Multiple sequence alignment - TraesCS6A01G207400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G207400 chr6A 100.000 3079 0 0 1 3079 369654242 369657320 0.000000e+00 5686.0
1 TraesCS6A01G207400 chr6A 88.889 324 32 3 310 629 56140792 56140469 2.220000e-106 396.0
2 TraesCS6A01G207400 chr6A 86.857 175 17 5 457 629 382760234 382760404 1.130000e-44 191.0
3 TraesCS6A01G207400 chr6A 86.111 108 13 2 173 279 313093393 313093287 6.980000e-22 115.0
4 TraesCS6A01G207400 chr6A 91.525 59 5 0 274 332 362033425 362033483 7.080000e-12 82.4
5 TraesCS6A01G207400 chr6A 89.231 65 6 1 269 332 362075125 362075189 2.550000e-11 80.5
6 TraesCS6A01G207400 chr6A 92.308 52 3 1 271 321 56140849 56140798 4.260000e-09 73.1
7 TraesCS6A01G207400 chr6A 93.478 46 3 0 351 396 507075646 507075601 5.510000e-08 69.4
8 TraesCS6A01G207400 chr2A 97.683 2460 50 2 626 3079 753951602 753954060 0.000000e+00 4220.0
9 TraesCS6A01G207400 chr2A 86.207 290 29 5 1 279 470679259 470678970 1.390000e-78 303.0
10 TraesCS6A01G207400 chr2A 92.763 152 11 0 436 587 533139927 533140078 1.440000e-53 220.0
11 TraesCS6A01G207400 chr2A 91.391 151 13 0 437 587 533132690 533132840 1.120000e-49 207.0
12 TraesCS6A01G207400 chr2A 84.722 72 8 3 322 393 55889801 55889869 5.510000e-08 69.4
13 TraesCS6A01G207400 chr3A 97.475 2455 55 2 631 3079 713795704 713798157 0.000000e+00 4183.0
14 TraesCS6A01G207400 chr3A 97.393 2455 58 1 631 3079 725985801 725988255 0.000000e+00 4174.0
15 TraesCS6A01G207400 chr3A 96.638 2469 63 2 631 3079 699770276 699772744 0.000000e+00 4082.0
16 TraesCS6A01G207400 chr3A 91.447 152 13 0 436 587 487169394 487169243 3.110000e-50 209.0
17 TraesCS6A01G207400 chr3A 90.789 152 14 0 436 587 487243569 487243418 1.450000e-48 204.0
18 TraesCS6A01G207400 chr3A 95.349 43 2 0 351 393 437010066 437010024 5.510000e-08 69.4
19 TraesCS6A01G207400 chr1A 97.515 2455 46 3 631 3079 530775325 530772880 0.000000e+00 4181.0
20 TraesCS6A01G207400 chr1A 96.991 2459 50 5 627 3079 13720043 13722483 0.000000e+00 4109.0
21 TraesCS6A01G207400 chr1A 96.782 2455 55 3 631 3079 241984782 241987218 0.000000e+00 4074.0
22 TraesCS6A01G207400 chr1A 91.205 307 25 2 325 629 79770448 79770142 1.710000e-112 416.0
23 TraesCS6A01G207400 chr1A 89.508 305 28 3 310 610 79840046 79839742 1.730000e-102 383.0
24 TraesCS6A01G207400 chr1A 91.525 59 5 0 274 332 477517102 477517044 7.080000e-12 82.4
25 TraesCS6A01G207400 chr5A 96.874 2463 63 1 631 3079 9494742 9492280 0.000000e+00 4109.0
26 TraesCS6A01G207400 chr5A 90.769 65 5 1 269 332 524491624 524491688 5.470000e-13 86.1
27 TraesCS6A01G207400 chr7A 98.013 1963 38 1 1117 3079 107350007 107351968 0.000000e+00 3408.0
28 TraesCS6A01G207400 chr7A 91.525 59 5 0 338 396 250684363 250684305 7.080000e-12 82.4
29 TraesCS6A01G207400 chr7A 90.476 63 5 1 269 330 415875836 415875898 7.080000e-12 82.4
30 TraesCS6A01G207400 chr7A 90.476 63 5 1 269 330 415883914 415883976 7.080000e-12 82.4
31 TraesCS6A01G207400 chr1D 94.232 2011 101 9 631 2630 481961641 481959635 0.000000e+00 3057.0
32 TraesCS6A01G207400 chr7D 94.033 2011 104 10 631 2630 135862942 135864947 0.000000e+00 3035.0
33 TraesCS6A01G207400 chr2B 92.029 2070 126 24 631 2684 794527295 794529341 0.000000e+00 2872.0
34 TraesCS6A01G207400 chrUn 98.407 565 8 1 2515 3079 305973244 305972681 0.000000e+00 992.0
35 TraesCS6A01G207400 chrUn 98.407 565 8 1 2515 3079 359036840 359036277 0.000000e+00 992.0
36 TraesCS6A01G207400 chrUn 89.231 65 6 1 269 332 82968318 82968382 2.550000e-11 80.5
37 TraesCS6A01G207400 chr4A 88.017 726 70 14 627 1345 693356868 693356153 0.000000e+00 843.0
38 TraesCS6A01G207400 chr4A 89.506 324 28 5 309 629 429012974 429013294 3.700000e-109 405.0
39 TraesCS6A01G207400 chr4A 86.713 143 15 4 139 279 427042508 427042648 4.110000e-34 156.0
40 TraesCS6A01G207400 chr4A 92.424 66 4 1 268 332 132679140 132679205 3.270000e-15 93.5
41 TraesCS6A01G207400 chr3D 87.088 728 72 14 633 1345 468666174 468665454 0.000000e+00 804.0
42 TraesCS6A01G207400 chr5D 94.340 53 3 0 344 396 179523021 179522969 7.080000e-12 82.4
43 TraesCS6A01G207400 chr2D 100.000 31 0 0 183 213 10972278 10972308 1.190000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G207400 chr6A 369654242 369657320 3078 False 5686 5686 100.000 1 3079 1 chr6A.!!$F3 3078
1 TraesCS6A01G207400 chr2A 753951602 753954060 2458 False 4220 4220 97.683 626 3079 1 chr2A.!!$F4 2453
2 TraesCS6A01G207400 chr3A 713795704 713798157 2453 False 4183 4183 97.475 631 3079 1 chr3A.!!$F2 2448
3 TraesCS6A01G207400 chr3A 725985801 725988255 2454 False 4174 4174 97.393 631 3079 1 chr3A.!!$F3 2448
4 TraesCS6A01G207400 chr3A 699770276 699772744 2468 False 4082 4082 96.638 631 3079 1 chr3A.!!$F1 2448
5 TraesCS6A01G207400 chr1A 530772880 530775325 2445 True 4181 4181 97.515 631 3079 1 chr1A.!!$R4 2448
6 TraesCS6A01G207400 chr1A 13720043 13722483 2440 False 4109 4109 96.991 627 3079 1 chr1A.!!$F1 2452
