Multiple sequence alignment - TraesCS6A01G208800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G208800 chr6A 100.000 4342 0 0 1 4342 377177296 377181637 0.000000e+00 8019.0
1 TraesCS6A01G208800 chr6A 95.050 303 14 1 3866 4167 181909849 181910151 3.930000e-130 475.0
2 TraesCS6A01G208800 chr6B 94.364 3194 114 29 689 3854 413643701 413646856 0.000000e+00 4841.0
3 TraesCS6A01G208800 chr6B 91.930 285 11 6 289 573 413643423 413643695 5.270000e-104 388.0
4 TraesCS6A01G208800 chr6B 85.942 313 34 5 2 305 413640948 413641259 4.190000e-85 326.0
5 TraesCS6A01G208800 chr6B 95.706 163 7 0 4180 4342 413646859 413647021 3.330000e-66 263.0
6 TraesCS6A01G208800 chr6D 95.997 2573 80 15 1303 3869 266251695 266254250 0.000000e+00 4159.0
7 TraesCS6A01G208800 chr6D 94.558 588 13 5 689 1265 266251114 266251693 0.000000e+00 891.0
8 TraesCS6A01G208800 chr6D 86.626 329 13 10 256 573 266250800 266251108 6.960000e-88 335.0
9 TraesCS6A01G208800 chr6D 96.067 178 6 1 4166 4342 266254227 266254404 5.490000e-74 289.0
10 TraesCS6A01G208800 chr6D 92.308 117 9 0 572 688 282568097 282567981 2.690000e-37 167.0
11 TraesCS6A01G208800 chr6D 92.308 117 9 0 572 688 345490419 345490303 2.690000e-37 167.0
12 TraesCS6A01G208800 chr2A 95.066 304 13 2 3866 4167 497439077 497438774 1.090000e-130 477.0
13 TraesCS6A01G208800 chr2A 94.444 306 16 1 3863 4167 155766466 155766771 1.830000e-128 470.0
14 TraesCS6A01G208800 chr7A 94.481 308 15 2 3862 4167 144653739 144653432 1.410000e-129 473.0
15 TraesCS6A01G208800 chr7A 94.175 309 16 2 3861 4167 727101272 727101580 1.830000e-128 470.0
16 TraesCS6A01G208800 chr7A 92.812 320 20 3 3851 4167 116601422 116601103 1.100000e-125 460.0
17 TraesCS6A01G208800 chr5A 93.458 321 17 4 3849 4167 683947292 683946974 1.410000e-129 473.0
18 TraesCS6A01G208800 chr3B 94.737 304 15 1 3865 4167 47745444 47745141 5.080000e-129 472.0
19 TraesCS6A01G208800 chr3B 94.408 304 15 2 3866 4167 766049401 766049704 2.360000e-127 466.0
20 TraesCS6A01G208800 chr4A 93.162 117 8 0 572 688 150130531 150130415 5.770000e-39 172.0
21 TraesCS6A01G208800 chr3D 92.437 119 9 0 572 690 540108377 540108259 2.080000e-38 171.0
22 TraesCS6A01G208800 chr3D 91.129 124 9 1 567 688 507959259 507959382 2.690000e-37 167.0
23 TraesCS6A01G208800 chr4B 92.308 117 9 0 572 688 588786869 588786985 2.690000e-37 167.0
24 TraesCS6A01G208800 chr4B 91.176 68 6 0 23 90 387336820 387336753 4.620000e-15 93.5
25 TraesCS6A01G208800 chr4B 89.552 67 7 0 23 89 387336582 387336516 7.740000e-13 86.1
26 TraesCS6A01G208800 chr1D 92.308 117 9 0 572 688 270900887 270901003 2.690000e-37 167.0
27 TraesCS6A01G208800 chr1A 89.231 130 13 1 559 688 301317302 301317430 1.250000e-35 161.0
28 TraesCS6A01G208800 chr3A 88.636 132 13 1 560 689 599707999 599708130 4.490000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G208800 chr6A 377177296 377181637 4341 False 8019.0 8019 100.0000 1 4342 1 chr6A.!!$F2 4341
1 TraesCS6A01G208800 chr6B 413640948 413647021 6073 False 1454.5 4841 91.9855 2 4342 4 chr6B.!!$F1 4340
2 TraesCS6A01G208800 chr6D 266250800 266254404 3604 False 1418.5 4159 93.3120 256 4342 4 chr6D.!!$F1 4086

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
118 121 0.106469 GAAAAGCCCTCATCTCCCCC 60.106 60.0 0.00 0.00 0.00 5.40 F
148 151 0.108804 TCGCGAGGACTAAAAGCCTG 60.109 55.0 3.71 0.00 33.84 4.85 F
653 2852 0.110295 CCCACATGTCAGTGACCCAA 59.890 55.0 20.43 2.34 42.05 4.12 F
659 2858 0.179020 TGTCAGTGACCCAAAGGCAG 60.179 55.0 20.43 0.00 36.11 4.85 F
1401 3616 0.378962 TTTGTGTTCGCGGTTGGAAG 59.621 50.0 6.13 0.00 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1124 3334 1.079503 AGAAAGAAGCGCGGAATCAC 58.920 50.000 8.83 0.0 0.00 3.06 R
1139 3349 1.371183 CACGGACCTGGAGCAGAAA 59.629 57.895 0.00 0.0 32.44 2.52 R
2172 4393 1.566211 CCTTGAGGAGCTTGAGGAGA 58.434 55.000 0.00 0.0 37.39 3.71 R
2580 4801 2.383527 CGCGAGCAGTTTCTCCACC 61.384 63.158 0.00 0.0 0.00 4.61 R
3347 5574 1.112113 GCTGGCTGCTAGTGGTACTA 58.888 55.000 14.66 0.0 38.95 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.536570 TCAATATTGATTCCGCAACGGA 58.463 40.909 14.23 4.26 42.63 4.69
23 24 4.921736 TCAATATTGATTCCGCAACGGACT 60.922 41.667 14.23 3.00 43.41 3.85
36 37 3.688086 GGACTCACTCCGCTCACT 58.312 61.111 0.00 0.00 0.00 3.41
37 38 1.509004 GGACTCACTCCGCTCACTC 59.491 63.158 0.00 0.00 0.00 3.51
38 39 1.135731 GACTCACTCCGCTCACTCG 59.864 63.158 0.00 0.00 0.00 4.18
42 45 1.154131 CACTCCGCTCACTCGTCAG 60.154 63.158 0.00 0.00 0.00 3.51
56 59 4.918583 CACTCGTCAGAAGTTAGTCTTTCC 59.081 45.833 0.00 0.00 36.40 3.13
64 67 9.368674 GTCAGAAGTTAGTCTTTCCCTTTATAC 57.631 37.037 0.00 0.00 36.40 1.47
118 121 0.106469 GAAAAGCCCTCATCTCCCCC 60.106 60.000 0.00 0.00 0.00 5.40
121 124 2.040464 GCCCTCATCTCCCCCAGA 60.040 66.667 0.00 0.00 34.78 3.86
124 127 2.146061 CCTCATCTCCCCCAGAGCC 61.146 68.421 0.00 0.00 42.90 4.70
148 151 0.108804 TCGCGAGGACTAAAAGCCTG 60.109 55.000 3.71 0.00 33.84 4.85
164 167 6.808321 AAAGCCTGACTTATGTACTATCCA 57.192 37.500 0.00 0.00 37.75 3.41
168 171 6.784969 AGCCTGACTTATGTACTATCCAGAAT 59.215 38.462 0.00 0.00 0.00 2.40
174 177 4.792521 ATGTACTATCCAGAATCGAGGC 57.207 45.455 0.00 0.00 0.00 4.70
180 183 2.178890 CCAGAATCGAGGCAGCAGC 61.179 63.158 0.00 0.00 41.10 5.25
181 184 2.202851 AGAATCGAGGCAGCAGCG 60.203 61.111 0.00 0.00 43.41 5.18
182 185 2.510238 GAATCGAGGCAGCAGCGT 60.510 61.111 0.00 0.00 43.41 5.07
191 201 1.065854 AGGCAGCAGCGTAGAAATTCT 60.066 47.619 0.00 0.00 43.41 2.40
205 215 6.201044 CGTAGAAATTCTTGTGACTCAACAGT 59.799 38.462 0.00 0.00 34.57 3.55
206 216 6.369059 AGAAATTCTTGTGACTCAACAGTG 57.631 37.500 0.00 0.00 30.63 3.66
214 224 3.258372 TGTGACTCAACAGTGGACCTATC 59.742 47.826 0.00 0.00 30.63 2.08
217 227 4.593206 TGACTCAACAGTGGACCTATCTTT 59.407 41.667 0.00 0.00 30.63 2.52
250 260 4.523083 TCCATTGTAATGTTCACCTAGCC 58.477 43.478 4.12 0.00 34.60 3.93
294 304 7.435068 AAACCTTTTGTATGTAGCAGTAGTG 57.565 36.000 0.00 0.00 0.00 2.74
296 306 5.012768 ACCTTTTGTATGTAGCAGTAGTGGT 59.987 40.000 7.52 7.52 38.25 4.16
337 2525 7.468084 GCCGGAATTATTAGCTGTTTTATGACA 60.468 37.037 5.05 0.00 0.00 3.58
357 2545 3.002791 CAAAGAAGGCGCATCAAGTAGA 58.997 45.455 10.83 0.00 0.00 2.59
409 2607 2.040464 ATCCTGCCCGTGATCCCT 60.040 61.111 0.00 0.00 0.00 4.20
453 2652 3.152341 CCCATTTCTCTTGACTTGTGCT 58.848 45.455 0.00 0.00 0.00 4.40
454 2653 3.057736 CCCATTTCTCTTGACTTGTGCTG 60.058 47.826 0.00 0.00 0.00 4.41
455 2654 3.562505 CATTTCTCTTGACTTGTGCTGC 58.437 45.455 0.00 0.00 0.00 5.25
456 2655 2.330440 TTCTCTTGACTTGTGCTGCA 57.670 45.000 0.00 0.00 0.00 4.41
457 2656 2.556144 TCTCTTGACTTGTGCTGCAT 57.444 45.000 5.27 0.00 0.00 3.96
458 2657 2.420642 TCTCTTGACTTGTGCTGCATC 58.579 47.619 5.27 0.00 0.00 3.91
459 2658 2.038164 TCTCTTGACTTGTGCTGCATCT 59.962 45.455 5.27 0.00 0.00 2.90
460 2659 2.148768 TCTTGACTTGTGCTGCATCTG 58.851 47.619 5.27 1.30 0.00 2.90
461 2660 0.594602 TTGACTTGTGCTGCATCTGC 59.405 50.000 5.27 0.00 42.50 4.26
494 2693 2.307098 CCTCTCTGGTCCCTGTTTTCAT 59.693 50.000 0.00 0.00 0.00 2.57
