Multiple sequence alignment - TraesCS6A01G209100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G209100 chr6A 100.000 5953 0 0 1 5953 378165774 378171726 0.000000e+00 10994.0
1 TraesCS6A01G209100 chr2A 95.318 1837 70 10 2926 4747 199108852 199107017 0.000000e+00 2902.0
2 TraesCS6A01G209100 chr2A 95.556 45 1 1 1135 1179 1525938 1525981 2.980000e-08 71.3
3 TraesCS6A01G209100 chr7D 90.760 1829 143 18 2926 4741 95295837 95294022 0.000000e+00 2418.0
4 TraesCS6A01G209100 chr7D 90.555 667 48 10 1806 2464 589200115 589199456 0.000000e+00 869.0
5 TraesCS6A01G209100 chr7D 90.555 667 48 10 1806 2464 589204371 589205030 0.000000e+00 869.0
6 TraesCS6A01G209100 chr7D 86.898 374 44 4 3 373 503852491 503852120 1.190000e-111 414.0
7 TraesCS6A01G209100 chr7D 85.255 373 49 4 3 372 116445825 116445456 4.350000e-101 379.0
8 TraesCS6A01G209100 chr7D 79.630 324 46 14 3153 3464 68448711 68448396 1.300000e-51 215.0
9 TraesCS6A01G209100 chr7D 94.000 50 2 1 1134 1182 396443717 396443766 2.300000e-09 75.0
10 TraesCS6A01G209100 chr6D 93.149 1124 45 9 4808 5920 266780383 266781485 0.000000e+00 1620.0
11 TraesCS6A01G209100 chr6D 95.006 861 38 3 2065 2922 266779457 266780315 0.000000e+00 1347.0
12 TraesCS6A01G209100 chr6D 91.695 891 44 14 1191 2061 266778544 266779424 0.000000e+00 1208.0
13 TraesCS6A01G209100 chr6D 90.945 751 41 8 376 1123 266777817 266778543 0.000000e+00 985.0
14 TraesCS6A01G209100 chr6D 85.484 372 50 3 3 373 405679050 405678682 9.360000e-103 385.0
15 TraesCS6A01G209100 chr6B 94.792 864 40 5 2062 2922 414334988 414335849 0.000000e+00 1341.0
16 TraesCS6A01G209100 chr6B 92.888 914 33 15 1173 2061 414333994 414334900 0.000000e+00 1299.0
17 TraesCS6A01G209100 chr6B 91.623 764 49 10 376 1129 414333235 414333993 0.000000e+00 1042.0
18 TraesCS6A01G209100 chr6B 89.332 853 50 15 5080 5915 414336239 414337067 0.000000e+00 1033.0
19 TraesCS6A01G209100 chr6B 89.779 362 16 9 4744 5086 414335841 414336200 1.520000e-120 444.0
20 TraesCS6A01G209100 chr6B 84.656 378 48 7 3 374 101457406 101457779 9.430000e-98 368.0
21 TraesCS6A01G209100 chr6B 84.462 251 34 5 3149 3397 642947632 642947879 5.960000e-60 243.0
22 TraesCS6A01G209100 chr2D 86.775 1051 120 16 3620 4665 611166866 611165830 0.000000e+00 1153.0
23 TraesCS6A01G209100 chr2D 90.448 670 48 11 1806 2464 181603251 181602587 0.000000e+00 869.0
24 TraesCS6A01G209100 chr2D 78.261 322 52 15 3153 3464 631919046 631918733 2.190000e-44 191.0
25 TraesCS6A01G209100 chr4D 85.472 1122 128 30 3649 4748 359848716 359847608 0.000000e+00 1136.0
26 TraesCS6A01G209100 chr5B 85.632 1044 132 13 3620 4659 371957772 371958801 0.000000e+00 1081.0
27 TraesCS6A01G209100 chr5B 83.868 1153 159 23 3602 4744 549171147 549170012 0.000000e+00 1074.0
28 TraesCS6A01G209100 chr5B 80.337 356 48 9 3047 3401 517763010 517762676 3.560000e-62 250.0
29 TraesCS6A01G209100 chr5B 85.915 213 29 1 3161 3373 216838066 216837855 6.000000e-55 226.0
30 TraesCS6A01G209100 chr1B 84.921 1081 143 19 3668 4741 555947243 555948310 0.000000e+00 1075.0
31 TraesCS6A01G209100 chr3A 85.867 934 111 17 3635 4561 655859055 655859974 0.000000e+00 974.0
32 TraesCS6A01G209100 chr3A 95.833 48 2 0 1135 1182 480969531 480969578 1.780000e-10 78.7
33 TraesCS6A01G209100 chr5D 85.124 968 114 19 3602 4556 560526580 560525630 0.000000e+00 963.0
34 TraesCS6A01G209100 chr5D 91.004 667 47 9 1806 2464 367506088 367505427 0.000000e+00 887.0
35 TraesCS6A01G209100 chr5D 90.433 669 49 10 1806 2464 437148702 437149365 0.000000e+00 867.0
36 TraesCS6A01G209100 chr5D 84.197 386 51 9 3 382 46036160 46035779 3.390000e-97 366.0
37 TraesCS6A01G209100 chr1D 91.793 463 29 6 2010 2464 435736359 435736820 2.340000e-178 636.0
38 TraesCS6A01G209100 chr1D 86.595 373 39 5 6 376 2501197 2500834 9.290000e-108 401.0
39 TraesCS6A01G209100 chr1D 84.043 376 53 7 3 376 412166580 412166950 7.340000e-94 355.0
40 TraesCS6A01G209100 chr1D 86.111 72 7 3 4683 4752 410253024 410252954 2.300000e-09 75.0
41 TraesCS6A01G209100 chr7B 90.212 378 33 3 3 377 424523914 424524290 1.930000e-134 490.0
42 TraesCS6A01G209100 chr3B 88.827 358 38 2 8 365 406744147 406744502 7.080000e-119 438.0
43 TraesCS6A01G209100 chr3B 93.878 49 3 0 1127 1175 652500149 652500101 2.300000e-09 75.0
44 TraesCS6A01G209100 chr2B 81.967 366 44 13 3135 3487 544760226 544760582 2.100000e-74 291.0
45 TraesCS6A01G209100 chr2B 93.750 48 3 0 1134 1181 32945995 32946042 8.280000e-09 73.1
46 TraesCS6A01G209100 chr2B 97.619 42 1 0 1134 1175 69375728 69375687 8.280000e-09 73.1
47 TraesCS6A01G209100 chr5A 84.064 251 29 9 3161 3407 619857147 619856904 1.290000e-56 231.0
48 TraesCS6A01G209100 chr5A 95.122 41 2 0 1135 1175 426290152 426290192 1.380000e-06 65.8
49 TraesCS6A01G209100 chr7A 95.556 45 2 0 1133 1177 18268180 18268224 8.280000e-09 73.1
50 TraesCS6A01G209100 chr4A 87.931 58 6 1 1135 1191 17854663 17854606 3.850000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G209100 chr6A 378165774 378171726 5952 False 10994.0 10994 100.00000 1 5953 1 chr6A.!!$F1 5952
1 TraesCS6A01G209100 chr2A 199107017 199108852 1835 True 2902.0 2902 95.31800 2926 4747 1 chr2A.!!$R1 1821
2 TraesCS6A01G209100 chr7D 95294022 95295837 1815 True 2418.0 2418 90.76000 2926 4741 1 chr7D.!!$R2 1815
3 TraesCS6A01G209100 chr7D 589199456 589200115 659 True 869.0 869 90.55500 1806 2464 1 chr7D.!!$R5 658
4 TraesCS6A01G209100 chr7D 589204371 589205030 659 False 869.0 869 90.55500 1806 2464 1 chr7D.!!$F2 658
5 TraesCS6A01G209100 chr6D 266777817 266781485 3668 False 1290.0 1620 92.69875 376 5920 4 chr6D.!!$F1 5544
6 TraesCS6A01G209100 chr6B 414333235 414337067 3832 False 1031.8 1341 91.68280 376 5915 5 chr6B.!!$F3 5539
7 TraesCS6A01G209100 chr2D 611165830 611166866 1036 True 1153.0 1153 86.77500 3620 4665 1 chr2D.!!$R2 1045
8 TraesCS6A01G209100 chr2D 181602587 181603251 664 True 869.0 869 90.44800 1806 2464 1 chr2D.!!$R1 658
9 TraesCS6A01G209100 chr4D 359847608 359848716 1108 True 1136.0 1136 85.47200 3649 4748 1 chr4D.!!$R1 1099
10 TraesCS6A01G209100 chr5B 371957772 371958801 1029 False 1081.0 1081 85.63200 3620 4659 1 chr5B.!!$F1 1039
11 TraesCS6A01G209100 chr5B 549170012 549171147 1135 True 1074.0 1074 83.86800 3602 4744 1 chr5B.!!$R3 1142
12 TraesCS6A01G209100 chr1B 555947243 555948310 1067 False 1075.0 1075 84.92100 3668 4741 1 chr1B.!!$F1 1073
13 TraesCS6A01G209100 chr3A 655859055 655859974 919 False 974.0 974 85.86700 3635 4561 1 chr3A.!!$F2 926
14 TraesCS6A01G209100 chr5D 560525630 560526580 950 True 963.0 963 85.12400 3602 4556 1 chr5D.!!$R3 954
15 TraesCS6A01G209100 chr5D 367505427 367506088 661 True 887.0 887 91.00400 1806 2464 1 chr5D.!!$R2 658
16 TraesCS6A01G209100 chr5D 437148702 437149365 663 False 867.0 867 90.43300 1806 2464 1 chr5D.!!$F1 658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
133 134 0.033920 TCAGCAAGCTGTGTGATCGT 59.966 50.000 20.34 0.00 43.96 3.73 F
1427 1464 0.034337 GTCAAGTACCTGACGCCCAA 59.966 55.000 8.80 0.00 36.64 4.12 F
1996 2035 0.034756 TTCACACACACTCCGATGGG 59.965 55.000 0.00 0.00 0.00 4.00 F
3011 3147 0.034283 TGTATCAAGGGCTGCATGCA 60.034 50.000 21.29 21.29 45.15 3.96 F
3111 3248 2.073056 TCACACGCGCATATCACTTTT 58.927 42.857 5.73 0.00 0.00 2.27 F
4741 4933 0.519077 GTCCGGACGTTAGTCTCGTT 59.481 55.000 20.85 0.00 46.29 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1464 1501 1.406219 CGTGCACCTTCATCTCGTCG 61.406 60.000 12.15 0.0 0.00 5.12 R
2946 3082 0.109597 GAACCTGTTGCAATCTGCCG 60.110 55.000 0.59 0.0 44.23 5.69 R
3111 3248 1.462616 AAGCGAACATGCATTGGCTA 58.537 45.000 9.57 0.0 42.10 3.93 R
4681 4873 0.389391 CCGCACGATCTAATCCCACT 59.611 55.000 0.00 0.0 0.00 4.00 R
4802 4994 3.377172 CCCTCGGATCAAAATACACAACC 59.623 47.826 0.00 0.0 0.00 3.77 R
5703 5982 3.118261 TGTGAAAGTGTCCTTCTCAGCTT 60.118 43.478 0.00 0.0 0.00 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.557220 TTGCGTGGACCCTCTGAA 58.443 55.556 0.00 0.00 0.00 3.02
18 19 1.833606 TTGCGTGGACCCTCTGAAA 59.166 52.632 0.00 0.00 0.00 2.69
19 20 0.400213 TTGCGTGGACCCTCTGAAAT 59.600 50.000 0.00 0.00 0.00 2.17
20 21 0.400213 TGCGTGGACCCTCTGAAATT 59.600 50.000 0.00 0.00 0.00 1.82
21 22 0.804989 GCGTGGACCCTCTGAAATTG 59.195 55.000 0.00 0.00 0.00 2.32
22 23 1.882352 GCGTGGACCCTCTGAAATTGT 60.882 52.381 0.00 0.00 0.00 2.71
23 24 2.076863 CGTGGACCCTCTGAAATTGTC 58.923 52.381 0.00 0.00 0.00 3.18
24 25 2.076863 GTGGACCCTCTGAAATTGTCG 58.923 52.381 0.00 0.00 0.00 4.35
25 26 1.087501 GGACCCTCTGAAATTGTCGC 58.912 55.000 0.00 0.00 0.00 5.19
26 27 1.610624 GGACCCTCTGAAATTGTCGCA 60.611 52.381 0.00 0.00 0.00 5.10
27 28 2.151202 GACCCTCTGAAATTGTCGCAA 58.849 47.619 0.00 0.00 0.00 4.85
28 29 2.749621 GACCCTCTGAAATTGTCGCAAT 59.250 45.455 0.09 0.09 0.00 3.56
29 30 3.938963 GACCCTCTGAAATTGTCGCAATA 59.061 43.478 5.67 0.00 0.00 1.90
30 31 4.331968 ACCCTCTGAAATTGTCGCAATAA 58.668 39.130 5.67 0.00 0.00 1.40
31 32 4.764823 ACCCTCTGAAATTGTCGCAATAAA 59.235 37.500 5.67 0.00 0.00 1.40