7 TraesCS6A01G207400 chr1A 241984782 241987218 2436 False 4074 4074 96.782 631 3079 1 chr1A.!!$F2 2448
8 TraesCS6A01G207400 chr5A 9492280 9494742 2462 True 4109 4109 96.874 631 3079 1 chr5A.!!$R1 2448
9 TraesCS6A01G207400 chr7A 107350007 107351968 1961 False 3408 3408 98.013 1117 3079 1 chr7A.!!$F1 1962
10 TraesCS6A01G207400 chr1D 481959635 481961641 2006 True 3057 3057 94.232 631 2630 1 chr1D.!!$R1 1999
11 TraesCS6A01G207400 chr7D 135862942 135864947 2005 False 3035 3035 94.033 631 2630 1 chr7D.!!$F1 1999
12 TraesCS6A01G207400 chr2B 794527295 794529341 2046 False 2872 2872 92.029 631 2684 1 chr2B.!!$F1 2053
13 TraesCS6A01G207400 chrUn 305972681 305973244 563 True 992 992 98.407 2515 3079 1 chrUn.!!$R1 564
14 TraesCS6A01G207400 chrUn 359036277 359036840 563 True 992 992 98.407 2515 3079 1 chrUn.!!$R2 564
15 TraesCS6A01G207400 chr4A 693356153 693356868 715 True 843 843 88.017 627 1345 1 chr4A.!!$R1 718
16 TraesCS6A01G207400 chr3D 468665454 468666174 720 True 804 804 87.088 633 1345 1 chr3D.!!$R1 712

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 95 0.036294 CGGGAAGAGGTCAGGGAAAC 60.036 60.0 0.00 0.0 0.00 2.78 F
119 120 0.038159 CCAGGACGAAGGTGTGTCTC 60.038 60.0 0.00 0.0 35.45 3.36 F
438 439 0.042581 TCAGTGGCTAGATGGTGGGA 59.957 55.0 0.00 0.0 0.00 4.37 F
556 557 0.105778 GGGAGCTCGAGAATGGGAAG 59.894 60.0 18.75 0.0 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1188 1212 2.557869 TCTATAGTGGTGCCAGGGTTT 58.442 47.619 0.00 0.00 0.00 3.27 R
1906 1969 2.943690 CTGCCACAATTCTCCTCATGAG 59.056 50.000 16.24 16.24 42.90 2.90 R
2076 2139 3.261643 TCCATCTGCTTCTGCTTGAACTA 59.738 43.478 0.00 0.00 40.48 2.24 R
2898 2976 4.834406 AGGATGAGGTGGAGTAGGATTA 57.166 45.455 0.00 0.00 0.00 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.937193 CTCAAGGGAGAGCAGCAG 57.063 61.111 0.00 0.00 44.26 4.24
20 21 2.284824 CTCAAGGGAGAGCAGCAGA 58.715 57.895 0.00 0.00 44.26 4.26
21 22 0.176219 CTCAAGGGAGAGCAGCAGAG 59.824 60.000 0.00 0.00 44.26 3.35
22 23 1.221293 CAAGGGAGAGCAGCAGAGG 59.779 63.158 0.00 0.00 0.00 3.69
23 24 1.994507 AAGGGAGAGCAGCAGAGGG 60.995 63.158 0.00 0.00 0.00 4.30
24 25 4.173924 GGGAGAGCAGCAGAGGGC 62.174 72.222 0.00 0.00 45.30 5.19
33 34 3.745803 GCAGAGGGCAACAGCAGC 61.746 66.667 0.00 0.00 43.97 5.25
34 35 2.281970 CAGAGGGCAACAGCAGCA 60.282 61.111 0.00 0.00 39.74 4.41
35 36 2.282040 AGAGGGCAACAGCAGCAC 60.282 61.111 0.00 0.00 39.74 4.40
37 38 2.596631 AGGGCAACAGCAGCACTG 60.597 61.111 5.30 5.30 45.67 3.66
46 47 1.906253 AGCAGCACTGAGGAGATGG 59.094 57.895 0.81 0.00 0.00 3.51
47 48 0.908656 AGCAGCACTGAGGAGATGGT 60.909 55.000 0.81 0.00 0.00 3.55
48 49 0.743701 GCAGCACTGAGGAGATGGTG 60.744 60.000 0.81 0.00 43.15 4.17
49 50 0.107800 CAGCACTGAGGAGATGGTGG 60.108 60.000 0.00 0.00 38.01 4.61
50 51 0.546267 AGCACTGAGGAGATGGTGGT 60.546 55.000 0.00 0.00 35.91 4.16
51 52 0.392193 GCACTGAGGAGATGGTGGTG 60.392 60.000 0.00 0.00 0.00 4.17
52 53 0.251354 CACTGAGGAGATGGTGGTGG 59.749 60.000 0.00 0.00 0.00 4.61
53 54 0.178891 ACTGAGGAGATGGTGGTGGT 60.179 55.000 0.00 0.00 0.00 4.16
54 55 0.539051 CTGAGGAGATGGTGGTGGTC 59.461 60.000 0.00 0.00 0.00 4.02
55 56 0.178906 TGAGGAGATGGTGGTGGTCA 60.179 55.000 0.00 0.00 0.00 4.02
56 57 0.984230 GAGGAGATGGTGGTGGTCAA 59.016 55.000 0.00 0.00 0.00 3.18
57 58 1.351017 GAGGAGATGGTGGTGGTCAAA 59.649 52.381 0.00 0.00 0.00 2.69
58 59 1.073923 AGGAGATGGTGGTGGTCAAAC 59.926 52.381 0.00 0.00 0.00 2.93
59 60 1.156736 GAGATGGTGGTGGTCAAACG 58.843 55.000 0.00 0.00 0.00 3.60
60 61 0.762418 AGATGGTGGTGGTCAAACGA 59.238 50.000 0.00 0.00 0.00 3.85
61 62 1.156736 GATGGTGGTGGTCAAACGAG 58.843 55.000 0.00 0.00 0.00 4.18
62 63 0.250727 ATGGTGGTGGTCAAACGAGG 60.251 55.000 0.00 0.00 0.00 4.63
63 64 2.258726 GGTGGTGGTCAAACGAGGC 61.259 63.158 0.00 0.00 0.00 4.70
64 65 1.525077 GTGGTGGTCAAACGAGGCA 60.525 57.895 0.00 0.00 0.00 4.75
65 66 1.227823 TGGTGGTCAAACGAGGCAG 60.228 57.895 0.00 0.00 0.00 4.85
66 67 1.966451 GGTGGTCAAACGAGGCAGG 60.966 63.158 0.00 0.00 0.00 4.85
67 68 1.966451 GTGGTCAAACGAGGCAGGG 60.966 63.158 0.00 0.00 0.00 4.45
68 69 3.056328 GGTCAAACGAGGCAGGGC 61.056 66.667 0.00 0.00 0.00 5.19
85 86 4.003788 CCACACGCGGGAAGAGGT 62.004 66.667 19.19 0.00 0.00 3.85
86 87 2.432628 CACACGCGGGAAGAGGTC 60.433 66.667 19.19 0.00 0.00 3.85
87 88 2.915659 ACACGCGGGAAGAGGTCA 60.916 61.111 19.19 0.00 0.00 4.02
88 89 2.125912 CACGCGGGAAGAGGTCAG 60.126 66.667 12.47 0.00 0.00 3.51
89 90 3.382832 ACGCGGGAAGAGGTCAGG 61.383 66.667 12.47 0.00 0.00 3.86
90 91 4.148825 CGCGGGAAGAGGTCAGGG 62.149 72.222 0.00 0.00 0.00 4.45
91 92 2.683933 GCGGGAAGAGGTCAGGGA 60.684 66.667 0.00 0.00 0.00 4.20
92 93 2.291043 GCGGGAAGAGGTCAGGGAA 61.291 63.158 0.00 0.00 0.00 3.97
93 94 1.838073 GCGGGAAGAGGTCAGGGAAA 61.838 60.000 0.00 0.00 0.00 3.13
94 95 0.036294 CGGGAAGAGGTCAGGGAAAC 60.036 60.000 0.00 0.00 0.00 2.78
106 107 4.018409 GGAAACCATGGCCAGGAC 57.982 61.111 21.32 12.49 0.00 3.85