514 2713 1.131303 ATGTCCACCTCCAACCCGAA 61.131 55.000 0.00 0.00 0.00 4.30
573 2772 3.733443 AAGTTCACCAAAATGGACTGC 57.267 42.857 2.85 0.00 37.45 4.40
574 2773 2.949447 AGTTCACCAAAATGGACTGCT 58.051 42.857 2.85 0.00 40.96 4.24
575 2774 3.299503 AGTTCACCAAAATGGACTGCTT 58.700 40.909 2.85 0.00 40.96 3.91
576 2775 3.319122 AGTTCACCAAAATGGACTGCTTC 59.681 43.478 2.85 0.00 40.96 3.86
577 2776 1.879380 TCACCAAAATGGACTGCTTCG 59.121 47.619 2.85 0.00 40.96 3.79
578 2777 1.068333 CACCAAAATGGACTGCTTCGG 60.068 52.381 2.85 0.00 40.96 4.30
579 2778 1.247567 CCAAAATGGACTGCTTCGGT 58.752 50.000 0.00 0.00 40.96 4.69
580 2779 1.068333 CCAAAATGGACTGCTTCGGTG 60.068 52.381 0.00 0.00 40.96 4.94
581 2780 0.598065 AAAATGGACTGCTTCGGTGC 59.402 50.000 0.00 0.00 0.00 5.01
582 2781 1.244019 AAATGGACTGCTTCGGTGCC 61.244 55.000 0.00 0.00 29.85 5.01
583 2782 2.129555 AATGGACTGCTTCGGTGCCT 62.130 55.000 0.00 0.00 29.85 4.75
584 2783 2.032681 GGACTGCTTCGGTGCCTT 59.967 61.111 0.00 0.00 0.00 4.35
585 2784 1.295423 GGACTGCTTCGGTGCCTTA 59.705 57.895 0.00 0.00 0.00 2.69
586 2785 0.321298 GGACTGCTTCGGTGCCTTAA 60.321 55.000 0.00 0.00 0.00 1.85
587 2786 1.079503 GACTGCTTCGGTGCCTTAAG 58.920 55.000 0.00 0.00 0.00 1.85
588 2787 0.321653 ACTGCTTCGGTGCCTTAAGG 60.322 55.000 17.81 17.81 38.53 2.69
608 2807 5.552870 AGGCACCTACCTTTATGTCTATG 57.447 43.478 0.00 0.00 36.28 2.23
609 2808 5.216622 AGGCACCTACCTTTATGTCTATGA 58.783 41.667 0.00 0.00 36.28 2.15
610 2809 5.846714 AGGCACCTACCTTTATGTCTATGAT 59.153 40.000 0.00 0.00 36.28 2.45
611 2810 7.016914 AGGCACCTACCTTTATGTCTATGATA 58.983 38.462 0.00 0.00 36.28 2.15
612 2811 7.680310 AGGCACCTACCTTTATGTCTATGATAT 59.320 37.037 0.00 0.00 36.28 1.63
613 2812 7.766278 GGCACCTACCTTTATGTCTATGATATG 59.234 40.741 0.00 0.00 0.00 1.78
614 2813 8.314751 GCACCTACCTTTATGTCTATGATATGT 58.685 37.037 0.00 0.00 0.00 2.29
615 2814 9.645059 CACCTACCTTTATGTCTATGATATGTG 57.355 37.037 0.00 0.00 0.00 3.21
616 2815 9.601810 ACCTACCTTTATGTCTATGATATGTGA 57.398 33.333 0.00 0.00 0.00 3.58
620 2819 8.938883 ACCTTTATGTCTATGATATGTGAACCT 58.061 33.333 0.00 0.00 0.00 3.50
626 2825 8.533569 TGTCTATGATATGTGAACCTAACAGA 57.466 34.615 0.00 0.00 0.00 3.41
627 2826 9.147732 TGTCTATGATATGTGAACCTAACAGAT 57.852 33.333 0.00 0.00 32.37 2.90
628 2827 9.416794 GTCTATGATATGTGAACCTAACAGATG 57.583 37.037 0.00 0.00 29.94 2.90
629 2828 8.588472 TCTATGATATGTGAACCTAACAGATGG 58.412 37.037 0.00 0.00 29.94 3.51
630 2829 6.560003 TGATATGTGAACCTAACAGATGGT 57.440 37.500 0.00 0.00 38.35 3.55
631 2830 6.957631 TGATATGTGAACCTAACAGATGGTT 58.042 36.000 0.00 0.00 43.62 3.67
632 2831 6.823182 TGATATGTGAACCTAACAGATGGTTG 59.177 38.462 1.88 0.00 40.73 3.77
633 2832 4.698201 TGTGAACCTAACAGATGGTTGA 57.302 40.909 1.88 0.00 40.73 3.18
634 2833 4.385825 TGTGAACCTAACAGATGGTTGAC 58.614 43.478 7.37 7.37 40.73 3.18
635 2834 3.751698 GTGAACCTAACAGATGGTTGACC 59.248 47.826 1.88 0.00 40.73 4.02
636 2835 3.244770 TGAACCTAACAGATGGTTGACCC 60.245 47.826 1.88 0.00 40.73 4.46
645 2844 3.723772 TGGTTGACCCACATGTCAG 57.276 52.632 0.00 0.00 45.37 3.51
646 2845 0.843309 TGGTTGACCCACATGTCAGT 59.157 50.000 0.00 0.00 45.37 3.41
647 2846 1.238439 GGTTGACCCACATGTCAGTG 58.762 55.000 0.00 0.00 45.37 3.66
648 2847 1.202758 GGTTGACCCACATGTCAGTGA 60.203 52.381 0.00 0.00 45.37 3.41
649 2848 1.873591 GTTGACCCACATGTCAGTGAC 59.126 52.381 16.68 16.68 45.37 3.67
650 2849 0.396435 TGACCCACATGTCAGTGACC 59.604 55.000 20.43 3.06 40.22 4.02
651 2850 0.321653 GACCCACATGTCAGTGACCC 60.322 60.000 20.43 0.00 42.05 4.46
652 2851 1.059584 ACCCACATGTCAGTGACCCA 61.060 55.000 20.43 3.20 42.05 4.51
653 2852 0.110295 CCCACATGTCAGTGACCCAA 59.890 55.000 20.43 2.34 42.05 4.12
654 2853 1.478471 CCCACATGTCAGTGACCCAAA 60.478 52.381 20.43 1.95 42.05 3.28
655 2854 1.881973 CCACATGTCAGTGACCCAAAG 59.118 52.381 20.43 8.14 42.05 2.77
656 2855 1.881973 CACATGTCAGTGACCCAAAGG 59.118 52.381 20.43 6.15 42.05 3.11
657 2856 0.883833 CATGTCAGTGACCCAAAGGC 59.116 55.000 20.43 0.00 36.11 4.35
658 2857 0.478072 ATGTCAGTGACCCAAAGGCA 59.522 50.000 20.43 0.00 36.11 4.75
659 2858 0.179020 TGTCAGTGACCCAAAGGCAG 60.179 55.000 20.43 0.00 36.11 4.85
660 2859 0.890996 GTCAGTGACCCAAAGGCAGG 60.891 60.000 12.54 0.00 36.11 4.85
661 2860 1.151450 CAGTGACCCAAAGGCAGGT 59.849 57.895 0.00 0.00 39.75 4.00
662 2861 1.151450 AGTGACCCAAAGGCAGGTG 59.849 57.895 0.00 0.00 36.17 4.00
663 2862 2.203480 TGACCCAAAGGCAGGTGC 60.203 61.111 0.00 0.00 36.17 5.01
680 2879 3.267974 CCTTCAAGGCACCGAAGC 58.732 61.111 0.00 0.00 37.14 3.86
681 2880 1.302832 CCTTCAAGGCACCGAAGCT 60.303 57.895 0.00 0.00 37.14 3.74
682 2881 1.580845 CCTTCAAGGCACCGAAGCTG 61.581 60.000 0.00 0.00 37.14 4.24
683 2882 2.192608 CTTCAAGGCACCGAAGCTGC 62.193 60.000 0.00 0.00 32.83 5.25
684 2883 4.093952 CAAGGCACCGAAGCTGCG 62.094 66.667 7.28 7.28 35.31 5.18
685 2884 4.626081 AAGGCACCGAAGCTGCGT 62.626 61.111 14.34 0.00 35.31 5.24
804 3007 1.475930 GCTAGTGAATCTGGGGAAGGC 60.476 57.143 0.00 0.00 0.00 4.35
848 3051 2.287393 TGCTTGTGCATGCATGAATC 57.713 45.000 30.64 17.91 45.31 2.52
849 3052 1.546476 TGCTTGTGCATGCATGAATCA 59.454 42.857 30.64 20.11 45.31 2.57
850 3053 2.167487 TGCTTGTGCATGCATGAATCAT 59.833 40.909 30.64 0.00 45.31 2.45
851 3054 2.539688 GCTTGTGCATGCATGAATCATG 59.460 45.455 30.64 22.74 43.02 3.07
957 3164 2.750350 CAACCAACCTCCTCCGCT 59.250 61.111 0.00 0.00 0.00 5.52
1040 3250 2.750350 CAGGCCCGACACCTTCTT 59.250 61.111 0.00 0.00 34.42 2.52
1087 3297 2.279451 TGATCCTCATTCCGCGCG 60.279 61.111 25.67 25.67 0.00 6.86
1101 3311 0.593518 CGCGCGATCTCTGTCAGATT 60.594 55.000 28.94 0.00 42.48 2.40
1268 3478 5.662208 ACCAGATTCATTCATGTCTCTCTCT 59.338 40.000 0.00 0.00 0.00 3.10
1269 3479 6.183360 ACCAGATTCATTCATGTCTCTCTCTC 60.183 42.308 0.00 0.00 0.00 3.20
1270 3480 6.041182 CCAGATTCATTCATGTCTCTCTCTCT 59.959 42.308 0.00 0.00 0.00 3.10
1271 3481 7.143340 CAGATTCATTCATGTCTCTCTCTCTC 58.857 42.308 0.00 0.00 0.00 3.20
1272 3482 7.013942 CAGATTCATTCATGTCTCTCTCTCTCT 59.986 40.741 0.00 0.00 0.00 3.10
1273 3483 6.698008 TTCATTCATGTCTCTCTCTCTCTC 57.302 41.667 0.00 0.00 0.00 3.20
1332 3544 1.918609 GTTACGATCGCAACCTCTGAC 59.081 52.381 18.53 0.00 0.00 3.51
1350 3562 7.123547 ACCTCTGACTGTTTCTCTAATCTTAGG 59.876 40.741 0.00 0.00 0.00 2.69
1401 3616 0.378962 TTTGTGTTCGCGGTTGGAAG 59.621 50.000 6.13 0.00 0.00 3.46
1740 3961 4.821589 CTCCGCCGCTGGAAGGAC 62.822 72.222 5.63 0.00 37.64 3.85
1950 4171 2.534019 GCGTATCATGGTGGCCGTG 61.534 63.158 0.00 1.13 41.56 4.94
2274 4495 4.504916 CTCGAGGAGGCCAGCGTG 62.505 72.222 5.01 0.00 0.00 5.34
2310 4531 1.357258 CGTCAGTGTCCTGCATGAGC 61.357 60.000 0.00 0.00 38.66 4.26
2361 4582 1.215382 CATCCTCCACGAGTTCGCA 59.785 57.895 0.73 0.00 44.43 5.10
2542 4763 2.203922 TGGGCAGGCTAGTGGACA 60.204 61.111 0.00 0.00 0.00 4.02
2580 4801 3.411517 AAGGATCCCCACCTGCCG 61.412 66.667 8.55 0.00 37.85 5.69
2670 4891 0.795085 AAGTCGTCGACTCGTACCTG 59.205 55.000 27.11 0.00 42.59 4.00