32 33 5.095490 CCCTCTGAAATTGTCGCAATAAAC 58.905 41.667 5.67 2.72 0.00 2.01
33 34 5.106157 CCCTCTGAAATTGTCGCAATAAACT 60.106 40.000 5.67 0.00 0.00 2.66
34 35 5.796935 CCTCTGAAATTGTCGCAATAAACTG 59.203 40.000 5.67 5.45 0.00 3.16
35 36 5.698832 TCTGAAATTGTCGCAATAAACTGG 58.301 37.500 5.67 0.00 0.00 4.00
36 37 5.240623 TCTGAAATTGTCGCAATAAACTGGT 59.759 36.000 5.67 0.00 0.00 4.00
37 38 5.218885 TGAAATTGTCGCAATAAACTGGTG 58.781 37.500 5.67 0.00 0.00 4.17
38 39 5.009110 TGAAATTGTCGCAATAAACTGGTGA 59.991 36.000 5.67 0.00 0.00 4.02
39 40 5.643379 AATTGTCGCAATAAACTGGTGAT 57.357 34.783 5.67 0.00 0.00 3.06
40 41 4.678509 TTGTCGCAATAAACTGGTGATC 57.321 40.909 0.00 0.00 0.00 2.92
41 42 3.669536 TGTCGCAATAAACTGGTGATCA 58.330 40.909 0.00 0.00 0.00 2.92
42 43 4.068599 TGTCGCAATAAACTGGTGATCAA 58.931 39.130 0.00 0.00 0.00 2.57
43 44 4.154015 TGTCGCAATAAACTGGTGATCAAG 59.846 41.667 0.00 0.00 0.00 3.02
44 45 3.126858 TCGCAATAAACTGGTGATCAAGC 59.873 43.478 0.00 0.00 0.00 4.01
45 46 3.119884 CGCAATAAACTGGTGATCAAGCA 60.120 43.478 0.00 0.00 34.41 3.91
46 47 4.168760 GCAATAAACTGGTGATCAAGCAC 58.831 43.478 0.00 0.00 38.05 4.40
47 48 4.321156 GCAATAAACTGGTGATCAAGCACA 60.321 41.667 0.00 0.00 40.52 4.57
48 49 5.622914 GCAATAAACTGGTGATCAAGCACAT 60.623 40.000 0.00 0.00 40.52 3.21
49 50 3.928727 AAACTGGTGATCAAGCACATG 57.071 42.857 0.00 0.00 40.52 3.21
50 51 2.865119 ACTGGTGATCAAGCACATGA 57.135 45.000 0.00 0.00 40.52 3.07
51 52 3.361281 ACTGGTGATCAAGCACATGAT 57.639 42.857 0.00 0.00 42.62 2.45
52 53 3.693807 ACTGGTGATCAAGCACATGATT 58.306 40.909 0.00 0.00 40.08 2.57
53 54 3.693085 ACTGGTGATCAAGCACATGATTC 59.307 43.478 0.00 0.00 40.08 2.52
54 55 3.688235 TGGTGATCAAGCACATGATTCA 58.312 40.909 0.00 0.00 40.08 2.57
55 56 4.274978 TGGTGATCAAGCACATGATTCAT 58.725 39.130 0.00 0.00 40.08 2.57
56 57 4.707934 TGGTGATCAAGCACATGATTCATT 59.292 37.500 0.00 0.00 40.08 2.57
57 58 5.041287 GGTGATCAAGCACATGATTCATTG 58.959 41.667 0.00 1.14 40.08 2.82
58 59 4.503007 GTGATCAAGCACATGATTCATTGC 59.497 41.667 18.25 18.25 40.08 3.56
59 60 3.513680 TCAAGCACATGATTCATTGCC 57.486 42.857 20.46 10.12 32.54 4.52
60 61 2.159352 TCAAGCACATGATTCATTGCCG 60.159 45.455 20.46 15.47 32.54 5.69
61 62 1.466856 AGCACATGATTCATTGCCGT 58.533 45.000 20.46 6.06 32.54 5.68
62 63 1.133598 AGCACATGATTCATTGCCGTG 59.866 47.619 20.46 15.49 32.54 4.94
63 64 1.135315 GCACATGATTCATTGCCGTGT 60.135 47.619 16.46 3.47 0.00 4.49
64 65 2.521996 CACATGATTCATTGCCGTGTG 58.478 47.619 0.00 0.00 40.15 3.82
65 66 2.162008 CACATGATTCATTGCCGTGTGA 59.838 45.455 0.00 0.00 45.61 3.58
66 67 2.162208 ACATGATTCATTGCCGTGTGAC 59.838 45.455 0.00 0.00 0.00 3.67
67 68 2.183478 TGATTCATTGCCGTGTGACT 57.817 45.000 0.00 0.00 0.00 3.41
68 69 3.326836 TGATTCATTGCCGTGTGACTA 57.673 42.857 0.00 0.00 0.00 2.59
69 70 3.669536 TGATTCATTGCCGTGTGACTAA 58.330 40.909 0.00 0.00 0.00 2.24
70 71 4.260985 TGATTCATTGCCGTGTGACTAAT 58.739 39.130 0.00 0.00 0.00 1.73
71 72 4.699735 TGATTCATTGCCGTGTGACTAATT 59.300 37.500 0.00 0.00 0.00 1.40
72 73 4.678509 TTCATTGCCGTGTGACTAATTC 57.321 40.909 0.00 0.00 0.00 2.17
73 74 3.006940 TCATTGCCGTGTGACTAATTCC 58.993 45.455 0.00 0.00 0.00 3.01
74 75 2.552599 TTGCCGTGTGACTAATTCCA 57.447 45.000 0.00 0.00 0.00 3.53
75 76 2.779755 TGCCGTGTGACTAATTCCAT 57.220 45.000 0.00 0.00 0.00 3.41
76 77 2.627945 TGCCGTGTGACTAATTCCATC 58.372 47.619 0.00 0.00 0.00 3.51
77 78 2.236146 TGCCGTGTGACTAATTCCATCT 59.764 45.455 0.00 0.00 0.00 2.90
78 79 3.270877 GCCGTGTGACTAATTCCATCTT 58.729 45.455 0.00 0.00 0.00 2.40
79 80 3.689649 GCCGTGTGACTAATTCCATCTTT 59.310 43.478 0.00 0.00 0.00 2.52
80 81 4.873827 GCCGTGTGACTAATTCCATCTTTA 59.126 41.667 0.00 0.00 0.00 1.85
81 82 5.353123 GCCGTGTGACTAATTCCATCTTTAA 59.647 40.000 0.00 0.00 0.00 1.52
82 83 6.128117 GCCGTGTGACTAATTCCATCTTTAAA 60.128 38.462 0.00 0.00 0.00 1.52
83 84 7.574217 GCCGTGTGACTAATTCCATCTTTAAAA 60.574 37.037 0.00 0.00 0.00 1.52
84 85 8.458843 CCGTGTGACTAATTCCATCTTTAAAAT 58.541 33.333 0.00 0.00 0.00 1.82
85 86 9.277565 CGTGTGACTAATTCCATCTTTAAAATG 57.722 33.333 0.00 0.00 0.00 2.32
90 91 9.573133 GACTAATTCCATCTTTAAAATGTGTGG 57.427 33.333 8.54 0.00 0.00 4.17
91 92 9.308000 ACTAATTCCATCTTTAAAATGTGTGGA 57.692 29.630 0.00 0.00 32.81 4.02
95 96 9.657419 ATTCCATCTTTAAAATGTGTGGATTTC 57.343 29.630 0.00 0.00 34.55 2.17
96 97 8.421249 TCCATCTTTAAAATGTGTGGATTTCT 57.579 30.769 0.00 0.00 29.89 2.52
97 98 9.527157 TCCATCTTTAAAATGTGTGGATTTCTA 57.473 29.630 0.00 0.00 29.89 2.10
98 99 9.573133 CCATCTTTAAAATGTGTGGATTTCTAC 57.427 33.333 8.54 0.00 0.00 2.59
101 102 8.296713 TCTTTAAAATGTGTGGATTTCTACAGC 58.703 33.333 0.00 0.00 38.02 4.40
102 103 7.759489 TTAAAATGTGTGGATTTCTACAGCT 57.241 32.000 0.00 0.00 38.02 4.24
103 104 5.886960 AAATGTGTGGATTTCTACAGCTC 57.113 39.130 0.00 0.00 38.02 4.09
104 105 4.833478 ATGTGTGGATTTCTACAGCTCT 57.167 40.909 0.00 0.00 38.02 4.09
105 106 3.930336 TGTGTGGATTTCTACAGCTCTG 58.070 45.455 0.00 0.00 38.02 3.35
106 107 3.265791 GTGTGGATTTCTACAGCTCTGG 58.734 50.000 0.00 0.00 38.02 3.86
107 108 3.055819 GTGTGGATTTCTACAGCTCTGGA 60.056 47.826 0.00 0.00 38.02 3.86
108 109 3.196469 TGTGGATTTCTACAGCTCTGGAG 59.804 47.826 2.68 2.68 42.93 3.86
112 113 3.176728 TCTACAGCTCTGGAGACCG 57.823 57.895 7.70 0.00 45.14 4.79
113 114 1.032657 TCTACAGCTCTGGAGACCGC 61.033 60.000 7.70 0.00 45.14 5.68
114 115 1.000771 TACAGCTCTGGAGACCGCT 60.001 57.895 1.35 0.00 34.19 5.52
115 116 1.032657 TACAGCTCTGGAGACCGCTC 61.033 60.000 1.35 0.00 40.54 5.03
116 117 2.036414 AGCTCTGGAGACCGCTCA 59.964 61.111 1.35 0.00 43.14 4.26
117 118 2.051518 AGCTCTGGAGACCGCTCAG 61.052 63.158 1.35 0.00 43.14 3.35
118 119 2.493973 CTCTGGAGACCGCTCAGC 59.506 66.667 0.00 0.00 43.14 4.26
119 120 2.283173 TCTGGAGACCGCTCAGCA 60.283 61.111 0.00 0.00 43.14 4.41
120 121 1.881903 CTCTGGAGACCGCTCAGCAA 61.882 60.000 0.00 0.00 43.14 3.91
121 122 1.447489 CTGGAGACCGCTCAGCAAG 60.447 63.158 0.00 0.00 43.14 4.01
126 127 2.675056 GACCGCTCAGCAAGCTGTG 61.675 63.158 20.34 18.68 46.97 3.66
132 133 0.720027 CTCAGCAAGCTGTGTGATCG 59.280 55.000 20.34 0.00 43.96 3.69
133 134 0.033920 TCAGCAAGCTGTGTGATCGT 59.966 50.000 20.34 0.00 43.96 3.73
134 135 0.165295 CAGCAAGCTGTGTGATCGTG 59.835 55.000 13.72 0.00 39.10 4.35
135 136 0.952497 AGCAAGCTGTGTGATCGTGG 60.952 55.000 0.00 0.00 0.00 4.94
136 137 1.499056 CAAGCTGTGTGATCGTGGC 59.501 57.895 0.00 0.00 0.00 5.01
137 138 0.952497 CAAGCTGTGTGATCGTGGCT 60.952 55.000 0.00 0.00 0.00 4.75
138 139 0.250467 AAGCTGTGTGATCGTGGCTT 60.250 50.000 0.00 0.00 35.57 4.35
139 140 0.671781 AGCTGTGTGATCGTGGCTTC 60.672 55.000 0.00 0.00 0.00 3.86
140 141 0.950555 GCTGTGTGATCGTGGCTTCA 60.951 55.000 0.00 0.00 0.00 3.02
141 142 1.730501 CTGTGTGATCGTGGCTTCAT 58.269 50.000 0.00 0.00 0.00 2.57
142 143 1.662629 CTGTGTGATCGTGGCTTCATC 59.337 52.381 0.00 0.00 0.00 2.92
143 144 1.001860 TGTGTGATCGTGGCTTCATCA 59.998 47.619 0.00 0.00 0.00 3.07
144 145 2.076100 GTGTGATCGTGGCTTCATCAA 58.924 47.619 0.00 0.00 0.00 2.57
145 146 2.076100 TGTGATCGTGGCTTCATCAAC 58.924 47.619 0.00 0.00 0.00 3.18
146 147 2.289631 TGTGATCGTGGCTTCATCAACT 60.290 45.455 0.00 0.00 0.00 3.16
147 148 2.349886 GTGATCGTGGCTTCATCAACTC 59.650 50.000 0.00 0.00 0.00 3.01
148 149 1.936547 GATCGTGGCTTCATCAACTCC 59.063 52.381 0.00 0.00 0.00 3.85
149 150 0.684535 TCGTGGCTTCATCAACTCCA 59.315 50.000 0.00 0.00 0.00 3.86
150 151 1.278985 TCGTGGCTTCATCAACTCCAT 59.721 47.619 0.00 0.00 0.00 3.41
151 152 1.667724 CGTGGCTTCATCAACTCCATC 59.332 52.381 0.00 0.00 0.00 3.51
152 153 1.667724 GTGGCTTCATCAACTCCATCG 59.332 52.381 0.00 0.00 0.00 3.84
153 154 0.659957 GGCTTCATCAACTCCATCGC 59.340 55.000 0.00 0.00 0.00 4.58
154 155 0.659957 GCTTCATCAACTCCATCGCC 59.340 55.000 0.00 0.00 0.00 5.54
155 156 1.745141 GCTTCATCAACTCCATCGCCT 60.745 52.381 0.00 0.00 0.00 5.52
156 157 2.208431 CTTCATCAACTCCATCGCCTC 58.792 52.381 0.00 0.00 0.00 4.70
157 158 1.194218 TCATCAACTCCATCGCCTCA 58.806 50.000 0.00 0.00 0.00 3.86
158 159 1.137675 TCATCAACTCCATCGCCTCAG 59.862 52.381 0.00 0.00 0.00 3.35
159 160 0.467384 ATCAACTCCATCGCCTCAGG 59.533 55.000 0.00 0.00 0.00 3.86
160 161 0.904865 TCAACTCCATCGCCTCAGGT 60.905 55.000 0.00 0.00 0.00 4.00
161 162 0.460987 CAACTCCATCGCCTCAGGTC 60.461 60.000 0.00 0.00 0.00 3.85
162 163 0.616111 AACTCCATCGCCTCAGGTCT 60.616 55.000 0.00 0.00 0.00 3.85
163 164 0.616111 ACTCCATCGCCTCAGGTCTT 60.616 55.000 0.00 0.00 0.00 3.01
164 165 0.103937 CTCCATCGCCTCAGGTCTTC 59.896 60.000 0.00 0.00 0.00 2.87
165 166 1.227089 CCATCGCCTCAGGTCTTCG 60.227 63.158 0.00 0.00 0.00 3.79
166 167 1.880340 CATCGCCTCAGGTCTTCGC 60.880 63.158 0.00 0.00 0.00 4.70
167 168 2.055042 ATCGCCTCAGGTCTTCGCT 61.055 57.895 0.00 0.00 0.00 4.93
168 169 2.010582 ATCGCCTCAGGTCTTCGCTC 62.011 60.000 0.00 0.00 0.00 5.03
169 170 2.185608 GCCTCAGGTCTTCGCTCC 59.814 66.667 0.00 0.00 0.00 4.70
170 171 2.355193 GCCTCAGGTCTTCGCTCCT 61.355 63.158 0.00 0.00 33.96 3.69
