 TraesCS6A01G209400 chr1A 86.672 1223 141 18 34 1246 346158189 346156979 0.000000e+00 1336.0
27 TraesCS6A01G209400 chr1A 85.692 1265 138 28 1 1237 372598100 372599349 0.000000e+00 1293.0
28 TraesCS6A01G209400 chr1A 83.468 865 116 20 2345 3196 103728949 103728099 0.000000e+00 780.0
29 TraesCS6A01G209400 chr1A 77.627 885 132 48 1943 2805 51464598 51465438 8.120000e-131 477.0
30 TraesCS6A01G209400 chr1A 87.719 399 46 3 1091 1487 322626155 322626552 2.270000e-126 462.0
31 TraesCS6A01G209400 chr1A 75.072 698 108 47 1943 2622 368460302 368460951 6.880000e-67 265.0
32 TraesCS6A01G209400 chr1A 74.682 707 110 57 1943 2623 51491656 51492319 1.930000e-62 250.0
33 TraesCS6A01G209400 chr1A 74.348 729 113 50 1916 2622 168440285 168440961 3.220000e-60 243.0
34 TraesCS6A01G209400 chr1A 95.000 60 3 0 1948 2007 173779790 173779731 9.550000e-16 95.3
35 TraesCS6A01G209400 chr7A 93.471 919 60 0 941 1859 101623316 101622398 0.000000e+00 1365.0
36 TraesCS6A01G209400 chr7A 83.281 1280 150 42 1 1246 356760935 356762184 0.000000e+00 1120.0
37 TraesCS6A01G209400 chr7A 80.838 1122 164 49 2098 3196 237440874 237439781 0.000000e+00 833.0
38 TraesCS6A01G209400 chr7A 83.333 870 108 29 2359 3212 207566969 207566121 0.000000e+00 769.0
39 TraesCS6A01G209400 chr7A 85.125 800 57 34 2060 2829 426514544 426513777 0.000000e+00 761.0
40 TraesCS6A01G209400 chr7A 82.549 871 115 27 2351 3205 524262259 524261410 0.000000e+00 732.0
41 TraesCS6A01G209400 chr7A 82.212 877 110 34 2377 3235 532048639 532047791 0.000000e+00 713.0
42 TraesCS6A01G209400 chr7A 90.661 514 44 4 989 1501 445550515 445551025 0.000000e+00 680.0
43 TraesCS6A01G209400 chr7A 83.953 592 46 27 2060 2622 426476857 426476286 3.700000e-144 521.0
44 TraesCS6A01G209400 chr7A 81.975 638 76 34 2004 2627 338700218 338700830 3.720000e-139 505.0
45 TraesCS6A01G209400 chr3A 88.562 918 90 14 1 908 625479452 625480364 0.000000e+00 1099.0
46 TraesCS6A01G209400 chr3A 82.422 1280 162 40 1 1246 642756884 642755634 0.000000e+00 1059.0
47 TraesCS6A01G209400 chr3A 86.616 919 85 23 1 908 625487221 625488112 0.000000e+00 981.0
48 TraesCS6A01G209400 chr3A 81.787 873 128 25 2345 3206 539783073 539783925 0.000000e+00 702.0
49 TraesCS6A01G209400 chr5A 88.575 919 83 15 1 908 457746882 457747789 0.000000e+00 1096.0
50 TraesCS6A01G209400 chr5A 84.211 893 111 21 1 876 108743212 108744091 0.000000e+00 841.0
51 TraesCS6A01G209400 chr5A 87.316 678 65 12 1 666 467654889 467655557 0.000000e+00 756.0
52 TraesCS6A01G209400 chr5A 74.369 753 104 63 1916 2623 145272159 145272867 4.170000e-59 239.0
53 TraesCS6A01G209400 chr5A 79.058 191 28 11 1752 1936 347065422 347065238 1.580000e-23 121.0
54 TraesCS6A01G209400 chr2A 82.551 1278 164 37 1 1246 415207331 415206081 0.000000e+00 1070.0
55 TraesCS6A01G209400 chr2A 86.754 989 92 20 1 978 315565995 315566955 0.000000e+00 1064.0
56 TraesCS6A01G209400 chr2A 82.518 1247 154 47 1 1194 309404526 309403291 0.000000e+00 1037.0