2748 4974 6.313744 ACTTGGAAGTTGGATAGTTTTTCG 57.686 37.500 0.00 0.00 35.21 3.46
2778 5004 5.885230 TGCATAAACAATGGAGAGTTCTG 57.115 39.130 0.00 0.00 35.99 3.02
2784 5010 5.495926 AACAATGGAGAGTTCTGATCTGT 57.504 39.130 0.00 0.00 0.00 3.41
3188 5415 1.475403 TGAAGATGGAGGAGGACGAC 58.525 55.000 0.00 0.00 0.00 4.34
3270 5497 2.106938 CCTTCTGCGCTATGCCGA 59.893 61.111 9.73 0.00 45.60 5.54
3321 5548 4.722700 GGCCGCTGGGAAGAAGCA 62.723 66.667 0.00 0.00 40.86 3.91
3324 5551 1.078214 CCGCTGGGAAGAAGCATCA 60.078 57.895 0.00 0.00 40.86 3.07
3346 5573 2.511373 CGACCGGCATTAGCAGCA 60.511 61.111 0.00 0.00 44.61 4.41
3347 5574 1.889105 CGACCGGCATTAGCAGCAT 60.889 57.895 0.00 0.00 44.61 3.79
3535 5762 8.368668 GGAACTGCACAGGTTACTTCTATATAT 58.631 37.037 2.21 0.00 0.00 0.86
3632 5865 0.869880 GGCAACGCCTGACAAAACAC 60.870 55.000 0.00 0.00 46.69 3.32
3645 5878 5.241662 TGACAAAACACGGTCATGATGATA 58.758 37.500 0.00 0.00 39.00 2.15
3724 5957 4.142816 CCAAGCACTATCTTCTTTTCCGTG 60.143 45.833 0.00 0.00 0.00 4.94
3727 5960 4.021016 AGCACTATCTTCTTTTCCGTGTCT 60.021 41.667 0.00 0.00 0.00 3.41
3801 6034 3.282021 CAAGGACAGAGAGAGAGAGAGG 58.718 54.545 0.00 0.00 0.00 3.69
3821 6054 2.371179 GGGAGAGATGAGCATGGATGAA 59.629 50.000 0.00 0.00 0.00 2.57
3838 6071 4.380550 GGATGAAAAATTCCACGGGAGAAC 60.381 45.833 0.00 0.00 31.21 3.01
3859 6094 7.671302 AGAACAATGCACCGAAGATATAGTAT 58.329 34.615 0.00 0.00 0.00 2.12
3860 6095 8.803235 AGAACAATGCACCGAAGATATAGTATA 58.197 33.333 0.00 0.00 0.00 1.47
3861 6096 9.419297 GAACAATGCACCGAAGATATAGTATAA 57.581 33.333 0.00 0.00 0.00 0.98
3862 6097 9.944376 AACAATGCACCGAAGATATAGTATAAT 57.056 29.630 0.00 0.00 0.00 1.28
3892 6127 6.785488 TTTTAGCATCAGTACAGACACAAG 57.215 37.500 0.00 0.00 0.00 3.16
3893 6128 2.693069 AGCATCAGTACAGACACAAGC 58.307 47.619 0.00 0.00 0.00 4.01
3894 6129 1.391485 GCATCAGTACAGACACAAGCG 59.609 52.381 0.00 0.00 0.00 4.68
3895 6130 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
3896 6131 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
3897 6132 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
3898 6133 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
3899 6134 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
3900 6135 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
3901 6136 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
3902 6137 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
3903 6138 4.327982 ACAGACACAAGCGCTCATATAT 57.672 40.909 12.06 0.00 0.00 0.86
3904 6139 5.453567 ACAGACACAAGCGCTCATATATA 57.546 39.130 12.06 0.00 0.00 0.86
3905 6140 5.223382 ACAGACACAAGCGCTCATATATAC 58.777 41.667 12.06 0.00 0.00 1.47
3906 6141 4.322009 CAGACACAAGCGCTCATATATACG 59.678 45.833 12.06 0.00 0.00 3.06
3914 6149 3.359654 CGCTCATATATACGCGCATACA 58.640 45.455 5.73 0.00 39.11 2.29
3915 6150 3.975035 CGCTCATATATACGCGCATACAT 59.025 43.478 5.73 0.00 39.11 2.29
3916 6151 4.441087 CGCTCATATATACGCGCATACATT 59.559 41.667 5.73 0.00 39.11 2.71
3917 6152 5.386424 CGCTCATATATACGCGCATACATTC 60.386 44.000 5.73 0.00 39.11 2.67
3918 6153 5.458779 GCTCATATATACGCGCATACATTCA 59.541 40.000 5.73 0.00 0.00 2.57
3919 6154 6.560433 GCTCATATATACGCGCATACATTCAC 60.560 42.308 5.73 0.00 0.00 3.18
3920 6155 5.746721 TCATATATACGCGCATACATTCACC 59.253 40.000 5.73 0.00 0.00 4.02
3921 6156 1.508632 ATACGCGCATACATTCACCC 58.491 50.000 5.73 0.00 0.00 4.61
3922 6157 0.531090 TACGCGCATACATTCACCCC 60.531 55.000 5.73 0.00 0.00 4.95
3923 6158 1.523711 CGCGCATACATTCACCCCT 60.524 57.895 8.75 0.00 0.00 4.79
3924 6159 0.249699 CGCGCATACATTCACCCCTA 60.250 55.000 8.75 0.00 0.00 3.53
3925 6160 1.608025 CGCGCATACATTCACCCCTAT 60.608 52.381 8.75 0.00 0.00 2.57
3926 6161 1.806542 GCGCATACATTCACCCCTATG 59.193 52.381 0.30 0.00 0.00 2.23
3927 6162 2.549992 GCGCATACATTCACCCCTATGA 60.550 50.000 0.30 0.00 0.00 2.15
3928 6163 3.738982 CGCATACATTCACCCCTATGAA 58.261 45.455 0.00 0.00 42.62 2.57
3929 6164 3.498397 CGCATACATTCACCCCTATGAAC 59.502 47.826 0.00 0.00 41.29 3.18
3930 6165 3.498397 GCATACATTCACCCCTATGAACG 59.502 47.826 0.00 0.00 41.29 3.95
3931 6166 2.038387 ACATTCACCCCTATGAACGC 57.962 50.000 0.00 0.00 41.29 4.84
3932 6167 1.280710 ACATTCACCCCTATGAACGCA 59.719 47.619 0.00 0.00 41.29 5.24
3933 6168 1.670811 CATTCACCCCTATGAACGCAC 59.329 52.381 0.00 0.00 41.29 5.34
3934 6169 0.390603 TTCACCCCTATGAACGCACG 60.391 55.000 0.00 0.00 33.62 5.34
3935 6170 2.125269 ACCCCTATGAACGCACGC 60.125 61.111 0.00 0.00 0.00 5.34
3936 6171 2.125310 CCCCTATGAACGCACGCA 60.125 61.111 0.00 0.00 0.00 5.24
3937 6172 2.461110 CCCCTATGAACGCACGCAC 61.461 63.158 0.00 0.00 0.00 5.34
3938 6173 2.695055 CCTATGAACGCACGCACG 59.305 61.111 0.00 0.00 39.50 5.34
3939 6174 2.020016 CTATGAACGCACGCACGC 59.980 61.111 0.00 0.00 36.19 5.34
3940 6175 2.725699 CTATGAACGCACGCACGCA 61.726 57.895 0.00 0.00 36.19 5.24
3941 6176 2.863655 CTATGAACGCACGCACGCAC 62.864 60.000 0.00 0.00 36.19 5.34
3948 6183 3.411351 CACGCACGCACACCCTAC 61.411 66.667 0.00 0.00 0.00 3.18
3949 6184 4.675029 ACGCACGCACACCCTACC 62.675 66.667 0.00 0.00 0.00 3.18
3950 6185 4.373116 CGCACGCACACCCTACCT 62.373 66.667 0.00 0.00 0.00 3.08
3951 6186 2.434359 GCACGCACACCCTACCTC 60.434 66.667 0.00 0.00 0.00 3.85
3952 6187 2.943978 GCACGCACACCCTACCTCT 61.944 63.158 0.00 0.00 0.00 3.69
3953 6188 1.601419 GCACGCACACCCTACCTCTA 61.601 60.000 0.00 0.00 0.00 2.43
3954 6189 1.112113 CACGCACACCCTACCTCTAT 58.888 55.000 0.00 0.00 0.00 1.98
3955 6190 1.112113 ACGCACACCCTACCTCTATG 58.888 55.000 0.00 0.00 0.00 2.23
3956 6191 1.341679 ACGCACACCCTACCTCTATGA 60.342 52.381 0.00 0.00 0.00 2.15
3957 6192 1.338337 CGCACACCCTACCTCTATGAG 59.662 57.143 0.00 0.00 0.00 2.90
3958 6193 1.069358 GCACACCCTACCTCTATGAGC 59.931 57.143 0.00 0.00 0.00 4.26
3959 6194 2.388735 CACACCCTACCTCTATGAGCA 58.611 52.381 0.00 0.00 0.00 4.26
3960 6195 2.968574 CACACCCTACCTCTATGAGCAT 59.031 50.000 0.00 0.00 0.00 3.79
3961 6196 3.006323 CACACCCTACCTCTATGAGCATC 59.994 52.174 0.00 0.00 0.00 3.91
3962 6197 3.116939 ACACCCTACCTCTATGAGCATCT 60.117 47.826 0.00 0.00 34.92 2.90
3963 6198 3.900601 CACCCTACCTCTATGAGCATCTT 59.099 47.826 0.00 0.00 34.92 2.40
3964 6199 4.021544 CACCCTACCTCTATGAGCATCTTC 60.022 50.000 0.00 0.00 34.92 2.87
3965 6200 3.192422 CCCTACCTCTATGAGCATCTTCG 59.808 52.174 0.00 0.00 34.92 3.79
3966 6201 4.075682 CCTACCTCTATGAGCATCTTCGA 58.924 47.826 0.00 0.00 34.92 3.71
3967 6202 4.155826 CCTACCTCTATGAGCATCTTCGAG 59.844 50.000 0.00 0.00 33.58 4.04
3968 6203 3.826524 ACCTCTATGAGCATCTTCGAGA 58.173 45.455 0.00 0.00 35.08 4.04
3969 6204 3.820467 ACCTCTATGAGCATCTTCGAGAG 59.180 47.826 0.00 0.00 35.08 3.20
3970 6205 4.071423 CCTCTATGAGCATCTTCGAGAGA 58.929 47.826 8.18 0.79 35.08 3.10
3971 6206 4.083324 CCTCTATGAGCATCTTCGAGAGAC 60.083 50.000 8.18 0.00 41.84 3.36
3972 6207 4.713553 TCTATGAGCATCTTCGAGAGACT 58.286 43.478 0.35 0.00 41.84 3.24
3973 6208 3.713858 ATGAGCATCTTCGAGAGACTG 57.286 47.619 0.35 2.81 41.84 3.51
3974 6209 2.716217 TGAGCATCTTCGAGAGACTGA 58.284 47.619 0.35 0.00 41.84 3.41
