Multiple sequence alignment - TraesCS6A01G208500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G208500 chr6A 100.000 3910 0 0 1989 5898 374889191 374893100 0.000000e+00 7221.0
1 TraesCS6A01G208500 chr6A 100.000 1775 0 0 1 1775 374887203 374888977 0.000000e+00 3278.0
2 TraesCS6A01G208500 chr6A 88.125 160 19 0 5721 5880 374923716 374923875 2.170000e-44 191.0
3 TraesCS6A01G208500 chr6D 97.060 3299 71 12 2256 5528 265177593 265180891 0.000000e+00 5531.0
4 TraesCS6A01G208500 chr6D 97.072 1776 47 4 1 1774 265174116 265175888 0.000000e+00 2987.0
5 TraesCS6A01G208500 chr6D 98.824 170 2 0 1989 2158 265175937 265176106 2.670000e-78 303.0
6 TraesCS6A01G208500 chr6D 86.471 170 22 1 5714 5882 296749650 296749819 1.010000e-42 185.0
7 TraesCS6A01G208500 chr6D 82.143 224 17 6 5516 5716 265180906 265181129 2.830000e-38 171.0
8 TraesCS6A01G208500 chr6B 94.539 2362 50 26 3339 5636 412157609 412155263 0.000000e+00 3574.0
9 TraesCS6A01G208500 chr6B 95.642 1262 29 6 506 1743 412162556 412161297 0.000000e+00 2002.0
10 TraesCS6A01G208500 chr6B 96.619 976 33 0 1989 2964 412161291 412160316 0.000000e+00 1620.0
11 TraesCS6A01G208500 chr6B 96.737 521 16 1 1 520 412163231 412162711 0.000000e+00 867.0
12 TraesCS6A01G208500 chr6B 84.444 90 9 3 5371 5455 163967938 163967849 3.790000e-12 84.2
13 TraesCS6A01G208500 chr6B 96.000 50 1 1 5668 5716 412154931 412154882 4.900000e-11 80.5
14 TraesCS6A01G208500 chr3B 87.574 169 21 0 5714 5882 101437060 101436892 4.660000e-46 196.0
15 TraesCS6A01G208500 chr1B 86.471 170 23 0 5713 5882 528402967 528403136 2.810000e-43 187.0
16 TraesCS6A01G208500 chr2B 86.747 166 22 0 5717 5882 397444825 397444660 1.010000e-42 185.0
17 TraesCS6A01G208500 chr2B 88.462 52 6 0 5421 5472 9227917 9227866 4.930000e-06 63.9
18 TraesCS6A01G208500 chr2B 87.500 48 6 0 5372 5419 695437638 695437591 8.260000e-04 56.5
19 TraesCS6A01G208500 chr5D 86.310 168 23 0 5715 5882 138836325 138836158 3.630000e-42 183.0
20 TraesCS6A01G208500 chr5D 85.799 169 24 0 5714 5882 177572942 177573110 4.700000e-41 180.0
21 TraesCS6A01G208500 chr5D 89.583 48 5 0 5372 5419 491443163 491443116 1.770000e-05 62.1
22 TraesCS6A01G208500 chr4D 86.667 165 22 0 5717 5881 196618022 196617858 3.630000e-42 183.0
23 TraesCS6A01G208500 chr4D 85.799 169 24 0 5714 5882 89900066 89900234 4.700000e-41 180.0
24 TraesCS6A01G208500 chr7A 87.931 58 3 3 5374 5427 580052153 580052096 1.370000e-06 65.8
25 TraesCS6A01G208500 chr7A 92.308 39 3 0 4120 4158 369479468 369479430 8.260000e-04 56.5
26 TraesCS6A01G208500 chr1D 100.000 35 0 0 5421 5455 256276183 256276217 1.370000e-06 65.8
27 TraesCS6A01G208500 chr3A 91.304 46 4 0 5374 5419 418770786 418770831 4.930000e-06 63.9
28 TraesCS6A01G208500 chr3D 86.441 59 5 3 5407 5462 566448514 566448572 1.770000e-05 62.1
29 TraesCS6A01G208500 chr5B 94.737 38 2 0 5368 5405 478517341 478517304 6.380000e-05 60.2
30 TraesCS6A01G208500 chr4A 97.143 35 1 0 5421 5455 709423316 709423350 6.380000e-05 60.2
31 TraesCS6A01G208500 chr2D 87.755 49 6 0 5371 5419 235244400 235244352 2.300000e-04 58.4
32 TraesCS6A01G208500 chr2A 100.000 31 0 0 5427 5457 712196313 712196283 2.300000e-04 58.4
33 TraesCS6A01G208500 chr7D 92.308 39 3 0 4120 4158 332721494 332721456 8.260000e-04 56.5
34 TraesCS6A01G208500 chr7B 92.308 39 3 0 4120 4158 284966610 284966572 8.260000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G208500 chr6A 374887203 374893100 5897 False 5249.5 7221 100.00000 1 5898 2 chr6A.!!$F2 5897
1 TraesCS6A01G208500 chr6D 265174116 265181129 7013 False 2248.0 5531 93.77475 1 5716 4 chr6D.!!$F2 5715
2 TraesCS6A01G208500 chr6B 412154882 412163231 8349 True 1628.7 3574 95.90740 1 5716 5 chr6B.!!$R2 5715