107 108 2.046285 GGAAACCATGGCCAGGACG 61.046 63.158 21.32 5.40 0.00 4.79
108 109 1.002624 GAAACCATGGCCAGGACGA 60.003 57.895 21.32 0.00 0.00 4.20
109 110 0.608035 GAAACCATGGCCAGGACGAA 60.608 55.000 21.32 0.00 0.00 3.85
110 111 0.609131 AAACCATGGCCAGGACGAAG 60.609 55.000 21.32 3.69 0.00 3.79
111 112 2.124570 CCATGGCCAGGACGAAGG 60.125 66.667 21.32 3.94 0.00 3.46
112 113 2.671070 CATGGCCAGGACGAAGGT 59.329 61.111 13.35 0.00 0.00 3.50
113 114 1.746615 CATGGCCAGGACGAAGGTG 60.747 63.158 13.35 0.00 0.00 4.00
114 115 2.224159 ATGGCCAGGACGAAGGTGT 61.224 57.895 13.05 0.00 0.00 4.16
115 116 2.358737 GGCCAGGACGAAGGTGTG 60.359 66.667 0.00 0.00 0.00 3.82
116 117 2.426023 GCCAGGACGAAGGTGTGT 59.574 61.111 0.00 0.00 0.00 3.72
117 118 1.668151 GCCAGGACGAAGGTGTGTC 60.668 63.158 0.00 0.00 0.00 3.67
118 119 2.050269 CCAGGACGAAGGTGTGTCT 58.950 57.895 0.00 0.00 35.45 3.41
119 120 0.038159 CCAGGACGAAGGTGTGTCTC 60.038 60.000 0.00 0.00 35.45 3.36
120 121 0.387367 CAGGACGAAGGTGTGTCTCG 60.387 60.000 0.00 0.00 35.45 4.04
121 122 1.080705 GGACGAAGGTGTGTCTCGG 60.081 63.158 0.00 0.00 35.45 4.63
122 123 1.080705 GACGAAGGTGTGTCTCGGG 60.081 63.158 0.00 0.00 32.37 5.14
123 124 2.432628 CGAAGGTGTGTCTCGGGC 60.433 66.667 0.00 0.00 0.00 6.13
124 125 2.741092 GAAGGTGTGTCTCGGGCA 59.259 61.111 0.00 0.00 0.00 5.36
125 126 1.070786 GAAGGTGTGTCTCGGGCAA 59.929 57.895 0.00 0.00 0.00 4.52
126 127 0.951040 GAAGGTGTGTCTCGGGCAAG 60.951 60.000 0.00 0.00 0.00 4.01
127 128 2.358737 GGTGTGTCTCGGGCAAGG 60.359 66.667 0.00 0.00 0.00 3.61
128 129 2.358737 GTGTGTCTCGGGCAAGGG 60.359 66.667 0.00 0.00 0.00 3.95
129 130 4.329545 TGTGTCTCGGGCAAGGGC 62.330 66.667 0.00 0.00 40.13 5.19
130 131 4.021925 GTGTCTCGGGCAAGGGCT 62.022 66.667 0.00 0.00 40.87 5.19
131 132 4.020617 TGTCTCGGGCAAGGGCTG 62.021 66.667 0.00 0.00 40.87 4.85
132 133 4.021925 GTCTCGGGCAAGGGCTGT 62.022 66.667 0.00 0.00 40.87 4.40
133 134 3.706373 TCTCGGGCAAGGGCTGTC 61.706 66.667 0.00 0.00 40.87 3.51
149 150 4.338815 TCCACGGCTGGAGTAGAG 57.661 61.111 0.00 0.00 42.15 2.43
150 151 1.379977 TCCACGGCTGGAGTAGAGG 60.380 63.158 0.00 0.00 42.15 3.69
151 152 1.379977 CCACGGCTGGAGTAGAGGA 60.380 63.158 0.00 0.00 40.55 3.71
152 153 1.388065 CCACGGCTGGAGTAGAGGAG 61.388 65.000 0.00 0.00 40.55 3.69
153 154 1.076632 ACGGCTGGAGTAGAGGAGG 60.077 63.158 0.00 0.00 0.00 4.30
154 155 1.076632 CGGCTGGAGTAGAGGAGGT 60.077 63.158 0.00 0.00 0.00 3.85
155 156 0.684805 CGGCTGGAGTAGAGGAGGTT 60.685 60.000 0.00 0.00 0.00 3.50
156 157 0.827368 GGCTGGAGTAGAGGAGGTTG 59.173 60.000 0.00 0.00 0.00 3.77
157 158 1.619977 GGCTGGAGTAGAGGAGGTTGA 60.620 57.143 0.00 0.00 0.00 3.18
158 159 1.478916 GCTGGAGTAGAGGAGGTTGAC 59.521 57.143 0.00 0.00 0.00 3.18
159 160 1.746220 CTGGAGTAGAGGAGGTTGACG 59.254 57.143 0.00 0.00 0.00 4.35
160 161 1.104630 GGAGTAGAGGAGGTTGACGG 58.895 60.000 0.00 0.00 0.00 4.79
161 162 1.104630 GAGTAGAGGAGGTTGACGGG 58.895 60.000 0.00 0.00 0.00 5.28
162 163 0.971447 AGTAGAGGAGGTTGACGGGC 60.971 60.000 0.00 0.00 0.00 6.13
163 164 2.050350 TAGAGGAGGTTGACGGGCG 61.050 63.158 0.00 0.00 0.00 6.13
164 165 4.452733 GAGGAGGTTGACGGGCGG 62.453 72.222 0.00 0.00 0.00 6.13
183 184 3.127533 GGCGCTGGGTGCTTGTAG 61.128 66.667 7.64 0.00 39.23 2.74
184 185 3.127533 GCGCTGGGTGCTTGTAGG 61.128 66.667 0.00 0.00 40.11 3.18
185 186 3.127533 CGCTGGGTGCTTGTAGGC 61.128 66.667 0.00 0.00 40.11 3.93
186 187 2.034066 GCTGGGTGCTTGTAGGCA 59.966 61.111 0.00 0.00 40.15 4.75
187 188 2.042831 GCTGGGTGCTTGTAGGCAG 61.043 63.158 0.00 0.00 43.25 4.85
188 189 1.377725 CTGGGTGCTTGTAGGCAGG 60.378 63.158 0.00 0.00 43.25 4.85
189 190 2.044946 GGGTGCTTGTAGGCAGGG 60.045 66.667 0.00 0.00 43.25 4.45
190 191 2.602676 GGGTGCTTGTAGGCAGGGA 61.603 63.158 0.00 0.00 43.25 4.20
191 192 1.078143 GGTGCTTGTAGGCAGGGAG 60.078 63.158 0.00 0.00 43.25 4.30
192 193 1.078143 GTGCTTGTAGGCAGGGAGG 60.078 63.158 0.00 0.00 43.25 4.30
193 194 2.124529 GCTTGTAGGCAGGGAGGC 60.125 66.667 0.00 0.00 44.61 4.70
218 219 4.838152 GCGGGAAGCTCGCCATGA 62.838 66.667 7.01 0.00 46.55 3.07
220 221 2.203126 GGGAAGCTCGCCATGAGG 60.203 66.667 7.76 0.00 45.38 3.86
221 222 2.203126 GGAAGCTCGCCATGAGGG 60.203 66.667 0.00 0.00 45.38 4.30
231 232 3.214123 CATGAGGGCGGCATGGTG 61.214 66.667 12.47 0.31 39.48 4.17
232 233 3.410628 ATGAGGGCGGCATGGTGA 61.411 61.111 12.47 0.00 0.00 4.02
233 234 3.411114 ATGAGGGCGGCATGGTGAG 62.411 63.158 12.47 0.00 0.00 3.51
234 235 4.864334 GAGGGCGGCATGGTGAGG 62.864 72.222 12.47 0.00 0.00 3.86
261 262 4.838486 GACGAGGCTCGCGACAGG 62.838 72.222 34.76 9.27 45.12 4.00
264 265 3.760035 GAGGCTCGCGACAGGGAA 61.760 66.667 3.71 0.00 38.91 3.97
265 266 3.708220 GAGGCTCGCGACAGGGAAG 62.708 68.421 3.71 0.00 38.91 3.46
266 267 3.760035 GGCTCGCGACAGGGAAGA 61.760 66.667 3.71 0.00 38.91 2.87
267 268 2.261671 GCTCGCGACAGGGAAGAA 59.738 61.111 3.71 0.00 38.91 2.52
268 269 1.807573 GCTCGCGACAGGGAAGAAG 60.808 63.158 3.71 0.00 38.91 2.85