57 TraesCS6A01G209400 chr2A 79.369 1110 171 47 2108 3195 357002429 357003502 0.000000e+00 728.0
58 TraesCS6A01G209400 chr2A 83.312 791 88 37 2062 2829 124748913 124748144 0.000000e+00 689.0
59 TraesCS6A01G209400 chr2A 87.104 442 37 11 2060 2499 315568266 315568689 1.750000e-132 483.0
60 TraesCS6A01G209400 chr2A 78.088 680 94 44 1875 2535 258718227 258718870 2.360000e-101 379.0
61 TraesCS6A01G209400 chr2A 85.052 194 21 4 1496 1681 581794536 581794729 1.180000e-44 191.0
62 TraesCS6A01G209400 chr2A 96.429 112 3 1 1853 1964 120941075 120940965 1.980000e-42 183.0
63 TraesCS6A01G209400 chr2A 95.536 112 4 1 1853 1964 120923445 120923335 9.220000e-41 178.0
64 TraesCS6A01G209400 chrUn 79.639 776 110 36 2079 2829 119024872 119024120 6.190000e-142 514.0
65 TraesCS6A01G209400 chrUn 94.406 143 7 1 1507 1649 74767184 74767325 5.430000e-53 219.0
66 TraesCS6A01G209400 chrUn 94.231 52 3 0 1880 1931 201777588 201777537 2.680000e-11 80.5
67 TraesCS6A01G209400 chrUn 97.561 41 1 0 1885 1925 295178038 295177998 1.610000e-08 71.3
68 TraesCS6A01G209400 chrUn 95.000 40 2 0 1892 1931 292417106 292417067 2.690000e-06 63.9
69 TraesCS6A01G209400 chrUn 97.297 37 1 0 1892 1928 332668118 332668154 2.690000e-06 63.9
70 TraesCS6A01G209400 chr6B 79.966 589 93 24 2047 2626 366192550 366191978 8.350000e-111 411.0
71 TraesCS6A01G209400 chr7D 91.566 83 5 2 1845 1926 491998140 491998221 2.640000e-21 113.0
72 TraesCS6A01G209400 chr7D 90.361 83 6 2 1845 1926 192065282 192065201 1.230000e-19 108.0
73 TraesCS6A01G209400 chr7D 90.789 76 4 2 1863 1936 182009714 182009640 7.390000e-17 99.0
74 TraesCS6A01G209400 chr2D 90.361 83 6 2 1845 1926 249863967 249863886 1.230000e-19 108.0
75 TraesCS6A01G209400 chr2D 90.361 83 6 2 1845 1926 309629280 309629199 1.230000e-19 108.0
76 TraesCS6A01G209400 chr2D 89.157 83 7 2 1845 1926 285360799 285360880 5.710000e-18 102.0
77 TraesCS6A01G209400 chr2D 87.952 83 8 2 1845 1926 249856054 249855973 2.660000e-16 97.1
78 TraesCS6A01G209400 chr6D 91.525 59 4 1 1882 1939 170845666 170845608 2.680000e-11 80.5
79 TraesCS6A01G209400 chr6D 91.525 59 4 1 1882 1939 170853501 170853443 2.680000e-11 80.5
80 TraesCS6A01G209400 chr4D 86.486 74 9 1 1853 1925 191323846 191323919 2.680000e-11 80.5
81 TraesCS6A01G209400 chr4D 97.826 46 1 0 1882 1927 252065615 252065570 2.680000e-11 80.5
82 TraesCS6A01G209400 chr4D 91.525 59 4 1 1882 1939 261708729 261708671 2.680000e-11 80.5
83 TraesCS6A01G209400 chr4D 91.525 59 4 1 1882 1939 406272752 406272810 2.680000e-11 80.5
84 TraesCS6A01G209400 chr4D 91.525 59 4 1 1882 1939 421017224 421017282 2.680000e-11 80.5
85 TraesCS6A01G209400 chr4D 92.727 55 1 3 1873 1926 213338543 213338595 3.460000e-10 76.8
86 TraesCS6A01G209400 chr4D 89.831 59 5 1 1882 1939 406264592 406264650 1.240000e-09 75.0
87 TraesCS6A01G209400 chr1D 91.525 59 4 1 1882 1939 159396212 159396154 2.680000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G209400 chr6A 378452012 378455246 3234 True 5975.0 5975 100.000 1 3235 1 chr6A.!!$R11 3234
