Multiple sequence alignment - TraesCS6A01G209000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G209000 chr6A 100.000 5012 0 0 1 5012 377867056 377862045 0.000000e+00 9256.0
1 TraesCS6A01G209000 chr6B 92.898 2830 141 27 2152 4955 413954259 413951464 0.000000e+00 4058.0
2 TraesCS6A01G209000 chr6B 89.417 1493 61 46 732 2190 413955684 413954255 0.000000e+00 1792.0
3 TraesCS6A01G209000 chr6B 87.701 374 26 11 378 740 413956821 413956457 7.760000e-113 418.0
4 TraesCS6A01G209000 chr6D 95.646 2251 64 17 2152 4387 266446223 266443992 0.000000e+00 3583.0
5 TraesCS6A01G209000 chr6D 88.310 1899 89 40 348 2190 266448040 266446219 0.000000e+00 2154.0
6 TraesCS6A01G209000 chr6D 84.170 259 17 8 4403 4660 266442364 266442129 3.900000e-56 230.0
7 TraesCS6A01G209000 chr6D 89.873 79 4 4 290 366 266462185 266462109 1.150000e-16 99.0
8 TraesCS6A01G209000 chr3B 88.740 524 44 9 2142 2663 229501021 229501531 1.180000e-175 627.0
9 TraesCS6A01G209000 chr4D 88.719 523 44 9 2142 2663 364581621 364582129 4.260000e-175 625.0
10 TraesCS6A01G209000 chr4D 89.137 313 26 8 1 307 478256528 478256218 2.830000e-102 383.0
11 TraesCS6A01G209000 chr5B 86.998 523 41 11 2142 2663 579152490 579152986 9.420000e-157 564.0
12 TraesCS6A01G209000 chrUn 92.542 295 19 3 1 293 173753254 173752961 2.160000e-113 420.0
13 TraesCS6A01G209000 chr3D 92.042 289 20 3 1 287 531749837 531749550 2.170000e-108 403.0
14 TraesCS6A01G209000 chr2D 91.781 292 20 4 1 289 584242139 584242429 2.170000e-108 403.0
15 TraesCS6A01G209000 chr2D 91.724 290 22 2 1 289 181485065 181484777 7.820000e-108 401.0
16 TraesCS6A01G209000 chr2D 91.724 290 19 4 2 287 374660591 374660879 1.010000e-106 398.0
17 TraesCS6A01G209000 chr2D 91.409 291 22 3 1 289 47675083 47675372 3.640000e-106 396.0
18 TraesCS6A01G209000 chr1D 92.857 280 17 3 1 278 383175900 383175622 2.170000e-108 403.0
19 TraesCS6A01G209000 chr1D 91.753 291 21 3 1 289 477308125 477307836 7.820000e-108 401.0
20 TraesCS6A01G209000 chr1D 97.436 39 0 1 4811 4849 279820091 279820128 1.160000e-06 65.8
21 TraesCS6A01G209000 chr7D 80.576 139 20 5 4658 4794 128743892 128743759 3.190000e-17 100.0
22 TraesCS6A01G209000 chr3A 84.946 93 7 5 4808 4893 157037586 157037494 2.490000e-13 87.9
23 TraesCS6A01G209000 chr2A 89.091 55 5 1 4808 4861 535733420 535733366 3.240000e-07 67.6
24 TraesCS6A01G209000 chr1B 90.196 51 5 0 4808 4858 137615505 137615555 3.240000e-07 67.6
25 TraesCS6A01G209000 chr1A 90.566 53 2 3 4798 4850 324570482 324570531 3.240000e-07 67.6
26 TraesCS6A01G209000 chr4B 93.023 43 1 2 4801 4842 63117500 63117459 1.510000e-05 62.1
27 TraesCS6A01G209000 chr4A 92.857 42 2 1 4801 4842 595280229 595280189 5.420000e-05 60.2
28 TraesCS6A01G209000 chr5A 97.059 34 0 1 4809 4842 321054518 321054486 7.010000e-04 56.5
29 TraesCS6A01G209000 chr2B 100.000 29 0 0 4678 4706 564812532 564812504 3.000000e-03 54.7
30 TraesCS6A01G209000 chr2B 94.444 36 1 1 4807 4842 770710905 770710871 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G209000 chr6A 377862045 377867056 5011 True 9256.000000 9256 100.000000 1 5012 1 chr6A.!!$R1 5011
1 TraesCS6A01G209000 chr6B 413951464 413956821 5357 True 2089.333333 4058 90.005333 378 4955 3 chr6B.!!$R1 4577
2 TraesCS6A01G209000 chr6D 266442129 266448040 5911 True 1989.000000 3583 89.375333 348 4660 3 chr6D.!!$R2 4312
3 TraesCS6A01G209000 chr3B 229501021 229501531 510 False 627.000000 627 88.740000 2142 2663 1 chr3B.!!$F1 521
4 TraesCS6A01G209000 chr4D 364581621 364582129 508 False 625.000000 625 88.719000 2142 2663 1 chr4D.!!$F1 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 162 0.179040 AAGCCTCGTTTTTCACCGGA 60.179 50.0 9.46 0.0 0.0 5.14 F
1007 1807 0.106167 GGTTCTTCCCATAAGCCCCC 60.106 60.0 0.00 0.0 0.0 5.40 F
1056 1856 0.180406 GCTATTCCTTTCCGCTCCCA 59.820 55.0 0.00 0.0 0.0 4.37 F
1084 1884 0.458260 GCAAACGTCCACAACCCTTT 59.542 50.0 0.00 0.0 0.0 3.11 F
1463 2305 0.548510 CCCCAGATCTGTCCCTTTCC 59.451 60.0 21.11 0.0 0.0 3.13 F
3074 3960 0.105039 AGCTTCTAAAGATCGCCGGG 59.895 55.0 2.18 0.0 0.0 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1961 2807 0.038618 TCGTCAGCGTGCACAAGTAT 60.039 50.000 18.64 0.00 39.49 2.12 R
2990 3876 0.539669 CACCCTTCACAAACCTCCCC 60.540 60.000 0.00 0.00 0.00 4.81 R
3032 3918 1.950216 TCAAGCGCGACTCTCTGATAT 59.050 47.619 12.10 0.00 0.00 1.63 R
3074 3960 0.456221 ACAGGTCATCGTCGGTGATC 59.544 55.000 12.08 11.48 0.00 2.92 R
3245 4131 1.022735 CCGCTCGGTATCTGTGTACT 58.977 55.000 0.00 0.00 0.00 2.73 R
4983 7523 0.108138 ATTTCGCGGGTCTCTGAAGG 60.108 55.000 6.13 0.00 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.368641 GGACATTCTATGTGCGTGCA 58.631 50.000 0.00 0.00 45.03 4.57
28 29 1.062587 GGACATTCTATGTGCGTGCAC 59.937 52.381 17.72 17.72 45.03 4.57
37 38 2.194733 GTGCGTGCACAAAGTTTCG 58.805 52.632 19.45 0.61 45.53 3.46
38 39 1.063327 TGCGTGCACAAAGTTTCGG 59.937 52.632 18.64 0.00 0.00 4.30
39 40 1.063488 GCGTGCACAAAGTTTCGGT 59.937 52.632 18.64 0.00 0.00 4.69
40 41 1.199852 GCGTGCACAAAGTTTCGGTG 61.200 55.000 18.64 2.48 35.68 4.94
41 42 0.375454 CGTGCACAAAGTTTCGGTGA 59.625 50.000 18.64 0.00 34.52 4.02
42 43 1.202087 CGTGCACAAAGTTTCGGTGAA 60.202 47.619 18.64 0.00 34.52 3.18
43 44 2.729467 CGTGCACAAAGTTTCGGTGAAA 60.729 45.455 18.64 0.00 34.52 2.69
44 45 3.246619 GTGCACAAAGTTTCGGTGAAAA 58.753 40.909 13.17 0.00 33.14 2.29
45 46 3.675698 GTGCACAAAGTTTCGGTGAAAAA 59.324 39.130 13.17 0.00 33.14 1.94
46 47 3.675698 TGCACAAAGTTTCGGTGAAAAAC 59.324 39.130 9.60 0.00 33.14 2.43
47 48 3.675698 GCACAAAGTTTCGGTGAAAAACA 59.324 39.130 9.60 0.00 38.73 2.83
48 49 4.150804 GCACAAAGTTTCGGTGAAAAACAA 59.849 37.500 9.60 0.00 38.73 2.83
49 50 5.163903 GCACAAAGTTTCGGTGAAAAACAAT 60.164 36.000 9.60 0.00 38.73 2.71
50 51 6.239945 CACAAAGTTTCGGTGAAAAACAATG 58.760 36.000 0.82 2.99 38.73 2.82
51 52 5.929415 ACAAAGTTTCGGTGAAAAACAATGT 59.071 32.000 2.05 3.50 38.73 2.71
52 53 6.425417 ACAAAGTTTCGGTGAAAAACAATGTT 59.575 30.769 0.00 0.00 38.73 2.71
53 54 7.041712 ACAAAGTTTCGGTGAAAAACAATGTTT 60.042 29.630 5.41 5.41 38.73 2.83
54 55 7.428282 AAGTTTCGGTGAAAAACAATGTTTT 57.572 28.000 17.39 17.39 38.73 2.43
55 56 7.428282 AGTTTCGGTGAAAAACAATGTTTTT 57.572 28.000 29.82 29.82 38.73 1.94
96 97 9.573133 AAAAATAAAGAAATGCCTCGTGAATAG 57.427 29.630 0.00 0.00 0.00 1.73
97 98 7.865706 AATAAAGAAATGCCTCGTGAATAGT 57.134 32.000 0.00 0.00 0.00 2.12
98 99 7.865706 ATAAAGAAATGCCTCGTGAATAGTT 57.134 32.000 0.00 0.00 0.00 2.24
99 100 8.958119 ATAAAGAAATGCCTCGTGAATAGTTA 57.042 30.769 0.00 0.00 0.00 2.24
100 101 7.865706 AAAGAAATGCCTCGTGAATAGTTAT 57.134 32.000 0.00 0.00 0.00 1.89
101 102 8.958119 AAAGAAATGCCTCGTGAATAGTTATA 57.042 30.769 0.00 0.00 0.00 0.98
102 103 8.958119 AAGAAATGCCTCGTGAATAGTTATAA 57.042 30.769 0.00 0.00 0.00 0.98
103 104 9.561069 AAGAAATGCCTCGTGAATAGTTATAAT 57.439 29.630 0.00 0.00 0.00 1.28
104 105 8.993121 AGAAATGCCTCGTGAATAGTTATAATG 58.007 33.333 0.00 0.00 0.00 1.90
105 106 8.902540 AAATGCCTCGTGAATAGTTATAATGA 57.097 30.769 0.00 0.00 0.00 2.57
106 107 8.902540 AATGCCTCGTGAATAGTTATAATGAA 57.097 30.769 0.00 0.00 0.00 2.57
107 108 7.946655 TGCCTCGTGAATAGTTATAATGAAG 57.053 36.000 0.00 0.00 0.00 3.02
108 109 6.929049 TGCCTCGTGAATAGTTATAATGAAGG 59.071 38.462 0.00 0.00 0.00 3.46
109 110 7.152645 GCCTCGTGAATAGTTATAATGAAGGA 58.847 38.462 0.00 0.00 0.00 3.36
110 111 7.819900 GCCTCGTGAATAGTTATAATGAAGGAT 59.180 37.037 0.00 0.00 0.00 3.24
111 112 9.360093 CCTCGTGAATAGTTATAATGAAGGATC 57.640 37.037 0.00 0.00 0.00 3.36
112 113 9.914131 CTCGTGAATAGTTATAATGAAGGATCA 57.086 33.333 0.00 0.00 40.57 2.92
113 114 9.914131 TCGTGAATAGTTATAATGAAGGATCAG 57.086 33.333 0.00 0.00 39.39 2.90