171 172 1.813192 CCTCAGGTCTTCGCTCCTC 59.187 63.158 0.00 0.00 30.91 3.71
172 173 0.682855 CCTCAGGTCTTCGCTCCTCT 60.683 60.000 0.00 0.00 30.91 3.69
173 174 0.455410 CTCAGGTCTTCGCTCCTCTG 59.545 60.000 0.00 0.00 30.91 3.35
174 175 1.153667 CAGGTCTTCGCTCCTCTGC 60.154 63.158 0.00 0.00 30.91 4.26
175 176 1.607756 AGGTCTTCGCTCCTCTGCA 60.608 57.895 0.00 0.00 0.00 4.41
176 177 1.153667 GGTCTTCGCTCCTCTGCAG 60.154 63.158 7.63 7.63 0.00 4.41
177 178 1.809209 GTCTTCGCTCCTCTGCAGC 60.809 63.158 9.47 0.00 0.00 5.25
178 179 2.511145 CTTCGCTCCTCTGCAGCC 60.511 66.667 9.47 0.00 32.83 4.85
179 180 4.441695 TTCGCTCCTCTGCAGCCG 62.442 66.667 9.47 6.53 32.83 5.52
209 210 4.016706 CGTCACCTCCCCCACCAC 62.017 72.222 0.00 0.00 0.00 4.16
210 211 2.529389 GTCACCTCCCCCACCACT 60.529 66.667 0.00 0.00 0.00 4.00
211 212 2.529136 TCACCTCCCCCACCACTG 60.529 66.667 0.00 0.00 0.00 3.66
212 213 3.650950 CACCTCCCCCACCACTGG 61.651 72.222 0.00 0.00 37.29 4.00
213 214 3.869934 ACCTCCCCCACCACTGGA 61.870 66.667 0.71 0.00 40.55 3.86
214 215 3.011517 CCTCCCCCACCACTGGAG 61.012 72.222 0.71 0.00 44.34 3.86
215 216 3.721706 CTCCCCCACCACTGGAGC 61.722 72.222 0.71 0.00 40.55 4.70
218 219 4.039092 CCCCACCACTGGAGCCTG 62.039 72.222 0.71 0.00 40.55 4.85
219 220 2.930019 CCCACCACTGGAGCCTGA 60.930 66.667 0.71 0.00 40.55 3.86
220 221 2.304056 CCCACCACTGGAGCCTGAT 61.304 63.158 0.71 0.00 40.55 2.90
221 222 1.687612 CCACCACTGGAGCCTGATT 59.312 57.895 0.71 0.00 40.55 2.57
222 223 0.911769 CCACCACTGGAGCCTGATTA 59.088 55.000 0.71 0.00 40.55 1.75
223 224 1.134280 CCACCACTGGAGCCTGATTAG 60.134 57.143 0.71 0.00 40.55 1.73
224 225 1.833630 CACCACTGGAGCCTGATTAGA 59.166 52.381 0.71 0.00 0.00 2.10
225 226 2.114616 ACCACTGGAGCCTGATTAGAG 58.885 52.381 0.71 0.00 0.00 2.43
226 227 2.114616 CCACTGGAGCCTGATTAGAGT 58.885 52.381 0.08 0.00 0.00 3.24
227 228 2.102252 CCACTGGAGCCTGATTAGAGTC 59.898 54.545 0.08 0.00 0.00 3.36
228 229 2.028130 ACTGGAGCCTGATTAGAGTCG 58.972 52.381 0.08 0.00 0.00 4.18
229 230 0.747255 TGGAGCCTGATTAGAGTCGC 59.253 55.000 0.00 0.00 0.00 5.19
230 231 1.036707 GGAGCCTGATTAGAGTCGCT 58.963 55.000 0.00 0.00 0.00 4.93
231 232 1.410882 GGAGCCTGATTAGAGTCGCTT 59.589 52.381 0.00 0.00 0.00 4.68
232 233 2.159028 GGAGCCTGATTAGAGTCGCTTT 60.159 50.000 0.00 0.00 0.00 3.51
233 234 3.526534 GAGCCTGATTAGAGTCGCTTTT 58.473 45.455 0.00 0.00 0.00 2.27
234 235 3.935828 GAGCCTGATTAGAGTCGCTTTTT 59.064 43.478 0.00 0.00 0.00 1.94
252 253 3.817709 TTTTCTTGTCTTTGGGGCTTG 57.182 42.857 0.00 0.00 0.00 4.01
253 254 2.452600 TTCTTGTCTTTGGGGCTTGT 57.547 45.000 0.00 0.00 0.00 3.16
254 255 2.452600 TCTTGTCTTTGGGGCTTGTT 57.547 45.000 0.00 0.00 0.00 2.83
255 256 2.745968 TCTTGTCTTTGGGGCTTGTTT 58.254 42.857 0.00 0.00 0.00 2.83
256 257 2.430332 TCTTGTCTTTGGGGCTTGTTTG 59.570 45.455 0.00 0.00 0.00 2.93
257 258 1.118838 TGTCTTTGGGGCTTGTTTGG 58.881 50.000 0.00 0.00 0.00 3.28
258 259 0.249868 GTCTTTGGGGCTTGTTTGGC 60.250 55.000 0.00 0.00 0.00 4.52
259 260 0.398381 TCTTTGGGGCTTGTTTGGCT 60.398 50.000 0.00 0.00 0.00 4.75
260 261 0.249996 CTTTGGGGCTTGTTTGGCTG 60.250 55.000 0.00 0.00 0.00 4.85
261 262 0.980231 TTTGGGGCTTGTTTGGCTGT 60.980 50.000 0.00 0.00 0.00 4.40
262 263 1.684386 TTGGGGCTTGTTTGGCTGTG 61.684 55.000 0.00 0.00 0.00 3.66
263 264 2.029518 GGGCTTGTTTGGCTGTGC 59.970 61.111 0.00 0.00 0.00 4.57
282 283 4.016706 CCCAGCCGGACCTCGTTT 62.017 66.667 5.05 0.00 37.11 3.60
283 284 2.652095 CCCAGCCGGACCTCGTTTA 61.652 63.158 5.05 0.00 37.11 2.01
284 285 1.520666 CCAGCCGGACCTCGTTTAT 59.479 57.895 5.05 0.00 37.11 1.40
285 286 0.107848 CCAGCCGGACCTCGTTTATT 60.108 55.000 5.05 0.00 37.11 1.40
286 287 1.677820 CCAGCCGGACCTCGTTTATTT 60.678 52.381 5.05 0.00 37.11 1.40
287 288 1.396996 CAGCCGGACCTCGTTTATTTG 59.603 52.381 5.05 0.00 37.11 2.32
288 289 1.002773 AGCCGGACCTCGTTTATTTGT 59.997 47.619 5.05 0.00 37.11 2.83
289 290 1.808343 GCCGGACCTCGTTTATTTGTT 59.192 47.619 5.05 0.00 37.11 2.83
290 291 2.413634 GCCGGACCTCGTTTATTTGTTG 60.414 50.000 5.05 0.00 37.11 3.33
291 292 2.809696 CCGGACCTCGTTTATTTGTTGT 59.190 45.455 0.00 0.00 37.11 3.32
292 293 3.251487 CCGGACCTCGTTTATTTGTTGTT 59.749 43.478 0.00 0.00 37.11 2.83
293 294 4.460505 CGGACCTCGTTTATTTGTTGTTC 58.539 43.478 0.00 0.00 0.00 3.18
294 295 4.460505 GGACCTCGTTTATTTGTTGTTCG 58.539 43.478 0.00 0.00 0.00 3.95
295 296 4.024641 GGACCTCGTTTATTTGTTGTTCGT 60.025 41.667 0.00 0.00 0.00 3.85
296 297 5.177327 GGACCTCGTTTATTTGTTGTTCGTA 59.823 40.000 0.00 0.00 0.00 3.43
297 298 5.977731 ACCTCGTTTATTTGTTGTTCGTAC 58.022 37.500 0.00 0.00 0.00 3.67
298 299 5.050159 ACCTCGTTTATTTGTTGTTCGTACC 60.050 40.000 0.00 0.00 0.00 3.34
299 300 5.341407 TCGTTTATTTGTTGTTCGTACCC 57.659 39.130 0.00 0.00 0.00 3.69
300 301 5.055812 TCGTTTATTTGTTGTTCGTACCCT 58.944 37.500 0.00 0.00 0.00 4.34
301 302 5.050227 TCGTTTATTTGTTGTTCGTACCCTG 60.050 40.000 0.00 0.00 0.00 4.45
302 303 5.050227 CGTTTATTTGTTGTTCGTACCCTGA 60.050 40.000 0.00 0.00 0.00 3.86
303 304 6.511444 CGTTTATTTGTTGTTCGTACCCTGAA 60.511 38.462 0.00 0.00 0.00 3.02
304 305 4.823790 ATTTGTTGTTCGTACCCTGAAC 57.176 40.909 5.47 5.47 44.64 3.18
305 306 3.547054 TTGTTGTTCGTACCCTGAACT 57.453 42.857 11.72 0.00 44.67 3.01
306 307 3.547054 TGTTGTTCGTACCCTGAACTT 57.453 42.857 11.72 0.00 44.67 2.66
307 308 3.199677 TGTTGTTCGTACCCTGAACTTG 58.800 45.455 11.72 0.00 44.67 3.16
308 309 3.200483 GTTGTTCGTACCCTGAACTTGT 58.800 45.455 11.72 0.00 44.67 3.16
309 310 4.141981 TGTTGTTCGTACCCTGAACTTGTA 60.142 41.667 11.72 0.00 44.67 2.41
310 311 3.981211 TGTTCGTACCCTGAACTTGTAC 58.019 45.455 11.72 0.00 44.67 2.90
311 312 3.638160 TGTTCGTACCCTGAACTTGTACT 59.362 43.478 11.72 0.00 44.67 2.73
312 313 4.233005 GTTCGTACCCTGAACTTGTACTC 58.767 47.826 5.24 0.00 41.89 2.59
313 314 3.759581 TCGTACCCTGAACTTGTACTCT 58.240 45.455 0.00 0.00 34.17 3.24
314 315 3.755378 TCGTACCCTGAACTTGTACTCTC 59.245 47.826 0.00 0.00 34.17 3.20
315 316 3.504906 CGTACCCTGAACTTGTACTCTCA 59.495 47.826 0.00 0.00 34.17 3.27
316 317 4.158025 CGTACCCTGAACTTGTACTCTCAT 59.842 45.833 0.00 0.00 34.17 2.90
317 318 5.356190 CGTACCCTGAACTTGTACTCTCATA 59.644 44.000 0.00 0.00 34.17 2.15
318 319 6.127814 CGTACCCTGAACTTGTACTCTCATAA 60.128 42.308 0.00 0.00 34.17 1.90
319 320 6.875972 ACCCTGAACTTGTACTCTCATAAT 57.124 37.500 0.00 0.00 0.00 1.28
320 321 7.259088 ACCCTGAACTTGTACTCTCATAATT 57.741 36.000 0.00 0.00 0.00 1.40
321 322 7.106239 ACCCTGAACTTGTACTCTCATAATTG 58.894 38.462 0.00 0.00 0.00 2.32
322 323 7.106239 CCCTGAACTTGTACTCTCATAATTGT 58.894 38.462 0.00 0.00 0.00 2.71
323 324 7.607991 CCCTGAACTTGTACTCTCATAATTGTT 59.392 37.037 0.00 0.00 0.00 2.83
324 325 8.446273 CCTGAACTTGTACTCTCATAATTGTTG 58.554 37.037 0.00 0.00 0.00 3.33
325 326 8.322906 TGAACTTGTACTCTCATAATTGTTGG 57.677 34.615 0.00 0.00 0.00 3.77
326 327 8.154203 TGAACTTGTACTCTCATAATTGTTGGA 58.846 33.333 0.00 0.00 0.00 3.53
327 328 9.167311 GAACTTGTACTCTCATAATTGTTGGAT 57.833 33.333 0.00 0.00 0.00 3.41
328 329 8.498054 ACTTGTACTCTCATAATTGTTGGATG 57.502 34.615 0.00 0.00 0.00 3.51
329 330 6.925610 TGTACTCTCATAATTGTTGGATGC 57.074 37.500 0.00 0.00 0.00 3.91
330 331 6.653020 TGTACTCTCATAATTGTTGGATGCT 58.347 36.000 0.00 0.00 0.00 3.79
331 332 7.112122 TGTACTCTCATAATTGTTGGATGCTT 58.888 34.615 0.00 0.00 0.00 3.91
332 333 6.446781 ACTCTCATAATTGTTGGATGCTTG 57.553 37.500 0.00 0.00 0.00 4.01
333 334 5.359009 ACTCTCATAATTGTTGGATGCTTGG 59.641 40.000 0.00 0.00 0.00 3.61
334 335 4.098349 TCTCATAATTGTTGGATGCTTGGC 59.902 41.667 0.00 0.00 0.00 4.52
335 336 2.937469 TAATTGTTGGATGCTTGGCG 57.063 45.000 0.00 0.00 0.00 5.69
336 337 0.247185 AATTGTTGGATGCTTGGCGG 59.753 50.000 0.00 0.00 0.00 6.13
337 338 0.899717 ATTGTTGGATGCTTGGCGGT 60.900 50.000 0.00 0.00 0.00 5.68
338 339 1.112315 TTGTTGGATGCTTGGCGGTT 61.112 50.000 0.00 0.00 0.00 4.44
339 340 0.250945 TGTTGGATGCTTGGCGGTTA 60.251 50.000 0.00 0.00 0.00 2.85
340 341 1.102978 GTTGGATGCTTGGCGGTTAT 58.897 50.000 0.00 0.00 0.00 1.89
341 342 1.102154 TTGGATGCTTGGCGGTTATG 58.898 50.000 0.00 0.00 0.00 1.90
342 343 1.360192 GGATGCTTGGCGGTTATGC 59.640 57.895 0.00 0.00 0.00 3.14
343 344 1.103398 GGATGCTTGGCGGTTATGCT 61.103 55.000 0.00 0.00 34.52 3.79
344 345 0.740737 GATGCTTGGCGGTTATGCTT 59.259 50.000 0.00 0.00 34.52 3.91
345 346 1.134946 GATGCTTGGCGGTTATGCTTT 59.865 47.619 0.00 0.00 34.52 3.51
346 347 1.827681 TGCTTGGCGGTTATGCTTTA 58.172 45.000 0.00 0.00 34.52 1.85
347 348 2.374184 TGCTTGGCGGTTATGCTTTAT 58.626 42.857 0.00 0.00 34.52 1.40
348 349 3.546724 TGCTTGGCGGTTATGCTTTATA 58.453 40.909 0.00 0.00 34.52 0.98
349 350 3.948473 TGCTTGGCGGTTATGCTTTATAA 59.052 39.130 0.00 0.00 34.52 0.98
350 351 4.582656 TGCTTGGCGGTTATGCTTTATAAT 59.417 37.500 0.00 0.00 33.99 1.28
351 352 5.765677 TGCTTGGCGGTTATGCTTTATAATA 59.234 36.000 0.00 0.00 33.99 0.98
352 353 6.432783 TGCTTGGCGGTTATGCTTTATAATAT 59.567 34.615 0.00 0.00 33.99 1.28
353 354 7.608376 TGCTTGGCGGTTATGCTTTATAATATA 59.392 33.333 0.00 0.00 33.99 0.86