1 TraesCS6A01G209400 chr6A 378439952 378441655 1703 True 2968.0 2968 98.068 1528 3235 1 chr6A.!!$R10 1707
2 TraesCS6A01G209400 chr6A 378427896 378429599 1703 True 2946.0 2946 97.834 1528 3235 1 chr6A.!!$R9 1707
3 TraesCS6A01G209400 chr6A 378421190 378423081 1891 True 2820.0 2820 93.608 1 1888 1 chr6A.!!$R8 1887
4 TraesCS6A01G209400 chr6A 378398801 378399543 742 True 1212.0 1212 96.107 1880 2623 1 chr6A.!!$R7 743
5 TraesCS6A01G209400 chr6A 332699398 332700012 614 True 848.0 848 91.599 2620 3235 1 chr6A.!!$R6 615
6 TraesCS6A01G209400 chr6A 253446699 253447216 517 True 728.0 728 92.085 989 1505 1 chr6A.!!$R4 516
7 TraesCS6A01G209400 chr6A 55925100 55925936 836 True 497.0 497 78.129 1943 2808 1 chr6A.!!$R2 865
8 TraesCS6A01G209400 chr6A 55909645 55910295 650 True 226.0 226 74.180 1943 2622 1 chr6A.!!$R1 679
9 TraesCS6A01G209400 chr4A 395980456 395982324 1868 False 2545.0 2545 91.346 1 1859 1 chr4A.!!$F7 1858
10 TraesCS6A01G209400 chr4A 179167697 179168320 623 True 887.0 887 92.344 2611 3235 1 chr4A.!!$R1 624
11 TraesCS6A01G209400 chr4A 365184465 365185091 626 True 861.0 861 91.547 2612 3235 1 chr4A.!!$R2 623
12 TraesCS6A01G209400 chr4A 247520889 247521512 623 False 843.0 843 91.083 2612 3235 1 chr4A.!!$F2 623
13 TraesCS6A01G209400 chr4A 266989444 266989960 516 False 734.0 734 92.278 989 1505 1 chr4A.!!$F6 516
14 TraesCS6A01G209400 chr4A 561079718 561080230 512 True 688.0 688 90.874 992 1505 1 chr4A.!!$R4 513
15 TraesCS6A01G209400 chr4A 254562008 254562925 917 False 514.0 514 77.720 1901 2829 1 chr4A.!!$F3 928
16 TraesCS6A01G209400 chr4A 254570844 254571556 712 False 311.0 311 75.858 1901 2622 1 chr4A.!!$F4 721
17 TraesCS6A01G209400 chr1A 346113627 346114877 1250 True 1375.0 1375 86.709 1 1246 1 chr1A.!!$R3 1245
18 TraesCS6A01G209400 chr1A 346156979 346158189 1210 True 1336.0 1336 86.672 34 1246 1 chr1A.!!$R4 1212
19 TraesCS6A01G209400 chr1A 372598100 372599349 1249 False 1293.0 1293 85.692 1 1237 1 chr1A.!!$F6 1236
20 TraesCS6A01G209400 chr1A 103728099 103728949 850 True 780.0 780 83.468 2345 3196 1 chr1A.!!$R1 851
21 TraesCS6A01G209400 chr1A 51464598 51465438 840 False 477.0 477 77.627 1943 2805 1 chr1A.!!$F1 862
22 TraesCS6A01G209400 chr1A 368460302 368460951 649 False 265.0 265 75.072 1943 2622 1 chr1A.!!$F5 679
23 TraesCS6A01G209400 chr1A 51491656 51492319 663 False 250.0 250 74.682 1943 2623 1 chr1A.!!$F2 680
24 TraesCS6A01G209400 chr1A 168440285 168440961 676 False 243.0 243 74.348 1916 2622 1 chr1A.!!$F3 706
25 TraesCS6A01G209400 chr7A 101622398 101623316 918 True 1365.0 1365 93.471 941 1859 1 chr7A.!!$R1 918
26 TraesCS6A01G209400 chr7A 356760935 356762184 1249 False 1120.0 1120 83.281 1 1246 1 chr7A.!!$F2 1245
27 TraesCS6A01G209400 chr7A 237439781 237440874 1093 True 833.0 833 80.838 2098 3196 1 chr7A.!!$R3 1098
28 TraesCS6A01G209400 chr7A 207566121 207566969 848 True 769.0 769 83.333 2359 3212 1 chr7A.!!$R2 853