3975 6210 2.682352 TGAGCATCTTCGAGAGACTGAG 59.318 50.000 0.35 0.00 41.84 3.35
3976 6211 1.405105 AGCATCTTCGAGAGACTGAGC 59.595 52.381 0.35 0.00 41.84 4.26
3977 6212 1.535860 GCATCTTCGAGAGACTGAGCC 60.536 57.143 0.35 0.00 41.84 4.70
3978 6213 1.021202 ATCTTCGAGAGACTGAGCCG 58.979 55.000 0.35 0.00 41.84 5.52
3979 6214 1.027255 TCTTCGAGAGACTGAGCCGG 61.027 60.000 0.00 0.00 41.84 6.13
3980 6215 2.606155 CTTCGAGAGACTGAGCCGGC 62.606 65.000 21.89 21.89 41.84 6.13
3981 6216 3.443925 CGAGAGACTGAGCCGGCA 61.444 66.667 31.54 7.98 0.00 5.69
3982 6217 2.780094 CGAGAGACTGAGCCGGCAT 61.780 63.158 31.54 14.28 0.00 4.40
3983 6218 1.448119 CGAGAGACTGAGCCGGCATA 61.448 60.000 31.54 16.21 0.00 3.14
3984 6219 0.965439 GAGAGACTGAGCCGGCATAT 59.035 55.000 31.54 8.11 0.00 1.78
3985 6220 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
3986 6221 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
3987 6222 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
3988 6223 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
3989 6224 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
3990 6225 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
3991 6226 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
3992 6227 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
3993 6228 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
3994 6229 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
3995 6230 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
3996 6231 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
3997 6232 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
3998 6233 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
3999 6234 5.163814 GCCGGCATATCATCTTGAGATTTAC 60.164 44.000 24.80 0.00 31.21 2.01
4000 6235 5.062683 CCGGCATATCATCTTGAGATTTACG 59.937 44.000 0.00 0.00 31.21 3.18
4001 6236 5.863935 CGGCATATCATCTTGAGATTTACGA 59.136 40.000 0.00 0.00 31.21 3.43
4002 6237 6.366061 CGGCATATCATCTTGAGATTTACGAA 59.634 38.462 0.00 0.00 31.21 3.85
4003 6238 7.411264 CGGCATATCATCTTGAGATTTACGAAG 60.411 40.741 0.00 0.00 31.21 3.79
4004 6239 7.386299 GGCATATCATCTTGAGATTTACGAAGT 59.614 37.037 0.00 0.00 37.29 3.01
4005 6240 8.431593 GCATATCATCTTGAGATTTACGAAGTC 58.568 37.037 0.00 0.00 35.39 3.01
4006 6241 9.468532 CATATCATCTTGAGATTTACGAAGTCA 57.531 33.333 0.00 0.00 35.39 3.41
4007 6242 7.763172 ATCATCTTGAGATTTACGAAGTCAC 57.237 36.000 0.00 0.00 35.39 3.67
4008 6243 6.100004 TCATCTTGAGATTTACGAAGTCACC 58.900 40.000 0.00 0.00 35.39 4.02
4009 6244 4.482386 TCTTGAGATTTACGAAGTCACCG 58.518 43.478 0.00 0.00 43.93 4.94
4010 6245 3.928727 TGAGATTTACGAAGTCACCGT 57.071 42.857 0.00 0.00 43.93 4.83
4011 6246 5.181811 TCTTGAGATTTACGAAGTCACCGTA 59.818 40.000 0.00 0.00 43.93 4.02
4012 6247 4.978186 TGAGATTTACGAAGTCACCGTAG 58.022 43.478 0.00 0.00 43.93 3.51
4025 6260 4.883300 CGTAGGCGCCTCGTCGTC 62.883 72.222 36.73 15.88 36.23 4.20
4026 6261 4.883300 GTAGGCGCCTCGTCGTCG 62.883 72.222 36.73 0.00 39.34 5.12
4047 6282 4.688770 GGATCGTCTCCTCCCACT 57.311 61.111 0.32 0.00 41.29 4.00
4048 6283 2.119886 GGATCGTCTCCTCCCACTG 58.880 63.158 0.32 0.00 41.29 3.66
4049 6284 0.395862 GGATCGTCTCCTCCCACTGA 60.396 60.000 0.32 0.00 41.29 3.41
4050 6285 1.475403 GATCGTCTCCTCCCACTGAA 58.525 55.000 0.00 0.00 0.00 3.02
4051 6286 1.825474 GATCGTCTCCTCCCACTGAAA 59.175 52.381 0.00 0.00 0.00 2.69
4052 6287 1.257743 TCGTCTCCTCCCACTGAAAG 58.742 55.000 0.00 0.00 42.29 2.62
4053 6288 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.000 0.00 0.00 37.60 3.51
4054 6289 0.390472 GTCTCCTCCCACTGAAAGCG 60.390 60.000 0.00 0.00 37.60 4.68
4055 6290 1.743252 CTCCTCCCACTGAAAGCGC 60.743 63.158 0.00 0.00 37.60 5.92
4056 6291 2.032528 CCTCCCACTGAAAGCGCA 59.967 61.111 11.47 0.00 37.60 6.09
4057 6292 1.377725 CCTCCCACTGAAAGCGCAT 60.378 57.895 11.47 0.00 37.60 4.73
4058 6293 1.372087 CCTCCCACTGAAAGCGCATC 61.372 60.000 11.47 8.39 37.60 3.91
4059 6294 1.699656 CTCCCACTGAAAGCGCATCG 61.700 60.000 11.47 6.82 37.60 3.84
4070 6305 3.409856 CGCATCGCCGGAAATTCT 58.590 55.556 5.05 0.00 0.00 2.40
4071 6306 1.010797 CGCATCGCCGGAAATTCTG 60.011 57.895 5.05 0.00 0.00 3.02
4072 6307 1.428370 CGCATCGCCGGAAATTCTGA 61.428 55.000 5.05 0.00 0.00 3.27
4073 6308 0.732571 GCATCGCCGGAAATTCTGAA 59.267 50.000 5.05 0.00 0.00 3.02
4074 6309 1.132262 GCATCGCCGGAAATTCTGAAA 59.868 47.619 5.05 0.00 0.00 2.69
4075 6310 2.223572 GCATCGCCGGAAATTCTGAAAT 60.224 45.455 5.05 0.00 0.00 2.17
4076 6311 3.003275 GCATCGCCGGAAATTCTGAAATA 59.997 43.478 5.05 0.00 0.00 1.40
4077 6312 4.497340 GCATCGCCGGAAATTCTGAAATAA 60.497 41.667 5.05 0.00 0.00 1.40
4078 6313 4.609691 TCGCCGGAAATTCTGAAATAAC 57.390 40.909 5.05 0.00 0.00 1.89
4079 6314 4.258543 TCGCCGGAAATTCTGAAATAACT 58.741 39.130 5.05 0.00 0.00 2.24
4080 6315 4.698304 TCGCCGGAAATTCTGAAATAACTT 59.302 37.500 5.05 0.00 0.00 2.66
4081 6316 5.028375 CGCCGGAAATTCTGAAATAACTTC 58.972 41.667 5.05 0.00 34.31 3.01
4082 6317 5.391523 CGCCGGAAATTCTGAAATAACTTCA 60.392 40.000 5.05 0.00 41.93 3.02
4096 6331 7.705325 TGAAATAACTTCAGGAATACTACGAGC 59.295 37.037 0.00 0.00 39.20 5.03
4097 6332 6.710597 ATAACTTCAGGAATACTACGAGCA 57.289 37.500 0.00 0.00 0.00 4.26
4098 6333 4.373348 ACTTCAGGAATACTACGAGCAC 57.627 45.455 0.00 0.00 0.00 4.40
4099 6334 3.130693 ACTTCAGGAATACTACGAGCACC 59.869 47.826 0.00 0.00 0.00 5.01
4100 6335 2.730382 TCAGGAATACTACGAGCACCA 58.270 47.619 0.00 0.00 0.00 4.17
4101 6336 2.688446 TCAGGAATACTACGAGCACCAG 59.312 50.000 0.00 0.00 0.00 4.00
4102 6337 2.032620 AGGAATACTACGAGCACCAGG 58.967 52.381 0.00 0.00 0.00 4.45
4103 6338 2.029623 GGAATACTACGAGCACCAGGA 58.970 52.381 0.00 0.00 0.00 3.86
4104 6339 2.628657 GGAATACTACGAGCACCAGGAT 59.371 50.000 0.00 0.00 0.00 3.24
4105 6340 3.069729 GGAATACTACGAGCACCAGGATT 59.930 47.826 0.00 0.00 0.00 3.01
4106 6341 4.443034 GGAATACTACGAGCACCAGGATTT 60.443 45.833 0.00 0.00 0.00 2.17
4107 6342 2.386661 ACTACGAGCACCAGGATTTG 57.613 50.000 0.00 0.00 0.00 2.32
4108 6343 1.899814 ACTACGAGCACCAGGATTTGA 59.100 47.619 0.00 0.00 0.00 2.69
4109 6344 2.301870 ACTACGAGCACCAGGATTTGAA 59.698 45.455 0.00 0.00 0.00 2.69
4110 6345 1.523758 ACGAGCACCAGGATTTGAAC 58.476 50.000 0.00 0.00 0.00 3.18
4111 6346 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
4112 6347 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
4113 6348 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
4118 6353 1.549203 CAGGATTTGAACCCTGGTGG 58.451 55.000 0.00 0.00 44.68 4.61
4128 6363 4.060065 CCTGGTGGGTTCGGGATA 57.940 61.111 0.00 0.00 32.49 2.59
4129 6364 1.525442 CCTGGTGGGTTCGGGATAC 59.475 63.158 0.00 0.00 32.49 2.24
4144 6379 3.538634 GGATACCACTGTCCACCTAAC 57.461 52.381 0.00 0.00 34.57 2.34
4145 6380 2.835764 GGATACCACTGTCCACCTAACA 59.164 50.000 0.00 0.00 34.57 2.41
4146 6381 3.262405 GGATACCACTGTCCACCTAACAA 59.738 47.826 0.00 0.00 34.57 2.83
4147 6382 2.632987 ACCACTGTCCACCTAACAAC 57.367 50.000 0.00 0.00 0.00 3.32
4148 6383 2.124411 ACCACTGTCCACCTAACAACT 58.876 47.619 0.00 0.00 0.00 3.16