354 355 8.455682 GCTTGGCGGTTATGCTTTATAATATAA 58.544 33.333 0.00 0.00 33.99 0.98
395 396 9.787435 TTTTGTAAGGAAGCTCAGAAAATACTA 57.213 29.630 0.00 0.00 0.00 1.82
397 398 9.436957 TTGTAAGGAAGCTCAGAAAATACTAAG 57.563 33.333 0.00 0.00 0.00 2.18
424 425 6.481643 AGTTGGCTAATTTTCCTTGCTACTA 58.518 36.000 0.00 0.00 0.00 1.82
449 450 5.895636 TTAGCCTGTATGTGATTTGTTGG 57.104 39.130 0.00 0.00 0.00 3.77
452 453 4.218417 AGCCTGTATGTGATTTGTTGGAAC 59.782 41.667 0.00 0.00 0.00 3.62
455 456 4.390264 TGTATGTGATTTGTTGGAACGGA 58.610 39.130 0.00 0.00 0.00 4.69
487 488 9.453572 TCTCTCTTGATGCATTAACTTACAATT 57.546 29.630 0.00 0.00 0.00 2.32
540 543 2.933906 AGTGTTGTTACTGGTGTGTTCG 59.066 45.455 0.00 0.00 0.00 3.95
616 619 4.539870 CACTAGTGCACCACATTTCTTTG 58.460 43.478 14.63 0.00 36.74 2.77
710 713 1.682854 TGCCCTGAAACTGAAAGCAAG 59.317 47.619 0.00 0.00 37.60 4.01
712 715 1.959282 CCCTGAAACTGAAAGCAAGCT 59.041 47.619 0.00 0.00 37.60 3.74
713 716 3.149196 CCCTGAAACTGAAAGCAAGCTA 58.851 45.455 0.00 0.00 37.60 3.32
714 717 3.569701 CCCTGAAACTGAAAGCAAGCTAA 59.430 43.478 0.00 0.00 37.60 3.09
728 731 6.037786 AGCAAGCTAATAGTACAAGACACA 57.962 37.500 0.00 0.00 0.00 3.72
758 762 0.682292 GATTCCCCGCCCAAACAAAA 59.318 50.000 0.00 0.00 0.00 2.44
878 891 3.461061 TGCAAGAAGAATATCCAGCTCG 58.539 45.455 0.00 0.00 0.00 5.03
880 893 7.694809 CTGCAAGAAGAATATCCAGCTCGGA 62.695 48.000 7.26 7.26 43.57 4.55
920 933 2.901249 CCAACGATGGTAACTAGGGTG 58.099 52.381 3.02 0.00 42.18 4.61
937 950 4.298626 AGGGTGAGACTGCCTATAAATGA 58.701 43.478 0.00 0.00 0.00 2.57
991 1004 3.431626 CCGTATGATTGCAGGGAACTACA 60.432 47.826 0.00 0.00 40.21 2.74
1043 1056 4.407296 CCTAGTCTTGATCTTGGTAGCCTT 59.593 45.833 0.00 0.00 0.00 4.35
1044 1057 4.213564 AGTCTTGATCTTGGTAGCCTTG 57.786 45.455 0.00 0.00 0.00 3.61
1082 1095 5.525378 GTGATCCAGATATTGTCACAGGTTC 59.475 44.000 0.00 0.00 39.10 3.62
1092 1105 4.066646 TGTCACAGGTTCGATTTCTGAA 57.933 40.909 14.37 0.00 33.19 3.02
1131 1144 5.716094 GAGGTTTTCTCTCTCAAGTACTCC 58.284 45.833 0.00 0.00 39.38 3.85
1134 1147 5.012251 GGTTTTCTCTCTCAAGTACTCCCTT 59.988 44.000 0.00 0.00 0.00 3.95
1136 1149 7.317390 GTTTTCTCTCTCAAGTACTCCCTTAG 58.683 42.308 0.00 0.00 0.00 2.18
1137 1150 5.782677 TCTCTCTCAAGTACTCCCTTAGT 57.217 43.478 0.00 0.00 42.62 2.24
1138 1151 5.502079 TCTCTCTCAAGTACTCCCTTAGTG 58.498 45.833 0.00 0.00 39.39 2.74
1139 1152 5.014333 TCTCTCTCAAGTACTCCCTTAGTGT 59.986 44.000 0.00 0.00 39.39 3.55
1140 1153 5.642165 TCTCTCAAGTACTCCCTTAGTGTT 58.358 41.667 0.00 0.00 39.39 3.32
1141 1154 6.787170 TCTCTCAAGTACTCCCTTAGTGTTA 58.213 40.000 0.00 0.00 39.39 2.41
1142 1155 7.236529 TCTCTCAAGTACTCCCTTAGTGTTAA 58.763 38.462 0.00 0.00 39.39 2.01
1143 1156 7.727186 TCTCTCAAGTACTCCCTTAGTGTTAAA 59.273 37.037 0.00 0.00 39.39 1.52
1144 1157 8.253867 TCTCAAGTACTCCCTTAGTGTTAAAA 57.746 34.615 0.00 0.00 39.39 1.52
1145 1158 8.707449 TCTCAAGTACTCCCTTAGTGTTAAAAA 58.293 33.333 0.00 0.00 39.39 1.94
1146 1159 8.667076 TCAAGTACTCCCTTAGTGTTAAAAAC 57.333 34.615 0.00 0.00 39.39 2.43
1147 1160 8.266473 TCAAGTACTCCCTTAGTGTTAAAAACA 58.734 33.333 0.00 0.00 39.39 2.83
1148 1161 9.063615 CAAGTACTCCCTTAGTGTTAAAAACAT 57.936 33.333 0.00 0.00 44.35 2.71
1149 1162 9.636789 AAGTACTCCCTTAGTGTTAAAAACATT 57.363 29.630 0.00 0.00 44.35 2.71
1150 1163 9.281371 AGTACTCCCTTAGTGTTAAAAACATTC 57.719 33.333 0.00 0.00 44.35 2.67
1151 1164 9.281371 GTACTCCCTTAGTGTTAAAAACATTCT 57.719 33.333 0.00 0.00 44.35 2.40
1152 1165 8.762481 ACTCCCTTAGTGTTAAAAACATTCTT 57.238 30.769 0.00 0.00 44.35 2.52
1153 1166 9.856162 ACTCCCTTAGTGTTAAAAACATTCTTA 57.144 29.630 0.00 0.00 44.35 2.10
1169 1182 9.712305 AAACATTCTTATATTATGAGACGGAGG 57.288 33.333 0.00 0.00 0.00 4.30
1170 1183 7.841956 ACATTCTTATATTATGAGACGGAGGG 58.158 38.462 0.00 0.00 0.00 4.30
1171 1184 7.674348 ACATTCTTATATTATGAGACGGAGGGA 59.326 37.037 0.00 0.00 0.00 4.20
1177 1190 9.543231 TTATATTATGAGACGGAGGGAGTAATT 57.457 33.333 0.00 0.00 0.00 1.40
1178 1191 6.749036 ATTATGAGACGGAGGGAGTAATTT 57.251 37.500 0.00 0.00 0.00 1.82
1184 1197 6.117975 AGACGGAGGGAGTAATTTTTAACA 57.882 37.500 0.00 0.00 0.00 2.41
1274 1287 1.171308 ACGTACGCCTTCTAGCTTGA 58.829 50.000 16.72 0.00 0.00 3.02
1275 1288 1.132643 ACGTACGCCTTCTAGCTTGAG 59.867 52.381 16.72 0.00 0.00 3.02
1286 1299 5.694006 CCTTCTAGCTTGAGTACATGCATAC 59.306 44.000 0.00 0.00 45.55 2.39
1287 1300 6.462207 CCTTCTAGCTTGAGTACATGCATACT 60.462 42.308 0.00 0.00 45.55 2.12
1427 1464 0.034337 GTCAAGTACCTGACGCCCAA 59.966 55.000 8.80 0.00 36.64 4.12
1446 1483 3.452474 CAAGGGAAGATCAGACGATGAC 58.548 50.000 0.00 0.00 41.91 3.06
1581 1618 2.122813 AGCCGGATCTACCTGGGG 60.123 66.667 5.05 0.00 36.31 4.96
1878 1915 7.708998 AGCTAGCTAGAGTGTTGAATTACTAC 58.291 38.462 25.15 0.11 0.00 2.73
1930 1967 1.521010 CTCTGTGCTCTCATGGCCG 60.521 63.158 0.00 0.00 0.00 6.13
1948 1985 1.279271 CCGACAAGGGTGAAGATCCTT 59.721 52.381 0.00 0.00 44.32 3.36
1966 2003 2.766263 CCTTAGGGACTGTGCATCTGTA 59.234 50.000 0.77 0.00 41.52 2.74
1969 2006 3.101643 AGGGACTGTGCATCTGTACTA 57.898 47.619 0.77 0.00 37.18 1.82
1975 2012 4.822026 ACTGTGCATCTGTACTAAGGTTC 58.178 43.478 0.00 0.00 0.00 3.62
1996 2035 0.034756 TTCACACACACTCCGATGGG 59.965 55.000 0.00 0.00 0.00 4.00
2014 2053 5.555017 GATGGGTGCATTGTACATAGAGAT 58.445 41.667 7.21 0.00 0.00 2.75
2061 2100 3.904800 TCGATCCCTCAACATAAGCAA 57.095 42.857 0.00 0.00 0.00 3.91
2097 2224 4.768968 AGCCATCTTATCTTTTGTGTGCTT 59.231 37.500 0.00 0.00 0.00 3.91
2241 2368 0.390340 CCATCGGCTACATGGATCCG 60.390 60.000 14.24 14.24 43.32 4.18
2268 2396 4.324267 ACATAACACACTCCAAGCTTACC 58.676 43.478 0.00 0.00 0.00 2.85
2437 2569 2.231478 CTGAGAAGGAACTCGGCAAGTA 59.769 50.000 0.00 0.00 38.49 2.24
2521 2656 4.048504 AGTTTTTGACGCACCTAATTTGC 58.951 39.130 0.00 0.00 36.57 3.68
2543 2678 0.756294 TCCGTTCTTGTCTCAAGGCA 59.244 50.000 9.18 0.00 0.00 4.75
2552 2687 4.516698 TCTTGTCTCAAGGCAAAAGATGTC 59.483 41.667 9.18 0.00 0.00 3.06
2675 2810 0.323087 TGGCACACTCTAGCGTAGGA 60.323 55.000 0.00 0.00 0.00 2.94
2813 2948 4.314740 TGTTAGCGCAACCAAATTTCTT 57.685 36.364 11.47 0.00 36.20 2.52
2814 2949 4.688021 TGTTAGCGCAACCAAATTTCTTT 58.312 34.783 11.47 0.00 36.20 2.52
2816 2951 6.451393 TGTTAGCGCAACCAAATTTCTTTAT 58.549 32.000 11.47 0.00 36.20 1.40
2826 2961 8.764287 CAACCAAATTTCTTTATCTTTGACCAC 58.236 33.333 0.00 0.00 31.76 4.16
2827 2962 7.441836 ACCAAATTTCTTTATCTTTGACCACC 58.558 34.615 0.00 0.00 31.76 4.61
2828 2963 7.070571 ACCAAATTTCTTTATCTTTGACCACCA 59.929 33.333 0.00 0.00 31.76 4.17
2833 2968 8.421249 TTTCTTTATCTTTGACCACCATTCAT 57.579 30.769 0.00 0.00 0.00 2.57
2835 2970 9.527157 TTCTTTATCTTTGACCACCATTCATTA 57.473 29.630 0.00 0.00 0.00 1.90
2946 3082 4.482386 GAAAAACTAAAATCCTGCCGACC 58.518 43.478 0.00 0.00 0.00 4.79
3011 3147 0.034283 TGTATCAAGGGCTGCATGCA 60.034 50.000 21.29 21.29 45.15 3.96
3103 3240 2.588027 TTCCTAATCACACGCGCATA 57.412 45.000 5.73 0.00 0.00 3.14
3111 3248 2.073056 TCACACGCGCATATCACTTTT 58.927 42.857 5.73 0.00 0.00 2.27
3118 3255 3.303990 CGCGCATATCACTTTTAGCCAAT 60.304 43.478 8.75 0.00 0.00 3.16
3122 3259 5.535333 GCATATCACTTTTAGCCAATGCAT 58.465 37.500 0.00 0.00 41.13 3.96
3123 3260 5.404366 GCATATCACTTTTAGCCAATGCATG 59.596 40.000 0.00 0.00 41.13 4.06
3124 3261 6.509656 CATATCACTTTTAGCCAATGCATGT 58.490 36.000 0.00 0.00 41.13 3.21
3493 3642 5.255397 ACCATGATAACTTTTGACCCAGA 57.745 39.130 0.00 0.00 0.00 3.86
3860 4024 5.661312 TCTCATACCTGGTAACTTATGTGCT 59.339 40.000 11.17 0.00 37.61 4.40
3924 4089 7.281549 ACATATCCCCGATAACTTTTGTGTAAC 59.718 37.037 0.00 0.00 37.35 2.50
4015 4181 8.794553 CCGAGCTAATAAGAAGGTTAGAAGATA 58.205 37.037 0.00 0.00 31.15 1.98
4254 4425 6.777580 AGTTTCAAAATAAGGAGGAAGCAAGA 59.222 34.615 0.00 0.00 0.00 3.02
4394 4569 6.543831 GTGATAACTTACTTAGTCCGGGTCTA 59.456 42.308 0.00 2.07 35.54 2.59
4452 4627 6.731467 ACATACCAACATGGGATCTAGTTTT 58.269 36.000 0.00 0.00 35.81 2.43
4632 4813 2.159156 AGTTTACATATGCACGCGAGGA 60.159 45.455 15.93 6.68 0.00 3.71
4741 4933 0.519077 GTCCGGACGTTAGTCTCGTT 59.481 55.000 20.85 0.00 46.29 3.85
4800 4992 3.343972 GCTCAAAGTTGCGGCTGA 58.656 55.556 0.00 0.00 0.00 4.26
4802 4994 0.386478 GCTCAAAGTTGCGGCTGAAG 60.386 55.000 0.00 0.00 0.00 3.02
4804 4996 0.465460 TCAAAGTTGCGGCTGAAGGT 60.465 50.000 0.00 0.00 0.00 3.50
4806 4998 0.385390 AAAGTTGCGGCTGAAGGTTG 59.615 50.000 0.00 0.00 0.00 3.77
4857 5068 5.192927 TGAACTCACTGTCCATTGTTTCTT 58.807 37.500 0.00 0.00 0.00 2.52
4869 5080 9.362151 TGTCCATTGTTTCTTAAAATCCTACTT 57.638 29.630 0.00 0.00 0.00 2.24
4924 5135 7.484035 AGGAGATAAATTCGTCAAATACAGC 57.516 36.000 0.00 0.00 0.00 4.40
5238 5501 6.764560 GGTTTCTGTCAAACTGTCCTAAAGTA 59.235 38.462 0.00 0.00 0.00 2.24
5281 5544 3.837213 AGATTGCGTTTCTGTTCATGG 57.163 42.857 0.00 0.00 0.00 3.66
5312 5575 2.936202 ACTCTGCAAACACAGTGGAAT 58.064 42.857 5.31 0.00 38.84 3.01
5359 5628 2.033049 GCCGTAGATTAACTGAGCTCGA 59.967 50.000 9.64 0.00 0.00 4.04
5360 5629 3.850374 GCCGTAGATTAACTGAGCTCGAG 60.850 52.174 8.45 8.45 0.00 4.04