29 TraesCS6A01G209400 chr7A 426513777 426514544 767 True 761.0 761 85.125 2060 2829 1 chr7A.!!$R5 769
30 TraesCS6A01G209400 chr7A 524261410 524262259 849 True 732.0 732 82.549 2351 3205 1 chr7A.!!$R6 854
31 TraesCS6A01G209400 chr7A 532047791 532048639 848 True 713.0 713 82.212 2377 3235 1 chr7A.!!$R7 858
32 TraesCS6A01G209400 chr7A 445550515 445551025 510 False 680.0 680 90.661 989 1501 1 chr7A.!!$F3 512
33 TraesCS6A01G209400 chr7A 426476286 426476857 571 True 521.0 521 83.953 2060 2622 1 chr7A.!!$R4 562
34 TraesCS6A01G209400 chr7A 338700218 338700830 612 False 505.0 505 81.975 2004 2627 1 chr7A.!!$F1 623
35 TraesCS6A01G209400 chr3A 625479452 625480364 912 False 1099.0 1099 88.562 1 908 1 chr3A.!!$F2 907
36 TraesCS6A01G209400 chr3A 642755634 642756884 1250 True 1059.0 1059 82.422 1 1246 1 chr3A.!!$R1 1245
37 TraesCS6A01G209400 chr3A 625487221 625488112 891 False 981.0 981 86.616 1 908 1 chr3A.!!$F3 907
38 TraesCS6A01G209400 chr3A 539783073 539783925 852 False 702.0 702 81.787 2345 3206 1 chr3A.!!$F1 861
39 TraesCS6A01G209400 chr5A 457746882 457747789 907 False 1096.0 1096 88.575 1 908 1 chr5A.!!$F3 907
40 TraesCS6A01G209400 chr5A 108743212 108744091 879 False 841.0 841 84.211 1 876 1 chr5A.!!$F1 875
41 TraesCS6A01G209400 chr5A 467654889 467655557 668 False 756.0 756 87.316 1 666 1 chr5A.!!$F4 665
42 TraesCS6A01G209400 chr5A 145272159 145272867 708 False 239.0 239 74.369 1916 2623 1 chr5A.!!$F2 707
43 TraesCS6A01G209400 chr2A 415206081 415207331 1250 True 1070.0 1070 82.551 1 1246 1 chr2A.!!$R5 1245
44 TraesCS6A01G209400 chr2A 309403291 309404526 1235 True 1037.0 1037 82.518 1 1194 1 chr2A.!!$R4 1193
45 TraesCS6A01G209400 chr2A 315565995 315568689 2694 False 773.5 1064 86.929 1 2499 2 chr2A.!!$F4 2498
46 TraesCS6A01G209400 chr2A 357002429 357003502 1073 False 728.0 728 79.369 2108 3195 1 chr2A.!!$F2 1087
47 TraesCS6A01G209400 chr2A 124748144 124748913 769 True 689.0 689 83.312 2062 2829 1 chr2A.!!$R3 767
48 TraesCS6A01G209400 chr2A 258718227 258718870 643 False 379.0 379 78.088 1875 2535 1 chr2A.!!$F1 660
49 TraesCS6A01G209400 chrUn 119024120 119024872 752 True 514.0 514 79.639 2079 2829 1 chrUn.!!$R1 750
50 TraesCS6A01G209400 chr6B 366191978 366192550 572 True 411.0 411 79.966 2047 2626 1 chr6B.!!$R1 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
594 641 0.670546 AAATCGGACACGGTGCAGAG 60.671 55.0 8.3 0.0 41.39 3.35 F
1333 1670 0.250295 CTTTCGGAGACAACCCAGCA 60.250 55.0 0.0 0.0 34.32 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1452 1790 0.178998 CTGGCCCCTCCTCATTCATG 60.179 60.000 0.00 0.0 35.26 3.07 R
2601 3411 4.011517 GACGCCCCAAGACCGGAA 62.012 66.667 9.46 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
230 238 8.512138 CATTTAGGAAAGTTTAAATGAGGTCGT 58.488 33.333 13.57 0.00 44.34 4.34
381 402 5.711506 TGTTGCCATGAACAAGATATGAAGT 59.288 36.000 0.00 0.00 32.84 3.01
397 418 3.006940 TGAAGTATTTGTCATCGTGGCC 58.993 45.455 0.00 0.00 0.00 5.36
530 563 4.003788 AAGACGGTGGGGTGCTCG 62.004 66.667 0.00 0.00 0.00 5.03