114 115 9.914131 CGTGAATAGTTATAATGAAGGATCAGA 57.086 33.333 0.00 0.00 39.39 3.27
146 147 2.880963 TTACACAAGCCACAAAAGCC 57.119 45.000 0.00 0.00 0.00 4.35
147 148 2.065899 TACACAAGCCACAAAAGCCT 57.934 45.000 0.00 0.00 0.00 4.58
148 149 0.746659 ACACAAGCCACAAAAGCCTC 59.253 50.000 0.00 0.00 0.00 4.70
149 150 0.318107 CACAAGCCACAAAAGCCTCG 60.318 55.000 0.00 0.00 0.00 4.63
150 151 0.751643 ACAAGCCACAAAAGCCTCGT 60.752 50.000 0.00 0.00 0.00 4.18
151 152 0.385390 CAAGCCACAAAAGCCTCGTT 59.615 50.000 0.00 0.00 0.00 3.85
152 153 1.111277 AAGCCACAAAAGCCTCGTTT 58.889 45.000 0.00 0.00 0.00 3.60
153 154 1.111277 AGCCACAAAAGCCTCGTTTT 58.889 45.000 0.00 0.00 0.00 2.43
154 155 1.480545 AGCCACAAAAGCCTCGTTTTT 59.519 42.857 0.00 0.00 0.00 1.94
155 156 1.858458 GCCACAAAAGCCTCGTTTTTC 59.142 47.619 0.00 0.00 0.00 2.29
156 157 2.737039 GCCACAAAAGCCTCGTTTTTCA 60.737 45.455 0.00 0.00 0.00 2.69
157 158 2.857748 CCACAAAAGCCTCGTTTTTCAC 59.142 45.455 0.00 0.00 0.00 3.18
158 159 2.857748 CACAAAAGCCTCGTTTTTCACC 59.142 45.455 0.00 0.00 0.00 4.02
159 160 2.116366 CAAAAGCCTCGTTTTTCACCG 58.884 47.619 0.00 0.00 0.00 4.94
160 161 0.666374 AAAGCCTCGTTTTTCACCGG 59.334 50.000 0.00 0.00 0.00 5.28
161 162 0.179040 AAGCCTCGTTTTTCACCGGA 60.179 50.000 9.46 0.00 0.00 5.14
162 163 0.179040 AGCCTCGTTTTTCACCGGAA 60.179 50.000 9.46 0.00 0.00 4.30
163 164 0.664224 GCCTCGTTTTTCACCGGAAA 59.336 50.000 9.46 0.00 41.13 3.13
164 165 1.598676 GCCTCGTTTTTCACCGGAAAC 60.599 52.381 9.46 7.51 42.48 2.78
165 166 1.944709 CCTCGTTTTTCACCGGAAACT 59.055 47.619 9.46 0.00 42.48 2.66
166 167 2.356695 CCTCGTTTTTCACCGGAAACTT 59.643 45.455 9.46 0.00 42.48 2.66
167 168 3.181494 CCTCGTTTTTCACCGGAAACTTT 60.181 43.478 9.46 0.00 42.48 2.66
168 169 3.760537 TCGTTTTTCACCGGAAACTTTG 58.239 40.909 9.46 0.00 42.48 2.77
169 170 3.190953 TCGTTTTTCACCGGAAACTTTGT 59.809 39.130 9.46 0.00 42.48 2.83
170 171 3.302170 CGTTTTTCACCGGAAACTTTGTG 59.698 43.478 9.46 0.00 42.48 3.33
171 172 2.570442 TTTCACCGGAAACTTTGTGC 57.430 45.000 9.46 0.00 38.07 4.57
172 173 1.464734 TTCACCGGAAACTTTGTGCA 58.535 45.000 9.46 0.00 0.00 4.57
173 174 0.736053 TCACCGGAAACTTTGTGCAC 59.264 50.000 9.46 10.75 0.00 4.57
174 175 0.591236 CACCGGAAACTTTGTGCACG 60.591 55.000 9.46 0.00 0.00 5.34
175 176 1.657181 CCGGAAACTTTGTGCACGC 60.657 57.895 13.13 0.00 0.00 5.34
176 177 1.063327 CGGAAACTTTGTGCACGCA 59.937 52.632 13.13 0.00 0.00 5.24
177 178 1.199852 CGGAAACTTTGTGCACGCAC 61.200 55.000 15.20 15.20 46.33 5.34
186 187 3.448076 GTGCACGCACGTAAAATGT 57.552 47.368 6.38 0.00 37.19 2.71
187 188 1.314581 GTGCACGCACGTAAAATGTC 58.685 50.000 6.38 0.00 37.19 3.06
188 189 1.070175 GTGCACGCACGTAAAATGTCT 60.070 47.619 6.38 0.00 37.19 3.41
189 190 1.070242 TGCACGCACGTAAAATGTCTG 60.070 47.619 0.00 0.00 0.00 3.51
190 191 1.724654 GCACGCACGTAAAATGTCTGG 60.725 52.381 0.00 0.00 0.00 3.86
191 192 1.795872 CACGCACGTAAAATGTCTGGA 59.204 47.619 0.00 0.00 0.00 3.86
192 193 2.415168 CACGCACGTAAAATGTCTGGAT 59.585 45.455 0.00 0.00 0.00 3.41
193 194 3.615056 CACGCACGTAAAATGTCTGGATA 59.385 43.478 0.00 0.00 0.00 2.59
194 195 4.270084 CACGCACGTAAAATGTCTGGATAT 59.730 41.667 0.00 0.00 0.00 1.63
195 196 5.460748 CACGCACGTAAAATGTCTGGATATA 59.539 40.000 0.00 0.00 0.00 0.86
196 197 5.461078 ACGCACGTAAAATGTCTGGATATAC 59.539 40.000 0.00 0.00 0.00 1.47
197 198 5.460748 CGCACGTAAAATGTCTGGATATACA 59.539 40.000 0.00 0.00 0.00 2.29
198 199 6.561533 CGCACGTAAAATGTCTGGATATACAC 60.562 42.308 0.00 0.00 0.00 2.90
199 200 6.561533 GCACGTAAAATGTCTGGATATACACG 60.562 42.308 0.00 0.00 0.00 4.49
200 201 6.474427 CACGTAAAATGTCTGGATATACACGT 59.526 38.462 0.00 0.00 0.00 4.49
201 202 6.474427 ACGTAAAATGTCTGGATATACACGTG 59.526 38.462 15.48 15.48 0.00 4.49
202 203 6.074516 CGTAAAATGTCTGGATATACACGTGG 60.075 42.308 21.57 1.66 0.00 4.94
203 204 4.336889 AATGTCTGGATATACACGTGGG 57.663 45.455 21.57 0.00 0.00 4.61
204 205 3.021177 TGTCTGGATATACACGTGGGA 57.979 47.619 21.57 7.77 0.00 4.37
205 206 3.572642 TGTCTGGATATACACGTGGGAT 58.427 45.455 21.57 14.88 0.00 3.85
206 207 3.964688 TGTCTGGATATACACGTGGGATT 59.035 43.478 21.57 0.32 0.00 3.01
207 208 4.407621 TGTCTGGATATACACGTGGGATTT 59.592 41.667 21.57 7.88 0.00 2.17
208 209 5.104693 TGTCTGGATATACACGTGGGATTTT 60.105 40.000 21.57 0.00 0.00 1.82
209 210 5.820947 GTCTGGATATACACGTGGGATTTTT 59.179 40.000 21.57 0.00 0.00 1.94
210 211 5.820423 TCTGGATATACACGTGGGATTTTTG 59.180 40.000 21.57 4.58 0.00 2.44
211 212 5.502079 TGGATATACACGTGGGATTTTTGT 58.498 37.500 21.57 0.00 0.00 2.83
212 213 5.946972 TGGATATACACGTGGGATTTTTGTT 59.053 36.000 21.57 0.00 0.00 2.83
213 214 6.094325 TGGATATACACGTGGGATTTTTGTTC 59.906 38.462 21.57 2.71 0.00 3.18
214 215 6.094325 GGATATACACGTGGGATTTTTGTTCA 59.906 38.462 21.57 0.00 0.00 3.18
215 216 3.708563 ACACGTGGGATTTTTGTTCAG 57.291 42.857 21.57 0.00 0.00 3.02
216 217 3.283751 ACACGTGGGATTTTTGTTCAGA 58.716 40.909 21.57 0.00 0.00 3.27
217 218 3.697045 ACACGTGGGATTTTTGTTCAGAA 59.303 39.130 21.57 0.00 0.00 3.02
218 219 4.340950 ACACGTGGGATTTTTGTTCAGAAT 59.659 37.500 21.57 0.00 0.00 2.40
219 220 5.163457 ACACGTGGGATTTTTGTTCAGAATT 60.163 36.000 21.57 0.00 0.00 2.17
220 221 5.752955 CACGTGGGATTTTTGTTCAGAATTT 59.247 36.000 7.95 0.00 0.00 1.82
221 222 6.257630 CACGTGGGATTTTTGTTCAGAATTTT 59.742 34.615 7.95 0.00 0.00 1.82
222 223 6.821160 ACGTGGGATTTTTGTTCAGAATTTTT 59.179 30.769 0.00 0.00 0.00 1.94
223 224 7.011016 ACGTGGGATTTTTGTTCAGAATTTTTC 59.989 33.333 0.00 0.00 0.00 2.29
224 225 7.010923 CGTGGGATTTTTGTTCAGAATTTTTCA 59.989 33.333 0.00 0.00 0.00 2.69
225 226 8.672815 GTGGGATTTTTGTTCAGAATTTTTCAA 58.327 29.630 0.00 0.00 0.00 2.69
226 227 8.672815 TGGGATTTTTGTTCAGAATTTTTCAAC 58.327 29.630 0.00 0.00 0.00 3.18
227 228 8.892723 GGGATTTTTGTTCAGAATTTTTCAACT 58.107 29.630 0.00 0.00 0.00 3.16
254 255 9.703892 TTTCAAAATGTGTATTTAGACAATGGG 57.296 29.630 0.00 0.00 35.50 4.00
255 256 8.415950 TCAAAATGTGTATTTAGACAATGGGT 57.584 30.769 0.00 0.00 35.50 4.51
256 257 8.303156 TCAAAATGTGTATTTAGACAATGGGTG 58.697 33.333 0.00 0.00 35.50 4.61
257 258 7.775053 AAATGTGTATTTAGACAATGGGTGT 57.225 32.000 0.00 0.00 37.71 4.16
258 259 8.871629 AAATGTGTATTTAGACAATGGGTGTA 57.128 30.769 0.00 0.00 36.22 2.90
259 260 9.474313 AAATGTGTATTTAGACAATGGGTGTAT 57.526 29.630 0.00 0.00 36.22 2.29
262 263 9.554395 TGTGTATTTAGACAATGGGTGTATATG 57.446 33.333 0.00 0.00 41.96 1.78
263 264 9.555727 GTGTATTTAGACAATGGGTGTATATGT 57.444 33.333 0.00 0.00 41.96 2.29
267 268 7.924358 TTAGACAATGGGTGTATATGTACCT 57.076 36.000 9.31 0.00 41.96 3.08
268 269 9.436866 TTTAGACAATGGGTGTATATGTACCTA 57.563 33.333 9.31 4.89 41.96 3.08
269 270 7.540474 AGACAATGGGTGTATATGTACCTAG 57.460 40.000 9.31 0.00 41.96 3.02
270 271 7.302948 AGACAATGGGTGTATATGTACCTAGA 58.697 38.462 9.31 0.00 41.96 2.43
271 272 7.787904 AGACAATGGGTGTATATGTACCTAGAA 59.212 37.037 9.31 0.00 41.96 2.10
272 273 7.963532 ACAATGGGTGTATATGTACCTAGAAG 58.036 38.462 9.31 2.53 39.29 2.85
273 274 6.607004 ATGGGTGTATATGTACCTAGAAGC 57.393 41.667 9.31 0.00 37.15 3.86
274 275 4.836736 TGGGTGTATATGTACCTAGAAGCC 59.163 45.833 9.31 0.00 37.15 4.35
275 276 4.836736 GGGTGTATATGTACCTAGAAGCCA 59.163 45.833 9.31 0.00 37.15 4.75
276 277 5.484290 GGGTGTATATGTACCTAGAAGCCAT 59.516 44.000 9.31 0.00 37.15 4.40
277 278 6.666546 GGGTGTATATGTACCTAGAAGCCATA 59.333 42.308 9.31 0.00 37.15 2.74
278 279 7.147880 GGGTGTATATGTACCTAGAAGCCATAG 60.148 44.444 9.31 0.00 37.15 2.23
279 280 7.259161 GTGTATATGTACCTAGAAGCCATAGC 58.741 42.308 0.00 0.00 40.32 2.97
280 281 5.941555 ATATGTACCTAGAAGCCATAGCC 57.058 43.478 0.00 0.00 41.25 3.93
281 282 3.040655 TGTACCTAGAAGCCATAGCCA 57.959 47.619 0.00 0.00 41.25 4.75
282 283 3.380393 TGTACCTAGAAGCCATAGCCAA 58.620 45.455 0.00 0.00 41.25 4.52