5361 5630 3.312973 CCGTAGATTAACTGAGCTCGAGT 59.687 47.826 15.13 10.79 0.00 4.18
5362 5631 4.201930 CCGTAGATTAACTGAGCTCGAGTT 60.202 45.833 24.88 24.88 37.43 3.01
5363 5632 4.965158 CGTAGATTAACTGAGCTCGAGTTC 59.035 45.833 25.10 21.09 35.30 3.01
5364 5633 5.447413 CGTAGATTAACTGAGCTCGAGTTCA 60.447 44.000 27.28 27.28 35.30 3.18
5365 5634 5.590530 AGATTAACTGAGCTCGAGTTCAT 57.409 39.130 28.84 19.00 34.81 2.57
5366 5635 6.701145 AGATTAACTGAGCTCGAGTTCATA 57.299 37.500 28.84 18.04 34.81 2.15
5367 5636 7.283625 AGATTAACTGAGCTCGAGTTCATAT 57.716 36.000 28.84 22.16 34.81 1.78
5368 5637 7.144661 AGATTAACTGAGCTCGAGTTCATATG 58.855 38.462 28.84 20.45 34.81 1.78
5369 5638 4.727507 AACTGAGCTCGAGTTCATATGT 57.272 40.909 28.84 21.04 34.81 2.29
5370 5639 4.039151 ACTGAGCTCGAGTTCATATGTG 57.961 45.455 28.84 19.81 34.81 3.21
5371 5640 2.793790 CTGAGCTCGAGTTCATATGTGC 59.206 50.000 28.84 5.15 34.81 4.57
5372 5641 2.428530 TGAGCTCGAGTTCATATGTGCT 59.571 45.455 25.80 8.02 34.25 4.40
5373 5642 3.049206 GAGCTCGAGTTCATATGTGCTC 58.951 50.000 22.66 11.67 39.70 4.26
5374 5643 6.782670 TGAGCTCGAGTTCATATGTGCTCG 62.783 50.000 25.80 28.46 45.80 5.03
5388 5657 1.459592 GTGCTCGCGTGAACAGTAAAT 59.540 47.619 14.29 0.00 0.00 1.40
5389 5658 2.096417 GTGCTCGCGTGAACAGTAAATT 60.096 45.455 14.29 0.00 0.00 1.82
5390 5659 2.096466 TGCTCGCGTGAACAGTAAATTG 60.096 45.455 13.13 0.00 0.00 2.32
5392 5661 3.722082 GCTCGCGTGAACAGTAAATTGAG 60.722 47.826 13.13 0.00 0.00 3.02
5445 5716 9.434420 TGAATTTTCTTTGTGTCAAACTTTGAT 57.566 25.926 7.47 0.00 42.47 2.57
5471 5742 5.793026 TGTTTTCAATGTTTGCCAAGTTC 57.207 34.783 0.00 0.00 0.00 3.01
5476 5747 3.044986 CAATGTTTGCCAAGTTCTGTCG 58.955 45.455 0.00 0.00 0.00 4.35
5479 5750 3.271729 TGTTTGCCAAGTTCTGTCGTAA 58.728 40.909 0.00 0.00 0.00 3.18
5501 5772 8.233868 CGTAAAATACATTCATGGAAGTTGTGA 58.766 33.333 0.00 0.00 0.00 3.58
5581 5856 1.737838 TGCCATGACTTCCACGAATC 58.262 50.000 0.00 0.00 0.00 2.52
5703 5982 2.101415 CACCCGAACTCATATGAGCTCA 59.899 50.000 28.86 20.79 45.79 4.26
5926 6205 9.956720 CAATATGGTATCAGAATCAAAAGAACC 57.043 33.333 0.00 0.00 0.00 3.62
5927 6206 8.697507 ATATGGTATCAGAATCAAAAGAACCC 57.302 34.615 0.00 0.00 0.00 4.11
5928 6207 6.139679 TGGTATCAGAATCAAAAGAACCCT 57.860 37.500 0.00 0.00 0.00 4.34
5929 6208 6.180472 TGGTATCAGAATCAAAAGAACCCTC 58.820 40.000 0.00 0.00 0.00 4.30
5930 6209 6.012508 TGGTATCAGAATCAAAAGAACCCTCT 60.013 38.462 0.00 0.00 0.00 3.69
5931 6210 6.540551 GGTATCAGAATCAAAAGAACCCTCTC 59.459 42.308 0.00 0.00 0.00 3.20
5932 6211 5.567037 TCAGAATCAAAAGAACCCTCTCA 57.433 39.130 0.00 0.00 0.00 3.27
5933 6212 5.940617 TCAGAATCAAAAGAACCCTCTCAA 58.059 37.500 0.00 0.00 0.00 3.02
5934 6213 5.765182 TCAGAATCAAAAGAACCCTCTCAAC 59.235 40.000 0.00 0.00 0.00 3.18
5935 6214 5.532406 CAGAATCAAAAGAACCCTCTCAACA 59.468 40.000 0.00 0.00 0.00 3.33
5936 6215 6.208204 CAGAATCAAAAGAACCCTCTCAACAT 59.792 38.462 0.00 0.00 0.00 2.71
5937 6216 7.391554 CAGAATCAAAAGAACCCTCTCAACATA 59.608 37.037 0.00 0.00 0.00 2.29
5938 6217 7.609532 AGAATCAAAAGAACCCTCTCAACATAG 59.390 37.037 0.00 0.00 0.00 2.23
5939 6218 6.187727 TCAAAAGAACCCTCTCAACATAGT 57.812 37.500 0.00 0.00 0.00 2.12
5940 6219 7.311092 TCAAAAGAACCCTCTCAACATAGTA 57.689 36.000 0.00 0.00 0.00 1.82
5941 6220 7.918076 TCAAAAGAACCCTCTCAACATAGTAT 58.082 34.615 0.00 0.00 0.00 2.12
5942 6221 8.383175 TCAAAAGAACCCTCTCAACATAGTATT 58.617 33.333 0.00 0.00 0.00 1.89
5943 6222 9.667107 CAAAAGAACCCTCTCAACATAGTATTA 57.333 33.333 0.00 0.00 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.400213 ATTTCAGAGGGTCCACGCAA 59.600 50.000 0.00 0.00 0.00 4.85
1 2 0.400213 AATTTCAGAGGGTCCACGCA 59.600 50.000 0.00 0.00 0.00 5.24
2 3 0.804989 CAATTTCAGAGGGTCCACGC 59.195 55.000 0.00 0.00 0.00 5.34
3 4 2.076863 GACAATTTCAGAGGGTCCACG 58.923 52.381 0.00 0.00 0.00 4.94
4 5 2.076863 CGACAATTTCAGAGGGTCCAC 58.923 52.381 0.00 0.00 0.00 4.02
5 6 1.610624 GCGACAATTTCAGAGGGTCCA 60.611 52.381 0.00 0.00 0.00 4.02
6 7 1.087501 GCGACAATTTCAGAGGGTCC 58.912 55.000 0.00 0.00 0.00 4.46
7 8 1.808411 TGCGACAATTTCAGAGGGTC 58.192 50.000 0.00 0.00 0.00 4.46
8 9 2.270352 TTGCGACAATTTCAGAGGGT 57.730 45.000 0.00 0.00 0.00 4.34
9 10 4.963276 TTATTGCGACAATTTCAGAGGG 57.037 40.909 9.73 0.00 0.00 4.30
10 11 5.796935 CAGTTTATTGCGACAATTTCAGAGG 59.203 40.000 9.73 0.00 0.00 3.69
11 12 5.796935 CCAGTTTATTGCGACAATTTCAGAG 59.203 40.000 9.73 0.00 0.00 3.35
12 13 5.240623 ACCAGTTTATTGCGACAATTTCAGA 59.759 36.000 9.73 0.00 0.00 3.27
13 14 5.343058 CACCAGTTTATTGCGACAATTTCAG 59.657 40.000 9.73 0.46 0.00 3.02
14 15 5.009110 TCACCAGTTTATTGCGACAATTTCA 59.991 36.000 9.73 0.00 0.00 2.69
15 16 5.457140 TCACCAGTTTATTGCGACAATTTC 58.543 37.500 9.73 3.25 0.00 2.17
16 17 5.446143 TCACCAGTTTATTGCGACAATTT 57.554 34.783 9.73 0.00 0.00 1.82
17 18 5.182950 TGATCACCAGTTTATTGCGACAATT 59.817 36.000 9.73 0.00 0.00 2.32
18 19 4.699735 TGATCACCAGTTTATTGCGACAAT 59.300 37.500 9.46 9.46 0.00 2.71
19 20 4.068599 TGATCACCAGTTTATTGCGACAA 58.931 39.130 0.00 0.00 0.00 3.18
20 21 3.669536 TGATCACCAGTTTATTGCGACA 58.330 40.909 0.00 0.00 0.00 4.35
21 22 4.651994 CTTGATCACCAGTTTATTGCGAC 58.348 43.478 0.00 0.00 0.00 5.19
22 23 3.126858 GCTTGATCACCAGTTTATTGCGA 59.873 43.478 0.00 0.00 0.00 5.10
23 24 3.119884 TGCTTGATCACCAGTTTATTGCG 60.120 43.478 0.00 0.00 0.00 4.85
24 25 4.168760 GTGCTTGATCACCAGTTTATTGC 58.831 43.478 0.00 0.00 0.00 3.56
25 26 5.375417 TGTGCTTGATCACCAGTTTATTG 57.625 39.130 0.00 0.00 36.17 1.90
26 27 5.711506 TCATGTGCTTGATCACCAGTTTATT 59.288 36.000 0.00 0.00 36.17 1.40
27 28 5.255687 TCATGTGCTTGATCACCAGTTTAT 58.744 37.500 0.00 0.00 36.17 1.40
28 29 4.650734 TCATGTGCTTGATCACCAGTTTA 58.349 39.130 0.00 0.00 36.17 2.01
29 30 3.489355 TCATGTGCTTGATCACCAGTTT 58.511 40.909 0.00 0.00 36.17 2.66
30 31 3.144657 TCATGTGCTTGATCACCAGTT 57.855 42.857 0.00 0.00 36.17 3.16
31 32 2.865119 TCATGTGCTTGATCACCAGT 57.135 45.000 0.00 0.00 36.17 4.00
32 33 3.692593 TGAATCATGTGCTTGATCACCAG 59.307 43.478 0.00 0.00 35.29 4.00
33 34 3.688235 TGAATCATGTGCTTGATCACCA 58.312 40.909 0.00 0.00 35.29 4.17
34 35 4.913335 ATGAATCATGTGCTTGATCACC 57.087 40.909 0.00 0.00 35.29 4.02
35 36 4.503007 GCAATGAATCATGTGCTTGATCAC 59.497 41.667 17.10 0.00 35.29 3.06
36 37 4.440940 GGCAATGAATCATGTGCTTGATCA 60.441 41.667 20.84 0.00 35.29 2.92
37 38 4.049186 GGCAATGAATCATGTGCTTGATC 58.951 43.478 20.84 8.16 35.29 2.92
38 39 3.490249 CGGCAATGAATCATGTGCTTGAT 60.490 43.478 20.84 0.00 37.96 2.57
39 40 2.159352 CGGCAATGAATCATGTGCTTGA 60.159 45.455 20.84 0.00 37.17 3.02
40 41 2.190161 CGGCAATGAATCATGTGCTTG 58.810 47.619 20.84 14.11 37.17 4.01
41 42 1.820519 ACGGCAATGAATCATGTGCTT 59.179 42.857 20.84 11.52 37.17 3.91
42 43 1.133598 CACGGCAATGAATCATGTGCT 59.866 47.619 20.84 7.73 37.17 4.40
43 44 1.135315 ACACGGCAATGAATCATGTGC 60.135 47.619 16.49 16.49 36.24 4.57
44 45 2.162008 TCACACGGCAATGAATCATGTG 59.838 45.455 9.11 9.11 37.82 3.21
45 46 2.162208 GTCACACGGCAATGAATCATGT 59.838 45.455 0.00 0.00 0.00 3.21
46 47 2.421073 AGTCACACGGCAATGAATCATG 59.579 45.455 0.00 0.00 0.00 3.07
47 48 2.715046 AGTCACACGGCAATGAATCAT 58.285 42.857 0.00 0.00 0.00 2.45
48 49 2.183478 AGTCACACGGCAATGAATCA 57.817 45.000 0.00 0.00 0.00 2.57
49 50 4.882671 ATTAGTCACACGGCAATGAATC 57.117 40.909 0.00 0.00 0.00 2.52
50 51 4.096382 GGAATTAGTCACACGGCAATGAAT 59.904 41.667 0.00 0.00 0.00 2.57
51 52 3.438781 GGAATTAGTCACACGGCAATGAA 59.561 43.478 0.00 0.00 0.00 2.57
52 53 3.006940 GGAATTAGTCACACGGCAATGA 58.993 45.455 0.00 0.00 0.00 2.57
53 54 2.746904 TGGAATTAGTCACACGGCAATG 59.253 45.455 0.00 0.00 0.00 2.82
54 55 3.066291 TGGAATTAGTCACACGGCAAT 57.934 42.857 0.00 0.00 0.00 3.56
55 56 2.552599 TGGAATTAGTCACACGGCAA 57.447 45.000 0.00 0.00 0.00 4.52
56 57 2.236146 AGATGGAATTAGTCACACGGCA 59.764 45.455 0.00 0.00 0.00 5.69
57 58 2.906354 AGATGGAATTAGTCACACGGC 58.094 47.619 0.00 0.00 0.00 5.68
58 59 6.978343 TTAAAGATGGAATTAGTCACACGG 57.022 37.500 0.00 0.00 0.00 4.94
59 60 9.277565 CATTTTAAAGATGGAATTAGTCACACG 57.722 33.333 0.00 0.00 0.00 4.49
64 65 9.573133 CCACACATTTTAAAGATGGAATTAGTC 57.427 33.333 12.13 0.00 0.00 2.59
65 66 9.308000 TCCACACATTTTAAAGATGGAATTAGT 57.692 29.630 12.13 0.00 31.90 2.24
69 70 9.657419 GAAATCCACACATTTTAAAGATGGAAT 57.343 29.630 10.24 2.78 38.22 3.01
70 71 8.869109 AGAAATCCACACATTTTAAAGATGGAA 58.131 29.630 10.24 0.00 38.22 3.53
71 72 8.421249 AGAAATCCACACATTTTAAAGATGGA 57.579 30.769 12.13 10.69 39.02 3.41
72 73 9.573133 GTAGAAATCCACACATTTTAAAGATGG 57.427 33.333 12.13 6.96 0.00 3.51
75 76 8.296713 GCTGTAGAAATCCACACATTTTAAAGA 58.703 33.333 0.00 0.00 0.00 2.52
76 77 8.299570 AGCTGTAGAAATCCACACATTTTAAAG 58.700 33.333 0.00 0.00 0.00 1.85
77 78 8.177119 AGCTGTAGAAATCCACACATTTTAAA 57.823 30.769 0.00 0.00 0.00 1.52
78 79 7.665559 AGAGCTGTAGAAATCCACACATTTTAA 59.334 33.333 0.00 0.00 0.00 1.52
79 80 7.119699 CAGAGCTGTAGAAATCCACACATTTTA 59.880 37.037 0.00 0.00 0.00 1.52
80 81 6.006449 AGAGCTGTAGAAATCCACACATTTT 58.994 36.000 0.00 0.00 0.00 1.82