269 270 1.807573 CTCGCGACAGGGAAGAAGC 60.808 63.158 3.71 0.00 38.91 3.86
270 271 3.181967 CGCGACAGGGAAGAAGCG 61.182 66.667 0.00 0.00 41.56 4.68
271 272 2.815647 GCGACAGGGAAGAAGCGG 60.816 66.667 0.00 0.00 0.00 5.52
272 273 2.815647 CGACAGGGAAGAAGCGGC 60.816 66.667 0.00 0.00 0.00 6.53
273 274 2.436824 GACAGGGAAGAAGCGGCC 60.437 66.667 0.00 0.00 0.00 6.13
274 275 3.249189 ACAGGGAAGAAGCGGCCA 61.249 61.111 2.24 0.00 0.00 5.36
275 276 2.437359 CAGGGAAGAAGCGGCCAG 60.437 66.667 2.24 0.00 0.00 4.85
289 290 2.125552 CCAGCTCGACGATGGCAA 60.126 61.111 11.15 0.00 43.15 4.52
290 291 2.169789 CCAGCTCGACGATGGCAAG 61.170 63.158 11.15 3.87 43.15 4.01
291 292 2.169789 CAGCTCGACGATGGCAAGG 61.170 63.158 11.15 0.00 0.00 3.61
292 293 3.567797 GCTCGACGATGGCAAGGC 61.568 66.667 0.00 0.00 0.00 4.35
293 294 3.257561 CTCGACGATGGCAAGGCG 61.258 66.667 14.28 14.28 40.84 5.52
294 295 3.699955 CTCGACGATGGCAAGGCGA 62.700 63.158 20.29 20.29 46.61 5.54
295 296 3.257561 CGACGATGGCAAGGCGAG 61.258 66.667 15.17 5.07 42.33 5.03
296 297 2.892425 GACGATGGCAAGGCGAGG 60.892 66.667 13.38 0.00 0.00 4.63
297 298 4.473520 ACGATGGCAAGGCGAGGG 62.474 66.667 13.38 0.00 0.00 4.30
316 317 4.479993 CGGCCTTGCAGGAGAGGG 62.480 72.222 0.00 0.00 37.67 4.30
317 318 3.011517 GGCCTTGCAGGAGAGGGA 61.012 66.667 4.36 0.00 37.67 4.20
318 319 2.588989 GCCTTGCAGGAGAGGGAG 59.411 66.667 4.36 0.00 37.67 4.30
319 320 3.041469 GCCTTGCAGGAGAGGGAGG 62.041 68.421 4.36 0.00 37.67 4.30
320 321 2.588989 CTTGCAGGAGAGGGAGGC 59.411 66.667 0.00 0.00 0.00 4.70
321 322 3.382803 CTTGCAGGAGAGGGAGGCG 62.383 68.421 0.00 0.00 0.00 5.52
395 396 4.087892 GCCTTGGCGCAGAGGAGA 62.088 66.667 26.73 0.00 34.91 3.71
396 397 2.665000 CCTTGGCGCAGAGGAGAA 59.335 61.111 20.18 0.00 34.91 2.87
397 398 1.003355 CCTTGGCGCAGAGGAGAAA 60.003 57.895 20.18 0.00 34.91 2.52
398 399 0.606401 CCTTGGCGCAGAGGAGAAAA 60.606 55.000 20.18 0.00 34.91 2.29
399 400 0.801251 CTTGGCGCAGAGGAGAAAAG 59.199 55.000 10.83 0.00 0.00 2.27
400 401 1.237285 TTGGCGCAGAGGAGAAAAGC 61.237 55.000 10.83 0.00 0.00 3.51
405 406 2.015736 GCAGAGGAGAAAAGCGATGA 57.984 50.000 0.00 0.00 0.00 2.92
406 407 1.932511 GCAGAGGAGAAAAGCGATGAG 59.067 52.381 0.00 0.00 0.00 2.90
407 408 2.548875 CAGAGGAGAAAAGCGATGAGG 58.451 52.381 0.00 0.00 0.00 3.86
408 409 1.134551 AGAGGAGAAAAGCGATGAGGC 60.135 52.381 0.00 0.00 0.00 4.70
409 410 0.107459 AGGAGAAAAGCGATGAGGCC 60.107 55.000 0.00 0.00 0.00 5.19
410 411 0.107459 GGAGAAAAGCGATGAGGCCT 60.107 55.000 3.86 3.86 0.00 5.19
411 412 1.139058 GGAGAAAAGCGATGAGGCCTA 59.861 52.381 4.42 0.00 0.00 3.93
412 413 2.224402 GGAGAAAAGCGATGAGGCCTAT 60.224 50.000 4.42 0.00 0.00 2.57
413 414 2.805099 GAGAAAAGCGATGAGGCCTATG 59.195 50.000 4.42 0.00 0.00 2.23
414 415 1.265365 GAAAAGCGATGAGGCCTATGC 59.735 52.381 4.42 7.66 0.00 3.14
415 416 0.181114 AAAGCGATGAGGCCTATGCA 59.819 50.000 4.42 0.00 40.13 3.96
416 417 0.250209 AAGCGATGAGGCCTATGCAG 60.250 55.000 4.42 0.00 40.13 4.41
417 418 1.670406 GCGATGAGGCCTATGCAGG 60.670 63.158 4.42 0.00 45.77 4.85
425 426 4.872357 CCTATGCAGGCTCAGTGG 57.128 61.111 0.00 0.00 34.35 4.00
426 427 1.525535 CCTATGCAGGCTCAGTGGC 60.526 63.158 0.00 0.00 42.15 5.01
434 435 2.216148 GGCTCAGTGGCTAGATGGT 58.784 57.895 0.00 0.00 38.32 3.55
435 436 0.179062 GGCTCAGTGGCTAGATGGTG 60.179 60.000 0.00 0.00 38.32 4.17
436 437 0.179062 GCTCAGTGGCTAGATGGTGG 60.179 60.000 0.00 0.00 0.00 4.61
437 438 0.467384 CTCAGTGGCTAGATGGTGGG 59.533 60.000 0.00 0.00 0.00 4.61
438 439 0.042581 TCAGTGGCTAGATGGTGGGA 59.957 55.000 0.00 0.00 0.00 4.37
439 440 0.179000 CAGTGGCTAGATGGTGGGAC 59.821 60.000 0.00 0.00 0.00 4.46
440 441 1.144057 GTGGCTAGATGGTGGGACG 59.856 63.158 0.00 0.00 0.00 4.79
441 442 1.001120 TGGCTAGATGGTGGGACGA 59.999 57.895 0.00 0.00 0.00 4.20
442 443 1.043116 TGGCTAGATGGTGGGACGAG 61.043 60.000 0.00 0.00 0.00 4.18
443 444 1.742768 GCTAGATGGTGGGACGAGG 59.257 63.158 0.00 0.00 0.00 4.63
444 445 0.755698 GCTAGATGGTGGGACGAGGA 60.756 60.000 0.00 0.00 0.00 3.71
445 446 1.323412 CTAGATGGTGGGACGAGGAG 58.677 60.000 0.00 0.00 0.00 3.69
446 447 0.106167 TAGATGGTGGGACGAGGAGG 60.106 60.000 0.00 0.00 0.00 4.30
447 448 1.686110 GATGGTGGGACGAGGAGGT 60.686 63.158 0.00 0.00 0.00 3.85
448 449 1.677637 GATGGTGGGACGAGGAGGTC 61.678 65.000 0.00 0.00 36.18 3.85
457 458 3.551407 GAGGAGGTCGGGGCCATC 61.551 72.222 4.39 0.00 0.00 3.51
460 461 3.171388 GAGGTCGGGGCCATCCAT 61.171 66.667 4.39 0.00 37.22 3.41
461 462 3.482232 GAGGTCGGGGCCATCCATG 62.482 68.421 4.39 0.00 37.22 3.66
490 491 4.106925 GGAGCTCTGGCCTGGGTG 62.107 72.222 14.64 2.96 39.73 4.61
491 492 4.106925 GAGCTCTGGCCTGGGTGG 62.107 72.222 11.64 0.60 39.73 4.61
492 493 4.990910 AGCTCTGGCCTGGGTGGT 62.991 66.667 11.64 4.48 39.73 4.16
493 494 4.416738 GCTCTGGCCTGGGTGGTC 62.417 72.222 11.64 0.00 41.87 4.02
494 495 4.087892 CTCTGGCCTGGGTGGTCG 62.088 72.222 10.07 0.00 45.26 4.79
536 537 4.803426 GCTGGTCGCGAGGTGGAG 62.803 72.222 10.24 1.96 0.00 3.86