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
597 769 0.101579 GCAGTCGGTCCTTCTAGAGC 59.898 60.000 0.00 0.00 0.00 4.09 F
877 1053 1.004320 TGCGCGGTTCTGGTACAAT 60.004 52.632 8.83 0.00 38.70 2.71 F
2328 3913 0.840288 TATGGGACCAGTGCACCTGT 60.840 55.000 14.63 11.18 39.74 4.00 F
3751 7777 0.530744 TGGTGCGACATAGTCCTGTC 59.469 55.000 0.00 0.00 41.73 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1696 1891 2.170187 AGCCACTATCCTCTTTGCAGAG 59.830 50.000 0.00 0.00 45.79 3.35 R
2781 4366 1.539388 CCAACGCTGAGGCATTGTTTA 59.461 47.619 0.00 0.00 39.61 2.01 R
3967 7998 1.666888 GCACAAACATTTCCTCAGGCG 60.667 52.381 0.00 0.00 0.00 5.52 R
5720 10116 0.323957 ACCCTGGTTTCTAGAACGCC 59.676 55.000 4.18 11.09 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 1.703966 ATCTCCCTCTCCCGGGGTA 60.704 63.158 23.50 8.23 44.78 3.69
113 114 4.404654 GCCGCCGCTTTTGACAGG 62.405 66.667 0.00 0.00 0.00 4.00
304 305 1.335496 TCATCATGATGCAATGCGGTG 59.665 47.619 27.68 5.13 38.65 4.94
478 479 9.722056 GGCTTTTATTACTGCATGCATATATAC 57.278 33.333 22.97 6.81 0.00 1.47
498 499 4.323569 ACTCTCCTCTATGTGAACAGGA 57.676 45.455 0.00 0.00 0.00 3.86
528 700 7.662897 AGTTGGTTCTTTTTGTTGTGAACTTA 58.337 30.769 0.00 0.00 38.86 2.24
597 769 0.101579 GCAGTCGGTCCTTCTAGAGC 59.898 60.000 0.00 0.00 0.00 4.09
647 819 8.598916 TCTAACATGTTCTTATACCAACTTCCA 58.401 33.333 15.85 0.00 0.00 3.53
679 855 4.870426 CGTGAAGAAGTATTGCATACACCT 59.130 41.667 0.00 0.00 38.21 4.00
693 869 5.163405 TGCATACACCTGATCCTTCTAGTTC 60.163 44.000 0.00 0.00 0.00 3.01
837 1013 6.476243 TTCTGAAAGTAGAATTTGCCGTAC 57.524 37.500 0.00 0.00 32.02 3.67
877 1053 1.004320 TGCGCGGTTCTGGTACAAT 60.004 52.632 8.83 0.00 38.70 2.71
1164 1347 6.798476 CGTCTGTTTACACTACGATCTACAAA 59.202 38.462 7.03 0.00 35.96 2.83
1339 1522 2.532250 TGAGAGAGGTGACCATGCTA 57.468 50.000 3.63 0.00 0.00 3.49
1398 1581 6.697455 CGCTTCTTTGCTGACTACTATCATTA 59.303 38.462 0.00 0.00 0.00 1.90
1422 1605 1.187567 ATTGGCTGGAAGTGTTGGGC 61.188 55.000 0.00 0.00 35.30 5.36
1575 1758 1.371558 GAACCTGGAGCCTCGTGTT 59.628 57.895 0.00 0.00 0.00 3.32
1696 1891 9.807649 ATTTTGCATTTGAATACTAGGTGAATC 57.192 29.630 0.00 0.00 0.00 2.52
1765 1961 4.951094 AGTGGTACTGTTGTAGGATCTCTC 59.049 45.833 0.00 0.00 0.00 3.20
1767 1963 4.950475 TGGTACTGTTGTAGGATCTCTCTG 59.050 45.833 0.00 0.00 0.00 3.35
1774 1970 2.493675 TGTAGGATCTCTCTGTGTGTGC 59.506 50.000 0.00 0.00 0.00 4.57
2328 3913 0.840288 TATGGGACCAGTGCACCTGT 60.840 55.000 14.63 11.18 39.74 4.00
2625 4210 9.424319 AGTTATAAATGTGTGTGACTTCTGTAG 57.576 33.333 0.00 0.00 0.00 2.74
2708 4293 4.521639 ACATGCATTGGCTGATCGAATATT 59.478 37.500 0.00 0.00 41.91 1.28
2781 4366 7.565680 AGCTTGCACTTATAACTATAACCAGT 58.434 34.615 0.00 0.00 0.00 4.00
3003 4588 4.333926 GCATACACCCATCTCTTTTGTCTC 59.666 45.833 0.00 0.00 0.00 3.36
3028 4613 3.126171 TGCATGTACATTGTTTAGACCGC 59.874 43.478 5.37 3.13 0.00 5.68
3161 7184 0.684805 TTTTCGTTGGGCAACTGGGT 60.685 50.000 0.00 0.00 39.08 4.51
3591 7616 2.366916 CCGGAGCAAGATAAGGAGATGT 59.633 50.000 0.00 0.00 0.00 3.06
3751 7777 0.530744 TGGTGCGACATAGTCCTGTC 59.469 55.000 0.00 0.00 41.73 3.51
3759 7785 4.740695 GCGACATAGTCCTGTCTTCATTAC 59.259 45.833 3.07 0.00 42.73 1.89
4306 8338 7.826260 AAAGAAACATTACAACCACAAAGTG 57.174 32.000 0.00 0.00 0.00 3.16
4324 8356 3.221771 AGTGGATGTTTACAGCTTTGCA 58.778 40.909 0.00 0.00 31.98 4.08
4345 8377 5.182950 TGCAATTGTGTTATGGGAACTACTG 59.817 40.000 7.40 0.00 0.00 2.74
4451 8483 7.116948 AGAGTATAATCATACGCATTTGCTGTC 59.883 37.037 2.62 0.00 41.70 3.51
4544 8577 9.230122 CATTATTCCATAATGCATACACCTGTA 57.770 33.333 0.00 0.00 43.74 2.74
5237 9274 7.654022 TCCTTTGTTCCATAACTCTGTTTTT 57.346 32.000 0.00 0.00 36.51 1.94