4149 6384 2.104281 ACCACTGTCCACCTAACAACTC 59.896 50.000 0.00 0.00 0.00 3.01
4150 6385 2.104111 CCACTGTCCACCTAACAACTCA 59.896 50.000 0.00 0.00 0.00 3.41
4151 6386 3.433031 CCACTGTCCACCTAACAACTCAA 60.433 47.826 0.00 0.00 0.00 3.02
4152 6387 3.560068 CACTGTCCACCTAACAACTCAAC 59.440 47.826 0.00 0.00 0.00 3.18
4153 6388 3.139077 CTGTCCACCTAACAACTCAACC 58.861 50.000 0.00 0.00 0.00 3.77
4154 6389 2.506231 TGTCCACCTAACAACTCAACCA 59.494 45.455 0.00 0.00 0.00 3.67
4155 6390 2.876550 GTCCACCTAACAACTCAACCAC 59.123 50.000 0.00 0.00 0.00 4.16
4156 6391 2.506231 TCCACCTAACAACTCAACCACA 59.494 45.455 0.00 0.00 0.00 4.17
4157 6392 2.878406 CCACCTAACAACTCAACCACAG 59.122 50.000 0.00 0.00 0.00 3.66
4158 6393 2.878406 CACCTAACAACTCAACCACAGG 59.122 50.000 0.00 0.00 0.00 4.00
4159 6394 2.508300 ACCTAACAACTCAACCACAGGT 59.492 45.455 0.00 0.00 37.65 4.00
4171 6406 4.553330 AACCACAGGTTGATTCGTAGAT 57.447 40.909 0.00 0.00 45.07 1.98
4172 6407 5.670792 AACCACAGGTTGATTCGTAGATA 57.329 39.130 0.00 0.00 45.07 1.98
4173 6408 5.871396 ACCACAGGTTGATTCGTAGATAT 57.129 39.130 0.00 0.00 28.14 1.63
4174 6409 6.971726 ACCACAGGTTGATTCGTAGATATA 57.028 37.500 0.00 0.00 28.14 0.86
4175 6410 6.982852 ACCACAGGTTGATTCGTAGATATAG 58.017 40.000 0.00 0.00 28.14 1.31
4176 6411 6.550108 ACCACAGGTTGATTCGTAGATATAGT 59.450 38.462 0.00 0.00 28.14 2.12
4249 6484 0.533491 CGTGTGGAGGGTCCGAATAA 59.467 55.000 0.00 0.00 40.17 1.40
4289 6524 5.422214 TGATGATGATGGGATGATGAGAG 57.578 43.478 0.00 0.00 0.00 3.20
4307 6542 2.549332 GCTCACCTCAGCTCCAAAC 58.451 57.895 0.00 0.00 36.38 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.579084 GACGAGTGAGCGGAGTGAGT 61.579 60.000 0.00 0.00 35.12 3.41
23 24 1.578206 CTGACGAGTGAGCGGAGTGA 61.578 60.000 0.00 0.00 35.12 3.41
24 25 1.154131 CTGACGAGTGAGCGGAGTG 60.154 63.158 0.00 0.00 35.12 3.51
25 26 0.889638 TTCTGACGAGTGAGCGGAGT 60.890 55.000 0.00 0.00 35.12 3.85
26 27 0.179176 CTTCTGACGAGTGAGCGGAG 60.179 60.000 0.00 0.00 35.12 4.63
27 28 0.889638 ACTTCTGACGAGTGAGCGGA 60.890 55.000 0.00 0.00 35.12 5.54
28 29 0.039074 AACTTCTGACGAGTGAGCGG 60.039 55.000 0.00 0.00 35.12 5.52
30 31 3.189702 AGACTAACTTCTGACGAGTGAGC 59.810 47.826 0.00 0.00 29.97 4.26
31 32 5.365403 AAGACTAACTTCTGACGAGTGAG 57.635 43.478 0.00 0.00 32.91 3.51
32 33 5.278364 GGAAAGACTAACTTCTGACGAGTGA 60.278 44.000 0.00 0.00 37.93 3.41
33 34 4.918583 GGAAAGACTAACTTCTGACGAGTG 59.081 45.833 0.00 0.00 37.93 3.51
34 35 4.022155 GGGAAAGACTAACTTCTGACGAGT 60.022 45.833 0.00 0.00 37.93 4.18
35 36 4.218852 AGGGAAAGACTAACTTCTGACGAG 59.781 45.833 0.00 0.00 37.93 4.18
36 37 4.150359 AGGGAAAGACTAACTTCTGACGA 58.850 43.478 0.00 0.00 37.93 4.20
37 38 4.522722 AGGGAAAGACTAACTTCTGACG 57.477 45.455 0.00 0.00 37.93 4.35
38 39 9.368674 GTATAAAGGGAAAGACTAACTTCTGAC 57.631 37.037 0.00 0.00 37.93 3.51
42 45 9.939802 TCAAGTATAAAGGGAAAGACTAACTTC 57.060 33.333 0.00 0.00 37.93 3.01
73 76 9.791820 CATCTTCAAATTGTTATGTTATGCTCA 57.208 29.630 0.00 0.00 0.00 4.26
131 134 1.066787 AGTCAGGCTTTTAGTCCTCGC 60.067 52.381 0.00 0.00 0.00 5.03
132 135 3.320673 AAGTCAGGCTTTTAGTCCTCG 57.679 47.619 0.00 0.00 32.57 4.63
141 144 6.611642 TCTGGATAGTACATAAGTCAGGCTTT 59.388 38.462 0.00 0.00 38.57 3.51
148 151 7.531716 CCTCGATTCTGGATAGTACATAAGTC 58.468 42.308 0.00 0.00 0.00 3.01
164 167 1.667154 TACGCTGCTGCCTCGATTCT 61.667 55.000 15.60 0.00 35.36 2.40
168 171 1.873270 TTTCTACGCTGCTGCCTCGA 61.873 55.000 15.60 0.90 35.36 4.04
174 177 3.433274 TCACAAGAATTTCTACGCTGCTG 59.567 43.478 0.00 0.00 0.00 4.41
180 183 6.201044 ACTGTTGAGTCACAAGAATTTCTACG 59.799 38.462 8.00 0.00 39.30 3.51
181 184 7.348201 CACTGTTGAGTCACAAGAATTTCTAC 58.652 38.462 8.00 0.00 39.30 2.59
182 185 6.483307 CCACTGTTGAGTCACAAGAATTTCTA 59.517 38.462 8.00 0.00 39.30 2.10
191 201 1.837439 AGGTCCACTGTTGAGTCACAA 59.163 47.619 0.00 0.00 36.02 3.33
294 304 4.448210 TCCGGCTCAAAATCAATACTACC 58.552 43.478 0.00 0.00 0.00 3.18
296 306 8.918202 ATAATTCCGGCTCAAAATCAATACTA 57.082 30.769 0.00 0.00 0.00 1.82
337 2525 3.334583 TCTACTTGATGCGCCTTCTTT 57.665 42.857 4.18 0.00 0.00 2.52
389 2577 2.443394 GGATCACGGGCAGGATGGA 61.443 63.158 0.00 0.00 35.86 3.41
409 2607 1.406887 GGATCTTGCAGGTTTCGGCTA 60.407 52.381 0.00 0.00 35.13 3.93
454 2653 1.453762 GAGAGGGGCAATGCAGATGC 61.454 60.000 16.69 16.69 43.08 3.91
455 2654 0.822532 GGAGAGGGGCAATGCAGATG 60.823 60.000 7.79 0.00 0.00 2.90
456 2655 0.992431 AGGAGAGGGGCAATGCAGAT 60.992 55.000 7.79 0.00 0.00 2.90
457 2656 1.617536 AGGAGAGGGGCAATGCAGA 60.618 57.895 7.79 0.00 0.00 4.26
458 2657 1.153005 GAGGAGAGGGGCAATGCAG 60.153 63.158 7.79 0.00 0.00 4.41
459 2658 1.617536 AGAGGAGAGGGGCAATGCA 60.618 57.895 7.79 0.00 0.00 3.96
460 2659 1.148048 GAGAGGAGAGGGGCAATGC 59.852 63.158 0.00 0.00 0.00 3.56
461 2660 0.469070 CAGAGAGGAGAGGGGCAATG 59.531 60.000 0.00 0.00 0.00 2.82
462 2661 0.693767 CCAGAGAGGAGAGGGGCAAT 60.694 60.000 0.00 0.00 41.22 3.56
463 2662 1.306482 CCAGAGAGGAGAGGGGCAA 60.306 63.158 0.00 0.00 41.22 4.52
494 2693 0.252330 TCGGGTTGGAGGTGGACATA 60.252 55.000 0.00 0.00 0.00 2.29
514 2713 3.736433 CGCTCTTCAAATCGAGATGAGGT 60.736 47.826 14.14 0.00 37.60 3.85
586 2785 5.216622 TCATAGACATAAAGGTAGGTGCCT 58.783 41.667 0.00 0.00 41.41 4.75
587 2786 5.546621 TCATAGACATAAAGGTAGGTGCC 57.453 43.478 0.00 0.00 0.00 5.01
588 2787 8.314751 ACATATCATAGACATAAAGGTAGGTGC 58.685 37.037 0.00 0.00 0.00 5.01
589 2788 9.645059 CACATATCATAGACATAAAGGTAGGTG 57.355 37.037 0.00 0.00 0.00 4.00
590 2789 9.601810 TCACATATCATAGACATAAAGGTAGGT 57.398 33.333 0.00 0.00 0.00 3.08
594 2793 8.938883 AGGTTCACATATCATAGACATAAAGGT 58.061 33.333 0.00 0.00 0.00 3.50
600 2799 9.147732 TCTGTTAGGTTCACATATCATAGACAT 57.852 33.333 0.00 0.00 0.00 3.06
601 2800 8.533569 TCTGTTAGGTTCACATATCATAGACA 57.466 34.615 0.00 0.00 0.00 3.41
602 2801 9.416794 CATCTGTTAGGTTCACATATCATAGAC 57.583 37.037 0.00 0.00 0.00 2.59
603 2802 8.588472 CCATCTGTTAGGTTCACATATCATAGA 58.412 37.037 0.00 0.00 0.00 1.98
604 2803 8.370940 ACCATCTGTTAGGTTCACATATCATAG 58.629 37.037 0.00 0.00 33.39 2.23
605 2804 8.262601 ACCATCTGTTAGGTTCACATATCATA 57.737 34.615 0.00 0.00 33.39 2.15
606 2805 7.141758 ACCATCTGTTAGGTTCACATATCAT 57.858 36.000 0.00 0.00 33.39 2.45
607 2806 6.560003 ACCATCTGTTAGGTTCACATATCA 57.440 37.500 0.00 0.00 33.39 2.15
608 2807 7.011482 GTCAACCATCTGTTAGGTTCACATATC 59.989 40.741 0.00 0.00 45.93 1.63
609 2808 6.823689 GTCAACCATCTGTTAGGTTCACATAT 59.176 38.462 0.00 0.00 45.93 1.78
610 2809 6.170506 GTCAACCATCTGTTAGGTTCACATA 58.829 40.000 0.00 0.00 45.93 2.29
611 2810 5.003804 GTCAACCATCTGTTAGGTTCACAT 58.996 41.667 0.00 0.00 45.93 3.21
612 2811 4.385825 GTCAACCATCTGTTAGGTTCACA 58.614 43.478 0.00 0.00 45.93 3.58
613 2812 3.751698 GGTCAACCATCTGTTAGGTTCAC 59.248 47.826 0.00 0.00 45.93 3.18
614 2813 3.244770 GGGTCAACCATCTGTTAGGTTCA 60.245 47.826 0.89 0.00 45.93 3.18
615 2814 3.244770 TGGGTCAACCATCTGTTAGGTTC 60.245 47.826 0.89 0.00 46.80 3.62
616 2815 2.714250 TGGGTCAACCATCTGTTAGGTT 59.286 45.455 0.89 0.00 46.80 3.50