537 538 4.135153 CTGGTCGCGAGGTGGAGG 62.135 72.222 10.24 0.00 0.00 4.30
544 545 3.151022 CGAGGTGGAGGGGAGCTC 61.151 72.222 4.71 4.71 35.10 4.09
545 546 3.151022 GAGGTGGAGGGGAGCTCG 61.151 72.222 7.83 0.00 0.00 5.03
546 547 3.663815 GAGGTGGAGGGGAGCTCGA 62.664 68.421 7.83 0.00 0.00 4.04
547 548 3.151022 GGTGGAGGGGAGCTCGAG 61.151 72.222 8.45 8.45 0.00 4.04
548 549 2.043852 GTGGAGGGGAGCTCGAGA 60.044 66.667 18.75 0.00 0.00 4.04
549 550 1.682684 GTGGAGGGGAGCTCGAGAA 60.683 63.158 18.75 0.00 0.00 2.87
550 551 1.045911 GTGGAGGGGAGCTCGAGAAT 61.046 60.000 18.75 2.89 0.00 2.40
551 552 1.045350 TGGAGGGGAGCTCGAGAATG 61.045 60.000 18.75 0.00 0.00 2.67
552 553 1.745264 GAGGGGAGCTCGAGAATGG 59.255 63.158 18.75 0.00 0.00 3.16
553 554 1.753368 GAGGGGAGCTCGAGAATGGG 61.753 65.000 18.75 0.00 0.00 4.00
554 555 1.762460 GGGGAGCTCGAGAATGGGA 60.762 63.158 18.75 0.00 0.00 4.37
555 556 1.338136 GGGGAGCTCGAGAATGGGAA 61.338 60.000 18.75 0.00 0.00 3.97
556 557 0.105778 GGGAGCTCGAGAATGGGAAG 59.894 60.000 18.75 0.00 0.00 3.46
557 558 0.105778 GGAGCTCGAGAATGGGAAGG 59.894 60.000 18.75 0.00 0.00 3.46
558 559 1.115467 GAGCTCGAGAATGGGAAGGA 58.885 55.000 18.75 0.00 0.00 3.36
559 560 1.068434 GAGCTCGAGAATGGGAAGGAG 59.932 57.143 18.75 0.00 0.00 3.69
560 561 1.115467 GCTCGAGAATGGGAAGGAGA 58.885 55.000 18.75 0.00 0.00 3.71
561 562 1.482593 GCTCGAGAATGGGAAGGAGAA 59.517 52.381 18.75 0.00 0.00 2.87
562 563 2.482839 GCTCGAGAATGGGAAGGAGAAG 60.483 54.545 18.75 0.00 0.00 2.85
563 564 2.102252 CTCGAGAATGGGAAGGAGAAGG 59.898 54.545 6.58 0.00 0.00 3.46
564 565 2.111384 CGAGAATGGGAAGGAGAAGGA 58.889 52.381 0.00 0.00 0.00 3.36
565 566 2.102252 CGAGAATGGGAAGGAGAAGGAG 59.898 54.545 0.00 0.00 0.00 3.69
566 567 3.379452 GAGAATGGGAAGGAGAAGGAGA 58.621 50.000 0.00 0.00 0.00 3.71
567 568 3.383223 AGAATGGGAAGGAGAAGGAGAG 58.617 50.000 0.00 0.00 0.00 3.20
568 569 2.188818 ATGGGAAGGAGAAGGAGAGG 57.811 55.000 0.00 0.00 0.00 3.69
569 570 0.793617 TGGGAAGGAGAAGGAGAGGT 59.206 55.000 0.00 0.00 0.00 3.85
570 571 1.199615 GGGAAGGAGAAGGAGAGGTG 58.800 60.000 0.00 0.00 0.00 4.00
571 572 0.539518 GGAAGGAGAAGGAGAGGTGC 59.460 60.000 0.00 0.00 0.00 5.01
572 573 1.567357 GAAGGAGAAGGAGAGGTGCT 58.433 55.000 0.00 0.00 0.00 4.40
573 574 1.480545 GAAGGAGAAGGAGAGGTGCTC 59.519 57.143 0.00 0.00 43.17 4.26
574 575 0.682855 AGGAGAAGGAGAGGTGCTCG 60.683 60.000 0.00 0.00 44.91 5.03
575 576 0.968393 GGAGAAGGAGAGGTGCTCGT 60.968 60.000 0.00 0.00 44.91 4.18
576 577 0.172352 GAGAAGGAGAGGTGCTCGTG 59.828 60.000 0.00 0.00 44.91 4.35
577 578 0.251386 AGAAGGAGAGGTGCTCGTGA 60.251 55.000 0.00 0.00 44.91 4.35
578 579 0.172352 GAAGGAGAGGTGCTCGTGAG 59.828 60.000 0.00 0.00 44.91 3.51
579 580 1.254284 AAGGAGAGGTGCTCGTGAGG 61.254 60.000 0.00 0.00 44.91 3.86
580 581 2.716017 GGAGAGGTGCTCGTGAGGG 61.716 68.421 0.00 0.00 44.91 4.30
581 582 1.679305 GAGAGGTGCTCGTGAGGGA 60.679 63.158 0.00 0.00 35.36 4.20
582 583 1.662438 GAGAGGTGCTCGTGAGGGAG 61.662 65.000 0.00 0.00 35.36 4.30
583 584 1.679305 GAGGTGCTCGTGAGGGAGA 60.679 63.158 0.00 0.00 36.08 3.71
584 585 1.662438 GAGGTGCTCGTGAGGGAGAG 61.662 65.000 0.00 0.00 36.08 3.20
585 586 2.716017 GGTGCTCGTGAGGGAGAGG 61.716 68.421 0.00 0.00 36.08 3.69
586 587 2.363018 TGCTCGTGAGGGAGAGGG 60.363 66.667 0.00 0.00 36.08 4.30
587 588 3.151022 GCTCGTGAGGGAGAGGGG 61.151 72.222 0.00 0.00 36.08 4.79
588 589 2.684104 CTCGTGAGGGAGAGGGGA 59.316 66.667 0.00 0.00 36.08 4.81
589 590 1.231641 CTCGTGAGGGAGAGGGGAT 59.768 63.158 0.00 0.00 36.08 3.85
590 591 0.825840 CTCGTGAGGGAGAGGGGATC 60.826 65.000 0.00 0.00 36.08 3.36
591 592 2.196925 CGTGAGGGAGAGGGGATCG 61.197 68.421 0.00 0.00 0.00 3.69
592 593 1.834822 GTGAGGGAGAGGGGATCGG 60.835 68.421 0.00 0.00 0.00 4.18
593 594 2.203714 GAGGGAGAGGGGATCGGG 60.204 72.222 0.00 0.00 0.00 5.14
594 595 2.704198 AGGGAGAGGGGATCGGGA 60.704 66.667 0.00 0.00 0.00 5.14
595 596 2.100525 GAGGGAGAGGGGATCGGGAT 62.101 65.000 0.00 0.00 0.00 3.85
596 597 1.610967 GGGAGAGGGGATCGGGATC 60.611 68.421 0.00 0.00 37.11 3.36
597 598 1.156330 GGAGAGGGGATCGGGATCA 59.844 63.158 10.57 0.00 39.54 2.92
598 599 0.902516 GGAGAGGGGATCGGGATCAG 60.903 65.000 10.57 0.00 39.54 2.90
599 600 0.902516 GAGAGGGGATCGGGATCAGG 60.903 65.000 10.57 0.00 39.54 3.86
600 601 2.527875 AGGGGATCGGGATCAGGC 60.528 66.667 10.57 0.00 39.54 4.85
601 602 2.849162 GGGGATCGGGATCAGGCA 60.849 66.667 10.57 0.00 39.54 4.75
602 603 2.427753 GGGATCGGGATCAGGCAC 59.572 66.667 10.57 0.00 39.54 5.01
603 604 2.427753 GGATCGGGATCAGGCACC 59.572 66.667 10.57 0.00 39.54 5.01
608 609 3.728373 GGGATCAGGCACCGGGTT 61.728 66.667 6.32 0.00 0.00 4.11
609 610 2.355115 GGATCAGGCACCGGGTTT 59.645 61.111 6.32 0.00 0.00 3.27
610 611 1.749258 GGATCAGGCACCGGGTTTC 60.749 63.158 6.32 0.00 0.00 2.78
611 612 1.299976 GATCAGGCACCGGGTTTCT 59.700 57.895 6.32 0.00 0.00 2.52
612 613 1.002134 ATCAGGCACCGGGTTTCTG 60.002 57.895 6.32 16.29 0.00 3.02