574 620 1.003580 AGTGGCATGGAAACGAGTGAT 59.996 47.619 0.00 0.00 0.00 3.06
594 641 0.670546 AAATCGGACACGGTGCAGAG 60.671 55.000 8.30 0.00 41.39 3.35
666 716 4.409574 TCGGGGTTATACCTTTGAAGCATA 59.590 41.667 0.00 0.00 38.64 3.14
705 767 3.510388 TGCAGAGGAAGTAGATGTTCG 57.490 47.619 0.00 0.00 0.00 3.95
756 831 2.416260 GGTCCTCGGCGATGGTAC 59.584 66.667 11.27 13.01 0.00 3.34
784 859 2.202824 CGATCTTGGCGGCGGTAA 60.203 61.111 9.78 0.00 0.00 2.85
917 995 1.146982 AGGGGTACTTGGCATTTGTGT 59.853 47.619 0.00 0.00 0.00 3.72
1183 1520 1.172180 CCCAAAAACGCTCCTGCTCA 61.172 55.000 0.00 0.00 36.97 4.26
1305 1642 1.675641 GGCCTTGGCAGTGATTCGT 60.676 57.895 14.04 0.00 0.00 3.85
1333 1670 0.250295 CTTTCGGAGACAACCCAGCA 60.250 55.000 0.00 0.00 34.32 4.41
1354 1692 2.176273 GGCATGCTGCGATCGAAGT 61.176 57.895 23.91 2.39 46.21 3.01
1361 1699 0.807275 CTGCGATCGAAGTGCATGGA 60.807 55.000 21.57 0.00 38.07 3.41
1501 1938 2.968697 GGGTTCAAACGTCGCGGT 60.969 61.111 6.13 0.00 0.00 5.68
1604 2091 2.281484 GGTTGCAGAAGGTGGCGA 60.281 61.111 0.00 0.00 0.00 5.54
1734 2334 4.722700 GGCAGCCCGAGCAAGGAA 62.723 66.667 0.00 0.00 43.56 3.36
2301 3038 8.859090 AGTGATGAAAGAATTTATGGACAACAA 58.141 29.630 0.00 0.00 39.27 2.83
2601 3411 3.947612 ATCATGGAAGGCATCTGAAGT 57.052 42.857 0.00 0.00 0.00 3.01
3196 4056 2.438021 AGGTGAACTTCTGCCACTAACA 59.562 45.455 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
244 252 6.857848 TGCATATGGGGATTTACCAGAATTA 58.142 36.000 4.56 0.0 42.15 1.40
381 402 3.365465 CGTTTTGGCCACGATGACAAATA 60.365 43.478 3.88 0.0 40.20 1.40
397 418 1.566404 GTGGCACCCTTTTCGTTTTG 58.434 50.000 6.29 0.0 0.00 2.44
574 620 0.604073 TCTGCACCGTGTCCGATTTA 59.396 50.000 0.00 0.0 35.63 1.40
705 767 0.038892 TTCCACTACGACTGTTCCGC 60.039 55.000 0.00 0.0 0.00 5.54
712 774 5.259632 AGTACCATTACTTCCACTACGACT 58.740 41.667 0.00 0.0 34.66 4.18
756 831 2.474816 GCCAAGATCGCTAAGTACCAG 58.525 52.381 0.00 0.0 0.00 4.00
784 859 3.375299 GTGCGCCTAAGAACTTGAATGAT 59.625 43.478 4.18 0.0 0.00 2.45
858 936 3.000727 CAAGTACCATCGACCCTCAAAC 58.999 50.000 0.00 0.0 0.00 2.93
895 973 2.752903 CACAAATGCCAAGTACCCCTAC 59.247 50.000 0.00 0.0 0.00 3.18
1183 1520 0.406361 ACCGAGACAGAGACCTCCTT 59.594 55.000 0.00 0.0 0.00 3.36
1305 1642 2.612000 TGTCTCCGAAAGTCCCCTTTA 58.388 47.619 0.00 0.0 40.98 1.85
1354 1692 0.106708 GCGGGTAGAAGATCCATGCA 59.893 55.000 0.00 0.0 0.00 3.96
1361 1699 1.906574 TGTTCCTTGCGGGTAGAAGAT 59.093 47.619 0.00 0.0 36.25 2.40
1452 1790 0.178998 CTGGCCCCTCCTCATTCATG 60.179 60.000 0.00 0.0 35.26 3.07
1458 1796 4.421554 CCTCCTGGCCCCTCCTCA 62.422 72.222 0.00 0.0 35.26 3.86
1501 1938 4.082523 CCCGCTTCCAGCCTTCGA 62.083 66.667 0.00 0.0 38.18 3.71
2301 3038 6.950842 TGTTATCTCACATCTTGACCTCAAT 58.049 36.000 0.00 0.0 35.02 2.57
2601 3411 4.011517 GACGCCCCAAGACCGGAA 62.012 66.667 9.46 0.0 0.00 4.30
2856 3695 6.015940 CCTTACCAAGTCTTGCATCTCTTTTT 60.016 38.462 7.09 0.0 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.