81 82 5.413833 CAGAGCTGTAGAAATCCACACATTT 59.586 40.000 0.00 0.00 0.00 2.32
82 83 4.940046 CAGAGCTGTAGAAATCCACACATT 59.060 41.667 0.00 0.00 0.00 2.71
83 84 4.511527 CAGAGCTGTAGAAATCCACACAT 58.488 43.478 0.00 0.00 0.00 3.21
84 85 3.306989 CCAGAGCTGTAGAAATCCACACA 60.307 47.826 0.00 0.00 0.00 3.72
85 86 3.055819 TCCAGAGCTGTAGAAATCCACAC 60.056 47.826 0.00 0.00 0.00 3.82
86 87 3.173151 TCCAGAGCTGTAGAAATCCACA 58.827 45.455 0.00 0.00 0.00 4.17
87 88 3.449018 TCTCCAGAGCTGTAGAAATCCAC 59.551 47.826 0.00 0.00 0.00 4.02
88 89 3.449018 GTCTCCAGAGCTGTAGAAATCCA 59.551 47.826 0.00 0.00 27.19 3.41
89 90 3.181470 GGTCTCCAGAGCTGTAGAAATCC 60.181 52.174 0.00 0.00 39.31 3.01
90 91 3.490078 CGGTCTCCAGAGCTGTAGAAATC 60.490 52.174 0.00 0.00 40.17 2.17
91 92 2.428890 CGGTCTCCAGAGCTGTAGAAAT 59.571 50.000 0.00 0.00 40.17 2.17
92 93 1.819288 CGGTCTCCAGAGCTGTAGAAA 59.181 52.381 0.00 0.00 40.17 2.52
93 94 1.464734 CGGTCTCCAGAGCTGTAGAA 58.535 55.000 0.00 0.00 40.17 2.10
94 95 1.032657 GCGGTCTCCAGAGCTGTAGA 61.033 60.000 0.00 0.00 40.17 2.59
95 96 1.034838 AGCGGTCTCCAGAGCTGTAG 61.035 60.000 0.00 0.00 40.17 2.74
96 97 1.000771 AGCGGTCTCCAGAGCTGTA 60.001 57.895 0.00 0.00 40.17 2.74
97 98 2.283532 AGCGGTCTCCAGAGCTGT 60.284 61.111 0.00 0.00 40.17 4.40
98 99 2.282147 CTGAGCGGTCTCCAGAGCTG 62.282 65.000 16.64 0.00 40.39 4.24
99 100 2.036414 TGAGCGGTCTCCAGAGCT 59.964 61.111 16.64 0.00 43.33 4.09
100 101 2.493973 CTGAGCGGTCTCCAGAGC 59.506 66.667 16.64 0.00 38.58 4.09
101 102 1.881903 TTGCTGAGCGGTCTCCAGAG 61.882 60.000 16.64 5.35 38.58 3.35
102 103 1.881903 CTTGCTGAGCGGTCTCCAGA 61.882 60.000 16.64 0.00 38.58 3.86
103 104 1.447489 CTTGCTGAGCGGTCTCCAG 60.447 63.158 16.64 6.80 38.58 3.86
104 105 2.659016 CTTGCTGAGCGGTCTCCA 59.341 61.111 16.64 9.71 38.58 3.86
105 106 2.817396 GCTTGCTGAGCGGTCTCC 60.817 66.667 16.64 7.12 42.46 3.71
113 114 0.720027 CGATCACACAGCTTGCTGAG 59.280 55.000 26.71 21.27 0.00 3.35
114 115 0.033920 ACGATCACACAGCTTGCTGA 59.966 50.000 26.71 7.14 0.00 4.26
115 116 0.165295 CACGATCACACAGCTTGCTG 59.835 55.000 19.62 19.62 0.00 4.41
116 117 0.952497 CCACGATCACACAGCTTGCT 60.952 55.000 0.00 0.00 0.00 3.91
117 118 1.499056 CCACGATCACACAGCTTGC 59.501 57.895 0.00 0.00 0.00 4.01
118 119 0.952497 AGCCACGATCACACAGCTTG 60.952 55.000 0.00 0.00 0.00 4.01
119 120 0.250467 AAGCCACGATCACACAGCTT 60.250 50.000 0.00 0.00 35.82 3.74
120 121 0.671781 GAAGCCACGATCACACAGCT 60.672 55.000 0.00 0.00 0.00 4.24
121 122 0.950555 TGAAGCCACGATCACACAGC 60.951 55.000 0.00 0.00 0.00 4.40
122 123 1.662629 GATGAAGCCACGATCACACAG 59.337 52.381 0.00 0.00 0.00 3.66
123 124 1.001860 TGATGAAGCCACGATCACACA 59.998 47.619 0.00 0.00 0.00 3.72
124 125 1.725641 TGATGAAGCCACGATCACAC 58.274 50.000 0.00 0.00 0.00 3.82
125 126 2.076100 GTTGATGAAGCCACGATCACA 58.924 47.619 0.00 0.00 0.00 3.58
126 127 2.349886 GAGTTGATGAAGCCACGATCAC 59.650 50.000 0.00 0.00 0.00 3.06
127 128 2.621338 GAGTTGATGAAGCCACGATCA 58.379 47.619 0.00 0.00 0.00 2.92
128 129 1.936547 GGAGTTGATGAAGCCACGATC 59.063 52.381 0.00 0.00 0.00 3.69
129 130 1.278985 TGGAGTTGATGAAGCCACGAT 59.721 47.619 0.00 0.00 0.00 3.73
130 131 0.684535 TGGAGTTGATGAAGCCACGA 59.315 50.000 0.00 0.00 0.00 4.35
131 132 1.667724 GATGGAGTTGATGAAGCCACG 59.332 52.381 0.00 0.00 0.00 4.94
132 133 1.667724 CGATGGAGTTGATGAAGCCAC 59.332 52.381 0.00 0.00 0.00 5.01
133 134 2.013563 GCGATGGAGTTGATGAAGCCA 61.014 52.381 0.00 0.00 0.00 4.75
134 135 0.659957 GCGATGGAGTTGATGAAGCC 59.340 55.000 0.00 0.00 0.00 4.35
135 136 0.659957 GGCGATGGAGTTGATGAAGC 59.340 55.000 0.00 0.00 0.00 3.86
136 137 2.208431 GAGGCGATGGAGTTGATGAAG 58.792 52.381 0.00 0.00 0.00 3.02
137 138 1.554617 TGAGGCGATGGAGTTGATGAA 59.445 47.619 0.00 0.00 0.00 2.57
138 139 1.137675 CTGAGGCGATGGAGTTGATGA 59.862 52.381 0.00 0.00 0.00 2.92
139 140 1.579698 CTGAGGCGATGGAGTTGATG 58.420 55.000 0.00 0.00 0.00 3.07
140 141 0.467384 CCTGAGGCGATGGAGTTGAT 59.533 55.000 0.00 0.00 0.00 2.57
141 142 0.904865 ACCTGAGGCGATGGAGTTGA 60.905 55.000 0.00 0.00 0.00 3.18
142 143 0.460987 GACCTGAGGCGATGGAGTTG 60.461 60.000 0.00 0.00 0.00 3.16
143 144 0.616111 AGACCTGAGGCGATGGAGTT 60.616 55.000 0.00 0.00 0.00 3.01
144 145 0.616111 AAGACCTGAGGCGATGGAGT 60.616 55.000 0.00 0.00 0.00 3.85
145 146 0.103937 GAAGACCTGAGGCGATGGAG 59.896 60.000 0.00 0.00 0.00 3.86
146 147 1.667154 CGAAGACCTGAGGCGATGGA 61.667 60.000 0.00 0.00 0.00 3.41
147 148 1.227089 CGAAGACCTGAGGCGATGG 60.227 63.158 0.00 0.00 0.00 3.51
148 149 1.880340 GCGAAGACCTGAGGCGATG 60.880 63.158 0.00 0.00 0.00 3.84
149 150 2.010582 GAGCGAAGACCTGAGGCGAT 62.011 60.000 0.00 0.00 0.00 4.58
150 151 2.676822 AGCGAAGACCTGAGGCGA 60.677 61.111 0.00 0.00 0.00 5.54
151 152 2.202676 GAGCGAAGACCTGAGGCG 60.203 66.667 0.00 0.00 0.00 5.52
152 153 2.185608 GGAGCGAAGACCTGAGGC 59.814 66.667 0.00 0.00 0.00 4.70
153 154 0.682855 AGAGGAGCGAAGACCTGAGG 60.683 60.000 0.00 0.00 36.17 3.86
154 155 0.455410 CAGAGGAGCGAAGACCTGAG 59.545 60.000 0.00 0.00 36.17 3.35
155 156 1.599606 GCAGAGGAGCGAAGACCTGA 61.600 60.000 0.00 0.00 36.17 3.86
156 157 1.153667 GCAGAGGAGCGAAGACCTG 60.154 63.158 0.00 0.00 36.17 4.00
157 158 1.603236 CTGCAGAGGAGCGAAGACCT 61.603 60.000 8.42 0.00 38.38 3.85
158 159 1.153667 CTGCAGAGGAGCGAAGACC 60.154 63.158 8.42 0.00 37.31 3.85
159 160 1.809209 GCTGCAGAGGAGCGAAGAC 60.809 63.158 20.43 0.00 37.31 3.01
160 161 2.575993 GCTGCAGAGGAGCGAAGA 59.424 61.111 20.43 0.00 37.31 2.87
161 162 2.511145 GGCTGCAGAGGAGCGAAG 60.511 66.667 20.43 0.00 37.32 3.79
162 163 4.441695 CGGCTGCAGAGGAGCGAA 62.442 66.667 20.43 0.00 37.32 4.70
192 193 4.016706 GTGGTGGGGGAGGTGACG 62.017 72.222 0.00 0.00 0.00 4.35
193 194 2.529389 AGTGGTGGGGGAGGTGAC 60.529 66.667 0.00 0.00 0.00 3.67
194 195 2.529136 CAGTGGTGGGGGAGGTGA 60.529 66.667 0.00 0.00 0.00 4.02
195 196 3.650950 CCAGTGGTGGGGGAGGTG 61.651 72.222 0.00 0.00 40.67 4.00
196 197 3.869934 TCCAGTGGTGGGGGAGGT 61.870 66.667 9.54 0.00 45.11 3.85
197 198 3.011517 CTCCAGTGGTGGGGGAGG 61.012 72.222 9.54 0.00 41.33 4.30
198 199 3.721706 GCTCCAGTGGTGGGGGAG 61.722 72.222 9.54 0.00 45.92 4.30
202 203 1.856539 AATCAGGCTCCAGTGGTGGG 61.857 60.000 9.54 2.22 45.11 4.61
203 204 0.911769 TAATCAGGCTCCAGTGGTGG 59.088 55.000 9.54 4.82 46.63 4.61
204 205 1.833630 TCTAATCAGGCTCCAGTGGTG 59.166 52.381 9.54 8.11 0.00 4.17
205 206 2.114616 CTCTAATCAGGCTCCAGTGGT 58.885 52.381 9.54 0.00 0.00 4.16
206 207 2.102252 GACTCTAATCAGGCTCCAGTGG 59.898 54.545 1.40 1.40 0.00 4.00
207 208 2.223688 CGACTCTAATCAGGCTCCAGTG 60.224 54.545 0.00 0.00 0.00 3.66
208 209 2.028130 CGACTCTAATCAGGCTCCAGT 58.972 52.381 0.00 0.00 0.00 4.00
209 210 1.269517 GCGACTCTAATCAGGCTCCAG 60.270 57.143 0.00 0.00 0.00 3.86
210 211 0.747255 GCGACTCTAATCAGGCTCCA 59.253 55.000 0.00 0.00 0.00 3.86
211 212 1.036707 AGCGACTCTAATCAGGCTCC 58.963 55.000 0.00 0.00 0.00 4.70
212 213 2.880963 AAGCGACTCTAATCAGGCTC 57.119 50.000 0.00 0.00 0.00 4.70
213 214 3.618690 AAAAGCGACTCTAATCAGGCT 57.381 42.857 0.00 0.00 0.00 4.58
231 232 3.517500 ACAAGCCCCAAAGACAAGAAAAA 59.482 39.130 0.00 0.00 0.00 1.94
232 233 3.103742 ACAAGCCCCAAAGACAAGAAAA 58.896 40.909 0.00 0.00 0.00 2.29
233 234 2.745968 ACAAGCCCCAAAGACAAGAAA 58.254 42.857 0.00 0.00 0.00 2.52
234 235 2.452600 ACAAGCCCCAAAGACAAGAA 57.547 45.000 0.00 0.00 0.00 2.52
235 236 2.430332 CAAACAAGCCCCAAAGACAAGA 59.570 45.455 0.00 0.00 0.00 3.02
236 237 2.483538 CCAAACAAGCCCCAAAGACAAG 60.484 50.000 0.00 0.00 0.00 3.16
237 238 1.484240 CCAAACAAGCCCCAAAGACAA 59.516 47.619 0.00 0.00 0.00 3.18
238 239 1.118838 CCAAACAAGCCCCAAAGACA 58.881 50.000 0.00 0.00 0.00 3.41
239 240 0.249868 GCCAAACAAGCCCCAAAGAC 60.250 55.000 0.00 0.00 0.00 3.01
240 241 0.398381 AGCCAAACAAGCCCCAAAGA 60.398 50.000 0.00 0.00 0.00 2.52
241 242 0.249996 CAGCCAAACAAGCCCCAAAG 60.250 55.000 0.00 0.00 0.00 2.77
242 243 0.980231 ACAGCCAAACAAGCCCCAAA 60.980 50.000 0.00 0.00 0.00 3.28
243 244 1.382420 ACAGCCAAACAAGCCCCAA 60.382 52.632 0.00 0.00 0.00 4.12
244 245 2.132996 CACAGCCAAACAAGCCCCA 61.133 57.895 0.00 0.00 0.00 4.96
245 246 2.736531 CACAGCCAAACAAGCCCC 59.263 61.111 0.00 0.00 0.00 5.80
246 247 2.029518 GCACAGCCAAACAAGCCC 59.970 61.111 0.00 0.00 0.00 5.19
265 266 1.968050 ATAAACGAGGTCCGGCTGGG 61.968 60.000 12.87 0.00 43.93 4.45
266 267 0.107848 AATAAACGAGGTCCGGCTGG 60.108 55.000 4.71 4.71 43.93 4.85
267 268 1.396996 CAAATAAACGAGGTCCGGCTG 59.603 52.381 0.00 0.00 43.93 4.85
268 269 1.002773 ACAAATAAACGAGGTCCGGCT 59.997 47.619 0.00 0.00 43.93 5.52
269 270 1.445871 ACAAATAAACGAGGTCCGGC 58.554 50.000 0.00 0.00 43.93 6.13
270 271 2.809696 ACAACAAATAAACGAGGTCCGG 59.190 45.455 0.00 0.00 43.93 5.14
271 272 4.460505 GAACAACAAATAAACGAGGTCCG 58.539 43.478 0.00 0.00 45.44 4.79
272 273 4.024641 ACGAACAACAAATAAACGAGGTCC 60.025 41.667 0.00 0.00 0.00 4.46
273 274 5.086888 ACGAACAACAAATAAACGAGGTC 57.913 39.130 0.00 0.00 0.00 3.85
274 275 5.050159 GGTACGAACAACAAATAAACGAGGT 60.050 40.000 0.00 0.00 0.00 3.85