283 284 3.973973 TGTACCTAGAAGCCATAGCCAAT 59.026 43.478 0.00 0.00 41.25 3.16
284 285 4.412199 TGTACCTAGAAGCCATAGCCAATT 59.588 41.667 0.00 0.00 41.25 2.32
285 286 5.605069 TGTACCTAGAAGCCATAGCCAATTA 59.395 40.000 0.00 0.00 41.25 1.40
286 287 4.974399 ACCTAGAAGCCATAGCCAATTAC 58.026 43.478 0.00 0.00 41.25 1.89
287 288 4.202472 ACCTAGAAGCCATAGCCAATTACC 60.202 45.833 0.00 0.00 41.25 2.85
288 289 2.851195 AGAAGCCATAGCCAATTACCG 58.149 47.619 0.00 0.00 41.25 4.02
289 290 2.438021 AGAAGCCATAGCCAATTACCGA 59.562 45.455 0.00 0.00 41.25 4.69
290 291 3.118038 AGAAGCCATAGCCAATTACCGAA 60.118 43.478 0.00 0.00 41.25 4.30
291 292 3.290948 AGCCATAGCCAATTACCGAAA 57.709 42.857 0.00 0.00 41.25 3.46
292 293 3.832527 AGCCATAGCCAATTACCGAAAT 58.167 40.909 0.00 0.00 41.25 2.17
293 294 4.215109 AGCCATAGCCAATTACCGAAATT 58.785 39.130 0.00 0.00 41.25 1.82
294 295 5.381757 AGCCATAGCCAATTACCGAAATTA 58.618 37.500 0.00 0.00 41.25 1.40
295 296 5.240844 AGCCATAGCCAATTACCGAAATTAC 59.759 40.000 0.00 0.00 41.25 1.89
296 297 5.009210 GCCATAGCCAATTACCGAAATTACA 59.991 40.000 0.00 0.00 35.54 2.41
297 298 6.460399 GCCATAGCCAATTACCGAAATTACAA 60.460 38.462 0.00 0.00 35.54 2.41
298 299 7.138736 CCATAGCCAATTACCGAAATTACAAG 58.861 38.462 0.00 0.00 35.54 3.16
299 300 7.201785 CCATAGCCAATTACCGAAATTACAAGT 60.202 37.037 0.00 0.00 35.54 3.16
300 301 5.949735 AGCCAATTACCGAAATTACAAGTG 58.050 37.500 0.00 0.00 35.54 3.16
301 302 5.475564 AGCCAATTACCGAAATTACAAGTGT 59.524 36.000 0.00 0.00 35.54 3.55
302 303 6.015772 AGCCAATTACCGAAATTACAAGTGTT 60.016 34.615 0.00 0.00 35.54 3.32
303 304 7.175293 AGCCAATTACCGAAATTACAAGTGTTA 59.825 33.333 0.00 0.00 35.54 2.41
304 305 7.971722 GCCAATTACCGAAATTACAAGTGTTAT 59.028 33.333 0.00 0.00 35.54 1.89
317 318 9.609346 ATTACAAGTGTTATATAGTTGTCCACC 57.391 33.333 11.75 0.00 40.88 4.61
318 319 6.103997 ACAAGTGTTATATAGTTGTCCACCG 58.896 40.000 5.38 0.00 37.15 4.94
319 320 4.690122 AGTGTTATATAGTTGTCCACCGC 58.310 43.478 0.00 0.00 0.00 5.68
320 321 4.160814 AGTGTTATATAGTTGTCCACCGCA 59.839 41.667 0.00 0.00 0.00 5.69
321 322 4.871557 GTGTTATATAGTTGTCCACCGCAA 59.128 41.667 0.00 0.00 0.00 4.85
322 323 5.352016 GTGTTATATAGTTGTCCACCGCAAA 59.648 40.000 0.00 0.00 0.00 3.68
323 324 5.938710 TGTTATATAGTTGTCCACCGCAAAA 59.061 36.000 0.00 0.00 0.00 2.44
324 325 6.430308 TGTTATATAGTTGTCCACCGCAAAAA 59.570 34.615 0.00 0.00 0.00 1.94
354 355 8.299262 TGATAAGCTTATAGAATTGACGCTTC 57.701 34.615 18.87 3.28 37.42 3.86
359 360 5.696260 TTATAGAATTGACGCTTCGTGTG 57.304 39.130 0.00 0.00 41.37 3.82
363 364 0.506932 ATTGACGCTTCGTGTGAACG 59.493 50.000 0.00 0.00 41.37 3.95
368 369 1.129064 ACGCTTCGTGTGAACGTTTTT 59.871 42.857 0.46 0.00 39.18 1.94
485 487 0.318762 ACTCCCTTGAGAGTGAACGC 59.681 55.000 0.00 0.00 45.41 4.84
489 491 1.664649 CTTGAGAGTGAACGCCGCA 60.665 57.895 0.00 0.00 0.00 5.69
501 503 1.530323 ACGCCGCAAACTTCCTATTT 58.470 45.000 0.00 0.00 0.00 1.40
557 559 5.320549 ACAAGATCATGTCAAATTCTGCC 57.679 39.130 0.00 0.00 0.00 4.85
570 572 6.765989 GTCAAATTCTGCCTTTTAGGGTTTTT 59.234 34.615 0.00 0.00 35.37 1.94
628 631 5.990996 ACCATGGCAAATTCTGTTTTTAGTG 59.009 36.000 13.04 0.00 0.00 2.74
641 644 7.254852 TCTGTTTTTAGTGACATGGTGTTTTC 58.745 34.615 0.00 0.00 0.00 2.29
655 658 4.643784 TGGTGTTTTCGTAAAGCCCTTTAA 59.356 37.500 2.29 0.00 36.86 1.52
675 678 4.701651 AATTACCCCCTCGGAATAGAAC 57.298 45.455 0.00 0.00 34.64 3.01
764 1559 7.164803 TGCAAGGAAAGGAAAGAAAAAGAAAA 58.835 30.769 0.00 0.00 0.00 2.29
765 1560 7.334171 TGCAAGGAAAGGAAAGAAAAAGAAAAG 59.666 33.333 0.00 0.00 0.00 2.27
766 1561 7.549134 GCAAGGAAAGGAAAGAAAAAGAAAAGA 59.451 33.333 0.00 0.00 0.00 2.52
767 1562 9.091784 CAAGGAAAGGAAAGAAAAAGAAAAGAG 57.908 33.333 0.00 0.00 0.00 2.85
768 1563 8.595362 AGGAAAGGAAAGAAAAAGAAAAGAGA 57.405 30.769 0.00 0.00 0.00 3.10
811 1606 3.319405 AGAGAAAGACACGACACTGACAT 59.681 43.478 0.00 0.00 0.00 3.06
819 1614 5.989168 AGACACGACACTGACATAAATTTCA 59.011 36.000 0.00 0.00 0.00 2.69
837 1632 3.120321 TCAGGCTTTAAACTCTGCGAA 57.880 42.857 7.72 0.00 0.00 4.70
854 1653 1.879796 CGAAATGAGATGCCCCTAGCC 60.880 57.143 0.00 0.00 42.71 3.93
862 1661 1.204113 ATGCCCCTAGCCTCCATAGC 61.204 60.000 0.00 0.00 42.71 2.97
870 1669 1.070445 GCCTCCATAGCAGCACGAT 59.930 57.895 0.00 0.00 0.00 3.73
897 1696 3.238597 ACAAAGACCAGCTCTCTCTCTT 58.761 45.455 0.00 0.00 0.00 2.85
898 1697 3.258123 ACAAAGACCAGCTCTCTCTCTTC 59.742 47.826 0.00 0.00 0.00 2.87
993 1793 3.436577 TTAGAGGAGAGACACGGTTCT 57.563 47.619 0.00 0.00 0.00 3.01
994 1794 2.296073 AGAGGAGAGACACGGTTCTT 57.704 50.000 0.00 0.00 0.00 2.52
995 1795 2.164338 AGAGGAGAGACACGGTTCTTC 58.836 52.381 0.00 0.00 0.00 2.87
1002 1802 3.195825 AGAGACACGGTTCTTCCCATAAG 59.804 47.826 0.00 0.00 0.00 1.73
1007 1807 0.106167 GGTTCTTCCCATAAGCCCCC 60.106 60.000 0.00 0.00 0.00 5.40
1056 1856 0.180406 GCTATTCCTTTCCGCTCCCA 59.820 55.000 0.00 0.00 0.00 4.37
1083 1883 1.720694 CGCAAACGTCCACAACCCTT 61.721 55.000 0.00 0.00 33.53 3.95
1084 1884 0.458260 GCAAACGTCCACAACCCTTT 59.542 50.000 0.00 0.00 0.00 3.11
1093 1902 3.892588 GTCCACAACCCTTTGTATTTCCA 59.107 43.478 0.00 0.00 44.57 3.53
1115 1924 1.152183 AACACCCTCCCCTGTACGT 60.152 57.895 0.00 0.00 0.00 3.57
1116 1925 1.477685 AACACCCTCCCCTGTACGTG 61.478 60.000 0.00 0.00 0.00 4.49
1117 1926 1.608336 CACCCTCCCCTGTACGTGA 60.608 63.158 0.00 0.00 0.00 4.35
1118 1927 1.608627 ACCCTCCCCTGTACGTGAC 60.609 63.158 0.00 0.00 0.00 3.67
1119 1928 2.356780 CCCTCCCCTGTACGTGACC 61.357 68.421 0.00 0.00 0.00 4.02
1143 1952 1.154016 CGACAGCGGAGACACGAAT 60.154 57.895 0.00 0.00 35.47 3.34
1346 2187 4.521062 GCTGCCGCGATGGAGTCT 62.521 66.667 8.23 0.00 42.00 3.24
1463 2305 0.548510 CCCCAGATCTGTCCCTTTCC 59.451 60.000 21.11 0.00 0.00 3.13
1514 2356 2.286523 CCTGGTCCACGAGAAGGCT 61.287 63.158 0.00 0.00 0.00 4.58
1530 2372 3.080121 CTCCTTCTCGCCCCTGCT 61.080 66.667 0.00 0.00 34.43 4.24
1547 2392 6.295632 GCCCCTGCTTTTTCCTTCTTTTTATA 60.296 38.462 0.00 0.00 33.53 0.98
1550 2395 9.725019 CCCTGCTTTTTCCTTCTTTTTATATTT 57.275 29.630 0.00 0.00 0.00 1.40
1658 2503 1.280710 TCCACCACCAATATCACGCTT 59.719 47.619 0.00 0.00 0.00 4.68
1659 2504 1.401552 CCACCACCAATATCACGCTTG 59.598 52.381 0.00 0.00 0.00 4.01
1664 2509 1.665679 ACCAATATCACGCTTGCTTCG 59.334 47.619 0.00 0.00 0.00 3.79
1750 2595 2.899339 GGCTCCGAGATGCTTGCC 60.899 66.667 0.00 0.00 0.00 4.52
1917 2762 5.959618 ATCTTTTCTTTAACCGGTTGAGG 57.040 39.130 30.08 21.86 37.30 3.86
1978 2824 3.424433 GGTTAATACTTGTGCACGCTGAC 60.424 47.826 13.13 2.76 0.00 3.51
2004 2850 2.363788 TGCTGCCAAAGTAGACTACG 57.636 50.000 6.98 0.00 0.00 3.51
2031 2877 6.958255 GGAGTTCGTTAAGAGATACTCCTAC 58.042 44.000 20.22 0.00 45.15 3.18
2032 2878 6.292811 GGAGTTCGTTAAGAGATACTCCTACG 60.293 46.154 20.22 0.00 45.15 3.51
2033 2879 6.112058 AGTTCGTTAAGAGATACTCCTACGT 58.888 40.000 0.00 0.00 33.78 3.57
2034 2880 7.268586 AGTTCGTTAAGAGATACTCCTACGTA 58.731 38.462 0.00 0.00 33.78 3.57
2035 2881 7.223777 AGTTCGTTAAGAGATACTCCTACGTAC 59.776 40.741 0.00 0.00 33.89 3.67
2036 2882 6.810911 TCGTTAAGAGATACTCCTACGTACT 58.189 40.000 0.00 0.00 33.78 2.73
2037 2883 6.920758 TCGTTAAGAGATACTCCTACGTACTC 59.079 42.308 0.00 0.00 33.78 2.59
2038 2884 6.145371 CGTTAAGAGATACTCCTACGTACTCC 59.855 46.154 0.00 0.00 30.34 3.85
2039 2885 5.627182 AAGAGATACTCCTACGTACTCCA 57.373 43.478 0.00 0.00 0.00 3.86
2040 2886 4.959723 AGAGATACTCCTACGTACTCCAC 58.040 47.826 0.00 0.00 0.00 4.02
2080 2926 2.791560 CGTCGATCTGAATTAGGCTGTG 59.208 50.000 0.00 0.00 0.00 3.66
2084 2930 4.887655 TCGATCTGAATTAGGCTGTGTCTA 59.112 41.667 0.00 0.00 0.00 2.59
2085 2931 5.536538 TCGATCTGAATTAGGCTGTGTCTAT 59.463 40.000 0.00 0.00 0.00 1.98
2210 3093 3.319689 CCCGTGTTGAGTGGGTTTTAAAT 59.680 43.478 0.00 0.00 38.18 1.40