5361 9404 0.673437 CCCCGATGCACAAAACACTT 59.327 50.000 0.00 0.00 0.00 3.16
5383 9434 7.487509 CACTTATGCAATGATATACTCTCTCCG 59.512 40.741 0.00 0.00 0.00 4.63
5473 9539 7.991460 AGGGAGTAGTATGTAATTAAGCCAAAC 59.009 37.037 0.00 0.00 0.00 2.93
5474 9540 7.991460 GGGAGTAGTATGTAATTAAGCCAAACT 59.009 37.037 0.00 0.00 0.00 2.66
5475 9541 9.043079 GGAGTAGTATGTAATTAAGCCAAACTC 57.957 37.037 0.00 0.00 0.00 3.01
5520 9614 1.538512 CTGATAATGCCCAATGCGAGG 59.461 52.381 0.00 0.00 45.60 4.63
5524 9618 0.106569 AATGCCCAATGCGAGGATGA 60.107 50.000 0.00 0.00 45.60 2.92
5531 9625 2.096496 CCAATGCGAGGATGACAACTTC 59.904 50.000 0.00 0.00 0.00 3.01
5545 9639 7.376072 GGATGACAACTTCGTTTTTCAGTTTAG 59.624 37.037 0.00 0.00 0.00 1.85
5576 9671 3.004315 AGAAAATCGCCGTTTGTGTCAAT 59.996 39.130 0.00 0.00 0.00 2.57
5611 9706 4.201812 CCATGTGTATCAACTAACTTGCCG 60.202 45.833 0.00 0.00 0.00 5.69
5617 9712 2.489971 TCAACTAACTTGCCGTCCTTG 58.510 47.619 0.00 0.00 0.00 3.61
5619 9714 0.107831 ACTAACTTGCCGTCCTTGCA 59.892 50.000 0.00 0.00 36.84 4.08
5632 9727 3.935203 CGTCCTTGCATCACTAGAATTGT 59.065 43.478 0.00 0.00 0.00 2.71
5643 9759 3.740832 CACTAGAATTGTCGTGTGAAGCA 59.259 43.478 0.00 0.00 35.37 3.91
5717 10113 9.911788 ACCTTGAATATTCCATAGCCTATATTG 57.088 33.333 12.90 0.00 0.00 1.90
5718 10114 9.911788 CCTTGAATATTCCATAGCCTATATTGT 57.088 33.333 12.90 0.00 0.00 2.71
5733 10129 7.870588 CCTATATTGTAGGCGTTCTAGAAAC 57.129 40.000 6.78 1.91 35.30 2.78
5734 10130 6.867293 CCTATATTGTAGGCGTTCTAGAAACC 59.133 42.308 6.78 11.90 35.30 3.27
5735 10131 4.546829 ATTGTAGGCGTTCTAGAAACCA 57.453 40.909 21.87 9.77 35.30 3.67
5736 10132 3.587797 TGTAGGCGTTCTAGAAACCAG 57.412 47.619 21.87 10.12 0.00 4.00
5737 10133 2.232941 TGTAGGCGTTCTAGAAACCAGG 59.767 50.000 21.87 3.62 0.00 4.45
5738 10134 0.613777 AGGCGTTCTAGAAACCAGGG 59.386 55.000 21.87 5.08 0.00 4.45
5739 10135 0.323957 GGCGTTCTAGAAACCAGGGT 59.676 55.000 17.18 0.00 0.00 4.34
5740 10136 1.551883 GGCGTTCTAGAAACCAGGGTA 59.448 52.381 17.18 0.00 0.00 3.69
5741 10137 2.169978 GGCGTTCTAGAAACCAGGGTAT 59.830 50.000 17.18 0.00 0.00 2.73
5742 10138 3.455327 GCGTTCTAGAAACCAGGGTATC 58.545 50.000 6.78 0.00 0.00 2.24
5743 10139 3.740452 GCGTTCTAGAAACCAGGGTATCC 60.740 52.174 6.78 0.00 0.00 2.59
5744 10140 3.449737 CGTTCTAGAAACCAGGGTATCCA 59.550 47.826 6.78 0.00 34.83 3.41
5745 10141 4.441634 CGTTCTAGAAACCAGGGTATCCAG 60.442 50.000 6.78 0.00 34.83 3.86
5746 10142 4.620086 TCTAGAAACCAGGGTATCCAGA 57.380 45.455 0.00 0.00 34.83 3.86
5747 10143 4.287552 TCTAGAAACCAGGGTATCCAGAC 58.712 47.826 0.00 0.00 34.83 3.51
5748 10144 3.207044 AGAAACCAGGGTATCCAGACT 57.793 47.619 0.00 0.00 34.83 3.24
5749 10145 3.532102 AGAAACCAGGGTATCCAGACTT 58.468 45.455 0.00 0.00 34.83 3.01
5750 10146 4.695606 AGAAACCAGGGTATCCAGACTTA 58.304 43.478 0.00 0.00 34.83 2.24
5751 10147 4.470304 AGAAACCAGGGTATCCAGACTTAC 59.530 45.833 0.00 0.00 34.83 2.34
5752 10148 3.778622 ACCAGGGTATCCAGACTTACT 57.221 47.619 0.00 0.00 34.83 2.24
5753 10149 4.076175 ACCAGGGTATCCAGACTTACTT 57.924 45.455 0.00 0.00 34.83 2.24
5754 10150 4.436079 ACCAGGGTATCCAGACTTACTTT 58.564 43.478 0.00 0.00 34.83 2.66
5755 10151 4.470304 ACCAGGGTATCCAGACTTACTTTC 59.530 45.833 0.00 0.00 34.83 2.62
5756 10152 4.141688 CCAGGGTATCCAGACTTACTTTCC 60.142 50.000 0.00 0.00 34.83 3.13
5757 10153 4.717280 CAGGGTATCCAGACTTACTTTCCT 59.283 45.833 0.00 0.00 34.83 3.36
5758 10154 4.717280 AGGGTATCCAGACTTACTTTCCTG 59.283 45.833 0.00 0.00 34.83 3.86
5759 10155 4.443621 GGTATCCAGACTTACTTTCCTGC 58.556 47.826 0.00 0.00 0.00 4.85
5760 10156 2.743636 TCCAGACTTACTTTCCTGCG 57.256 50.000 0.00 0.00 0.00 5.18
5761 10157 1.275291 TCCAGACTTACTTTCCTGCGG 59.725 52.381 0.00 0.00 0.00 5.69