275 276 5.376537 GGTACGAACAACAAATAAACGAGG 58.623 41.667 0.00 0.00 0.00 4.63
276 277 5.178067 AGGGTACGAACAACAAATAAACGAG 59.822 40.000 0.00 0.00 0.00 4.18
277 278 5.050227 CAGGGTACGAACAACAAATAAACGA 60.050 40.000 0.00 0.00 0.00 3.85
278 279 5.050227 TCAGGGTACGAACAACAAATAAACG 60.050 40.000 0.00 0.00 0.00 3.60
279 280 6.303021 TCAGGGTACGAACAACAAATAAAC 57.697 37.500 0.00 0.00 0.00 2.01
280 281 6.543100 AGTTCAGGGTACGAACAACAAATAAA 59.457 34.615 12.68 0.00 44.22 1.40
281 282 6.056884 AGTTCAGGGTACGAACAACAAATAA 58.943 36.000 12.68 0.00 44.22 1.40
282 283 5.613329 AGTTCAGGGTACGAACAACAAATA 58.387 37.500 12.68 0.00 44.22 1.40
283 284 4.457466 AGTTCAGGGTACGAACAACAAAT 58.543 39.130 12.68 0.00 44.22 2.32
284 285 3.876341 AGTTCAGGGTACGAACAACAAA 58.124 40.909 12.68 0.00 44.22 2.83
285 286 3.547054 AGTTCAGGGTACGAACAACAA 57.453 42.857 12.68 0.00 44.22 2.83
286 287 3.199677 CAAGTTCAGGGTACGAACAACA 58.800 45.455 12.68 0.00 44.22 3.33
287 288 3.200483 ACAAGTTCAGGGTACGAACAAC 58.800 45.455 12.68 2.64 44.22 3.32
288 289 3.547054 ACAAGTTCAGGGTACGAACAA 57.453 42.857 12.68 0.00 44.22 2.83
289 290 3.638160 AGTACAAGTTCAGGGTACGAACA 59.362 43.478 12.68 0.00 44.22 3.18
290 291 4.022503 AGAGTACAAGTTCAGGGTACGAAC 60.023 45.833 0.00 4.49 41.62 3.95
291 292 4.147321 AGAGTACAAGTTCAGGGTACGAA 58.853 43.478 0.00 0.00 41.62 3.85
292 293 3.755378 GAGAGTACAAGTTCAGGGTACGA 59.245 47.826 0.00 0.00 41.62 3.43
293 294 3.504906 TGAGAGTACAAGTTCAGGGTACG 59.495 47.826 0.00 0.00 41.62 3.67
294 295 5.662674 ATGAGAGTACAAGTTCAGGGTAC 57.337 43.478 0.00 0.00 38.08 3.34
295 296 7.973048 ATTATGAGAGTACAAGTTCAGGGTA 57.027 36.000 0.00 0.00 0.00 3.69
296 297 6.875972 ATTATGAGAGTACAAGTTCAGGGT 57.124 37.500 0.00 0.00 0.00 4.34
297 298 7.106239 ACAATTATGAGAGTACAAGTTCAGGG 58.894 38.462 0.00 0.00 0.00 4.45
298 299 8.446273 CAACAATTATGAGAGTACAAGTTCAGG 58.554 37.037 0.00 0.00 0.00 3.86
299 300 8.446273 CCAACAATTATGAGAGTACAAGTTCAG 58.554 37.037 0.00 0.00 0.00 3.02
300 301 8.154203 TCCAACAATTATGAGAGTACAAGTTCA 58.846 33.333 0.00 0.00 0.00 3.18
301 302 8.547967 TCCAACAATTATGAGAGTACAAGTTC 57.452 34.615 0.00 0.00 0.00 3.01
302 303 8.950210 CATCCAACAATTATGAGAGTACAAGTT 58.050 33.333 0.00 0.00 0.00 2.66
303 304 7.066284 GCATCCAACAATTATGAGAGTACAAGT 59.934 37.037 0.00 0.00 0.00 3.16
304 305 7.281774 AGCATCCAACAATTATGAGAGTACAAG 59.718 37.037 0.00 0.00 0.00 3.16
305 306 7.112122 AGCATCCAACAATTATGAGAGTACAA 58.888 34.615 0.00 0.00 0.00 2.41
306 307 6.653020 AGCATCCAACAATTATGAGAGTACA 58.347 36.000 0.00 0.00 0.00 2.90
307 308 7.412853 CAAGCATCCAACAATTATGAGAGTAC 58.587 38.462 0.00 0.00 0.00 2.73
308 309 6.543465 CCAAGCATCCAACAATTATGAGAGTA 59.457 38.462 0.00 0.00 0.00 2.59
309 310 5.359009 CCAAGCATCCAACAATTATGAGAGT 59.641 40.000 0.00 0.00 0.00 3.24
310 311 5.735354 GCCAAGCATCCAACAATTATGAGAG 60.735 44.000 0.00 0.00 0.00 3.20
311 312 4.098349 GCCAAGCATCCAACAATTATGAGA 59.902 41.667 0.00 0.00 0.00 3.27
312 313 4.365723 GCCAAGCATCCAACAATTATGAG 58.634 43.478 0.00 0.00 0.00 2.90
313 314 3.181488 CGCCAAGCATCCAACAATTATGA 60.181 43.478 0.00 0.00 0.00 2.15
314 315 3.117794 CGCCAAGCATCCAACAATTATG 58.882 45.455 0.00 0.00 0.00 1.90
315 316 2.101249 CCGCCAAGCATCCAACAATTAT 59.899 45.455 0.00 0.00 0.00 1.28
316 317 1.476085 CCGCCAAGCATCCAACAATTA 59.524 47.619 0.00 0.00 0.00 1.40
317 318 0.247185 CCGCCAAGCATCCAACAATT 59.753 50.000 0.00 0.00 0.00 2.32
318 319 0.899717 ACCGCCAAGCATCCAACAAT 60.900 50.000 0.00 0.00 0.00 2.71
319 320 1.112315 AACCGCCAAGCATCCAACAA 61.112 50.000 0.00 0.00 0.00 2.83
320 321 0.250945 TAACCGCCAAGCATCCAACA 60.251 50.000 0.00 0.00 0.00 3.33
321 322 1.102978 ATAACCGCCAAGCATCCAAC 58.897 50.000 0.00 0.00 0.00 3.77
322 323 1.102154 CATAACCGCCAAGCATCCAA 58.898 50.000 0.00 0.00 0.00 3.53
323 324 1.383456 GCATAACCGCCAAGCATCCA 61.383 55.000 0.00 0.00 0.00 3.41
324 325 1.103398 AGCATAACCGCCAAGCATCC 61.103 55.000 0.00 0.00 0.00 3.51
325 326 0.740737 AAGCATAACCGCCAAGCATC 59.259 50.000 0.00 0.00 0.00 3.91
326 327 1.185315 AAAGCATAACCGCCAAGCAT 58.815 45.000 0.00 0.00 0.00 3.79
327 328 1.827681 TAAAGCATAACCGCCAAGCA 58.172 45.000 0.00 0.00 0.00 3.91
328 329 4.561735 TTATAAAGCATAACCGCCAAGC 57.438 40.909 0.00 0.00 0.00 4.01
359 360 1.430075 TCCTTACAAAAAGGGTCCCCC 59.570 52.381 3.51 0.00 45.90 5.40
360 361 2.984435 TCCTTACAAAAAGGGTCCCC 57.016 50.000 3.51 0.00 37.99 4.81
361 362 2.561419 GCTTCCTTACAAAAAGGGTCCC 59.439 50.000 0.00 0.00 37.99 4.46
362 363 3.497332 AGCTTCCTTACAAAAAGGGTCC 58.503 45.455 4.05 0.00 37.99 4.46
363 364 4.142038 TGAGCTTCCTTACAAAAAGGGTC 58.858 43.478 4.05 0.00 37.99 4.46
364 365 4.141251 TCTGAGCTTCCTTACAAAAAGGGT 60.141 41.667 4.05 0.00 37.99 4.34
365 366 4.398319 TCTGAGCTTCCTTACAAAAAGGG 58.602 43.478 4.05 0.00 37.99 3.95
366 367 6.391227 TTTCTGAGCTTCCTTACAAAAAGG 57.609 37.500 0.00 0.00 38.78 3.11
367 368 9.399403 GTATTTTCTGAGCTTCCTTACAAAAAG 57.601 33.333 0.00 0.00 0.00 2.27
368 369 9.131791 AGTATTTTCTGAGCTTCCTTACAAAAA 57.868 29.630 0.00 0.00 0.00 1.94
369 370 8.691661 AGTATTTTCTGAGCTTCCTTACAAAA 57.308 30.769 0.00 0.00 0.00 2.44
370 371 9.787435 TTAGTATTTTCTGAGCTTCCTTACAAA 57.213 29.630 0.00 0.00 0.00 2.83
371 372 9.436957 CTTAGTATTTTCTGAGCTTCCTTACAA 57.563 33.333 0.00 0.00 0.00 2.41
372 373 8.594550 ACTTAGTATTTTCTGAGCTTCCTTACA 58.405 33.333 0.00 0.00 0.00 2.41
381 382 7.334671 AGCCAACTTACTTAGTATTTTCTGAGC 59.665 37.037 0.00 0.00 35.54 4.26
395 396 6.267699 AGCAAGGAAAATTAGCCAACTTACTT 59.732 34.615 0.00 0.00 0.00 2.24
397 398 6.025749 AGCAAGGAAAATTAGCCAACTTAC 57.974 37.500 0.00 0.00 0.00 2.34
424 425 7.178274 TCCAACAAATCACATACAGGCTAAAAT 59.822 33.333 0.00 0.00 0.00 1.82
449 450 5.576384 GCATCAAGAGAGATATGATCCGTTC 59.424 44.000 0.00 0.00 31.65 3.95
452 453 5.069501 TGCATCAAGAGAGATATGATCCG 57.930 43.478 0.00 0.00 31.65 4.18
529 532 0.750182 AACCCCAACGAACACACCAG 60.750 55.000 0.00 0.00 0.00 4.00
540 543 5.221106 GGACTTGTAGTTTGTAAACCCCAAC 60.221 44.000 4.00 0.06 39.71 3.77
614 617 2.553602 CTGCTTGTATTGTGCACTCCAA 59.446 45.455 19.41 13.32 32.91 3.53
616 619 2.426522 TCTGCTTGTATTGTGCACTCC 58.573 47.619 19.41 3.64 32.91 3.85
710 713 5.004535 GCGAACTGTGTCTTGTACTATTAGC 59.995 44.000 0.00 0.00 0.00 3.09
712 715 5.404946 GGCGAACTGTGTCTTGTACTATTA 58.595 41.667 0.00 0.00 0.00 0.98
713 716 4.243270 GGCGAACTGTGTCTTGTACTATT 58.757 43.478 0.00 0.00 0.00 1.73
714 717 3.368116 GGGCGAACTGTGTCTTGTACTAT 60.368 47.826 0.00 0.00 0.00 2.12
728 731 1.303282 GGGGAATCTTGGGCGAACT 59.697 57.895 0.00 0.00 0.00 3.01
758 762 1.542547 CCGTTGCTCACTGTTTACCCT 60.543 52.381 0.00 0.00 0.00 4.34
878 891 3.611766 AACAGCTAGGTGTATGTGTCC 57.388 47.619 26.75 0.00 0.00 4.02
880 893 3.835978 TGGTAACAGCTAGGTGTATGTGT 59.164 43.478 26.75 13.92 46.17 3.72
991 1004 3.077359 CCGCTTTCTCCATCTTCAGTTT 58.923 45.455 0.00 0.00 0.00 2.66
1043 1056 2.718487 ATCACCCTTGCAGCCAAGCA 62.718 55.000 0.00 0.00 45.65 3.91
1044 1057 1.941999 GATCACCCTTGCAGCCAAGC 61.942 60.000 0.00 0.00 45.65 4.01
1082 1095 4.551126 GTGATTGACGCTTTTCAGAAATCG 59.449 41.667 13.45 13.45 39.52 3.34
1124 1137 9.281371 GAATGTTTTTAACACTAAGGGAGTACT 57.719 33.333 0.00 0.00 45.50 2.73
1125 1138 9.281371 AGAATGTTTTTAACACTAAGGGAGTAC 57.719 33.333 0.00 0.00 45.50 2.73
1126 1139 9.856162 AAGAATGTTTTTAACACTAAGGGAGTA 57.144 29.630 0.00 0.00 45.50 2.59
1143 1156 9.712305 CCTCCGTCTCATAATATAAGAATGTTT 57.288 33.333 0.00 0.00 0.00 2.83
1144 1157 8.314751 CCCTCCGTCTCATAATATAAGAATGTT 58.685 37.037 0.00 0.00 0.00 2.71
1145 1158 7.674348 TCCCTCCGTCTCATAATATAAGAATGT 59.326 37.037 0.00 0.00 0.00 2.71
1146 1159 8.067751 TCCCTCCGTCTCATAATATAAGAATG 57.932 38.462 0.00 0.00 0.00 2.67
1147 1160 7.896496 ACTCCCTCCGTCTCATAATATAAGAAT 59.104 37.037 0.00 0.00 0.00 2.40
1148 1161 7.239438 ACTCCCTCCGTCTCATAATATAAGAA 58.761 38.462 0.00 0.00 0.00 2.52
1149 1162 6.791371 ACTCCCTCCGTCTCATAATATAAGA 58.209 40.000 0.00 0.00 0.00 2.10
1150 1163 8.577048 TTACTCCCTCCGTCTCATAATATAAG 57.423 38.462 0.00 0.00 0.00 1.73
1151 1164 9.543231 AATTACTCCCTCCGTCTCATAATATAA 57.457 33.333 0.00 0.00 0.00 0.98
1152 1165 9.543231 AAATTACTCCCTCCGTCTCATAATATA 57.457 33.333 0.00 0.00 0.00 0.86
1153 1166 8.437274 AAATTACTCCCTCCGTCTCATAATAT 57.563 34.615 0.00 0.00 0.00 1.28
1154 1167 7.850935 AAATTACTCCCTCCGTCTCATAATA 57.149 36.000 0.00 0.00 0.00 0.98
1155 1168 6.749036 AAATTACTCCCTCCGTCTCATAAT 57.251 37.500 0.00 0.00 0.00 1.28
1156 1169 6.555463 AAAATTACTCCCTCCGTCTCATAA 57.445 37.500 0.00 0.00 0.00 1.90
1157 1170 6.555463 AAAAATTACTCCCTCCGTCTCATA 57.445 37.500 0.00 0.00 0.00 2.15
1158 1171 5.437191 AAAAATTACTCCCTCCGTCTCAT 57.563 39.130 0.00 0.00 0.00 2.90
1159 1172 4.903045 AAAAATTACTCCCTCCGTCTCA 57.097 40.909 0.00 0.00 0.00 3.27
1160 1173 6.168389 TGTTAAAAATTACTCCCTCCGTCTC 58.832 40.000 0.00 0.00 0.00 3.36
1161 1174 6.117975 TGTTAAAAATTACTCCCTCCGTCT 57.882 37.500 0.00 0.00 0.00 4.18
1162 1175 6.348786 GGTTGTTAAAAATTACTCCCTCCGTC 60.349 42.308 0.00 0.00 0.00 4.79