617 2816 2.344592 TGGGTCAACCATCTGTTAGGT 58.655 47.619 0.89 0.00 46.80 3.08
627 2826 5.872150 GTCACTGACATGTGGGTCAACCA 62.872 52.174 1.15 0.00 46.36 3.67
628 2827 1.202758 TCACTGACATGTGGGTCAACC 60.203 52.381 1.15 0.00 46.36 3.77
629 2828 1.873591 GTCACTGACATGTGGGTCAAC 59.126 52.381 1.15 0.00 46.36 3.18
630 2829 1.202758 GGTCACTGACATGTGGGTCAA 60.203 52.381 1.15 0.00 46.36 3.18
631 2830 0.396435 GGTCACTGACATGTGGGTCA 59.604 55.000 1.15 0.00 45.06 4.02
632 2831 0.321653 GGGTCACTGACATGTGGGTC 60.322 60.000 1.15 0.00 38.40 4.46
633 2832 1.059584 TGGGTCACTGACATGTGGGT 61.060 55.000 1.15 0.00 38.40 4.51
634 2833 0.110295 TTGGGTCACTGACATGTGGG 59.890 55.000 1.15 0.00 38.40 4.61
635 2834 1.881973 CTTTGGGTCACTGACATGTGG 59.118 52.381 1.15 0.00 38.40 4.17
636 2835 1.881973 CCTTTGGGTCACTGACATGTG 59.118 52.381 1.15 0.00 39.15 3.21
637 2836 1.819305 GCCTTTGGGTCACTGACATGT 60.819 52.381 11.34 0.00 33.68 3.21
638 2837 0.883833 GCCTTTGGGTCACTGACATG 59.116 55.000 11.34 0.00 33.68 3.21
639 2838 0.478072 TGCCTTTGGGTCACTGACAT 59.522 50.000 11.34 0.00 33.68 3.06
640 2839 0.179020 CTGCCTTTGGGTCACTGACA 60.179 55.000 11.34 0.00 33.68 3.58
641 2840 0.890996 CCTGCCTTTGGGTCACTGAC 60.891 60.000 0.00 0.00 34.45 3.51
642 2841 1.352622 ACCTGCCTTTGGGTCACTGA 61.353 55.000 0.00 0.00 34.45 3.41
643 2842 1.151450 ACCTGCCTTTGGGTCACTG 59.849 57.895 0.00 0.00 34.45 3.66
644 2843 1.151450 CACCTGCCTTTGGGTCACT 59.849 57.895 0.00 0.00 32.95 3.41
645 2844 2.564721 GCACCTGCCTTTGGGTCAC 61.565 63.158 0.00 0.00 32.95 3.67
646 2845 2.203480 GCACCTGCCTTTGGGTCA 60.203 61.111 0.00 0.00 32.95 4.02
663 2862 1.302832 AGCTTCGGTGCCTTGAAGG 60.303 57.895 6.92 6.92 41.46 3.46
664 2863 1.871772 CAGCTTCGGTGCCTTGAAG 59.128 57.895 4.96 4.96 43.48 3.02
665 2864 4.063529 CAGCTTCGGTGCCTTGAA 57.936 55.556 0.00 0.00 0.00 2.69
680 2879 6.519265 CACATATACTGTTTGCGGACGCAG 62.519 50.000 19.13 10.46 43.97 5.18
681 2880 4.766778 CACATATACTGTTTGCGGACGCA 61.767 47.826 16.11 16.11 42.47 5.24
682 2881 1.931172 ACATATACTGTTTGCGGACGC 59.069 47.619 10.13 10.13 36.76 5.19
683 2882 2.285602 GCACATATACTGTTTGCGGACG 60.286 50.000 0.00 0.00 35.29 4.79
684 2883 2.285602 CGCACATATACTGTTTGCGGAC 60.286 50.000 6.38 0.00 43.04 4.79
685 2884 1.930503 CGCACATATACTGTTTGCGGA 59.069 47.619 6.38 0.00 43.04 5.54
686 2885 1.594518 GCGCACATATACTGTTTGCGG 60.595 52.381 15.22 0.00 45.40 5.69
687 2886 1.061857 TGCGCACATATACTGTTTGCG 59.938 47.619 5.66 9.77 46.99 4.85
785 2984 2.122768 AGCCTTCCCCAGATTCACTAG 58.877 52.381 0.00 0.00 0.00 2.57
788 2991 1.283321 AGAAGCCTTCCCCAGATTCAC 59.717 52.381 0.00 0.00 0.00 3.18
804 3007 2.107366 GTTGGAGGGAGGAGAGAGAAG 58.893 57.143 0.00 0.00 0.00 2.85
846 3049 9.760926 TGGCTCTACTTCTACTTATATCATGAT 57.239 33.333 13.81 13.81 0.00 2.45
847 3050 9.015367 GTGGCTCTACTTCTACTTATATCATGA 57.985 37.037 0.00 0.00 0.00 3.07
848 3051 8.247562 GGTGGCTCTACTTCTACTTATATCATG 58.752 40.741 0.00 0.00 0.00 3.07
849 3052 8.174085 AGGTGGCTCTACTTCTACTTATATCAT 58.826 37.037 0.00 0.00 0.00 2.45
850 3053 7.527796 AGGTGGCTCTACTTCTACTTATATCA 58.472 38.462 0.00 0.00 0.00 2.15
851 3054 7.121611 GGAGGTGGCTCTACTTCTACTTATATC 59.878 44.444 0.00 0.00 0.00 1.63
957 3164 2.634940 CAGAGGAAGGAGGTTTGAGTGA 59.365 50.000 0.00 0.00 0.00 3.41
1040 3250 1.973816 CTCGGAGTCGGAGGAGGAGA 61.974 65.000 17.69 0.00 36.95 3.71
1087 3297 6.620303 GCACAAGAAACAATCTGACAGAGATC 60.620 42.308 11.52 4.78 40.89 2.75
1101 3311 1.742831 ACAAAGCTCGCACAAGAAACA 59.257 42.857 0.00 0.00 0.00 2.83
1124 3334 1.079503 AGAAAGAAGCGCGGAATCAC 58.920 50.000 8.83 0.00 0.00 3.06
1139 3349 1.371183 CACGGACCTGGAGCAGAAA 59.629 57.895 0.00 0.00 32.44 2.52
1208 3418 3.118775 CGTCCATTACCTTGTGGAGATGA 60.119 47.826 0.00 0.00 44.71 2.92
1291 3501 2.483583 TGCGCAGAAAACAAATCGTT 57.516 40.000 5.66 0.00 40.50 3.85
1292 3502 2.287547 ACATGCGCAGAAAACAAATCGT 60.288 40.909 18.32 0.00 0.00 3.73
1332 3544 7.856145 ATGCAACCTAAGATTAGAGAAACAG 57.144 36.000 0.00 0.00 32.47 3.16
1401 3616 4.642885 AGGATCCGATCGATAAGAGATTCC 59.357 45.833 18.66 9.09 0.00 3.01
1680 3901 2.032681 AGCTTGGCCACGAGGTTC 59.967 61.111 14.50 0.00 35.30 3.62
2172 4393 1.566211 CCTTGAGGAGCTTGAGGAGA 58.434 55.000 0.00 0.00 37.39 3.71
2580 4801 2.383527 CGCGAGCAGTTTCTCCACC 61.384 63.158 0.00 0.00 0.00 4.61
2589 4810 4.435436 TCGGCAATCGCGAGCAGT 62.435 61.111 20.18 0.00 39.92 4.40
3188 5415 1.424635 GAACTCCTCGTCGTCCTCG 59.575 63.158 0.00 0.00 38.55 4.63
3346 5573 1.689273 GCTGGCTGCTAGTGGTACTAT 59.311 52.381 14.66 0.00 38.95 2.12
3347 5574 1.112113 GCTGGCTGCTAGTGGTACTA 58.888 55.000 14.66 0.00 38.95 1.82
3535 5762 6.845758 AGCAGCGGGTATAATAGTATACAA 57.154 37.500 19.04 0.00 42.71 2.41
3621 5854 3.498018 TCATCATGACCGTGTTTTGTCAG 59.502 43.478 0.00 0.00 44.07 3.51
3632 5865 4.318333 CGAAACTGCTTATCATCATGACCG 60.318 45.833 0.00 0.00 0.00 4.79
3645 5878 5.437289 TCAAACATGATTCGAAACTGCTT 57.563 34.783 0.00 0.00 0.00 3.91
3683 5916 1.358787 TGGTGATGGATGGCCTCTTTT 59.641 47.619 3.32 0.00 34.31 2.27
3724 5957 4.037208 CCAAGTGGATGGCAATCATAAGAC 59.963 45.833 2.85 0.00 35.97 3.01
3779 6012 3.308402 CCTCTCTCTCTCTCTGTCCTTGT 60.308 52.174 0.00 0.00 0.00 3.16
3801 6034 3.766068 TTCATCCATGCTCATCTCTCC 57.234 47.619 0.00 0.00 0.00 3.71
3821 6054 3.306019 GCATTGTTCTCCCGTGGAATTTT 60.306 43.478 0.00 0.00 0.00 1.82
3868 6103 6.293407 GCTTGTGTCTGTACTGATGCTAAAAA 60.293 38.462 5.69 0.00 0.00 1.94
3869 6104 5.179368 GCTTGTGTCTGTACTGATGCTAAAA 59.821 40.000 5.69 0.00 0.00 1.52
3870 6105 4.690748 GCTTGTGTCTGTACTGATGCTAAA 59.309 41.667 5.69 0.00 0.00 1.85
3871 6106 4.245660 GCTTGTGTCTGTACTGATGCTAA 58.754 43.478 5.69 0.07 0.00 3.09
3872 6107 3.673323 CGCTTGTGTCTGTACTGATGCTA 60.673 47.826 5.69 0.00 0.00 3.49
3873 6108 2.693069 GCTTGTGTCTGTACTGATGCT 58.307 47.619 5.69 0.00 0.00 3.79
3874 6109 1.391485 CGCTTGTGTCTGTACTGATGC 59.609 52.381 5.69 3.20 0.00 3.91
3875 6110 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
3876 6111 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
3877 6112 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
3878 6113 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
3879 6114 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
3880 6115 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
3881 6116 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
3882 6117 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
3883 6118 4.322009 CGTATATATGAGCGCTTGTGTCTG 59.678 45.833 13.26 0.00 0.00 3.51
3884 6119 4.476862 CGTATATATGAGCGCTTGTGTCT 58.523 43.478 13.26 0.00 0.00 3.41
3885 6120 3.059570 GCGTATATATGAGCGCTTGTGTC 59.940 47.826 13.26 0.00 45.48 3.67
3886 6121 2.987149 GCGTATATATGAGCGCTTGTGT 59.013 45.455 13.26 4.27 45.48 3.72
3887 6122 2.026860 CGCGTATATATGAGCGCTTGTG 59.973 50.000 13.26 6.56 46.56 3.33
3888 6123 2.251040 CGCGTATATATGAGCGCTTGT 58.749 47.619 13.26 5.98 46.56 3.16
3889 6124 2.959586 CGCGTATATATGAGCGCTTG 57.040 50.000 13.26 7.35 46.56 4.01
3894 6129 5.458779 TGAATGTATGCGCGTATATATGAGC 59.541 40.000 22.86 20.14 38.31 4.26