2211 3094 4.202172 CCCGTGTTGAGTGGGTTTTAAATT 60.202 41.667 0.00 0.00 38.18 1.82
2350 3233 2.351706 TTGGCGTCCTAAGTTGGTTT 57.648 45.000 0.00 0.00 0.00 3.27
2394 3279 4.261197 CCCTGCAGTTTGTACAGTCTTTTC 60.261 45.833 13.81 0.00 0.00 2.29
2495 3380 4.154942 ACTTCCATTGCCTGAGTGATTTT 58.845 39.130 0.00 0.00 0.00 1.82
2705 3591 2.757077 CCCCCGAAGCCTTTCACT 59.243 61.111 0.00 0.00 32.67 3.41
2777 3663 1.271127 TGCATGGATGGAAGGTCCGA 61.271 55.000 0.00 0.00 40.17 4.55
2990 3876 4.081642 CGGTTGACCTATGGTATGATAGGG 60.082 50.000 10.59 0.00 46.66 3.53
3008 3894 1.726192 GGGGGAGGTTTGTGAAGGGT 61.726 60.000 0.00 0.00 0.00 4.34
3032 3918 3.075882 AGAACCCATTTGTGGAGGAATCA 59.924 43.478 0.00 0.00 0.00 2.57
3074 3960 0.105039 AGCTTCTAAAGATCGCCGGG 59.895 55.000 2.18 0.00 0.00 5.73
3104 3990 5.344743 ACGATGACCTGTTGATTATGTCT 57.655 39.130 0.00 0.00 0.00 3.41
3128 4014 2.644299 TGTTGATGAGATCCCAAGTGGT 59.356 45.455 0.00 0.00 34.77 4.16
3245 4131 3.181329 TGATAAGAGTTGGAGGGCTTCA 58.819 45.455 0.00 0.00 0.00 3.02
3320 4206 0.178921 ACCTTCTGGCAGACTCAGGA 60.179 55.000 31.00 11.62 36.63 3.86
3414 4300 3.553922 CCGGATCAGATTCAGCTACTTCC 60.554 52.174 0.00 0.00 0.00 3.46
3536 4422 4.383335 GGTCCAATCCCAAGTACGTATTCA 60.383 45.833 0.00 0.00 0.00 2.57
3628 4514 1.135333 GAGAGAAAGTGGGTAGCCTCG 59.865 57.143 13.11 0.00 0.00 4.63
3631 4517 2.871216 GAAAGTGGGTAGCCTCGGCC 62.871 65.000 13.11 0.00 43.17 6.13
3636 4522 2.510918 GGTAGCCTCGGCCGTTTC 60.511 66.667 27.15 14.72 43.17 2.78
3771 4658 8.811017 TGTACCATGTAATTCAAAACAATGGAT 58.189 29.630 5.82 0.00 32.88 3.41
4050 4955 2.048603 GTTCATGTCCTGCCTGCCC 61.049 63.158 0.00 0.00 0.00 5.36
4051 4956 3.626996 TTCATGTCCTGCCTGCCCG 62.627 63.158 0.00 0.00 0.00 6.13
4099 5004 6.238648 CCGTTTTTCTGGTCAAGTGTCTTAAT 60.239 38.462 0.00 0.00 0.00 1.40
4100 5005 6.851330 CGTTTTTCTGGTCAAGTGTCTTAATC 59.149 38.462 0.00 0.00 0.00 1.75
4101 5006 6.877611 TTTTCTGGTCAAGTGTCTTAATCC 57.122 37.500 0.00 0.00 0.00 3.01
4139 5044 1.060713 CCGTTGCTGTCGTACTGAAG 58.939 55.000 0.00 0.00 0.00 3.02
4144 5049 1.000607 TGCTGTCGTACTGAAGACACC 60.001 52.381 0.00 0.00 41.81 4.16
4254 5160 7.339212 TGATTTGGGTAATCCATACTCTGTTTG 59.661 37.037 0.00 0.00 46.52 2.93
4295 5201 1.194772 GTTGTTAAGCGACCTGTGAGC 59.805 52.381 0.00 0.00 0.00 4.26
4353 5259 2.997315 TGTCCACCTCGGCCAGAG 60.997 66.667 15.17 15.17 46.44 3.35
4463 6981 4.396166 CCTCGGCTAGTTGATTTGTTCAAT 59.604 41.667 0.00 0.00 45.77 2.57
4464 6982 5.295431 TCGGCTAGTTGATTTGTTCAATG 57.705 39.130 0.00 0.00 45.77 2.82
4465 6983 5.000591 TCGGCTAGTTGATTTGTTCAATGA 58.999 37.500 0.00 0.00 45.77 2.57
4486 7004 3.691049 TTTTCAGAGAAACGTTGCCAG 57.309 42.857 0.00 0.00 0.00 4.85
4491 7009 3.570975 TCAGAGAAACGTTGCCAGTAGTA 59.429 43.478 0.00 0.00 0.00 1.82
4517 7035 2.163818 TAACTTGCAGTCTTCGGTGG 57.836 50.000 0.00 0.00 0.00 4.61
4521 7039 2.111999 TTGCAGTCTTCGGTGGAGGG 62.112 60.000 0.00 0.00 0.00 4.30
4661 7180 2.035449 TCACGAAGGCATACGGATAAGG 59.965 50.000 0.00 0.00 0.00 2.69
4670 7198 3.804036 CATACGGATAAGGCCAACTTCA 58.196 45.455 5.01 0.00 40.64 3.02
4675 7203 2.617021 GGATAAGGCCAACTTCAACGGA 60.617 50.000 5.01 0.00 40.64 4.69
4679 7207 1.235281 GGCCAACTTCAACGGAGACC 61.235 60.000 0.00 0.00 0.00 3.85
4692 7220 2.921634 GGAGACCCGCAATTTTTCTC 57.078 50.000 0.00 0.00 33.33 2.87
4715 7243 1.005394 ATCCGTCCGCGAACAAAGT 60.005 52.632 8.23 0.00 41.33 2.66
4716 7244 1.289109 ATCCGTCCGCGAACAAAGTG 61.289 55.000 8.23 0.00 41.33 3.16
4718 7246 1.200839 CGTCCGCGAACAAAGTGAC 59.799 57.895 8.23 2.27 41.33 3.67
4719 7247 1.568025 GTCCGCGAACAAAGTGACC 59.432 57.895 8.23 0.00 0.00 4.02
4721 7249 0.878523 TCCGCGAACAAAGTGACCAG 60.879 55.000 8.23 0.00 0.00 4.00
4723 7251 0.232303 CGCGAACAAAGTGACCAGTC 59.768 55.000 0.00 0.00 0.00 3.51
4724 7252 0.586802 GCGAACAAAGTGACCAGTCC 59.413 55.000 0.00 0.00 0.00 3.85
4725 7253 1.948104 CGAACAAAGTGACCAGTCCA 58.052 50.000 0.00 0.00 0.00 4.02
4727 7255 1.597663 GAACAAAGTGACCAGTCCACG 59.402 52.381 0.00 0.00 39.38 4.94
4728 7256 0.814010 ACAAAGTGACCAGTCCACGC 60.814 55.000 0.00 0.00 39.38 5.34
4729 7257 1.594293 AAAGTGACCAGTCCACGCG 60.594 57.895 3.53 3.53 39.38 6.01
4730 7258 4.664677 AGTGACCAGTCCACGCGC 62.665 66.667 5.73 0.00 39.38 6.86
4731 7259 4.961511 GTGACCAGTCCACGCGCA 62.962 66.667 5.73 0.00 0.00 6.09
4732 7260 4.002506 TGACCAGTCCACGCGCAT 62.003 61.111 5.73 0.00 0.00 4.73
4738 7269 0.528466 CAGTCCACGCGCATAGATGT 60.528 55.000 5.73 0.00 0.00 3.06
4747 7278 1.302033 GCATAGATGTGGGAGGCCG 60.302 63.158 0.00 0.00 0.00 6.13
4751 7282 1.113517 TAGATGTGGGAGGCCGCTAC 61.114 60.000 6.40 6.95 0.00 3.58
4753 7284 4.715130 TGTGGGAGGCCGCTACCT 62.715 66.667 6.40 0.00 45.04 3.08
4762 7293 1.877165 GCCGCTACCTAACGCTGAC 60.877 63.158 0.00 0.00 0.00 3.51
4764 7295 1.585521 CGCTACCTAACGCTGACCG 60.586 63.158 0.00 0.00 44.21 4.79
4770 7301 0.179121 CCTAACGCTGACCGCATACA 60.179 55.000 0.00 0.00 41.76 2.29
4772 7303 2.201732 CTAACGCTGACCGCATACATT 58.798 47.619 0.00 0.00 41.76 2.71
4774 7305 0.810031 ACGCTGACCGCATACATTCC 60.810 55.000 0.00 0.00 41.76 3.01
4795 7326 7.789273 TTCCGACAACAATTCAAACTAACTA 57.211 32.000 0.00 0.00 0.00 2.24
4807 7338 8.950403 ATTCAAACTAACTAGACAAAATTCGC 57.050 30.769 0.00 0.00 0.00 4.70
4827 7358 5.301555 TCGCCGGATTTCATATAAACATGA 58.698 37.500 5.05 0.00 33.10 3.07
4831 7362 5.106712 CCGGATTTCATATAAACATGACGGG 60.107 44.000 0.00 0.00 37.28 5.28
4852 7383 8.795842 ACGGGTTTCATTACATTTACATCTAA 57.204 30.769 0.00 0.00 0.00 2.10
4853 7384 8.671028 ACGGGTTTCATTACATTTACATCTAAC 58.329 33.333 0.00 0.00 0.00 2.34
4861 7395 4.189231 ACATTTACATCTAACCGGTGCTC 58.811 43.478 8.52 0.00 0.00 4.26
4862 7396 4.081087 ACATTTACATCTAACCGGTGCTCT 60.081 41.667 8.52 0.00 0.00 4.09
4884 7424 4.660789 TCCGGCTCTAAAGGTAATACAC 57.339 45.455 0.00 0.00 0.00 2.90
4900 7440 8.494016 GGTAATACACCTAATCTATGATTGCC 57.506 38.462 3.35 0.00 44.79 4.52
4903 7443 2.744202 CACCTAATCTATGATTGCCGGC 59.256 50.000 22.73 22.73 0.00 6.13
4905 7445 1.394917 CTAATCTATGATTGCCGGCGC 59.605 52.381 23.90 14.47 0.00 6.53
4908 7448 2.661537 TATGATTGCCGGCGCTCG 60.662 61.111 23.90 9.53 35.36 5.03
4915 7455 4.807039 GCCGGCGCTCGTTTCCTA 62.807 66.667 12.58 0.00 37.11 2.94
4919 7459 1.082117 CGGCGCTCGTTTCCTATGTT 61.082 55.000 7.64 0.00 0.00 2.71
4924 7464 1.739371 GCTCGTTTCCTATGTTCGGCT 60.739 52.381 0.00 0.00 0.00 5.52
4945 7485 4.094146 GCTATGAGCCTTGAGAACTGAAAC 59.906 45.833 0.00 0.00 34.48 2.78
4949 7489 4.141620 TGAGCCTTGAGAACTGAAACTTCT 60.142 41.667 0.00 0.00 0.00 2.85
4955 7495 6.540189 CCTTGAGAACTGAAACTTCTTCTTCA 59.460 38.462 0.00 0.00 0.00 3.02
4965 7505 7.652085 GAAACTTCTTCTTCAGTTTCGTTTC 57.348 36.000 8.58 0.00 45.41 2.78
4966 7506 6.737254 AACTTCTTCTTCAGTTTCGTTTCA 57.263 33.333 0.00 0.00 28.27 2.69
4967 7507 6.351327 ACTTCTTCTTCAGTTTCGTTTCAG 57.649 37.500 0.00 0.00 0.00 3.02
4968 7508 4.795970 TCTTCTTCAGTTTCGTTTCAGC 57.204 40.909 0.00 0.00 0.00 4.26
4969 7509 3.560068 TCTTCTTCAGTTTCGTTTCAGCC 59.440 43.478 0.00 0.00 0.00 4.85
4970 7510 3.194005 TCTTCAGTTTCGTTTCAGCCT 57.806 42.857 0.00 0.00 0.00 4.58
4971 7511 3.131396 TCTTCAGTTTCGTTTCAGCCTC 58.869 45.455 0.00 0.00 0.00 4.70
4972 7512 1.878953 TCAGTTTCGTTTCAGCCTCC 58.121 50.000 0.00 0.00 0.00 4.30
4973 7513 0.512952 CAGTTTCGTTTCAGCCTCCG 59.487 55.000 0.00 0.00 0.00 4.63
4974 7514 1.206831 GTTTCGTTTCAGCCTCCGC 59.793 57.895 0.00 0.00 0.00 5.54
4975 7515 1.227704 TTTCGTTTCAGCCTCCGCA 60.228 52.632 0.00 0.00 37.52 5.69
4976 7516 0.816018 TTTCGTTTCAGCCTCCGCAA 60.816 50.000 0.00 0.00 37.52 4.85
4977 7517 1.503818 TTCGTTTCAGCCTCCGCAAC 61.504 55.000 0.00 0.00 37.52 4.17
4978 7518 2.954611 GTTTCAGCCTCCGCAACC 59.045 61.111 0.00 0.00 37.52 3.77