5762 10158 1.079503 CAGACTTACTTTCCTGCGGC 58.920 55.000 0.00 0.00 0.00 6.53
5763 10159 0.977395 AGACTTACTTTCCTGCGGCT 59.023 50.000 0.00 0.00 0.00 5.52
5764 10160 1.348036 AGACTTACTTTCCTGCGGCTT 59.652 47.619 0.00 0.00 0.00 4.35
5765 10161 2.565834 AGACTTACTTTCCTGCGGCTTA 59.434 45.455 0.00 0.00 0.00 3.09
5766 10162 3.197983 AGACTTACTTTCCTGCGGCTTAT 59.802 43.478 0.00 0.00 0.00 1.73
5767 10163 3.270877 ACTTACTTTCCTGCGGCTTATG 58.729 45.455 0.00 0.00 0.00 1.90
5768 10164 2.325583 TACTTTCCTGCGGCTTATGG 57.674 50.000 0.00 0.00 0.00 2.74
5769 10165 1.032114 ACTTTCCTGCGGCTTATGGC 61.032 55.000 0.00 0.00 40.90 4.40
5777 10173 2.190578 GGCTTATGGCGTGGCTCT 59.809 61.111 6.49 0.00 42.94 4.09
5778 10174 1.445942 GGCTTATGGCGTGGCTCTA 59.554 57.895 6.49 0.00 42.94 2.43
5779 10175 0.035458 GGCTTATGGCGTGGCTCTAT 59.965 55.000 6.49 0.00 42.94 1.98
5780 10176 1.433534 GCTTATGGCGTGGCTCTATC 58.566 55.000 0.00 0.00 0.00 2.08
5781 10177 1.270305 GCTTATGGCGTGGCTCTATCA 60.270 52.381 0.00 0.00 0.00 2.15
5782 10178 2.806745 GCTTATGGCGTGGCTCTATCAA 60.807 50.000 0.00 0.00 0.00 2.57
5783 10179 2.526304 TATGGCGTGGCTCTATCAAC 57.474 50.000 0.00 0.00 0.00 3.18
5784 10180 0.530650 ATGGCGTGGCTCTATCAACG 60.531 55.000 0.00 0.00 0.00 4.10
5785 10181 1.883084 GGCGTGGCTCTATCAACGG 60.883 63.158 0.00 0.00 0.00 4.44
5786 10182 1.153628 GCGTGGCTCTATCAACGGT 60.154 57.895 0.00 0.00 0.00 4.83
5787 10183 1.146358 GCGTGGCTCTATCAACGGTC 61.146 60.000 0.00 0.00 0.00 4.79
5788 10184 0.456221 CGTGGCTCTATCAACGGTCT 59.544 55.000 0.00 0.00 0.00 3.85
5789 10185 1.799181 CGTGGCTCTATCAACGGTCTG 60.799 57.143 0.00 0.00 0.00 3.51
5790 10186 0.824109 TGGCTCTATCAACGGTCTGG 59.176 55.000 0.00 0.00 0.00 3.86
5791 10187 0.824759 GGCTCTATCAACGGTCTGGT 59.175 55.000 0.00 0.00 0.00 4.00
5792 10188 2.029623 GGCTCTATCAACGGTCTGGTA 58.970 52.381 0.00 0.00 0.00 3.25
5793 10189 2.223758 GGCTCTATCAACGGTCTGGTAC 60.224 54.545 0.00 0.00 0.00 3.34
5794 10190 2.541178 GCTCTATCAACGGTCTGGTACG 60.541 54.545 0.00 0.00 0.00 3.67
5795 10191 2.019249 TCTATCAACGGTCTGGTACGG 58.981 52.381 0.00 0.00 34.70 4.02
5796 10192 0.457035 TATCAACGGTCTGGTACGGC 59.543 55.000 0.00 0.00 32.53 5.68
5797 10193 2.234913 ATCAACGGTCTGGTACGGCC 62.235 60.000 0.00 0.00 37.90 6.13
5798 10194 3.698820 AACGGTCTGGTACGGCCC 61.699 66.667 0.00 0.00 36.04 5.80
5800 10196 4.446413 CGGTCTGGTACGGCCCAC 62.446 72.222 0.00 0.00 36.04 4.61
5801 10197 4.091939 GGTCTGGTACGGCCCACC 62.092 72.222 13.30 13.30 36.04 4.61
5802 10198 3.001406 GTCTGGTACGGCCCACCT 61.001 66.667 19.35 0.00 36.96 4.00
5803 10199 2.203877 TCTGGTACGGCCCACCTT 60.204 61.111 19.35 0.00 36.96 3.50
5804 10200 2.267961 CTGGTACGGCCCACCTTC 59.732 66.667 19.35 0.00 36.96 3.46
5805 10201 2.527123 TGGTACGGCCCACCTTCA 60.527 61.111 19.35 0.02 36.96 3.02
5806 10202 2.119484 CTGGTACGGCCCACCTTCAA 62.119 60.000 19.35 1.67 36.96 2.69
5807 10203 1.673337 GGTACGGCCCACCTTCAAC 60.673 63.158 12.98 0.00 32.98 3.18
5808 10204 1.373812 GTACGGCCCACCTTCAACT 59.626 57.895 0.00 0.00 0.00 3.16
5809 10205 0.250597 GTACGGCCCACCTTCAACTT 60.251 55.000 0.00 0.00 0.00 2.66
5810 10206 0.035739 TACGGCCCACCTTCAACTTC 59.964 55.000 0.00 0.00 0.00 3.01
5811 10207 2.325082 CGGCCCACCTTCAACTTCG 61.325 63.158 0.00 0.00 0.00 3.79
5812 10208 1.971695 GGCCCACCTTCAACTTCGG 60.972 63.158 0.00 0.00 0.00 4.30
5813 10209 2.626780 GCCCACCTTCAACTTCGGC 61.627 63.158 0.00 0.00 0.00 5.54
5814 10210 1.228124 CCCACCTTCAACTTCGGCA 60.228 57.895 0.00 0.00 0.00 5.69
5815 10211 0.821711 CCCACCTTCAACTTCGGCAA 60.822 55.000 0.00 0.00 0.00 4.52
5816 10212 0.593128 CCACCTTCAACTTCGGCAAG 59.407 55.000 0.00 0.00 35.50 4.01
5817 10213 1.593196 CACCTTCAACTTCGGCAAGA 58.407 50.000 4.13 0.00 33.34 3.02