3895 6130 6.074835 GGTGAATGTATGCGCGTATATATGAG 60.075 42.308 22.86 3.76 0.00 2.90
3896 6131 5.746721 GGTGAATGTATGCGCGTATATATGA 59.253 40.000 22.86 12.56 0.00 2.15
3897 6132 5.051039 GGGTGAATGTATGCGCGTATATATG 60.051 44.000 22.86 0.00 0.00 1.78
3898 6133 5.047847 GGGTGAATGTATGCGCGTATATAT 58.952 41.667 19.79 18.88 0.00 0.86
3899 6134 4.426416 GGGTGAATGTATGCGCGTATATA 58.574 43.478 19.79 17.42 0.00 0.86
3900 6135 3.259064 GGGTGAATGTATGCGCGTATAT 58.741 45.455 19.79 12.93 0.00 0.86
3901 6136 2.610976 GGGGTGAATGTATGCGCGTATA 60.611 50.000 13.13 13.13 0.00 1.47
3902 6137 1.508632 GGGTGAATGTATGCGCGTAT 58.491 50.000 15.52 15.52 0.00 3.06
3903 6138 0.531090 GGGGTGAATGTATGCGCGTA 60.531 55.000 8.43 4.92 0.00 4.42
3904 6139 1.817941 GGGGTGAATGTATGCGCGT 60.818 57.895 8.43 7.55 0.00 6.01
3905 6140 0.249699 TAGGGGTGAATGTATGCGCG 60.250 55.000 0.00 0.00 0.00 6.86
3906 6141 1.806542 CATAGGGGTGAATGTATGCGC 59.193 52.381 0.00 0.00 0.00 6.09
3907 6142 3.401033 TCATAGGGGTGAATGTATGCG 57.599 47.619 0.00 0.00 0.00 4.73
3908 6143 3.498397 CGTTCATAGGGGTGAATGTATGC 59.502 47.826 0.00 0.00 39.99 3.14
3909 6144 3.498397 GCGTTCATAGGGGTGAATGTATG 59.502 47.826 9.71 0.00 43.66 2.39
3910 6145 3.135712 TGCGTTCATAGGGGTGAATGTAT 59.864 43.478 9.71 0.00 43.66 2.29
3911 6146 2.502130 TGCGTTCATAGGGGTGAATGTA 59.498 45.455 9.71 3.79 43.66 2.29
3912 6147 1.280710 TGCGTTCATAGGGGTGAATGT 59.719 47.619 9.71 0.00 43.66 2.71
3913 6148 1.670811 GTGCGTTCATAGGGGTGAATG 59.329 52.381 4.85 4.85 44.27 2.67
3914 6149 1.742411 CGTGCGTTCATAGGGGTGAAT 60.742 52.381 0.00 0.00 39.99 2.57
3915 6150 0.390603 CGTGCGTTCATAGGGGTGAA 60.391 55.000 0.00 0.00 35.84 3.18
3916 6151 1.216977 CGTGCGTTCATAGGGGTGA 59.783 57.895 0.00 0.00 0.00 4.02
3917 6152 2.461110 GCGTGCGTTCATAGGGGTG 61.461 63.158 0.00 0.00 0.00 4.61
3918 6153 2.125269 GCGTGCGTTCATAGGGGT 60.125 61.111 0.00 0.00 0.00 4.95
3919 6154 2.125310 TGCGTGCGTTCATAGGGG 60.125 61.111 0.00 0.00 0.00 4.79
3920 6155 2.798501 CGTGCGTGCGTTCATAGGG 61.799 63.158 0.00 0.00 0.00 3.53
3921 6156 2.695055 CGTGCGTGCGTTCATAGG 59.305 61.111 0.00 0.00 0.00 2.57
3922 6157 2.020016 GCGTGCGTGCGTTCATAG 59.980 61.111 3.11 0.00 0.00 2.23
3923 6158 2.735100 TGCGTGCGTGCGTTCATA 60.735 55.556 3.11 0.00 37.81 2.15
3924 6159 4.368808 GTGCGTGCGTGCGTTCAT 62.369 61.111 3.11 0.00 37.81 2.57
3931 6166 3.411351 GTAGGGTGTGCGTGCGTG 61.411 66.667 0.00 0.00 0.00 5.34
3932 6167 4.675029 GGTAGGGTGTGCGTGCGT 62.675 66.667 0.00 0.00 0.00 5.24
3933 6168 4.373116 AGGTAGGGTGTGCGTGCG 62.373 66.667 0.00 0.00 0.00 5.34
3934 6169 1.601419 TAGAGGTAGGGTGTGCGTGC 61.601 60.000 0.00 0.00 0.00 5.34
3935 6170 1.112113 ATAGAGGTAGGGTGTGCGTG 58.888 55.000 0.00 0.00 0.00 5.34
3936 6171 1.112113 CATAGAGGTAGGGTGTGCGT 58.888 55.000 0.00 0.00 0.00 5.24
3937 6172 1.338337 CTCATAGAGGTAGGGTGTGCG 59.662 57.143 0.00 0.00 0.00 5.34
3938 6173 1.069358 GCTCATAGAGGTAGGGTGTGC 59.931 57.143 0.00 0.00 0.00 4.57
3939 6174 2.388735 TGCTCATAGAGGTAGGGTGTG 58.611 52.381 0.00 0.00 0.00 3.82
3940 6175 2.848678 TGCTCATAGAGGTAGGGTGT 57.151 50.000 0.00 0.00 0.00 4.16
3941 6176 3.505386 AGATGCTCATAGAGGTAGGGTG 58.495 50.000 0.00 0.00 0.00 4.61
3942 6177 3.913370 AGATGCTCATAGAGGTAGGGT 57.087 47.619 0.00 0.00 0.00 4.34
3943 6178 3.192422 CGAAGATGCTCATAGAGGTAGGG 59.808 52.174 0.00 0.00 0.00 3.53
3944 6179 4.075682 TCGAAGATGCTCATAGAGGTAGG 58.924 47.826 0.00 0.00 0.00 3.18
3945 6180 5.000591 TCTCGAAGATGCTCATAGAGGTAG 58.999 45.833 0.00 0.00 33.89 3.18
3946 6181 4.974399 TCTCGAAGATGCTCATAGAGGTA 58.026 43.478 0.00 0.00 33.89 3.08
3947 6182 3.820467 CTCTCGAAGATGCTCATAGAGGT 59.180 47.826 0.00 0.00 33.89 3.85
3948 6183 4.071423 TCTCTCGAAGATGCTCATAGAGG 58.929 47.826 0.00 0.00 33.89 3.69
3949 6184 4.756642 AGTCTCTCGAAGATGCTCATAGAG 59.243 45.833 0.00 0.00 36.11 2.43
3950 6185 4.514816 CAGTCTCTCGAAGATGCTCATAGA 59.485 45.833 0.00 0.00 36.11 1.98
3951 6186 4.514816 TCAGTCTCTCGAAGATGCTCATAG 59.485 45.833 0.00 0.00 36.11 2.23
3952 6187 4.455606 TCAGTCTCTCGAAGATGCTCATA 58.544 43.478 0.00 0.00 36.11 2.15
3953 6188 3.286353 TCAGTCTCTCGAAGATGCTCAT 58.714 45.455 0.00 0.00 36.11 2.90
3954 6189 2.682352 CTCAGTCTCTCGAAGATGCTCA 59.318 50.000 0.00 0.00 36.11 4.26
3955 6190 2.541588 GCTCAGTCTCTCGAAGATGCTC 60.542 54.545 0.00 0.00 36.11 4.26
3956 6191 1.405105 GCTCAGTCTCTCGAAGATGCT 59.595 52.381 0.00 0.00 36.11 3.79
3957 6192 1.535860 GGCTCAGTCTCTCGAAGATGC 60.536 57.143 0.00 0.00 36.11 3.91
3958 6193 1.268488 CGGCTCAGTCTCTCGAAGATG 60.268 57.143 0.00 0.00 36.11 2.90
3959 6194 1.021202 CGGCTCAGTCTCTCGAAGAT 58.979 55.000 0.00 0.00 36.11 2.40
3960 6195 1.027255 CCGGCTCAGTCTCTCGAAGA 61.027 60.000 0.00 0.00 0.00 2.87
3961 6196 1.431440 CCGGCTCAGTCTCTCGAAG 59.569 63.158 0.00 0.00 0.00 3.79
3962 6197 2.701780 GCCGGCTCAGTCTCTCGAA 61.702 63.158 22.15 0.00 0.00 3.71
3963 6198 3.134792 GCCGGCTCAGTCTCTCGA 61.135 66.667 22.15 0.00 0.00 4.04
3964 6199 1.448119 TATGCCGGCTCAGTCTCTCG 61.448 60.000 29.70 0.00 0.00 4.04
3965 6200 0.965439 ATATGCCGGCTCAGTCTCTC 59.035 55.000 29.70 0.00 0.00 3.20
3966 6201 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
3967 6202 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
3968 6203 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
3969 6204 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
3970 6205 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
3971 6206 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
3972 6207 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
3973 6208 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
3974 6209 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
3975 6210 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
3976 6211 5.062683 CGTAAATCTCAAGATGATATGCCGG 59.937 44.000 0.00 0.00 34.49 6.13
3977 6212 5.863935 TCGTAAATCTCAAGATGATATGCCG 59.136 40.000 0.00 0.00 34.49 5.69
3978 6213 7.386299 ACTTCGTAAATCTCAAGATGATATGCC 59.614 37.037 0.00 0.00 34.49 4.40
3979 6214 8.304202 ACTTCGTAAATCTCAAGATGATATGC 57.696 34.615 0.00 0.00 34.49 3.14
3980 6215 9.468532 TGACTTCGTAAATCTCAAGATGATATG 57.531 33.333 0.00 0.00 34.49 1.78
3981 6216 9.469807 GTGACTTCGTAAATCTCAAGATGATAT 57.530 33.333 0.00 0.00 34.49 1.63
3982 6217 7.921214 GGTGACTTCGTAAATCTCAAGATGATA 59.079 37.037 0.00 0.00 34.49 2.15
3983 6218 6.758886 GGTGACTTCGTAAATCTCAAGATGAT 59.241 38.462 0.00 0.00 34.49 2.45
3984 6219 6.100004 GGTGACTTCGTAAATCTCAAGATGA 58.900 40.000 0.00 0.00 34.49 2.92
3985 6220 5.004821 CGGTGACTTCGTAAATCTCAAGATG 59.995 44.000 0.00 0.00 34.49 2.90
3986 6221 5.103000 CGGTGACTTCGTAAATCTCAAGAT 58.897 41.667 0.00 0.00 36.07 2.40
3987 6222 4.022589 ACGGTGACTTCGTAAATCTCAAGA 60.023 41.667 0.00 0.00 39.22 3.02
3988 6223 4.235360 ACGGTGACTTCGTAAATCTCAAG 58.765 43.478 0.00 0.00 39.22 3.02
3989 6224 4.247267 ACGGTGACTTCGTAAATCTCAA 57.753 40.909 0.00 0.00 39.22 3.02
3990 6225 3.928727 ACGGTGACTTCGTAAATCTCA 57.071 42.857 0.00 0.00 39.22 3.27
3991 6226 4.349501 CCTACGGTGACTTCGTAAATCTC 58.650 47.826 0.00 0.00 41.62 2.75