4979 7519 1.896660 GTTTCAGCCTCCGCAACCA 60.897 57.895 0.00 0.00 37.52 3.67
4980 7520 1.896660 TTTCAGCCTCCGCAACCAC 60.897 57.895 0.00 0.00 37.52 4.16
4981 7521 3.842925 TTCAGCCTCCGCAACCACC 62.843 63.158 0.00 0.00 37.52 4.61
4989 7529 3.726517 CGCAACCACCGCCTTCAG 61.727 66.667 0.00 0.00 0.00 3.02
4990 7530 2.281484 GCAACCACCGCCTTCAGA 60.281 61.111 0.00 0.00 0.00 3.27
4991 7531 2.328099 GCAACCACCGCCTTCAGAG 61.328 63.158 0.00 0.00 0.00 3.35
4992 7532 1.371183 CAACCACCGCCTTCAGAGA 59.629 57.895 0.00 0.00 0.00 3.10
4993 7533 0.951040 CAACCACCGCCTTCAGAGAC 60.951 60.000 0.00 0.00 0.00 3.36
4994 7534 2.113243 AACCACCGCCTTCAGAGACC 62.113 60.000 0.00 0.00 0.00 3.85
4995 7535 2.266055 CACCGCCTTCAGAGACCC 59.734 66.667 0.00 0.00 0.00 4.46
4996 7536 3.382832 ACCGCCTTCAGAGACCCG 61.383 66.667 0.00 0.00 0.00 5.28
4997 7537 4.821589 CCGCCTTCAGAGACCCGC 62.822 72.222 0.00 0.00 0.00 6.13
4999 7539 3.760035 GCCTTCAGAGACCCGCGA 61.760 66.667 8.23 0.00 0.00 5.87
5000 7540 2.970639 CCTTCAGAGACCCGCGAA 59.029 61.111 8.23 0.00 0.00 4.70
5001 7541 1.292223 CCTTCAGAGACCCGCGAAA 59.708 57.895 8.23 0.00 0.00 3.46
5002 7542 0.108138 CCTTCAGAGACCCGCGAAAT 60.108 55.000 8.23 0.00 0.00 2.17
5003 7543 1.002366 CTTCAGAGACCCGCGAAATG 58.998 55.000 8.23 0.00 0.00 2.32
5004 7544 0.606096 TTCAGAGACCCGCGAAATGA 59.394 50.000 8.23 0.00 0.00 2.57
5005 7545 0.606096 TCAGAGACCCGCGAAATGAA 59.394 50.000 8.23 0.00 0.00 2.57
5006 7546 1.002366 CAGAGACCCGCGAAATGAAG 58.998 55.000 8.23 0.00 0.00 3.02
5007 7547 0.608640 AGAGACCCGCGAAATGAAGT 59.391 50.000 8.23 0.00 0.00 3.01
5008 7548 1.002087 AGAGACCCGCGAAATGAAGTT 59.998 47.619 8.23 0.00 0.00 2.66
5009 7549 1.128692 GAGACCCGCGAAATGAAGTTG 59.871 52.381 8.23 0.00 0.00 3.16
5010 7550 0.872388 GACCCGCGAAATGAAGTTGT 59.128 50.000 8.23 0.00 0.00 3.32
5011 7551 1.265905 GACCCGCGAAATGAAGTTGTT 59.734 47.619 8.23 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.798907 CGCACATAGAATGTCCGGATATAC 59.201 45.833 14.71 0.00 40.59 1.47
1 2 4.993905 CGCACATAGAATGTCCGGATATA 58.006 43.478 14.71 0.00 40.59 0.86
2 3 3.849911 CGCACATAGAATGTCCGGATAT 58.150 45.455 7.81 7.95 40.59 1.63
4 5 2.154854 CGCACATAGAATGTCCGGAT 57.845 50.000 7.81 0.00 40.59 4.18
8 9 1.062587 GTGCACGCACATAGAATGTCC 59.937 52.381 17.03 0.00 45.53 4.02
9 10 2.442189 GTGCACGCACATAGAATGTC 57.558 50.000 17.03 0.00 45.53 3.06
19 20 1.199852 CCGAAACTTTGTGCACGCAC 61.200 55.000 15.20 15.20 46.33 5.34
20 21 1.063327 CCGAAACTTTGTGCACGCA 59.937 52.632 13.13 0.00 0.00 5.24
21 22 1.063488 ACCGAAACTTTGTGCACGC 59.937 52.632 13.13 0.00 0.00 5.34
22 23 0.375454 TCACCGAAACTTTGTGCACG 59.625 50.000 13.13 0.00 0.00 5.34
23 24 2.553079 TTCACCGAAACTTTGTGCAC 57.447 45.000 10.75 10.75 0.00 4.57
24 25 3.577649 TTTTCACCGAAACTTTGTGCA 57.422 38.095 0.00 0.00 30.83 4.57
25 26 3.675698 TGTTTTTCACCGAAACTTTGTGC 59.324 39.130 0.00 0.00 37.75 4.57
26 27 5.830900 TTGTTTTTCACCGAAACTTTGTG 57.169 34.783 0.00 0.00 37.75 3.33
27 28 5.929415 ACATTGTTTTTCACCGAAACTTTGT 59.071 32.000 0.00 0.00 37.75 2.83
28 29 6.401955 ACATTGTTTTTCACCGAAACTTTG 57.598 33.333 0.00 0.00 37.75 2.77
29 30 7.428282 AAACATTGTTTTTCACCGAAACTTT 57.572 28.000 8.97 0.00 37.75 2.66
30 31 7.428282 AAAACATTGTTTTTCACCGAAACTT 57.572 28.000 19.31 0.00 37.75 2.66
31 32 7.428282 AAAAACATTGTTTTTCACCGAAACT 57.572 28.000 26.74 8.12 37.75 2.66
70 71 9.573133 CTATTCACGAGGCATTTCTTTATTTTT 57.427 29.630 0.00 0.00 0.00 1.94
71 72 8.739972 ACTATTCACGAGGCATTTCTTTATTTT 58.260 29.630 0.00 0.00 0.00 1.82
72 73 8.281212 ACTATTCACGAGGCATTTCTTTATTT 57.719 30.769 0.00 0.00 0.00 1.40
73 74 7.865706 ACTATTCACGAGGCATTTCTTTATT 57.134 32.000 0.00 0.00 0.00 1.40
74 75 7.865706 AACTATTCACGAGGCATTTCTTTAT 57.134 32.000 0.00 0.00 0.00 1.40
75 76 8.958119 ATAACTATTCACGAGGCATTTCTTTA 57.042 30.769 0.00 0.00 0.00 1.85
76 77 7.865706 ATAACTATTCACGAGGCATTTCTTT 57.134 32.000 0.00 0.00 0.00 2.52
77 78 8.958119 TTATAACTATTCACGAGGCATTTCTT 57.042 30.769 0.00 0.00 0.00 2.52
78 79 8.993121 CATTATAACTATTCACGAGGCATTTCT 58.007 33.333 0.00 0.00 0.00 2.52
79 80 8.988934 TCATTATAACTATTCACGAGGCATTTC 58.011 33.333 0.00 0.00 0.00 2.17
80 81 8.902540 TCATTATAACTATTCACGAGGCATTT 57.097 30.769 0.00 0.00 0.00 2.32
81 82 8.902540 TTCATTATAACTATTCACGAGGCATT 57.097 30.769 0.00 0.00 0.00 3.56
82 83 7.604164 CCTTCATTATAACTATTCACGAGGCAT 59.396 37.037 0.00 0.00 0.00 4.40
83 84 6.929049 CCTTCATTATAACTATTCACGAGGCA 59.071 38.462 0.00 0.00 0.00 4.75
84 85 7.152645 TCCTTCATTATAACTATTCACGAGGC 58.847 38.462 0.00 0.00 0.00 4.70
85 86 9.360093 GATCCTTCATTATAACTATTCACGAGG 57.640 37.037 0.00 0.00 0.00 4.63
86 87 9.914131 TGATCCTTCATTATAACTATTCACGAG 57.086 33.333 0.00 0.00 0.00 4.18
87 88 9.914131 CTGATCCTTCATTATAACTATTCACGA 57.086 33.333 0.00 0.00 0.00 4.35
88 89 9.914131 TCTGATCCTTCATTATAACTATTCACG 57.086 33.333 0.00 0.00 0.00 4.35
124 125 3.935828 GGCTTTTGTGGCTTGTGTAAAAA 59.064 39.130 0.00 0.00 0.00 1.94
125 126 3.196685 AGGCTTTTGTGGCTTGTGTAAAA 59.803 39.130 0.00 0.00 40.00 1.52
126 127 2.763448 AGGCTTTTGTGGCTTGTGTAAA 59.237 40.909 0.00 0.00 40.00 2.01
127 128 2.360801 GAGGCTTTTGTGGCTTGTGTAA 59.639 45.455 0.00 0.00 43.09 2.41
128 129 1.953686 GAGGCTTTTGTGGCTTGTGTA 59.046 47.619 0.00 0.00 43.09 2.90
129 130 0.746659 GAGGCTTTTGTGGCTTGTGT 59.253 50.000 0.00 0.00 43.09 3.72
130 131 0.318107 CGAGGCTTTTGTGGCTTGTG 60.318 55.000 0.00 0.00 43.09 3.33
131 132 2.032981 CGAGGCTTTTGTGGCTTGT 58.967 52.632 0.00 0.00 43.09 3.16
132 133 0.385390 AACGAGGCTTTTGTGGCTTG 59.615 50.000 0.00 0.00 45.98 4.01
133 134 1.111277 AAACGAGGCTTTTGTGGCTT 58.889 45.000 0.00 0.00 43.09 4.35
134 135 1.111277 AAAACGAGGCTTTTGTGGCT 58.889 45.000 0.00 0.00 45.80 4.75
135 136 1.858458 GAAAAACGAGGCTTTTGTGGC 59.142 47.619 0.00 0.00 0.00 5.01
136 137 2.857748 GTGAAAAACGAGGCTTTTGTGG 59.142 45.455 0.00 0.00 0.00 4.17
137 138 2.857748 GGTGAAAAACGAGGCTTTTGTG 59.142 45.455 0.00 0.00 0.00 3.33
138 139 2.478879 CGGTGAAAAACGAGGCTTTTGT 60.479 45.455 0.00 0.00 0.00 2.83
139 140 2.116366 CGGTGAAAAACGAGGCTTTTG 58.884 47.619 0.00 0.00 0.00 2.44
140 141 1.066454 CCGGTGAAAAACGAGGCTTTT 59.934 47.619 0.00 0.00 0.00 2.27
141 142 0.666374 CCGGTGAAAAACGAGGCTTT 59.334 50.000 0.00 0.00 0.00 3.51
142 143 0.179040 TCCGGTGAAAAACGAGGCTT 60.179 50.000 0.00 0.00 0.00 4.35
143 144 0.179040 TTCCGGTGAAAAACGAGGCT 60.179 50.000 0.00 0.00 0.00 4.58
144 145 0.664224 TTTCCGGTGAAAAACGAGGC 59.336 50.000 0.00 0.00 37.53 4.70
145 146 1.944709 AGTTTCCGGTGAAAAACGAGG 59.055 47.619 0.00 0.00 41.92 4.63
146 147 3.685836 AAGTTTCCGGTGAAAAACGAG 57.314 42.857 0.00 0.00 41.92 4.18
147 148 3.190953 ACAAAGTTTCCGGTGAAAAACGA 59.809 39.130 0.00 0.00 41.92 3.85
148 149 3.302170 CACAAAGTTTCCGGTGAAAAACG 59.698 43.478 0.00 0.00 41.92 3.60
149 150 3.061563 GCACAAAGTTTCCGGTGAAAAAC 59.938 43.478 0.00 4.71 41.92 2.43
150 151 3.254892 GCACAAAGTTTCCGGTGAAAAA 58.745 40.909 0.00 0.00 41.92 1.94
151 152 2.231478 TGCACAAAGTTTCCGGTGAAAA 59.769 40.909 0.00 0.00 41.92 2.29
152 153 1.819288 TGCACAAAGTTTCCGGTGAAA 59.181 42.857 0.00 0.00 38.14 2.69
153 154 1.133407 GTGCACAAAGTTTCCGGTGAA 59.867 47.619 13.17 0.00 33.16 3.18
154 155 0.736053 GTGCACAAAGTTTCCGGTGA 59.264 50.000 13.17 0.00 33.16 4.02
155 156 0.591236 CGTGCACAAAGTTTCCGGTG 60.591 55.000 18.64 0.00 0.00 4.94
156 157 1.725066 CGTGCACAAAGTTTCCGGT 59.275 52.632 18.64 0.00 0.00 5.28
157 158 1.657181 GCGTGCACAAAGTTTCCGG 60.657 57.895 18.64 0.00 0.00 5.14
158 159 1.063327 TGCGTGCACAAAGTTTCCG 59.937 52.632 18.64 0.00 0.00 4.30
159 160 1.199852 CGTGCGTGCACAAAGTTTCC 61.200 55.000 23.26 0.00 46.47 3.13
160 161 0.522495 ACGTGCGTGCACAAAGTTTC 60.522 50.000 23.26 0.00 46.47 2.78
161 162 0.727970 TACGTGCGTGCACAAAGTTT 59.272 45.000 23.26 0.00 46.47 2.66