5818 10214 1.264288 CACCTTCAACTTCGGCAAGAC 59.736 52.381 4.13 0.00 33.34 3.01
5819 10215 1.134220 ACCTTCAACTTCGGCAAGACA 60.134 47.619 4.13 0.00 33.34 3.41
5820 10216 1.946768 CCTTCAACTTCGGCAAGACAA 59.053 47.619 4.13 0.00 33.34 3.18
5821 10217 2.031682 CCTTCAACTTCGGCAAGACAAG 60.032 50.000 4.13 0.00 33.34 3.16
5822 10218 2.613026 TCAACTTCGGCAAGACAAGA 57.387 45.000 4.13 0.00 33.34 3.02
5823 10219 2.210116 TCAACTTCGGCAAGACAAGAC 58.790 47.619 4.13 0.00 33.34 3.01
5824 10220 1.264288 CAACTTCGGCAAGACAAGACC 59.736 52.381 4.13 0.00 33.34 3.85
5825 10221 0.250338 ACTTCGGCAAGACAAGACCC 60.250 55.000 4.13 0.00 33.34 4.46
5826 10222 0.035458 CTTCGGCAAGACAAGACCCT 59.965 55.000 0.00 0.00 0.00 4.34
5827 10223 0.034896 TTCGGCAAGACAAGACCCTC 59.965 55.000 0.00 0.00 0.00 4.30
5828 10224 1.738099 CGGCAAGACAAGACCCTCG 60.738 63.158 0.00 0.00 0.00 4.63
5829 10225 2.035442 GGCAAGACAAGACCCTCGC 61.035 63.158 0.00 0.00 0.00 5.03
5830 10226 2.383527 GCAAGACAAGACCCTCGCG 61.384 63.158 0.00 0.00 0.00 5.87
5831 10227 1.289066 CAAGACAAGACCCTCGCGA 59.711 57.895 9.26 9.26 0.00 5.87
5832 10228 0.734253 CAAGACAAGACCCTCGCGAG 60.734 60.000 29.06 29.06 0.00 5.03
5863 10259 4.351938 CGAGGCGGACGACACCAA 62.352 66.667 0.00 0.00 0.00 3.67
5864 10260 2.432628 GAGGCGGACGACACCAAG 60.433 66.667 0.00 0.00 0.00 3.61
5865 10261 2.915659 AGGCGGACGACACCAAGA 60.916 61.111 0.00 0.00 0.00 3.02
5866 10262 2.737376 GGCGGACGACACCAAGAC 60.737 66.667 0.00 0.00 0.00 3.01
5867 10263 2.737376 GCGGACGACACCAAGACC 60.737 66.667 0.00 0.00 0.00 3.85
5868 10264 3.048602 CGGACGACACCAAGACCT 58.951 61.111 0.00 0.00 0.00 3.85
5869 10265 1.080705 CGGACGACACCAAGACCTC 60.081 63.158 0.00 0.00 0.00 3.85
5870 10266 1.292541 GGACGACACCAAGACCTCC 59.707 63.158 0.00 0.00 0.00 4.30
5871 10267 1.080705 GACGACACCAAGACCTCCG 60.081 63.158 0.00 0.00 0.00 4.63
5872 10268 2.261671 CGACACCAAGACCTCCGG 59.738 66.667 0.00 0.00 0.00 5.14
5873 10269 2.273179 CGACACCAAGACCTCCGGA 61.273 63.158 2.93 2.93 0.00 5.14
5874 10270 1.592223 GACACCAAGACCTCCGGAG 59.408 63.158 25.36 25.36 0.00 4.63
5887 10283 2.731374 CGGAGGGAGCGGAGATTC 59.269 66.667 0.00 0.00 0.00 2.52
5888 10284 2.862223 CGGAGGGAGCGGAGATTCC 61.862 68.421 0.00 0.00 32.99 3.01
5889 10285 1.458588 GGAGGGAGCGGAGATTCCT 60.459 63.158 0.00 0.00 33.30 3.36
5890 10286 0.178958 GGAGGGAGCGGAGATTCCTA 60.179 60.000 0.00 0.00 33.30 2.94
5891 10287 1.551329 GGAGGGAGCGGAGATTCCTAT 60.551 57.143 0.00 0.00 33.30 2.57
5892 10288 1.548269 GAGGGAGCGGAGATTCCTATG 59.452 57.143 0.00 0.00 33.30 2.23
5893 10289 0.036858 GGGAGCGGAGATTCCTATGC 60.037 60.000 0.00 0.00 33.30 3.14
5894 10290 0.681733 GGAGCGGAGATTCCTATGCA 59.318 55.000 0.00 0.00 33.30 3.96
5895 10291 1.070758 GGAGCGGAGATTCCTATGCAA 59.929 52.381 0.00 0.00 33.30 4.08
5896 10292 2.411904 GAGCGGAGATTCCTATGCAAG 58.588 52.381 0.00 0.00 33.30 4.01
5897 10293 0.871057 GCGGAGATTCCTATGCAAGC 59.129 55.000 0.00 0.00 33.30 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 6.183360 GGACACTAGTCTACAGTAAGAAGTCG 60.183 46.154 0.00 0.00 44.36 4.18
65 66 0.326618 GGGAGAGGGAGATGGAACCA 60.327 60.000 0.00 0.00 0.00 3.67
478 479 4.023279 CGATCCTGTTCACATAGAGGAGAG 60.023 50.000 0.00 0.00 38.02 3.20
498 499 6.094325 TCACAACAAAAAGAACCAACTACGAT 59.906 34.615 0.00 0.00 0.00 3.73
597 769 8.873830 AGAAACATCTCACTGAAAATACGTATG 58.126 33.333 9.24 0.00 0.00 2.39
633 805 7.396418 ACGGAAGTATTTGGAAGTTGGTATAA 58.604 34.615 0.00 0.00 46.88 0.98
679 855 8.337739 GGATATAGGTAGGAACTAGAAGGATCA 58.662 40.741 0.00 0.00 44.14 2.92
693 869 4.835615 AGCACTTCACTGGATATAGGTAGG 59.164 45.833 0.00 0.00 0.00 3.18
742 918 8.601845 AAAAGGAAATATTTGCAAGTTGGTAC 57.398 30.769 20.17 0.00 0.00 3.34