613 614 2.484287 ATCAGGCACCGGGTTTCTGG 62.484 60.000 20.02 2.56 45.02 3.86
614 615 4.660938 AGGCACCGGGTTTCTGGC 62.661 66.667 6.32 6.97 43.29 4.85
752 753 9.528018 TTTCTCAATAAAAACAAATGACTGGTC 57.472 29.630 0.00 0.00 0.00 4.02
907 910 2.087462 CTCCACTCCACTCGCACACA 62.087 60.000 0.00 0.00 0.00 3.72
1188 1212 0.250858 AGTGTGCTACAATGCAGGCA 60.251 50.000 0.00 0.00 44.20 4.75
1545 1589 6.765989 TGTCTGTAGTTGCTGTCAGTAAATTT 59.234 34.615 8.90 0.00 0.00 1.82
1713 1776 8.859090 TGTTTAGGACATTGATTTGAACTTGAT 58.141 29.630 0.00 0.00 32.00 2.57
1875 1938 3.091633 CCCCATGGCCTTCTATTATGG 57.908 52.381 6.09 6.67 38.37 2.74
1906 1969 5.815233 TTGGAGAAGATATGGGAGATGTC 57.185 43.478 0.00 0.00 0.00 3.06
2076 2139 5.266788 ACAACAGGGTCATGATTGATGAAT 58.733 37.500 11.90 0.00 42.96 2.57
2518 2582 7.553760 TGTAATGACTGTGATGTTTATCTGCAT 59.446 33.333 0.00 0.00 34.31 3.96
2575 2639 1.985895 ACTAGCTGCAAAACTACCCCT 59.014 47.619 1.02 0.00 0.00 4.79
2728 2806 8.659925 AATTGTTGATCACATAAAGCACAAAA 57.340 26.923 8.85 0.00 34.43 2.44
2898 2976 9.730705 CTTAACATATCATTCATCTGGGTACAT 57.269 33.333 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.176219 CTCTGCTGCTCTCCCTTGAG 59.824 60.000 0.00 0.00 40.17 3.02
3 4 1.263342 CCTCTGCTGCTCTCCCTTGA 61.263 60.000 0.00 0.00 0.00 3.02
4 5 1.221293 CCTCTGCTGCTCTCCCTTG 59.779 63.158 0.00 0.00 0.00 3.61
5 6 1.994507 CCCTCTGCTGCTCTCCCTT 60.995 63.158 0.00 0.00 0.00 3.95
6 7 2.365370 CCCTCTGCTGCTCTCCCT 60.365 66.667 0.00 0.00 0.00 4.20
7 8 4.173924 GCCCTCTGCTGCTCTCCC 62.174 72.222 0.00 0.00 36.87 4.30
8 9 2.964310 TTGCCCTCTGCTGCTCTCC 61.964 63.158 0.00 0.00 42.00 3.71
9 10 1.744741 GTTGCCCTCTGCTGCTCTC 60.745 63.158 0.00 0.00 42.00 3.20
10 11 2.350514 GTTGCCCTCTGCTGCTCT 59.649 61.111 0.00 0.00 42.00 4.09
11 12 2.033141 TGTTGCCCTCTGCTGCTC 59.967 61.111 0.00 0.00 42.00 4.26
12 13 2.033757 CTGTTGCCCTCTGCTGCT 59.966 61.111 0.00 0.00 42.00 4.24
13 14 3.745803 GCTGTTGCCCTCTGCTGC 61.746 66.667 0.00 0.00 42.00 5.25
14 15 2.281970 TGCTGTTGCCCTCTGCTG 60.282 61.111 0.00 0.00 42.00 4.41
15 16 2.033757 CTGCTGTTGCCCTCTGCT 59.966 61.111 0.00 0.00 42.00 4.24
16 17 3.745803 GCTGCTGTTGCCCTCTGC 61.746 66.667 0.00 0.00 38.71 4.26
17 18 2.281970 TGCTGCTGTTGCCCTCTG 60.282 61.111 0.00 0.00 38.71 3.35
18 19 2.282040 GTGCTGCTGTTGCCCTCT 60.282 61.111 0.00 0.00 38.71 3.69
19 20 2.282040 AGTGCTGCTGTTGCCCTC 60.282 61.111 0.00 0.00 38.71 4.30
20 21 2.596631 CAGTGCTGCTGTTGCCCT 60.597 61.111 0.00 0.00 40.27 5.19
21 22 2.595463 TCAGTGCTGCTGTTGCCC 60.595 61.111 0.00 0.00 45.23 5.36
22 23 2.623915 CCTCAGTGCTGCTGTTGCC 61.624 63.158 0.00 0.00 45.23 4.52
23 24 1.575576 CTCCTCAGTGCTGCTGTTGC 61.576 60.000 0.00 0.00 45.23 4.17
24 25 0.034476 TCTCCTCAGTGCTGCTGTTG 59.966 55.000 0.00 0.00 45.23 3.33
25 26 0.982704 ATCTCCTCAGTGCTGCTGTT 59.017 50.000 0.00 0.00 45.23 3.16
26 27 0.249676 CATCTCCTCAGTGCTGCTGT 59.750 55.000 0.00 0.00 45.23 4.40
27 28 0.462225 CCATCTCCTCAGTGCTGCTG 60.462 60.000 0.00 3.02 46.34 4.41
28 29 0.908656 ACCATCTCCTCAGTGCTGCT 60.909 55.000 0.00 0.00 0.00 4.24
29 30 0.743701 CACCATCTCCTCAGTGCTGC 60.744 60.000 0.00 0.00 0.00 5.25
30 31 0.107800 CCACCATCTCCTCAGTGCTG 60.108 60.000 0.00 0.00 0.00 4.41
31 32 0.546267 ACCACCATCTCCTCAGTGCT 60.546 55.000 0.00 0.00 0.00 4.40
32 33 0.392193 CACCACCATCTCCTCAGTGC 60.392 60.000 0.00 0.00 0.00 4.40
33 34 0.251354 CCACCACCATCTCCTCAGTG 59.749 60.000 0.00 0.00 0.00 3.66
34 35 0.178891 ACCACCACCATCTCCTCAGT 60.179 55.000 0.00 0.00 0.00 3.41
35 36 0.539051 GACCACCACCATCTCCTCAG 59.461 60.000 0.00 0.00 0.00 3.35
36 37 0.178906 TGACCACCACCATCTCCTCA 60.179 55.000 0.00 0.00 0.00 3.86
37 38 0.984230 TTGACCACCACCATCTCCTC 59.016 55.000 0.00 0.00 0.00 3.71
38 39 1.073923 GTTTGACCACCACCATCTCCT 59.926 52.381 0.00 0.00 0.00 3.69
39 40 1.534729 GTTTGACCACCACCATCTCC 58.465 55.000 0.00 0.00 0.00 3.71
40 41 1.156736 CGTTTGACCACCACCATCTC 58.843 55.000 0.00 0.00 0.00 2.75
41 42 0.762418 TCGTTTGACCACCACCATCT 59.238 50.000 0.00 0.00 0.00 2.90
42 43 1.156736 CTCGTTTGACCACCACCATC 58.843 55.000 0.00 0.00 0.00 3.51
43 44 0.250727 CCTCGTTTGACCACCACCAT 60.251 55.000 0.00 0.00 0.00 3.55
44 45 1.147376 CCTCGTTTGACCACCACCA 59.853 57.895 0.00 0.00 0.00 4.17
45 46 2.258726 GCCTCGTTTGACCACCACC 61.259 63.158 0.00 0.00 0.00 4.61
46 47 1.507141 CTGCCTCGTTTGACCACCAC 61.507 60.000 0.00 0.00 0.00 4.16
47 48 1.227823 CTGCCTCGTTTGACCACCA 60.228 57.895 0.00 0.00 0.00 4.17
48 49 1.966451 CCTGCCTCGTTTGACCACC 60.966 63.158 0.00 0.00 0.00 4.61
49 50 1.966451 CCCTGCCTCGTTTGACCAC 60.966 63.158 0.00 0.00 0.00 4.16
50 51 2.429930 CCCTGCCTCGTTTGACCA 59.570 61.111 0.00 0.00 0.00 4.02
51 52 3.056328 GCCCTGCCTCGTTTGACC 61.056 66.667 0.00 0.00 0.00 4.02
52 53 3.056328 GGCCCTGCCTCGTTTGAC 61.056 66.667 0.00 0.00 46.69 3.18
68 69 3.934391 GACCTCTTCCCGCGTGTGG 62.934 68.421 4.92 0.00 0.00 4.17
69 70 2.432628 GACCTCTTCCCGCGTGTG 60.433 66.667 4.92 0.00 0.00 3.82