1163 1176 5.474532 GGTTGTTAAAAATTACTCCCTCCGT 59.525 40.000 0.00 0.00 0.00 4.69
1164 1177 5.106038 GGGTTGTTAAAAATTACTCCCTCCG 60.106 44.000 0.00 0.00 0.00 4.63
1165 1178 5.776208 TGGGTTGTTAAAAATTACTCCCTCC 59.224 40.000 3.37 0.00 33.54 4.30
1166 1179 6.904463 TGGGTTGTTAAAAATTACTCCCTC 57.096 37.500 3.37 0.00 33.54 4.30
1167 1180 7.246027 AGATGGGTTGTTAAAAATTACTCCCT 58.754 34.615 3.37 0.00 33.54 4.20
1168 1181 7.177744 TGAGATGGGTTGTTAAAAATTACTCCC 59.822 37.037 0.00 0.00 33.24 4.30
1169 1182 8.117813 TGAGATGGGTTGTTAAAAATTACTCC 57.882 34.615 0.00 0.00 0.00 3.85
1170 1183 9.626045 CTTGAGATGGGTTGTTAAAAATTACTC 57.374 33.333 0.00 0.00 0.00 2.59
1171 1184 8.585018 CCTTGAGATGGGTTGTTAAAAATTACT 58.415 33.333 0.00 0.00 0.00 2.24
1177 1190 4.830600 GGTCCTTGAGATGGGTTGTTAAAA 59.169 41.667 0.00 0.00 0.00 1.52
1178 1191 4.141135 TGGTCCTTGAGATGGGTTGTTAAA 60.141 41.667 0.00 0.00 0.00 1.52
1184 1197 1.747444 AGTGGTCCTTGAGATGGGTT 58.253 50.000 0.00 0.00 0.00 4.11
1274 1287 9.547753 CCTTCATTAGTTAAGTATGCATGTACT 57.452 33.333 10.16 2.34 36.50 2.73
1275 1288 9.542462 TCCTTCATTAGTTAAGTATGCATGTAC 57.458 33.333 10.16 0.00 0.00 2.90
1310 1347 3.819337 AGGCTGGATCAATTCATTCATCG 59.181 43.478 0.00 0.00 0.00 3.84
1312 1349 6.040166 GTGTTAGGCTGGATCAATTCATTCAT 59.960 38.462 0.00 0.00 0.00 2.57
1313 1350 5.357878 GTGTTAGGCTGGATCAATTCATTCA 59.642 40.000 0.00 0.00 0.00 2.57
1314 1351 5.357878 TGTGTTAGGCTGGATCAATTCATTC 59.642 40.000 0.00 0.00 0.00 2.67
1323 1360 3.620488 TGGAAATGTGTTAGGCTGGATC 58.380 45.455 0.00 0.00 0.00 3.36
1427 1464 2.428890 GTGTCATCGTCTGATCTTCCCT 59.571 50.000 0.00 0.00 35.97 4.20
1464 1501 1.406219 CGTGCACCTTCATCTCGTCG 61.406 60.000 12.15 0.00 0.00 5.12
1809 1846 4.615588 GGATGGATCCTTCTTACTGAGG 57.384 50.000 23.02 0.00 43.73 3.86
1841 1878 9.357161 ACACTCTAGCTAGCTTAAATACAGTAT 57.643 33.333 24.88 1.27 0.00 2.12
1843 1880 7.648039 ACACTCTAGCTAGCTTAAATACAGT 57.352 36.000 24.88 11.10 0.00 3.55
1844 1881 8.191446 TCAACACTCTAGCTAGCTTAAATACAG 58.809 37.037 24.88 12.35 0.00 2.74
1845 1882 8.063200 TCAACACTCTAGCTAGCTTAAATACA 57.937 34.615 24.88 1.10 0.00 2.29
1878 1915 4.151689 CCAATCAAGAGCATGCAAAACTTG 59.848 41.667 25.87 25.87 39.13 3.16
1930 1967 3.118223 CCCTAAGGATCTTCACCCTTGTC 60.118 52.174 0.00 0.00 42.34 3.18
1948 1985 3.101643 AGTACAGATGCACAGTCCCTA 57.898 47.619 0.00 0.00 0.00 3.53
1966 2003 3.454812 AGTGTGTGTGAAGGAACCTTAGT 59.545 43.478 6.06 0.00 36.26 2.24
1969 2006 2.421529 GGAGTGTGTGTGAAGGAACCTT 60.422 50.000 5.74 5.74 39.23 3.50
1975 2012 1.432514 CATCGGAGTGTGTGTGAAGG 58.567 55.000 0.00 0.00 0.00 3.46
1996 2035 9.712305 ACCTTAATATCTCTATGTACAATGCAC 57.288 33.333 0.00 0.00 0.00 4.57
2039 2078 4.422073 TGCTTATGTTGAGGGATCGAAT 57.578 40.909 0.00 0.00 0.00 3.34
2061 2100 3.193267 TAAGATGGCTTCGCAAATTTGCT 59.807 39.130 33.68 18.01 42.37 3.91
2208 2335 3.386543 GATGGTTCCCCTCACATCG 57.613 57.895 0.00 0.00 31.57 3.84
2229 2356 5.243060 TGTTATGTACTCCGGATCCATGTAG 59.757 44.000 13.41 5.38 0.00 2.74
2268 2396 2.474359 GCTGTAGATATCACTTGCGCAG 59.526 50.000 11.31 7.81 0.00 5.18
2410 2541 3.368531 GCCGAGTTCCTTCTCAGTGTAAT 60.369 47.826 0.00 0.00 34.46 1.89
2437 2569 9.918630 CAATGGTGAGAATAACTTCTGAAATTT 57.081 29.630 0.00 0.00 41.87 1.82
2508 2643 0.652592 CGGAGAGCAAATTAGGTGCG 59.347 55.000 0.00 0.00 46.86 5.34
2521 2656 2.928731 GCCTTGAGACAAGAACGGAGAG 60.929 54.545 12.25 0.00 0.00 3.20
2543 2678 6.702716 TTTTTCCCAGTTACGACATCTTTT 57.297 33.333 0.00 0.00 0.00 2.27
2675 2810 6.347079 CGTACACATCTTTTATTGTTGGACGT 60.347 38.462 0.00 0.00 32.02 4.34
2744 2879 3.295785 TGCAAAAATCGTGTCAATGACG 58.704 40.909 9.00 0.00 34.95 4.35
2745 2880 4.916831 TGATGCAAAAATCGTGTCAATGAC 59.083 37.500 6.41 6.41 0.00 3.06
2881 3017 9.283768 TCATATTCAAGAACTGCTTTTAGTGAA 57.716 29.630 0.00 0.00 33.60 3.18
2918 3054 6.403855 CGGCAGGATTTTAGTTTTTCCGAATA 60.404 38.462 0.00 0.00 35.61 1.75
2919 3055 5.621329 CGGCAGGATTTTAGTTTTTCCGAAT 60.621 40.000 0.00 0.00 35.61 3.34
2920 3056 4.320641 CGGCAGGATTTTAGTTTTTCCGAA 60.321 41.667 0.00 0.00 35.61 4.30
2921 3057 3.189702 CGGCAGGATTTTAGTTTTTCCGA 59.810 43.478 0.00 0.00 35.61 4.55
2922 3058 3.189702 TCGGCAGGATTTTAGTTTTTCCG 59.810 43.478 0.00 0.00 33.35 4.30
2923 3059 4.482386 GTCGGCAGGATTTTAGTTTTTCC 58.518 43.478 0.00 0.00 0.00 3.13
2924 3060 4.482386 GGTCGGCAGGATTTTAGTTTTTC 58.518 43.478 0.00 0.00 0.00 2.29
2946 3082 0.109597 GAACCTGTTGCAATCTGCCG 60.110 55.000 0.59 0.00 44.23 5.69
3011 3147 4.996758 GTGATTAGCAAAAAGGGTGCAAAT 59.003 37.500 0.00 0.00 44.74 2.32
3103 3240 5.410355 AACATGCATTGGCTAAAAGTGAT 57.590 34.783 0.00 0.00 41.91 3.06
3111 3248 1.462616 AAGCGAACATGCATTGGCTA 58.537 45.000 9.57 0.00 42.10 3.93
3118 3255 1.882912 AGTGAGAAAGCGAACATGCA 58.117 45.000 0.00 0.00 37.31 3.96
3122 3259 4.377021 ACATGTAAGTGAGAAAGCGAACA 58.623 39.130 0.00 0.00 0.00 3.18
3123 3260 4.992381 ACATGTAAGTGAGAAAGCGAAC 57.008 40.909 0.00 0.00 0.00 3.95
3124 3261 5.063438 GCATACATGTAAGTGAGAAAGCGAA 59.937 40.000 10.14 0.00 0.00 4.70
3408 3557 3.960102 TGGATGACCATTTTTATGGCTCC 59.040 43.478 4.13 8.51 45.47 4.70
3524 3673 9.973450 TGTGTTAACATGCTATTTACACAAATT 57.027 25.926 12.26 0.00 35.88 1.82
3860 4024 3.938963 GCACCAAAGTTATCAGGATCGAA 59.061 43.478 0.00 0.00 0.00 3.71
4015 4181 3.181423 ACACAAATATTCCCGGGGCATAT 60.181 43.478 23.50 19.17 0.00 1.78
4205 4375 8.034804 ACTTCAAAATGTTTTGTAGCTCAAACT 58.965 29.630 18.66 2.27 44.40 2.66
4249 4420 4.536065 TGAAACGTTGATGTCATTCTTGC 58.464 39.130 0.00 0.00 0.00 4.01
4254 4425 5.760253 AGAAGACTGAAACGTTGATGTCATT 59.240 36.000 21.44 15.18 0.00 2.57
4679 4871 2.550978 CGCACGATCTAATCCCACTTT 58.449 47.619 0.00 0.00 0.00 2.66
4681 4873 0.389391 CCGCACGATCTAATCCCACT 59.611 55.000 0.00 0.00 0.00 4.00
4797 4989 5.411361 TCGGATCAAAATACACAACCTTCAG 59.589 40.000 0.00 0.00 0.00 3.02
4798 4990 5.309638 TCGGATCAAAATACACAACCTTCA 58.690 37.500 0.00 0.00 0.00 3.02
4799 4991 5.163754 CCTCGGATCAAAATACACAACCTTC 60.164 44.000 0.00 0.00 0.00 3.46
4800 4992 4.700213 CCTCGGATCAAAATACACAACCTT 59.300 41.667 0.00 0.00 0.00 3.50
4802 4994 3.377172 CCCTCGGATCAAAATACACAACC 59.623 47.826 0.00 0.00 0.00 3.77
4804 4996 4.019681 ACTCCCTCGGATCAAAATACACAA 60.020 41.667 0.00 0.00 0.00 3.33
4806 4998 4.138487 ACTCCCTCGGATCAAAATACAC 57.862 45.455 0.00 0.00 0.00 2.90
4857 5068 8.495361 TGCGCAAGTATAAAAGTAGGATTTTA 57.505 30.769 8.16 0.00 38.10 1.52
4869 5080 3.536956 AGTAGCCTGCGCAAGTATAAA 57.463 42.857 13.05 0.00 41.68 1.40
4924 5135 7.148356 ACACATCTATCACTTTTGCATACTGTG 60.148 37.037 0.00 0.00 35.21 3.66
5072 5283 4.902448 ACCTAGAGGGAATATCACAGTTCC 59.098 45.833 0.00 0.00 42.51 3.62
5281 5544 3.748048 TGTTTGCAGAGTAGCATTCTGAC 59.252 43.478 14.09 6.11 45.19 3.51
5312 5575 3.610040 ATGTGCTTCTGTCGATGGTAA 57.390 42.857 0.00 0.00 0.00 2.85
5342 5605 6.701145 ATGAACTCGAGCTCAGTTAATCTA 57.299 37.500 21.91 12.63 34.10 1.98
5359 5628 1.135112 TCACGCGAGCACATATGAACT 60.135 47.619 15.93 5.82 0.00 3.01
5360 5629 1.277326 TCACGCGAGCACATATGAAC 58.723 50.000 15.93 0.40 0.00 3.18
5361 5630 1.658596 GTTCACGCGAGCACATATGAA 59.341 47.619 15.93 6.79 0.00 2.57
5362 5631 1.277326 GTTCACGCGAGCACATATGA 58.723 50.000 15.93 0.00 0.00 2.15
5363 5632 0.998669 TGTTCACGCGAGCACATATG 59.001 50.000 15.93 0.00 0.00 1.78
5364 5633 1.280982 CTGTTCACGCGAGCACATAT 58.719 50.000 15.93 0.00 0.00 1.78
5365 5634 0.038618 ACTGTTCACGCGAGCACATA 60.039 50.000 15.93 0.00 0.00 2.29
5366 5635 0.038618 TACTGTTCACGCGAGCACAT 60.039 50.000 15.93 4.88 0.00 3.21
5367 5636 0.249114 TTACTGTTCACGCGAGCACA 60.249 50.000 15.93 11.63 0.00 4.57
5368 5637 0.856641 TTTACTGTTCACGCGAGCAC 59.143 50.000 15.93 6.16 0.00 4.40
5369 5638 1.790755 ATTTACTGTTCACGCGAGCA 58.209 45.000 15.93 4.74 0.00 4.26
5370 5639 2.156891 TCAATTTACTGTTCACGCGAGC 59.843 45.455 15.93 0.00 0.00 5.03
5371 5640 3.673338 TCTCAATTTACTGTTCACGCGAG 59.327 43.478 15.93 4.59 0.00 5.03
5372 5641 3.427528 GTCTCAATTTACTGTTCACGCGA 59.572 43.478 15.93 0.00 0.00 5.87
5373 5642 3.183574 TGTCTCAATTTACTGTTCACGCG 59.816 43.478 3.53 3.53 0.00 6.01
5374 5643 4.725556 TGTCTCAATTTACTGTTCACGC 57.274 40.909 0.00 0.00 0.00 5.34
5415 5686 9.487790 AAGTTTGACACAAAGAAAATTCAGAAA 57.512 25.926 0.00 0.00 0.00 2.52
5445 5716 7.856145 ACTTGGCAAACATTGAAAACATTTA 57.144 28.000 0.00 0.00 0.00 1.40
5471 5742 7.974675 ACTTCCATGAATGTATTTTACGACAG 58.025 34.615 0.00 0.00 0.00 3.51
5476 5747 9.341899 GTCACAACTTCCATGAATGTATTTTAC 57.658 33.333 0.00 0.00 0.00 2.01
5479 5750 7.523293 TGTCACAACTTCCATGAATGTATTT 57.477 32.000 0.00 0.00 0.00 1.40
5581 5856 6.675026 TCTTGCAAAGTTTCATCATGAAGAG 58.325 36.000 0.00 0.00 46.34 2.85
5703 5982 3.118261 TGTGAAAGTGTCCTTCTCAGCTT 60.118 43.478 0.00 0.00 0.00 3.74
5845 6124 6.710744 GTCCAAACTAATGAAGAAAGGTGAGA 59.289 38.462 0.00 0.00 0.00 3.27
5882 6161 6.700081 CCATATTGAATTCATTCACAAGCCAG 59.300 38.462 9.40 0.00 45.63 4.85
5916 6195 6.187727 ACTATGTTGAGAGGGTTCTTTTGA 57.812 37.500 0.00 0.00 32.53 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.