837 1013 5.731278 CAGAACATAGATGCATTACGTGTG 58.269 41.667 0.00 0.00 0.00 3.82
877 1053 8.706322 TGGTAGAGAAGTATATCACAAGCATA 57.294 34.615 0.00 0.00 0.00 3.14
928 1104 7.386573 CCCACCAAACGCTTAAATAAAAGATTT 59.613 33.333 0.00 0.00 0.00 2.17
1164 1347 6.366877 GCAAACAACTCATACAAATCAGCAAT 59.633 34.615 0.00 0.00 0.00 3.56
1339 1522 0.111061 TCTTGTGCTGCACCCTTGAT 59.889 50.000 28.17 0.00 32.73 2.57
1398 1581 3.007182 CCAACACTTCCAGCCAATGAAAT 59.993 43.478 0.00 0.00 0.00 2.17
1696 1891 2.170187 AGCCACTATCCTCTTTGCAGAG 59.830 50.000 0.00 0.00 45.79 3.35
2001 2197 7.733630 ATGTAGCGTACTGCATAAATCGACTTA 60.734 37.037 11.30 0.00 46.06 2.24
2445 4030 9.710900 TCAATATGTATGGACACTTATGCTTAG 57.289 33.333 0.00 0.00 38.76 2.18
2717 4302 9.978044 TGTGATATCTTAGTTTCTCTGATGATG 57.022 33.333 3.98 0.00 0.00 3.07
2781 4366 1.539388 CCAACGCTGAGGCATTGTTTA 59.461 47.619 0.00 0.00 39.61 2.01
2816 4401 1.556911 ACCTGAATGCAAGTCGGATCT 59.443 47.619 10.42 0.00 40.36 2.75
2828 4413 5.970592 TCATCTGACTAGAACACCTGAATG 58.029 41.667 0.00 0.00 36.32 2.67
3003 4588 5.086058 GGTCTAAACAATGTACATGCAACG 58.914 41.667 9.63 0.00 0.00 4.10
3134 7155 5.047188 AGTTGCCCAACGAAAACAATAAAG 58.953 37.500 5.59 0.00 45.50 1.85
3161 7184 5.129634 TGTTAGTCATGAAAACAAGCAGGA 58.870 37.500 18.00 0.00 30.54 3.86
3591 7616 3.764218 ACTCCTCTTTCTCGACCTTACA 58.236 45.455 0.00 0.00 0.00 2.41
3751 7777 8.709386 AGACTAGCAGTAATTGTGTAATGAAG 57.291 34.615 0.00 0.00 0.00 3.02
3759 7785 7.986562 TCAGTACTAGACTAGCAGTAATTGTG 58.013 38.462 9.52 0.00 35.64 3.33
3967 7998 1.666888 GCACAAACATTTCCTCAGGCG 60.667 52.381 0.00 0.00 0.00 5.52
4306 8338 4.990426 ACAATTGCAAAGCTGTAAACATCC 59.010 37.500 1.71 0.00 30.44 3.51
4324 8356 5.183140 GTGCAGTAGTTCCCATAACACAATT 59.817 40.000 0.00 0.00 0.00 2.32
4345 8377 4.192317 CCTCAAAGGGTAGTCTATTGTGC 58.808 47.826 0.00 0.00 0.00 4.57
5053 9086 5.109903 CAAAAGGTTACTCAGATCTACCCG 58.890 45.833 7.82 0.00 0.00 5.28
5250 9293 3.963374 ACAGACTCAGGATAGCAGCATTA 59.037 43.478 0.00 0.00 0.00 1.90
5361 9404 6.095580 GGACGGAGAGAGTATATCATTGCATA 59.904 42.308 0.00 0.00 0.00 3.14
5377 9420 3.939066 ACACTTATTTTGGGACGGAGAG 58.061 45.455 0.00 0.00 0.00 3.20
5383 9434 7.058023 AGGGTTAAAACACTTATTTTGGGAC 57.942 36.000 0.00 0.00 40.45 4.46
5445 9511 7.073854 TGGCTTAATTACATACTACTCCCTCT 58.926 38.462 0.00 0.00 0.00 3.69
5507 9574 1.451927 GTCATCCTCGCATTGGGCA 60.452 57.895 0.00 0.00 45.17 5.36
5531 9625 8.442605 TCTGTCAAAAACTAAACTGAAAAACG 57.557 30.769 0.00 0.00 0.00 3.60
5545 9639 3.368495 ACGGCGATTTTCTGTCAAAAAC 58.632 40.909 16.62 0.00 31.35 2.43
5585 9680 5.335583 GCAAGTTAGTTGATACACATGGCAA 60.336 40.000 3.69 0.00 38.60 4.52
5611 9706 4.033358 CGACAATTCTAGTGATGCAAGGAC 59.967 45.833 0.00 0.00 0.00 3.85
5617 9712 3.926527 TCACACGACAATTCTAGTGATGC 59.073 43.478 9.76 0.00 37.95 3.91
5619 9714 4.627467 GCTTCACACGACAATTCTAGTGAT 59.373 41.667 9.76 0.00 34.86 3.06
5643 9759 0.463620 AGGCGTTGTTTGCAAATGGT 59.536 45.000 16.21 0.00 36.22 3.55
5683 10079 4.843728 TGGAATATTCAAGGTCAGGTGAC 58.156 43.478 17.07 1.17 44.04 3.67
5716 10112 2.232941 CCTGGTTTCTAGAACGCCTACA 59.767 50.000 19.98 7.78 0.00 2.74
5717 10113 2.418334 CCCTGGTTTCTAGAACGCCTAC 60.418 54.545 19.98 10.16 0.00 3.18
5718 10114 1.829222 CCCTGGTTTCTAGAACGCCTA 59.171 52.381 19.98 10.06 0.00 3.93
5719 10115 0.613777 CCCTGGTTTCTAGAACGCCT 59.386 55.000 19.98 0.00 0.00 5.52
5720 10116 0.323957 ACCCTGGTTTCTAGAACGCC 59.676 55.000 4.18 11.09 0.00 5.68
5721 10117 3.455327 GATACCCTGGTTTCTAGAACGC 58.545 50.000 4.18 1.13 0.00 4.84
5722 10118 3.449737 TGGATACCCTGGTTTCTAGAACG 59.550 47.826 4.18 0.00 0.00 3.95
5723 10119 4.715297 TCTGGATACCCTGGTTTCTAGAAC 59.285 45.833 16.54 0.70 39.32 3.01