70 71 2.915659 TGACCTCTTCCCGCGTGT 60.916 61.111 4.92 0.00 0.00 4.49
71 72 2.125912 CTGACCTCTTCCCGCGTG 60.126 66.667 4.92 0.00 0.00 5.34
72 73 3.382832 CCTGACCTCTTCCCGCGT 61.383 66.667 4.92 0.00 0.00 6.01
73 74 4.148825 CCCTGACCTCTTCCCGCG 62.149 72.222 0.00 0.00 0.00 6.46
74 75 1.838073 TTTCCCTGACCTCTTCCCGC 61.838 60.000 0.00 0.00 0.00 6.13
75 76 0.036294 GTTTCCCTGACCTCTTCCCG 60.036 60.000 0.00 0.00 0.00 5.14
76 77 0.328592 GGTTTCCCTGACCTCTTCCC 59.671 60.000 0.00 0.00 34.27 3.97
77 78 1.064825 TGGTTTCCCTGACCTCTTCC 58.935 55.000 0.00 0.00 38.04 3.46
78 79 2.619074 CCATGGTTTCCCTGACCTCTTC 60.619 54.545 2.57 0.00 38.04 2.87
79 80 1.355720 CCATGGTTTCCCTGACCTCTT 59.644 52.381 2.57 0.00 38.04 2.85
80 81 0.995024 CCATGGTTTCCCTGACCTCT 59.005 55.000 2.57 0.00 38.04 3.69
81 82 0.681243 GCCATGGTTTCCCTGACCTC 60.681 60.000 14.67 0.00 38.04 3.85
82 83 1.384191 GCCATGGTTTCCCTGACCT 59.616 57.895 14.67 0.00 38.04 3.85
83 84 1.682344 GGCCATGGTTTCCCTGACC 60.682 63.158 14.67 0.00 37.69 4.02
84 85 0.967380 CTGGCCATGGTTTCCCTGAC 60.967 60.000 14.67 0.00 0.00 3.51
85 86 1.383799 CTGGCCATGGTTTCCCTGA 59.616 57.895 14.67 0.00 0.00 3.86
86 87 1.683365 CCTGGCCATGGTTTCCCTG 60.683 63.158 14.67 9.59 0.00 4.45
87 88 1.856873 TCCTGGCCATGGTTTCCCT 60.857 57.895 14.67 0.00 0.00 4.20
88 89 1.682344 GTCCTGGCCATGGTTTCCC 60.682 63.158 14.67 6.38 0.00 3.97
89 90 2.046285 CGTCCTGGCCATGGTTTCC 61.046 63.158 14.67 6.78 0.00 3.13
90 91 0.608035 TTCGTCCTGGCCATGGTTTC 60.608 55.000 14.67 4.29 0.00 2.78
91 92 0.609131 CTTCGTCCTGGCCATGGTTT 60.609 55.000 14.67 0.00 0.00 3.27
92 93 1.002134 CTTCGTCCTGGCCATGGTT 60.002 57.895 14.67 0.00 0.00 3.67
93 94 2.671070 CTTCGTCCTGGCCATGGT 59.329 61.111 14.67 0.00 0.00 3.55
94 95 2.124570 CCTTCGTCCTGGCCATGG 60.125 66.667 5.51 7.63 0.00 3.66
95 96 1.746615 CACCTTCGTCCTGGCCATG 60.747 63.158 5.51 2.84 0.00 3.66
96 97 2.224159 ACACCTTCGTCCTGGCCAT 61.224 57.895 5.51 0.00 0.00 4.40
97 98 2.847234 ACACCTTCGTCCTGGCCA 60.847 61.111 4.71 4.71 0.00 5.36
98 99 2.358737 CACACCTTCGTCCTGGCC 60.359 66.667 0.00 0.00 0.00 5.36
99 100 1.668151 GACACACCTTCGTCCTGGC 60.668 63.158 0.00 0.00 0.00 4.85
100 101 0.038159 GAGACACACCTTCGTCCTGG 60.038 60.000 0.00 0.00 32.33 4.45
101 102 0.387367 CGAGACACACCTTCGTCCTG 60.387 60.000 0.00 0.00 32.33 3.86
102 103 1.524863 CCGAGACACACCTTCGTCCT 61.525 60.000 0.00 0.00 32.33 3.85
103 104 1.080705 CCGAGACACACCTTCGTCC 60.081 63.158 0.00 0.00 32.33 4.79
104 105 1.080705 CCCGAGACACACCTTCGTC 60.081 63.158 0.00 0.00 0.00 4.20
105 106 3.048602 CCCGAGACACACCTTCGT 58.951 61.111 0.00 0.00 0.00 3.85
106 107 2.432628 GCCCGAGACACACCTTCG 60.433 66.667 0.00 0.00 0.00 3.79
107 108 0.951040 CTTGCCCGAGACACACCTTC 60.951 60.000 0.00 0.00 0.00 3.46
108 109 1.071471 CTTGCCCGAGACACACCTT 59.929 57.895 0.00 0.00 0.00 3.50
109 110 2.743718 CTTGCCCGAGACACACCT 59.256 61.111 0.00 0.00 0.00 4.00
110 111 2.358737 CCTTGCCCGAGACACACC 60.359 66.667 0.00 0.00 0.00 4.16
111 112 2.358737 CCCTTGCCCGAGACACAC 60.359 66.667 0.00 0.00 0.00 3.82
112 113 4.329545 GCCCTTGCCCGAGACACA 62.330 66.667 0.00 0.00 0.00 3.72
113 114 4.021925 AGCCCTTGCCCGAGACAC 62.022 66.667 0.00 0.00 38.69 3.67
114 115 4.020617 CAGCCCTTGCCCGAGACA 62.021 66.667 0.00 0.00 38.69 3.41
115 116 3.959991 GACAGCCCTTGCCCGAGAC 62.960 68.421 0.00 0.00 38.69 3.36
116 117 3.706373 GACAGCCCTTGCCCGAGA 61.706 66.667 0.00 0.00 38.69 4.04
117 118 4.785453 GGACAGCCCTTGCCCGAG 62.785 72.222 0.00 0.00 38.69 4.63
123 124 4.335647 AGCCGTGGACAGCCCTTG 62.336 66.667 0.00 0.00 35.38 3.61
124 125 4.335647 CAGCCGTGGACAGCCCTT 62.336 66.667 0.00 0.00 35.38 3.95
127 128 4.767255 CTCCAGCCGTGGACAGCC 62.767 72.222 0.00 0.00 46.77 4.85
128 129 2.564553 CTACTCCAGCCGTGGACAGC 62.565 65.000 0.00 0.00 46.77 4.40
129 130 0.965866 TCTACTCCAGCCGTGGACAG 60.966 60.000 0.00 0.00 46.77 3.51
130 131 0.965866 CTCTACTCCAGCCGTGGACA 60.966 60.000 0.00 0.00 46.77 4.02
131 132 1.668101 CCTCTACTCCAGCCGTGGAC 61.668 65.000 0.00 0.00 46.77 4.02
133 134 1.379977 TCCTCTACTCCAGCCGTGG 60.380 63.158 0.00 0.00 46.63 4.94
134 135 1.388065 CCTCCTCTACTCCAGCCGTG 61.388 65.000 0.00 0.00 0.00 4.94
135 136 1.076632 CCTCCTCTACTCCAGCCGT 60.077 63.158 0.00 0.00 0.00 5.68
136 137 0.684805 AACCTCCTCTACTCCAGCCG 60.685 60.000 0.00 0.00 0.00 5.52
137 138 0.827368 CAACCTCCTCTACTCCAGCC 59.173 60.000 0.00 0.00 0.00 4.85
138 139 1.478916 GTCAACCTCCTCTACTCCAGC 59.521 57.143 0.00 0.00 0.00 4.85
139 140 1.746220 CGTCAACCTCCTCTACTCCAG 59.254 57.143 0.00 0.00 0.00 3.86
140 141 1.616187 CCGTCAACCTCCTCTACTCCA 60.616 57.143 0.00 0.00 0.00 3.86
141 142 1.104630 CCGTCAACCTCCTCTACTCC 58.895 60.000 0.00 0.00 0.00 3.85
142 143 1.104630 CCCGTCAACCTCCTCTACTC 58.895 60.000 0.00 0.00 0.00 2.59
143 144 0.971447 GCCCGTCAACCTCCTCTACT 60.971 60.000 0.00 0.00 0.00 2.57
144 145 1.516423 GCCCGTCAACCTCCTCTAC 59.484 63.158 0.00 0.00 0.00 2.59
145 146 2.050350 CGCCCGTCAACCTCCTCTA 61.050 63.158 0.00 0.00 0.00 2.43