162 163 0.727970 TTACGTGCGTGCACAAAGTT 59.272 45.000 23.26 0.00 46.47 2.66
163 164 0.727970 TTTACGTGCGTGCACAAAGT 59.272 45.000 23.26 14.55 46.47 2.66
164 165 1.816370 TTTTACGTGCGTGCACAAAG 58.184 45.000 23.26 9.18 46.47 2.77
165 166 2.112522 CATTTTACGTGCGTGCACAAA 58.887 42.857 23.26 16.25 46.47 2.83
166 167 1.064208 ACATTTTACGTGCGTGCACAA 59.936 42.857 23.26 11.18 46.47 3.33
167 168 0.658368 ACATTTTACGTGCGTGCACA 59.342 45.000 23.26 5.18 46.47 4.57
168 169 1.070175 AGACATTTTACGTGCGTGCAC 60.070 47.619 14.81 14.81 43.01 4.57
169 170 1.070242 CAGACATTTTACGTGCGTGCA 60.070 47.619 7.55 0.00 0.00 4.57
170 171 1.591248 CAGACATTTTACGTGCGTGC 58.409 50.000 7.55 0.00 0.00 5.34
171 172 1.795872 TCCAGACATTTTACGTGCGTG 59.204 47.619 7.55 0.00 0.00 5.34
172 173 2.157834 TCCAGACATTTTACGTGCGT 57.842 45.000 0.00 2.05 0.00 5.24
173 174 5.460748 TGTATATCCAGACATTTTACGTGCG 59.539 40.000 0.00 0.00 0.00 5.34
174 175 6.561533 CGTGTATATCCAGACATTTTACGTGC 60.562 42.308 0.00 0.00 0.00 5.34
175 176 6.474427 ACGTGTATATCCAGACATTTTACGTG 59.526 38.462 0.00 0.00 27.07 4.49
176 177 6.474427 CACGTGTATATCCAGACATTTTACGT 59.526 38.462 7.58 0.00 27.72 3.57
177 178 6.074516 CCACGTGTATATCCAGACATTTTACG 60.075 42.308 15.65 0.00 0.00 3.18
178 179 6.202188 CCCACGTGTATATCCAGACATTTTAC 59.798 42.308 15.65 0.00 0.00 2.01
179 180 6.098552 TCCCACGTGTATATCCAGACATTTTA 59.901 38.462 15.65 0.00 0.00 1.52
180 181 5.104693 TCCCACGTGTATATCCAGACATTTT 60.105 40.000 15.65 0.00 0.00 1.82
181 182 4.407621 TCCCACGTGTATATCCAGACATTT 59.592 41.667 15.65 0.00 0.00 2.32
182 183 3.964688 TCCCACGTGTATATCCAGACATT 59.035 43.478 15.65 0.00 0.00 2.71
183 184 3.572642 TCCCACGTGTATATCCAGACAT 58.427 45.455 15.65 0.00 0.00 3.06
184 185 3.021177 TCCCACGTGTATATCCAGACA 57.979 47.619 15.65 0.00 0.00 3.41
185 186 4.602340 AATCCCACGTGTATATCCAGAC 57.398 45.455 15.65 0.00 0.00 3.51
186 187 5.623956 AAAATCCCACGTGTATATCCAGA 57.376 39.130 15.65 0.00 0.00 3.86
187 188 5.588648 ACAAAAATCCCACGTGTATATCCAG 59.411 40.000 15.65 1.37 0.00 3.86
188 189 5.502079 ACAAAAATCCCACGTGTATATCCA 58.498 37.500 15.65 0.00 0.00 3.41
189 190 6.094325 TGAACAAAAATCCCACGTGTATATCC 59.906 38.462 15.65 0.00 0.00 2.59
190 191 7.065324 TCTGAACAAAAATCCCACGTGTATATC 59.935 37.037 15.65 0.00 0.00 1.63
191 192 6.882140 TCTGAACAAAAATCCCACGTGTATAT 59.118 34.615 15.65 1.65 0.00 0.86
192 193 6.231951 TCTGAACAAAAATCCCACGTGTATA 58.768 36.000 15.65 0.00 0.00 1.47
193 194 5.067273 TCTGAACAAAAATCCCACGTGTAT 58.933 37.500 15.65 4.75 0.00 2.29
194 195 4.452825 TCTGAACAAAAATCCCACGTGTA 58.547 39.130 15.65 2.16 0.00 2.90
195 196 3.283751 TCTGAACAAAAATCCCACGTGT 58.716 40.909 15.65 0.00 0.00 4.49
196 197 3.980646 TCTGAACAAAAATCCCACGTG 57.019 42.857 9.08 9.08 0.00 4.49
197 198 5.529581 AATTCTGAACAAAAATCCCACGT 57.470 34.783 0.00 0.00 0.00 4.49
198 199 6.843069 AAAATTCTGAACAAAAATCCCACG 57.157 33.333 0.00 0.00 0.00 4.94
199 200 8.207521 TGAAAAATTCTGAACAAAAATCCCAC 57.792 30.769 0.00 0.00 0.00 4.61
200 201 8.672815 GTTGAAAAATTCTGAACAAAAATCCCA 58.327 29.630 0.00 0.00 0.00 4.37
201 202 8.892723 AGTTGAAAAATTCTGAACAAAAATCCC 58.107 29.630 0.00 0.00 0.00 3.85
228 229 9.703892 CCCATTGTCTAAATACACATTTTGAAA 57.296 29.630 0.00 0.00 37.54 2.69
229 230 8.865090 ACCCATTGTCTAAATACACATTTTGAA 58.135 29.630 0.00 0.00 37.54 2.69
230 231 8.303156 CACCCATTGTCTAAATACACATTTTGA 58.697 33.333 0.00 0.00 35.88 2.69
231 232 8.087750 ACACCCATTGTCTAAATACACATTTTG 58.912 33.333 0.00 0.00 32.68 2.44
232 233 8.189119 ACACCCATTGTCTAAATACACATTTT 57.811 30.769 0.00 0.00 32.68 1.82
233 234 7.775053 ACACCCATTGTCTAAATACACATTT 57.225 32.000 0.00 0.00 34.20 2.32
236 237 9.554395 CATATACACCCATTGTCTAAATACACA 57.446 33.333 0.00 0.00 39.91 3.72
237 238 9.555727 ACATATACACCCATTGTCTAAATACAC 57.444 33.333 0.00 0.00 39.91 2.90
241 242 8.945193 AGGTACATATACACCCATTGTCTAAAT 58.055 33.333 0.00 0.00 39.91 1.40
242 243 8.326765 AGGTACATATACACCCATTGTCTAAA 57.673 34.615 0.00 0.00 39.91 1.85
243 244 7.924358 AGGTACATATACACCCATTGTCTAA 57.076 36.000 0.00 0.00 39.91 2.10
244 245 8.450434 TCTAGGTACATATACACCCATTGTCTA 58.550 37.037 0.00 0.00 39.91 2.59
245 246 7.302948 TCTAGGTACATATACACCCATTGTCT 58.697 38.462 0.00 0.00 39.91 3.41
246 247 7.534723 TCTAGGTACATATACACCCATTGTC 57.465 40.000 0.00 0.00 39.91 3.18
247 248 7.472945 GCTTCTAGGTACATATACACCCATTGT 60.473 40.741 0.00 0.00 42.84 2.71
248 249 6.874134 GCTTCTAGGTACATATACACCCATTG 59.126 42.308 0.00 0.00 35.25 2.82
249 250 6.013639 GGCTTCTAGGTACATATACACCCATT 60.014 42.308 0.00 0.00 35.25 3.16
250 251 5.484290 GGCTTCTAGGTACATATACACCCAT 59.516 44.000 0.00 0.00 35.25 4.00
251 252 4.836736 GGCTTCTAGGTACATATACACCCA 59.163 45.833 0.00 0.00 35.25 4.51
252 253 4.836736 TGGCTTCTAGGTACATATACACCC 59.163 45.833 0.00 0.00 35.25 4.61
253 254 6.607004 ATGGCTTCTAGGTACATATACACC 57.393 41.667 0.00 0.00 32.40 4.16
254 255 7.259161 GCTATGGCTTCTAGGTACATATACAC 58.741 42.308 0.00 0.00 32.36 2.90
255 256 6.380274 GGCTATGGCTTCTAGGTACATATACA 59.620 42.308 0.00 0.00 38.73 2.29
256 257 6.380274 TGGCTATGGCTTCTAGGTACATATAC 59.620 42.308 0.00 0.00 38.73 1.47
257 258 6.499436 TGGCTATGGCTTCTAGGTACATATA 58.501 40.000 0.00 0.00 38.73 0.86
258 259 5.342017 TGGCTATGGCTTCTAGGTACATAT 58.658 41.667 0.00 0.00 38.73 1.78
259 260 4.747583 TGGCTATGGCTTCTAGGTACATA 58.252 43.478 0.00 0.00 38.73 2.29
260 261 3.587498 TGGCTATGGCTTCTAGGTACAT 58.413 45.455 0.00 0.00 38.73 2.29
261 262 3.040655 TGGCTATGGCTTCTAGGTACA 57.959 47.619 0.00 0.00 38.73 2.90
262 263 4.625607 ATTGGCTATGGCTTCTAGGTAC 57.374 45.455 0.00 0.00 38.73 3.34
263 264 5.012768 GGTAATTGGCTATGGCTTCTAGGTA 59.987 44.000 0.00 0.00 38.73 3.08
264 265 4.202472 GGTAATTGGCTATGGCTTCTAGGT 60.202 45.833 0.00 0.00 38.73 3.08
265 266 4.327680 GGTAATTGGCTATGGCTTCTAGG 58.672 47.826 0.00 0.00 38.73 3.02
266 267 3.997021 CGGTAATTGGCTATGGCTTCTAG 59.003 47.826 0.00 0.00 38.73 2.43
267 268 3.644265 TCGGTAATTGGCTATGGCTTCTA 59.356 43.478 0.00 0.00 38.73 2.10
268 269 2.438021 TCGGTAATTGGCTATGGCTTCT 59.562 45.455 0.00 0.00 38.73 2.85
269 270 2.846193 TCGGTAATTGGCTATGGCTTC 58.154 47.619 0.00 0.00 38.73 3.86
270 271 3.290948 TTCGGTAATTGGCTATGGCTT 57.709 42.857 0.00 0.00 38.73 4.35
271 272 3.290948 TTTCGGTAATTGGCTATGGCT 57.709 42.857 0.00 0.00 38.73 4.75
272 273 4.584327 AATTTCGGTAATTGGCTATGGC 57.416 40.909 0.00 0.00 35.15 4.40
273 274 6.627395 TGTAATTTCGGTAATTGGCTATGG 57.373 37.500 3.21 0.00 37.07 2.74
274 275 7.643764 CACTTGTAATTTCGGTAATTGGCTATG 59.356 37.037 3.21 0.00 37.07 2.23
275 276 7.338449 ACACTTGTAATTTCGGTAATTGGCTAT 59.662 33.333 3.21 0.00 37.07 2.97
276 277 6.655848 ACACTTGTAATTTCGGTAATTGGCTA 59.344 34.615 3.21 0.00 37.07 3.93
277 278 5.475564 ACACTTGTAATTTCGGTAATTGGCT 59.524 36.000 3.21 0.00 37.07 4.75
278 279 5.705902 ACACTTGTAATTTCGGTAATTGGC 58.294 37.500 3.21 0.00 37.07 4.52
291 292 9.609346 GGTGGACAACTATATAACACTTGTAAT 57.391 33.333 0.00 0.00 0.00 1.89
292 293 7.760794 CGGTGGACAACTATATAACACTTGTAA 59.239 37.037 0.00 0.00 0.00 2.41
293 294 7.259882 CGGTGGACAACTATATAACACTTGTA 58.740 38.462 0.00 0.00 0.00 2.41
294 295 6.103997 CGGTGGACAACTATATAACACTTGT 58.896 40.000 0.00 0.00 0.00 3.16
295 296 5.006358 GCGGTGGACAACTATATAACACTTG 59.994 44.000 0.00 0.00 0.00 3.16
296 297 5.114081 GCGGTGGACAACTATATAACACTT 58.886 41.667 0.00 0.00 0.00 3.16
297 298 4.160814 TGCGGTGGACAACTATATAACACT 59.839 41.667 0.00 0.00 0.00 3.55
298 299 4.435425 TGCGGTGGACAACTATATAACAC 58.565 43.478 0.00 0.00 0.00 3.32
299 300 4.739587 TGCGGTGGACAACTATATAACA 57.260 40.909 0.00 0.00 0.00 2.41
300 301 6.425577 TTTTGCGGTGGACAACTATATAAC 57.574 37.500 0.00 0.00 0.00 1.89
324 325 9.046296 CGTCAATTCTATAAGCTTATCAGGTTT 57.954 33.333 22.09 8.58 41.18 3.27