5724 10120 4.715297 GTCTGGATACCCTGGTTTCTAGAA 59.285 45.833 19.20 0.00 41.92 2.10
5725 10121 4.016479 AGTCTGGATACCCTGGTTTCTAGA 60.016 45.833 15.42 15.42 39.70 2.43
5726 10122 4.290942 AGTCTGGATACCCTGGTTTCTAG 58.709 47.826 12.01 12.01 36.54 2.43
5727 10123 4.348020 AGTCTGGATACCCTGGTTTCTA 57.652 45.455 6.71 0.60 32.78 2.10
5728 10124 3.207044 AGTCTGGATACCCTGGTTTCT 57.793 47.619 6.71 0.00 32.78 2.52
5729 10125 4.470304 AGTAAGTCTGGATACCCTGGTTTC 59.530 45.833 0.00 0.00 32.78 2.78
5730 10126 4.436079 AGTAAGTCTGGATACCCTGGTTT 58.564 43.478 0.00 0.00 32.78 3.27
5731 10127 4.076175 AGTAAGTCTGGATACCCTGGTT 57.924 45.455 0.00 0.00 32.78 3.67
5732 10128 3.778622 AGTAAGTCTGGATACCCTGGT 57.221 47.619 0.00 0.00 32.78 4.00
5733 10129 4.141688 GGAAAGTAAGTCTGGATACCCTGG 60.142 50.000 0.00 0.00 32.78 4.45
5734 10130 4.717280 AGGAAAGTAAGTCTGGATACCCTG 59.283 45.833 0.00 0.00 0.00 4.45
5735 10131 4.717280 CAGGAAAGTAAGTCTGGATACCCT 59.283 45.833 0.00 0.00 0.00 4.34
5736 10132 4.683671 GCAGGAAAGTAAGTCTGGATACCC 60.684 50.000 0.00 0.00 0.00 3.69
5737 10133 4.443621 GCAGGAAAGTAAGTCTGGATACC 58.556 47.826 0.00 0.00 0.00 2.73
5738 10134 4.113354 CGCAGGAAAGTAAGTCTGGATAC 58.887 47.826 0.00 0.00 0.00 2.24
5739 10135 4.386867 CGCAGGAAAGTAAGTCTGGATA 57.613 45.455 0.00 0.00 0.00 2.59
5740 10136 3.252974 CGCAGGAAAGTAAGTCTGGAT 57.747 47.619 0.00 0.00 0.00 3.41
5741 10137 2.743636 CGCAGGAAAGTAAGTCTGGA 57.256 50.000 0.00 0.00 0.00 3.86
5756 10152 3.576356 CCACGCCATAAGCCGCAG 61.576 66.667 0.00 0.00 38.78 5.18
5759 10155 2.363711 TAGAGCCACGCCATAAGCCG 62.364 60.000 0.00 0.00 38.78 5.52
5760 10156 0.035458 ATAGAGCCACGCCATAAGCC 59.965 55.000 0.00 0.00 38.78 4.35
5761 10157 1.270305 TGATAGAGCCACGCCATAAGC 60.270 52.381 0.00 0.00 38.52 3.09
5762 10158 2.802816 GTTGATAGAGCCACGCCATAAG 59.197 50.000 0.00 0.00 0.00 1.73
5763 10159 2.801699 CGTTGATAGAGCCACGCCATAA 60.802 50.000 0.00 0.00 0.00 1.90
5764 10160 1.269569 CGTTGATAGAGCCACGCCATA 60.270 52.381 0.00 0.00 0.00 2.74
5765 10161 0.530650 CGTTGATAGAGCCACGCCAT 60.531 55.000 0.00 0.00 0.00 4.40
5766 10162 1.153647 CGTTGATAGAGCCACGCCA 60.154 57.895 0.00 0.00 0.00 5.69
5767 10163 1.883084 CCGTTGATAGAGCCACGCC 60.883 63.158 0.00 0.00 0.00 5.68
5768 10164 1.146358 GACCGTTGATAGAGCCACGC 61.146 60.000 0.00 0.00 0.00 5.34
5769 10165 0.456221 AGACCGTTGATAGAGCCACG 59.544 55.000 0.00 0.00 0.00 4.94
5770 10166 1.471676 CCAGACCGTTGATAGAGCCAC 60.472 57.143 0.00 0.00 0.00 5.01
5771 10167 0.824109 CCAGACCGTTGATAGAGCCA 59.176 55.000 0.00 0.00 0.00 4.75
5772 10168 0.824759 ACCAGACCGTTGATAGAGCC 59.175 55.000 0.00 0.00 0.00 4.70
5773 10169 2.541178 CGTACCAGACCGTTGATAGAGC 60.541 54.545 0.00 0.00 0.00 4.09
5774 10170 2.033049 CCGTACCAGACCGTTGATAGAG 59.967 54.545 0.00 0.00 0.00 2.43
5775 10171 2.019249 CCGTACCAGACCGTTGATAGA 58.981 52.381 0.00 0.00 0.00 1.98
5776 10172 1.535437 GCCGTACCAGACCGTTGATAG 60.535 57.143 0.00 0.00 0.00 2.08
5777 10173 0.457035 GCCGTACCAGACCGTTGATA 59.543 55.000 0.00 0.00 0.00 2.15
5778 10174 1.217244 GCCGTACCAGACCGTTGAT 59.783 57.895 0.00 0.00 0.00 2.57
5779 10175 2.652530 GCCGTACCAGACCGTTGA 59.347 61.111 0.00 0.00 0.00 3.18
5780 10176 2.433664 GGCCGTACCAGACCGTTG 60.434 66.667 0.00 0.00 38.86 4.10
5781 10177 3.698820 GGGCCGTACCAGACCGTT 61.699 66.667 0.00 0.00 42.05 4.44
5783 10179 4.446413 GTGGGCCGTACCAGACCG 62.446 72.222 0.00 0.00 42.20 4.79
5784 10180 4.091939 GGTGGGCCGTACCAGACC 62.092 72.222 19.79 0.00 42.20 3.85
5785 10181 2.517484 GAAGGTGGGCCGTACCAGAC 62.517 65.000 24.73 13.87 42.20 3.51
5786 10182 2.203877 AAGGTGGGCCGTACCAGA 60.204 61.111 24.73 0.00 42.20 3.86
5787 10183 2.119484 TTGAAGGTGGGCCGTACCAG 62.119 60.000 24.73 0.00 42.20 4.00
5788 10184 2.148052 TTGAAGGTGGGCCGTACCA 61.148 57.895 24.73 2.97 42.05 3.25