3992 6227 3.428589 GCCTACGGTGACTTCGTAAATCT 60.429 47.826 0.00 0.00 41.62 2.40
3993 6228 2.856557 GCCTACGGTGACTTCGTAAATC 59.143 50.000 0.00 0.00 41.62 2.17
3994 6229 2.733227 CGCCTACGGTGACTTCGTAAAT 60.733 50.000 0.00 0.00 41.62 1.40
3995 6230 1.401409 CGCCTACGGTGACTTCGTAAA 60.401 52.381 0.00 0.00 41.62 2.01
3996 6231 0.168788 CGCCTACGGTGACTTCGTAA 59.831 55.000 0.00 0.00 41.62 3.18
3997 6232 1.796151 CGCCTACGGTGACTTCGTA 59.204 57.895 0.00 0.00 41.38 3.43
3998 6233 2.564975 CGCCTACGGTGACTTCGT 59.435 61.111 0.00 0.00 43.64 3.85
3999 6234 2.879462 GCGCCTACGGTGACTTCG 60.879 66.667 0.00 0.00 40.57 3.79
4000 6235 2.508663 GGCGCCTACGGTGACTTC 60.509 66.667 22.15 0.00 38.38 3.01
4003 6238 4.849329 CGAGGCGCCTACGGTGAC 62.849 72.222 32.97 14.51 42.50 3.67
4005 6240 4.849329 GACGAGGCGCCTACGGTG 62.849 72.222 34.97 23.88 40.57 4.94
4008 6243 4.883300 GACGACGAGGCGCCTACG 62.883 72.222 32.91 32.91 44.07 3.51
4031 6266 1.475403 TTCAGTGGGAGGAGACGATC 58.525 55.000 0.00 0.00 0.00 3.69
4032 6267 1.827969 CTTTCAGTGGGAGGAGACGAT 59.172 52.381 0.00 0.00 0.00 3.73
4033 6268 1.257743 CTTTCAGTGGGAGGAGACGA 58.742 55.000 0.00 0.00 0.00 4.20
4034 6269 0.390472 GCTTTCAGTGGGAGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
4035 6270 0.390472 CGCTTTCAGTGGGAGGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
4036 6271 1.975327 CGCTTTCAGTGGGAGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
4037 6272 1.743252 GCGCTTTCAGTGGGAGGAG 60.743 63.158 0.00 0.00 0.00 3.69
4038 6273 1.841302 ATGCGCTTTCAGTGGGAGGA 61.841 55.000 9.73 0.00 0.00 3.71
4039 6274 1.372087 GATGCGCTTTCAGTGGGAGG 61.372 60.000 9.73 0.00 0.00 4.30
4040 6275 1.699656 CGATGCGCTTTCAGTGGGAG 61.700 60.000 9.73 0.00 0.00 4.30
4041 6276 1.741401 CGATGCGCTTTCAGTGGGA 60.741 57.895 9.73 0.00 0.00 4.37
4042 6277 2.787249 CGATGCGCTTTCAGTGGG 59.213 61.111 9.73 0.00 0.00 4.61
4053 6288 1.010797 CAGAATTTCCGGCGATGCG 60.011 57.895 9.30 0.00 0.00 4.73
4054 6289 0.732571 TTCAGAATTTCCGGCGATGC 59.267 50.000 9.30 0.00 0.00 3.91
4055 6290 3.698029 ATTTCAGAATTTCCGGCGATG 57.302 42.857 9.30 0.00 0.00 3.84
4056 6291 4.881850 AGTTATTTCAGAATTTCCGGCGAT 59.118 37.500 9.30 0.00 0.00 4.58
4057 6292 4.258543 AGTTATTTCAGAATTTCCGGCGA 58.741 39.130 9.30 0.00 0.00 5.54
4058 6293 4.616181 AGTTATTTCAGAATTTCCGGCG 57.384 40.909 0.00 0.00 0.00 6.46
4059 6294 5.949735 TGAAGTTATTTCAGAATTTCCGGC 58.050 37.500 0.00 0.00 40.82 6.13
4070 6305 7.705325 GCTCGTAGTATTCCTGAAGTTATTTCA 59.295 37.037 0.00 0.00 43.40 2.69
4071 6306 7.705325 TGCTCGTAGTATTCCTGAAGTTATTTC 59.295 37.037 0.00 0.00 36.29 2.17
4072 6307 7.491696 GTGCTCGTAGTATTCCTGAAGTTATTT 59.508 37.037 0.00 0.00 0.00 1.40
4073 6308 6.979238 GTGCTCGTAGTATTCCTGAAGTTATT 59.021 38.462 0.00 0.00 0.00 1.40
4074 6309 6.461231 GGTGCTCGTAGTATTCCTGAAGTTAT 60.461 42.308 0.00 0.00 0.00 1.89
4075 6310 5.163581 GGTGCTCGTAGTATTCCTGAAGTTA 60.164 44.000 0.00 0.00 0.00 2.24
4076 6311 4.381718 GGTGCTCGTAGTATTCCTGAAGTT 60.382 45.833 0.00 0.00 0.00 2.66
4077 6312 3.130693 GGTGCTCGTAGTATTCCTGAAGT 59.869 47.826 0.00 0.00 0.00 3.01
4078 6313 3.130516 TGGTGCTCGTAGTATTCCTGAAG 59.869 47.826 0.00 0.00 0.00 3.02
4079 6314 3.093814 TGGTGCTCGTAGTATTCCTGAA 58.906 45.455 0.00 0.00 0.00 3.02
4080 6315 2.688446 CTGGTGCTCGTAGTATTCCTGA 59.312 50.000 0.00 0.00 0.00 3.86
4081 6316 2.223829 CCTGGTGCTCGTAGTATTCCTG 60.224 54.545 0.00 0.00 0.00 3.86
4082 6317 2.032620 CCTGGTGCTCGTAGTATTCCT 58.967 52.381 0.00 0.00 0.00 3.36
4083 6318 2.029623 TCCTGGTGCTCGTAGTATTCC 58.970 52.381 0.00 0.00 0.00 3.01
4084 6319 4.323553 AATCCTGGTGCTCGTAGTATTC 57.676 45.455 0.00 0.00 0.00 1.75
4085 6320 4.161565 TCAAATCCTGGTGCTCGTAGTATT 59.838 41.667 0.00 0.00 0.00 1.89
4086 6321 3.704566 TCAAATCCTGGTGCTCGTAGTAT 59.295 43.478 0.00 0.00 0.00 2.12
4087 6322 3.093814 TCAAATCCTGGTGCTCGTAGTA 58.906 45.455 0.00 0.00 0.00 1.82
4088 6323 1.899814 TCAAATCCTGGTGCTCGTAGT 59.100 47.619 0.00 0.00 0.00 2.73
4089 6324 2.672961 TCAAATCCTGGTGCTCGTAG 57.327 50.000 0.00 0.00 0.00 3.51
4090 6325 2.614481 GGTTCAAATCCTGGTGCTCGTA 60.614 50.000 0.00 0.00 0.00 3.43
4091 6326 1.523758 GTTCAAATCCTGGTGCTCGT 58.476 50.000 0.00 0.00 0.00 4.18
4092 6327 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
4093 6328 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
4094 6329 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
4095 6330 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
4111 6346 1.525442 GTATCCCGAACCCACCAGG 59.475 63.158 0.00 0.00 43.78 4.45
4112 6347 1.268992 TGGTATCCCGAACCCACCAG 61.269 60.000 0.00 0.00 34.40 4.00
4113 6348 1.229561 TGGTATCCCGAACCCACCA 60.230 57.895 0.00 0.00 36.94 4.17
4114 6349 1.222661 GTGGTATCCCGAACCCACC 59.777 63.158 0.00 0.00 41.20 4.61
4115 6350 0.107848 CAGTGGTATCCCGAACCCAC 60.108 60.000 0.00 0.00 46.17 4.61
4116 6351 0.545787 ACAGTGGTATCCCGAACCCA 60.546 55.000 0.00 0.00 36.06 4.51
4117 6352 0.177373 GACAGTGGTATCCCGAACCC 59.823 60.000 0.00 0.00 36.06 4.11
4118 6353 0.177373 GGACAGTGGTATCCCGAACC 59.823 60.000 0.00 0.00 37.53 3.62
4119 6354 0.899720 TGGACAGTGGTATCCCGAAC 59.100 55.000 0.00 0.00 33.69 3.95
4120 6355 0.899720 GTGGACAGTGGTATCCCGAA 59.100 55.000 0.00 0.00 33.69 4.30
4121 6356 0.974010 GGTGGACAGTGGTATCCCGA 60.974 60.000 0.00 0.00 33.69 5.14
4122 6357 0.976073 AGGTGGACAGTGGTATCCCG 60.976 60.000 0.00 0.00 33.69 5.14
4123 6358 2.169978 GTTAGGTGGACAGTGGTATCCC 59.830 54.545 0.00 0.00 33.69 3.85
4124 6359 2.835764 TGTTAGGTGGACAGTGGTATCC 59.164 50.000 0.00 0.00 35.37 2.59
4125 6360 4.020485 AGTTGTTAGGTGGACAGTGGTATC 60.020 45.833 0.00 0.00 0.00 2.24
4126 6361 3.908103 AGTTGTTAGGTGGACAGTGGTAT 59.092 43.478 0.00 0.00 0.00 2.73
4127 6362 3.311091 AGTTGTTAGGTGGACAGTGGTA 58.689 45.455 0.00 0.00 0.00 3.25
4128 6363 2.104281 GAGTTGTTAGGTGGACAGTGGT 59.896 50.000 0.00 0.00 0.00 4.16
4129 6364 2.104111 TGAGTTGTTAGGTGGACAGTGG 59.896 50.000 0.00 0.00 0.00 4.00
4130 6365 3.469008 TGAGTTGTTAGGTGGACAGTG 57.531 47.619 0.00 0.00 0.00 3.66
4131 6366 3.433173 GGTTGAGTTGTTAGGTGGACAGT 60.433 47.826 0.00 0.00 0.00 3.55
4132 6367 3.139077 GGTTGAGTTGTTAGGTGGACAG 58.861 50.000 0.00 0.00 0.00 3.51
4133 6368 2.506231 TGGTTGAGTTGTTAGGTGGACA 59.494 45.455 0.00 0.00 0.00 4.02
4134 6369 2.876550 GTGGTTGAGTTGTTAGGTGGAC 59.123 50.000 0.00 0.00 0.00 4.02
4135 6370 2.506231 TGTGGTTGAGTTGTTAGGTGGA 59.494 45.455 0.00 0.00 0.00 4.02
4136 6371 2.878406 CTGTGGTTGAGTTGTTAGGTGG 59.122 50.000 0.00 0.00 0.00 4.61
4137 6372 2.878406 CCTGTGGTTGAGTTGTTAGGTG 59.122 50.000 0.00 0.00 0.00 4.00
4138 6373 2.508300 ACCTGTGGTTGAGTTGTTAGGT 59.492 45.455 0.00 0.00 27.29 3.08
4139 6374 3.208747 ACCTGTGGTTGAGTTGTTAGG 57.791 47.619 0.00 0.00 27.29 2.69
4151 6386 5.871396 ATATCTACGAATCAACCTGTGGT 57.129 39.130 0.00 0.00 37.65 4.16
4152 6387 6.982852 ACTATATCTACGAATCAACCTGTGG 58.017 40.000 0.00 0.00 0.00 4.17
4289 6524 1.294659 CGTTTGGAGCTGAGGTGAGC 61.295 60.000 0.00 0.00 39.46 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.