325 326 7.171678 GCGTCAATTCTATAAGCTTATCAGGTT 59.828 37.037 22.09 10.82 43.37 3.50
326 327 6.647067 GCGTCAATTCTATAAGCTTATCAGGT 59.353 38.462 22.09 1.88 0.00 4.00
327 328 6.870965 AGCGTCAATTCTATAAGCTTATCAGG 59.129 38.462 22.09 13.40 0.00 3.86
328 329 7.881643 AGCGTCAATTCTATAAGCTTATCAG 57.118 36.000 22.09 16.44 0.00 2.90
329 330 7.114953 CGAAGCGTCAATTCTATAAGCTTATCA 59.885 37.037 22.09 7.99 42.54 2.15
330 331 7.115095 ACGAAGCGTCAATTCTATAAGCTTATC 59.885 37.037 22.09 5.01 42.54 1.75
331 332 6.924060 ACGAAGCGTCAATTCTATAAGCTTAT 59.076 34.615 22.09 22.09 42.54 1.73
332 333 6.198403 CACGAAGCGTCAATTCTATAAGCTTA 59.802 38.462 8.99 8.99 42.54 3.09
333 334 5.005779 CACGAAGCGTCAATTCTATAAGCTT 59.994 40.000 3.48 3.48 44.74 3.74
334 335 4.504461 CACGAAGCGTCAATTCTATAAGCT 59.496 41.667 0.00 0.00 38.32 3.74
335 336 4.267928 ACACGAAGCGTCAATTCTATAAGC 59.732 41.667 0.00 0.00 38.32 3.09
336 337 5.515270 TCACACGAAGCGTCAATTCTATAAG 59.485 40.000 0.00 0.00 38.32 1.73
337 338 5.404096 TCACACGAAGCGTCAATTCTATAA 58.596 37.500 0.00 0.00 38.32 0.98
338 339 4.989044 TCACACGAAGCGTCAATTCTATA 58.011 39.130 0.00 0.00 38.32 1.31
339 340 3.845178 TCACACGAAGCGTCAATTCTAT 58.155 40.909 0.00 0.00 38.32 1.98
340 341 3.291809 TCACACGAAGCGTCAATTCTA 57.708 42.857 0.00 0.00 38.32 2.10
341 342 2.148916 TCACACGAAGCGTCAATTCT 57.851 45.000 0.00 0.00 38.32 2.40
342 343 2.560896 GTTCACACGAAGCGTCAATTC 58.439 47.619 0.00 0.00 38.32 2.17
343 344 2.663279 GTTCACACGAAGCGTCAATT 57.337 45.000 0.00 0.00 38.32 2.32
368 369 0.965866 ACCTCAGAGCGATCGGTCAA 60.966 55.000 39.18 28.12 44.24 3.18
381 382 0.321564 TGGAATCCAACGCACCTCAG 60.322 55.000 0.00 0.00 0.00 3.35
392 393 1.677576 GAGATTTGCGCATGGAATCCA 59.322 47.619 23.17 3.67 38.19 3.41
447 448 5.383130 GGAGTCTACAAAACGAAGCATTTC 58.617 41.667 0.00 0.00 0.00 2.17
506 508 9.942850 CCACTTGTTTAGGATTTAAAAATGGAT 57.057 29.630 0.00 0.00 0.00 3.41
507 509 8.929487 ACCACTTGTTTAGGATTTAAAAATGGA 58.071 29.630 0.00 0.00 0.00 3.41
508 510 9.554395 AACCACTTGTTTAGGATTTAAAAATGG 57.446 29.630 0.00 0.00 31.47 3.16
536 538 5.578005 AGGCAGAATTTGACATGATCTTG 57.422 39.130 0.00 7.04 37.23 3.02
628 631 3.561503 GGCTTTACGAAAACACCATGTC 58.438 45.455 0.00 0.00 0.00 3.06
641 644 3.633525 GGGGGTAATTAAAGGGCTTTACG 59.366 47.826 0.00 0.00 35.05 3.18
655 658 3.660959 TGTTCTATTCCGAGGGGGTAAT 58.339 45.455 0.00 0.00 37.00 1.89
675 678 1.595328 TCCGTGTTTCAACGTGTCATG 59.405 47.619 0.00 0.00 42.01 3.07
754 1549 7.639945 TGACGATTTCCTCTCTTTTCTTTTTC 58.360 34.615 0.00 0.00 0.00 2.29
755 1550 7.568199 TGACGATTTCCTCTCTTTTCTTTTT 57.432 32.000 0.00 0.00 0.00 1.94
764 1559 3.006537 TCGGTTTTGACGATTTCCTCTCT 59.993 43.478 0.00 0.00 35.12 3.10
765 1560 3.323243 TCGGTTTTGACGATTTCCTCTC 58.677 45.455 0.00 0.00 35.12 3.20
766 1561 3.396260 TCGGTTTTGACGATTTCCTCT 57.604 42.857 0.00 0.00 35.12 3.69
792 1587 5.900339 TTTATGTCAGTGTCGTGTCTTTC 57.100 39.130 0.00 0.00 0.00 2.62
811 1606 6.205853 TCGCAGAGTTTAAAGCCTGAAATTTA 59.794 34.615 16.64 0.00 0.00 1.40
819 1614 4.072131 TCATTTCGCAGAGTTTAAAGCCT 58.928 39.130 0.00 0.00 38.43 4.58
837 1632 1.063183 GAGGCTAGGGGCATCTCATT 58.937 55.000 0.00 0.00 46.73 2.57
854 1653 1.202452 TGTCATCGTGCTGCTATGGAG 60.202 52.381 0.00 0.00 0.00 3.86
862 1661 3.291585 GTCTTTGTTTGTCATCGTGCTG 58.708 45.455 0.00 0.00 0.00 4.41
870 1669 3.118261 AGAGAGCTGGTCTTTGTTTGTCA 60.118 43.478 11.11 0.00 34.71 3.58
897 1696 2.231380 GGCACAAGGGGAAGAGGGA 61.231 63.158 0.00 0.00 0.00 4.20
898 1697 2.356667 GGCACAAGGGGAAGAGGG 59.643 66.667 0.00 0.00 0.00 4.30
993 1793 3.015383 GCAGGGGGCTTATGGGAA 58.985 61.111 0.00 0.00 40.25 3.97
1007 1807 2.365370 AGGAGGAGGCAGGAGCAG 60.365 66.667 0.00 0.00 44.61 4.24
1056 1856 3.932313 GACGTTTGCGCGTGGTGT 61.932 61.111 8.43 0.00 45.79 4.16
1083 1883 3.886505 GAGGGTGTTGTGTGGAAATACAA 59.113 43.478 0.00 0.00 34.66 2.41
1084 1884 3.482436 GAGGGTGTTGTGTGGAAATACA 58.518 45.455 0.00 0.00 0.00 2.29
1093 1902 0.400815 TACAGGGGAGGGTGTTGTGT 60.401 55.000 0.00 0.00 0.00 3.72
1115 1924 2.338620 CGCTGTCGGAGTTGGTCA 59.661 61.111 0.00 0.00 0.00 4.02
1143 1952 2.050714 GTTGTCGACACGGCTCGA 60.051 61.111 19.90 0.00 40.37 4.04
1346 2187 1.189524 AGTTGGTGTAGTAGCCGGCA 61.190 55.000 31.54 12.31 0.00 5.69
1485 2327 2.561569 GTGGACCAGGTAATCAATCCG 58.438 52.381 0.00 0.00 0.00 4.18
1556 2401 9.230122 CAGGCCAACCAAAAAGAAATAAATAAT 57.770 29.630 5.01 0.00 39.06 1.28
1557 2402 7.663493 CCAGGCCAACCAAAAAGAAATAAATAA 59.337 33.333 5.01 0.00 39.06 1.40
1558 2403 7.016661 TCCAGGCCAACCAAAAAGAAATAAATA 59.983 33.333 5.01 0.00 39.06 1.40
1559 2404 6.003326 CCAGGCCAACCAAAAAGAAATAAAT 58.997 36.000 5.01 0.00 39.06 1.40
1658 2503 8.301720 ACGGAATAACAATAGTATATCGAAGCA 58.698 33.333 0.00 0.00 0.00 3.91
1659 2504 8.684973 ACGGAATAACAATAGTATATCGAAGC 57.315 34.615 0.00 0.00 0.00 3.86
1664 2509 7.031372 TGCCGACGGAATAACAATAGTATATC 58.969 38.462 20.50 0.00 0.00 1.63
1735 2580 0.749649 ACTAGGCAAGCATCTCGGAG 59.250 55.000 0.00 0.00 0.00 4.63
1750 2595 9.213799 AGATTCTTCTTCTTGTAAAGCAACTAG 57.786 33.333 0.00 0.00 45.70 2.57
1917 2762 3.362851 GATCGTTTCACGGCCGCAC 62.363 63.158 28.58 15.99 42.81 5.34
1959 2805 1.989864 CGTCAGCGTGCACAAGTATTA 59.010 47.619 18.64 0.00 0.00 0.98
1960 2806 0.790207 CGTCAGCGTGCACAAGTATT 59.210 50.000 18.64 0.00 0.00 1.89
1961 2807 0.038618 TCGTCAGCGTGCACAAGTAT 60.039 50.000 18.64 0.00 39.49 2.12
1978 2824 2.938451 TCTACTTTGGCAGCATGAATCG 59.062 45.455 0.00 0.00 39.69 3.34
2004 2850 6.497437 GGAGTATCTCTTAACGAACTCCTTC 58.503 44.000 11.19 0.00 46.16 3.46
2026 2872 3.211865 CTGCATAGTGGAGTACGTAGGA 58.788 50.000 0.00 0.00 30.66 2.94
2027 2873 2.287668 GCTGCATAGTGGAGTACGTAGG 60.288 54.545 0.00 0.00 38.17 3.18
2028 2874 2.619177 AGCTGCATAGTGGAGTACGTAG 59.381 50.000 1.02 0.00 38.17 3.51
2029 2875 2.651455 AGCTGCATAGTGGAGTACGTA 58.349 47.619 1.02 0.00 38.17 3.57
2030 2876 1.475403 AGCTGCATAGTGGAGTACGT 58.525 50.000 1.02 0.00 38.17 3.57
2031 2877 2.196749 CAAGCTGCATAGTGGAGTACG 58.803 52.381 1.02 0.00 38.17 3.67
2032 2878 1.936547 GCAAGCTGCATAGTGGAGTAC 59.063 52.381 1.02 0.00 44.26 2.73
2033 2879 2.315925 GCAAGCTGCATAGTGGAGTA 57.684 50.000 1.02 0.00 44.26 2.59
2034 2880 3.165606 GCAAGCTGCATAGTGGAGT 57.834 52.632 1.02 0.00 44.26 3.85
2120 2969 3.820467 TGGCAGGAACAAGTATTCAAGTG 59.180 43.478 0.00 0.00 0.00 3.16
2211 3094 5.010617 GGCTGTAGATGAAAACAGGGAAAAA 59.989 40.000 4.79 0.00 42.72 1.94
2350 3233 4.129380 GGATATGCAGCACACACTGATTA 58.871 43.478 0.00 0.00 40.25 1.75
2394 3279 8.397906 TCTTCTTCACACAACTATTTGAACAAG 58.602 33.333 0.00 0.00 36.48 3.16
2495 3380 6.867816 GCAAATGAATACAGAAACCATGTGAA 59.132 34.615 0.00 0.00 32.02 3.18
2705 3591 8.589701 TTTCATGATAGTAGTGAGGAAGTACA 57.410 34.615 0.00 0.00 37.18 2.90
2825 3711 4.940654 TGCCAACGAATATCAAGAATGTCA 59.059 37.500 0.00 0.00 0.00 3.58
2990 3876 0.539669 CACCCTTCACAAACCTCCCC 60.540 60.000 0.00 0.00 0.00 4.81
2993 3879 2.879026 GTTCTCACCCTTCACAAACCTC 59.121 50.000 0.00 0.00 0.00 3.85
3032 3918 1.950216 TCAAGCGCGACTCTCTGATAT 59.050 47.619 12.10 0.00 0.00 1.63
3074 3960 0.456221 ACAGGTCATCGTCGGTGATC 59.544 55.000 12.08 11.48 0.00 2.92
3104 3990 4.520179 CACTTGGGATCTCATCAACATCA 58.480 43.478 0.00 0.00 0.00 3.07
3245 4131 1.022735 CCGCTCGGTATCTGTGTACT 58.977 55.000 0.00 0.00 0.00 2.73
3414 4300 3.321682 TGCTGAATTCTTTTGGGGTTCAG 59.678 43.478 7.05 8.60 45.21 3.02
3515 4401 4.682320 GCTGAATACGTACTTGGGATTGGA 60.682 45.833 0.00 0.00 0.00 3.53
3518 4404 3.454375 CGCTGAATACGTACTTGGGATT 58.546 45.455 0.00 0.00 0.00 3.01
3628 4514 1.133025 CACATCTTGATGGAAACGGCC 59.867 52.381 14.18 0.00 0.00 6.13
3771 4658 1.306911 TATGCTGTCAGGCCCTCCA 60.307 57.895 0.00 0.00 33.74 3.86
3817 4704 7.544804 AGCTCCTCTTCCAAAAATAAAACAT 57.455 32.000 0.00 0.00 0.00 2.71