5789 10185 1.673337 GTTGAAGGTGGGCCGTACC 60.673 63.158 17.67 17.67 40.50 3.34
5790 10186 0.250597 AAGTTGAAGGTGGGCCGTAC 60.251 55.000 0.00 0.00 40.50 3.67
5791 10187 0.035739 GAAGTTGAAGGTGGGCCGTA 59.964 55.000 0.00 0.00 40.50 4.02
5792 10188 1.228154 GAAGTTGAAGGTGGGCCGT 60.228 57.895 0.00 0.00 40.50 5.68
5793 10189 2.325082 CGAAGTTGAAGGTGGGCCG 61.325 63.158 0.00 0.00 40.50 6.13
5794 10190 1.971695 CCGAAGTTGAAGGTGGGCC 60.972 63.158 0.00 0.00 0.00 5.80
5795 10191 2.626780 GCCGAAGTTGAAGGTGGGC 61.627 63.158 0.00 0.00 0.00 5.36
5796 10192 0.821711 TTGCCGAAGTTGAAGGTGGG 60.822 55.000 0.00 0.00 0.00 4.61
5797 10193 0.593128 CTTGCCGAAGTTGAAGGTGG 59.407 55.000 0.00 0.00 0.00 4.61
5798 10194 1.264288 GTCTTGCCGAAGTTGAAGGTG 59.736 52.381 0.00 0.00 0.00 4.00
5799 10195 1.134220 TGTCTTGCCGAAGTTGAAGGT 60.134 47.619 0.00 0.00 0.00 3.50
5800 10196 1.593196 TGTCTTGCCGAAGTTGAAGG 58.407 50.000 0.00 0.00 0.00 3.46
5801 10197 2.872245 TCTTGTCTTGCCGAAGTTGAAG 59.128 45.455 0.00 0.00 0.00 3.02
5802 10198 2.612212 GTCTTGTCTTGCCGAAGTTGAA 59.388 45.455 0.00 0.00 0.00 2.69
5803 10199 2.210116 GTCTTGTCTTGCCGAAGTTGA 58.790 47.619 0.00 0.00 0.00 3.18
5804 10200 1.264288 GGTCTTGTCTTGCCGAAGTTG 59.736 52.381 0.00 0.00 0.00 3.16
5805 10201 1.594331 GGTCTTGTCTTGCCGAAGTT 58.406 50.000 0.00 0.00 0.00 2.66
5806 10202 0.250338 GGGTCTTGTCTTGCCGAAGT 60.250 55.000 0.00 0.00 0.00 3.01
5807 10203 0.035458 AGGGTCTTGTCTTGCCGAAG 59.965 55.000 0.00 0.00 0.00 3.79
5808 10204 0.034896 GAGGGTCTTGTCTTGCCGAA 59.965 55.000 0.00 0.00 0.00 4.30
5809 10205 1.671742 GAGGGTCTTGTCTTGCCGA 59.328 57.895 0.00 0.00 0.00 5.54
5810 10206 1.738099 CGAGGGTCTTGTCTTGCCG 60.738 63.158 0.00 0.00 0.00 5.69
5811 10207 2.035442 GCGAGGGTCTTGTCTTGCC 61.035 63.158 0.00 0.00 35.05 4.52
5812 10208 2.383527 CGCGAGGGTCTTGTCTTGC 61.384 63.158 0.00 0.00 37.12 4.01
5813 10209 0.734253 CTCGCGAGGGTCTTGTCTTG 60.734 60.000 28.40 0.00 0.00 3.02
5814 10210 1.587054 CTCGCGAGGGTCTTGTCTT 59.413 57.895 28.40 0.00 0.00 3.01
5815 10211 2.344203 CCTCGCGAGGGTCTTGTCT 61.344 63.158 41.47 0.00 44.87 3.41
5816 10212 2.182030 CCTCGCGAGGGTCTTGTC 59.818 66.667 41.47 0.00 44.87 3.18
5846 10242 4.351938 TTGGTGTCGTCCGCCTCG 62.352 66.667 8.49 0.00 44.58 4.63
5847 10243 2.432628 CTTGGTGTCGTCCGCCTC 60.433 66.667 8.49 0.00 44.58 4.70
5848 10244 2.915659 TCTTGGTGTCGTCCGCCT 60.916 61.111 8.49 0.00 44.58 5.52
5849 10245 2.737376 GTCTTGGTGTCGTCCGCC 60.737 66.667 1.25 1.25 44.53 6.13
5850 10246 2.737376 GGTCTTGGTGTCGTCCGC 60.737 66.667 0.00 0.00 0.00 5.54
5851 10247 1.080705 GAGGTCTTGGTGTCGTCCG 60.081 63.158 0.00 0.00 0.00 4.79
5852 10248 1.292541 GGAGGTCTTGGTGTCGTCC 59.707 63.158 0.00 0.00 33.29 4.79
5853 10249 1.080705 CGGAGGTCTTGGTGTCGTC 60.081 63.158 0.00 0.00 0.00 4.20
5854 10250 3.048602 CGGAGGTCTTGGTGTCGT 58.951 61.111 0.00 0.00 0.00 4.34
5869 10265 2.840102 AATCTCCGCTCCCTCCGG 60.840 66.667 0.00 0.00 46.88 5.14
5870 10266 2.731374 GAATCTCCGCTCCCTCCG 59.269 66.667 0.00 0.00 0.00 4.63
5871 10267 0.178958 TAGGAATCTCCGCTCCCTCC 60.179 60.000 0.00 0.00 42.75 4.30
5872 10268 1.548269 CATAGGAATCTCCGCTCCCTC 59.452 57.143 0.00 0.00 42.75 4.30
5873 10269 1.638529 CATAGGAATCTCCGCTCCCT 58.361 55.000 0.00 0.00 42.75 4.20
5874 10270 0.036858 GCATAGGAATCTCCGCTCCC 60.037 60.000 0.00 0.00 42.75 4.30
5875 10271 0.681733 TGCATAGGAATCTCCGCTCC 59.318 55.000 0.00 0.00 42.75 4.70
5876 10272 2.411904 CTTGCATAGGAATCTCCGCTC 58.588 52.381 0.00 0.00 42.75 5.03
5877 10273 1.542108 GCTTGCATAGGAATCTCCGCT 60.542 52.381 0.00 0.00 42.75 5.52
5878 10274 0.871057 GCTTGCATAGGAATCTCCGC 59.129 55.000 0.00 0.00 42.75 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.