3927 4825 2.950975 TGAGAAACTGCTGCAAATGTCA 59.049 40.909 3.02 4.39 0.00 3.58
3928 4826 3.631145 TGAGAAACTGCTGCAAATGTC 57.369 42.857 3.02 0.00 0.00 3.06
4050 4955 1.448540 CCCTGACAGCAGTAAGGCG 60.449 63.158 7.15 0.00 44.18 5.52
4051 4956 1.078143 CCCCTGACAGCAGTAAGGC 60.078 63.158 7.15 0.00 44.18 4.35
4052 4957 1.078143 GCCCCTGACAGCAGTAAGG 60.078 63.158 5.63 5.63 45.01 2.69
4053 4958 1.078143 GGCCCCTGACAGCAGTAAG 60.078 63.158 0.00 0.00 40.63 2.34
4054 4959 1.207488 ATGGCCCCTGACAGCAGTAA 61.207 55.000 0.00 0.00 40.63 2.24
4055 4960 1.616327 ATGGCCCCTGACAGCAGTA 60.616 57.895 0.00 0.00 40.63 2.74
4099 5004 3.118261 GGCATCACATGTTAAGAGGAGGA 60.118 47.826 0.00 0.00 0.00 3.71
4100 5005 3.209410 GGCATCACATGTTAAGAGGAGG 58.791 50.000 0.00 0.00 0.00 4.30
4101 5006 2.868583 CGGCATCACATGTTAAGAGGAG 59.131 50.000 0.00 0.00 0.00 3.69
4172 5077 3.761218 TGTGACTGTTGGCAAAAGAAAGA 59.239 39.130 23.90 7.08 0.00 2.52
4173 5078 4.107622 CTGTGACTGTTGGCAAAAGAAAG 58.892 43.478 23.90 10.78 0.00 2.62
4174 5079 3.119173 CCTGTGACTGTTGGCAAAAGAAA 60.119 43.478 23.90 8.41 0.00 2.52
4175 5080 2.426738 CCTGTGACTGTTGGCAAAAGAA 59.573 45.455 23.90 8.77 0.00 2.52
4254 5160 3.138798 CAGCTGCCAGTGATGCCC 61.139 66.667 0.00 0.00 0.00 5.36
4295 5201 3.751246 CCCACCCACATTGCAGCG 61.751 66.667 0.00 0.00 0.00 5.18
4301 5207 1.228862 GCCTGTTCCCACCCACATT 60.229 57.895 0.00 0.00 0.00 2.71
4387 5293 4.821589 CGCACGGAGAGGAAGGCC 62.822 72.222 0.00 0.00 0.00 5.19
4463 6981 3.629855 TGGCAACGTTTCTCTGAAAATCA 59.370 39.130 0.00 0.00 42.51 2.57
4464 6982 4.222114 CTGGCAACGTTTCTCTGAAAATC 58.778 43.478 0.00 0.00 42.51 2.17
4465 6983 3.632145 ACTGGCAACGTTTCTCTGAAAAT 59.368 39.130 0.00 0.00 42.51 1.82
4517 7035 6.044682 CCACATAAAATCTGCAATTTCCCTC 58.955 40.000 7.13 0.00 0.00 4.30
4521 7039 8.496707 AAATCCCACATAAAATCTGCAATTTC 57.503 30.769 7.13 0.00 0.00 2.17
4640 7159 2.035449 CCTTATCCGTATGCCTTCGTGA 59.965 50.000 0.00 0.00 0.00 4.35
4643 7162 1.429463 GCCTTATCCGTATGCCTTCG 58.571 55.000 0.00 0.00 0.00 3.79
4653 7172 1.396996 CGTTGAAGTTGGCCTTATCCG 59.603 52.381 3.32 0.00 32.03 4.18
4661 7180 1.235281 GGGTCTCCGTTGAAGTTGGC 61.235 60.000 0.00 0.00 0.00 4.52
4675 7203 1.545841 GGGAGAAAAATTGCGGGTCT 58.454 50.000 0.00 0.00 0.00 3.85
4679 7207 0.173255 ATGCGGGAGAAAAATTGCGG 59.827 50.000 0.00 0.00 0.00 5.69
4685 7213 0.675522 GGACGGATGCGGGAGAAAAA 60.676 55.000 12.44 0.00 0.00 1.94
4708 7236 1.663695 CGTGGACTGGTCACTTTGTT 58.336 50.000 3.10 0.00 33.31 2.83
4710 7238 1.831389 CGCGTGGACTGGTCACTTTG 61.831 60.000 0.00 0.00 33.31 2.77
4715 7243 2.557059 CTATGCGCGTGGACTGGTCA 62.557 60.000 13.61 0.00 0.00 4.02
4716 7244 1.878522 CTATGCGCGTGGACTGGTC 60.879 63.158 13.61 0.00 0.00 4.02
4718 7246 1.068083 ATCTATGCGCGTGGACTGG 59.932 57.895 18.56 0.00 0.00 4.00
4719 7247 0.528466 ACATCTATGCGCGTGGACTG 60.528 55.000 18.56 17.84 0.00 3.51
4721 7249 1.927210 CACATCTATGCGCGTGGAC 59.073 57.895 18.56 0.00 0.00 4.02
4723 7251 2.246739 CCCACATCTATGCGCGTGG 61.247 63.158 19.31 19.31 46.93 4.94
4724 7252 1.217585 CTCCCACATCTATGCGCGTG 61.218 60.000 13.61 8.18 0.00 5.34
4725 7253 1.068083 CTCCCACATCTATGCGCGT 59.932 57.895 8.43 7.55 0.00 6.01
4727 7255 1.963338 GCCTCCCACATCTATGCGC 60.963 63.158 0.00 0.00 0.00 6.09
4728 7256 1.302033 GGCCTCCCACATCTATGCG 60.302 63.158 0.00 0.00 0.00 4.73
4729 7257 1.302033 CGGCCTCCCACATCTATGC 60.302 63.158 0.00 0.00 0.00 3.14
4730 7258 1.302033 GCGGCCTCCCACATCTATG 60.302 63.158 0.00 0.00 0.00 2.23
4731 7259 0.178932 TAGCGGCCTCCCACATCTAT 60.179 55.000 0.00 0.00 0.00 1.98
4732 7260 1.113517 GTAGCGGCCTCCCACATCTA 61.114 60.000 0.00 0.00 0.00 1.98
4738 7269 2.062177 GTTAGGTAGCGGCCTCCCA 61.062 63.158 0.00 0.00 39.94 4.37
4747 7278 1.877165 GCGGTCAGCGTTAGGTAGC 60.877 63.158 0.00 0.00 35.41 3.58
4762 7293 1.364721 TGTTGTCGGAATGTATGCGG 58.635 50.000 0.00 0.00 43.88 5.69
4764 7295 4.980590 TGAATTGTTGTCGGAATGTATGC 58.019 39.130 0.00 0.00 0.00 3.14
4770 7301 7.272037 AGTTAGTTTGAATTGTTGTCGGAAT 57.728 32.000 0.00 0.00 0.00 3.01
4772 7303 7.170320 GTCTAGTTAGTTTGAATTGTTGTCGGA 59.830 37.037 0.00 0.00 0.00 4.55
4774 7305 7.847487 TGTCTAGTTAGTTTGAATTGTTGTCG 58.153 34.615 0.00 0.00 0.00 4.35
4795 7326 2.817258 TGAAATCCGGCGAATTTTGTCT 59.183 40.909 9.30 0.00 0.00 3.41
4807 7338 5.106712 CCCGTCATGTTTATATGAAATCCGG 60.107 44.000 0.00 0.00 40.14 5.14
4827 7358 8.671028 GTTAGATGTAAATGTAATGAAACCCGT 58.329 33.333 0.00 0.00 0.00 5.28
4831 7362 8.671028 ACCGGTTAGATGTAAATGTAATGAAAC 58.329 33.333 0.00 0.00 0.00 2.78
4861 7395 5.048507 GTGTATTACCTTTAGAGCCGGAAG 58.951 45.833 5.05 0.00 0.00 3.46
4862 7396 4.141869 GGTGTATTACCTTTAGAGCCGGAA 60.142 45.833 5.05 0.00 46.51 4.30
4884 7424 2.002586 CGCCGGCAATCATAGATTAGG 58.997 52.381 28.98 0.00 0.00 2.69
4900 7440 1.082117 AACATAGGAAACGAGCGCCG 61.082 55.000 15.25 15.25 45.44 6.46
4903 7443 0.921347 CCGAACATAGGAAACGAGCG 59.079 55.000 0.00 0.00 0.00 5.03
4905 7445 2.295253 AGCCGAACATAGGAAACGAG 57.705 50.000 0.00 0.00 0.00 4.18
4908 7448 3.495001 GCTCATAGCCGAACATAGGAAAC 59.505 47.826 0.00 0.00 34.48 2.78
4924 7464 5.489792 AGTTTCAGTTCTCAAGGCTCATA 57.510 39.130 0.00 0.00 0.00 2.15
4932 7472 7.545362 CTGAAGAAGAAGTTTCAGTTCTCAA 57.455 36.000 6.16 0.00 43.25 3.02
4945 7485 5.201181 GCTGAAACGAAACTGAAGAAGAAG 58.799 41.667 0.00 0.00 0.00 2.85
4949 7489 3.541632 AGGCTGAAACGAAACTGAAGAA 58.458 40.909 0.00 0.00 0.00 2.52
4955 7495 1.228657 GCGGAGGCTGAAACGAAACT 61.229 55.000 0.00 0.00 35.83 2.66
4956 7496 1.206831 GCGGAGGCTGAAACGAAAC 59.793 57.895 0.00 0.00 35.83 2.78
4957 7497 0.816018 TTGCGGAGGCTGAAACGAAA 60.816 50.000 0.00 0.00 40.82 3.46
4958 7498 1.227704 TTGCGGAGGCTGAAACGAA 60.228 52.632 0.00 0.00 40.82 3.85
4959 7499 1.959226 GTTGCGGAGGCTGAAACGA 60.959 57.895 0.00 0.00 40.82 3.85
4960 7500 2.556287 GTTGCGGAGGCTGAAACG 59.444 61.111 0.00 0.00 40.82 3.60
4961 7501 1.896660 TGGTTGCGGAGGCTGAAAC 60.897 57.895 0.00 0.00 40.82 2.78
4962 7502 1.896660 GTGGTTGCGGAGGCTGAAA 60.897 57.895 0.00 0.00 40.82 2.69
4963 7503 2.281484 GTGGTTGCGGAGGCTGAA 60.281 61.111 0.00 0.00 40.82 3.02
4964 7504 4.329545 GGTGGTTGCGGAGGCTGA 62.330 66.667 0.00 0.00 40.82 4.26
4972 7512 3.726517 CTGAAGGCGGTGGTTGCG 61.727 66.667 0.00 0.00 0.00 4.85
4973 7513 2.281484 TCTGAAGGCGGTGGTTGC 60.281 61.111 0.00 0.00 0.00 4.17
4974 7514 0.951040 GTCTCTGAAGGCGGTGGTTG 60.951 60.000 0.00 0.00 0.00 3.77
4975 7515 1.371558 GTCTCTGAAGGCGGTGGTT 59.628 57.895 0.00 0.00 0.00 3.67
4976 7516 2.584391 GGTCTCTGAAGGCGGTGGT 61.584 63.158 0.00 0.00 0.00 4.16
4977 7517 2.266055 GGTCTCTGAAGGCGGTGG 59.734 66.667 0.00 0.00 0.00 4.61
4978 7518 2.266055 GGGTCTCTGAAGGCGGTG 59.734 66.667 0.00 0.00 0.00 4.94
4979 7519 3.382832 CGGGTCTCTGAAGGCGGT 61.383 66.667 0.00 0.00 0.00 5.68
4980 7520 4.821589 GCGGGTCTCTGAAGGCGG 62.822 72.222 0.00 0.00 0.00 6.13
4982 7522 2.781595 TTTCGCGGGTCTCTGAAGGC 62.782 60.000 6.13 0.00 0.00 4.35
4983 7523 0.108138 ATTTCGCGGGTCTCTGAAGG 60.108 55.000 6.13 0.00 0.00 3.46
4984 7524 1.002366 CATTTCGCGGGTCTCTGAAG 58.998 55.000 6.13 0.00 0.00 3.02
4985 7525 0.606096 TCATTTCGCGGGTCTCTGAA 59.394 50.000 6.13 0.00 0.00 3.02
4986 7526 0.606096 TTCATTTCGCGGGTCTCTGA 59.394 50.000 6.13 0.00 0.00 3.27
4987 7527 1.002366 CTTCATTTCGCGGGTCTCTG 58.998 55.000 6.13 0.00 0.00 3.35
4988 7528 0.608640 ACTTCATTTCGCGGGTCTCT 59.391 50.000 6.13 0.00 0.00 3.10
4989 7529 1.128692 CAACTTCATTTCGCGGGTCTC 59.871 52.381 6.13 0.00 0.00 3.36
4990 7530 1.156736 CAACTTCATTTCGCGGGTCT 58.843 50.000 6.13 0.00 0.00 3.85
4991 7531 0.872388 ACAACTTCATTTCGCGGGTC 59.128 50.000 6.13 0.00 0.00 4.46
4992 7532 1.314730 AACAACTTCATTTCGCGGGT 58.685 45.000 6.13 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.