146 147 3.382832 CGCCCGTCAACCTCCTCT 61.383 66.667 0.00 0.00 0.00 3.69
147 148 4.452733 CCGCCCGTCAACCTCCTC 62.453 72.222 0.00 0.00 0.00 3.71
169 170 2.034066 TGCCTACAAGCACCCAGC 59.966 61.111 0.00 0.00 46.19 4.85
170 171 1.377725 CCTGCCTACAAGCACCCAG 60.378 63.158 0.00 0.00 38.00 4.45
171 172 2.756400 CCTGCCTACAAGCACCCA 59.244 61.111 0.00 0.00 38.00 4.51
172 173 2.044946 CCCTGCCTACAAGCACCC 60.045 66.667 0.00 0.00 38.00 4.61
173 174 1.078143 CTCCCTGCCTACAAGCACC 60.078 63.158 0.00 0.00 38.00 5.01
174 175 1.078143 CCTCCCTGCCTACAAGCAC 60.078 63.158 0.00 0.00 38.00 4.40
175 176 2.971598 GCCTCCCTGCCTACAAGCA 61.972 63.158 0.00 0.00 41.46 3.91
176 177 2.124529 GCCTCCCTGCCTACAAGC 60.125 66.667 0.00 0.00 0.00 4.01
202 203 2.587194 CTCATGGCGAGCTTCCCG 60.587 66.667 0.00 0.00 34.18 5.14
203 204 2.203126 CCTCATGGCGAGCTTCCC 60.203 66.667 0.00 0.54 40.78 3.97
204 205 2.203126 CCCTCATGGCGAGCTTCC 60.203 66.667 0.00 0.00 40.78 3.46
214 215 3.214123 CACCATGCCGCCCTCATG 61.214 66.667 0.00 0.00 40.60 3.07
215 216 3.410628 TCACCATGCCGCCCTCAT 61.411 61.111 0.00 0.00 0.00 2.90
216 217 4.100084 CTCACCATGCCGCCCTCA 62.100 66.667 0.00 0.00 0.00 3.86
217 218 4.864334 CCTCACCATGCCGCCCTC 62.864 72.222 0.00 0.00 0.00 4.30
222 223 2.821366 GAGTGCCTCACCATGCCG 60.821 66.667 0.00 0.00 34.49 5.69
223 224 2.439156 GGAGTGCCTCACCATGCC 60.439 66.667 4.85 0.00 34.49 4.40
224 225 2.821366 CGGAGTGCCTCACCATGC 60.821 66.667 4.85 0.00 34.49 4.06
225 226 2.124983 CCGGAGTGCCTCACCATG 60.125 66.667 0.00 0.00 34.49 3.66
226 227 4.101448 GCCGGAGTGCCTCACCAT 62.101 66.667 5.05 0.00 34.49 3.55
244 245 4.838486 CCTGTCGCGAGCCTCGTC 62.838 72.222 16.50 7.20 42.81 4.20
247 248 3.708220 CTTCCCTGTCGCGAGCCTC 62.708 68.421 10.24 0.00 0.00 4.70
248 249 3.764466 CTTCCCTGTCGCGAGCCT 61.764 66.667 10.24 0.00 0.00 4.58
249 250 3.296709 TTCTTCCCTGTCGCGAGCC 62.297 63.158 10.24 0.00 0.00 4.70
250 251 1.807573 CTTCTTCCCTGTCGCGAGC 60.808 63.158 10.24 5.27 0.00 5.03
251 252 1.807573 GCTTCTTCCCTGTCGCGAG 60.808 63.158 10.24 0.00 0.00 5.03
252 253 2.261671 GCTTCTTCCCTGTCGCGA 59.738 61.111 3.71 3.71 0.00 5.87
253 254 3.181967 CGCTTCTTCCCTGTCGCG 61.182 66.667 0.00 0.00 34.50 5.87
254 255 2.815647 CCGCTTCTTCCCTGTCGC 60.816 66.667 0.00 0.00 0.00 5.19
255 256 2.815647 GCCGCTTCTTCCCTGTCG 60.816 66.667 0.00 0.00 0.00 4.35
256 257 2.436824 GGCCGCTTCTTCCCTGTC 60.437 66.667 0.00 0.00 0.00 3.51
257 258 3.249189 TGGCCGCTTCTTCCCTGT 61.249 61.111 0.00 0.00 0.00 4.00
258 259 2.437359 CTGGCCGCTTCTTCCCTG 60.437 66.667 0.00 0.00 0.00 4.45
259 260 4.416738 GCTGGCCGCTTCTTCCCT 62.417 66.667 11.61 0.00 35.14 4.20
272 273 2.125552 TTGCCATCGTCGAGCTGG 60.126 61.111 10.03 10.03 39.09 4.85
273 274 2.169789 CCTTGCCATCGTCGAGCTG 61.170 63.158 0.00 0.00 0.00 4.24
274 275 2.185350 CCTTGCCATCGTCGAGCT 59.815 61.111 0.00 0.00 0.00 4.09
275 276 3.567797 GCCTTGCCATCGTCGAGC 61.568 66.667 0.00 0.00 0.00 5.03
276 277 3.257561 CGCCTTGCCATCGTCGAG 61.258 66.667 0.00 0.00 0.00 4.04
277 278 3.699955 CTCGCCTTGCCATCGTCGA 62.700 63.158 0.00 0.00 0.00 4.20
278 279 3.257561 CTCGCCTTGCCATCGTCG 61.258 66.667 0.00 0.00 0.00 5.12
279 280 2.892425 CCTCGCCTTGCCATCGTC 60.892 66.667 0.00 0.00 0.00 4.20
280 281 4.473520 CCCTCGCCTTGCCATCGT 62.474 66.667 0.00 0.00 0.00 3.73
303 304 2.588989 GCCTCCCTCTCCTGCAAG 59.411 66.667 0.00 0.00 0.00 4.01
304 305 3.393970 CGCCTCCCTCTCCTGCAA 61.394 66.667 0.00 0.00 0.00 4.08
378 379 3.612247 TTCTCCTCTGCGCCAAGGC 62.612 63.158 17.91 0.00 37.85 4.35
379 380 0.606401 TTTTCTCCTCTGCGCCAAGG 60.606 55.000 16.89 16.89 0.00 3.61
380 381 0.801251 CTTTTCTCCTCTGCGCCAAG 59.199 55.000 4.18 1.30 0.00 3.61
381 382 1.237285 GCTTTTCTCCTCTGCGCCAA 61.237 55.000 4.18 0.00 0.00 4.52
382 383 1.672356 GCTTTTCTCCTCTGCGCCA 60.672 57.895 4.18 0.00 0.00 5.69
383 384 2.744768 CGCTTTTCTCCTCTGCGCC 61.745 63.158 4.18 0.00 40.15 6.53
384 385 1.086634 ATCGCTTTTCTCCTCTGCGC 61.087 55.000 0.00 0.00 45.24 6.09
385 386 0.649475 CATCGCTTTTCTCCTCTGCG 59.351 55.000 0.00 0.00 46.71 5.18
386 387 1.932511 CTCATCGCTTTTCTCCTCTGC 59.067 52.381 0.00 0.00 0.00 4.26
387 388 2.548875 CCTCATCGCTTTTCTCCTCTG 58.451 52.381 0.00 0.00 0.00 3.35
388 389 1.134551 GCCTCATCGCTTTTCTCCTCT 60.135 52.381 0.00 0.00 0.00 3.69
389 390 1.294857 GCCTCATCGCTTTTCTCCTC 58.705 55.000 0.00 0.00 0.00 3.71
390 391 0.107459 GGCCTCATCGCTTTTCTCCT 60.107 55.000 0.00 0.00 0.00 3.69
391 392 0.107459 AGGCCTCATCGCTTTTCTCC 60.107 55.000 0.00 0.00 0.00 3.71
392 393 2.604046 TAGGCCTCATCGCTTTTCTC 57.396 50.000 9.68 0.00 0.00 2.87
393 394 2.843701 CATAGGCCTCATCGCTTTTCT 58.156 47.619 9.68 0.00 0.00 2.52
394 395 1.265365 GCATAGGCCTCATCGCTTTTC 59.735 52.381 9.68 0.00 0.00 2.29
395 396 1.312815 GCATAGGCCTCATCGCTTTT 58.687 50.000 9.68 0.00 0.00 2.27
396 397 0.181114 TGCATAGGCCTCATCGCTTT 59.819 50.000 9.68 0.00 40.13 3.51
397 398 0.250209 CTGCATAGGCCTCATCGCTT 60.250 55.000 9.68 0.00 40.13 4.68
398 399 1.370437 CTGCATAGGCCTCATCGCT 59.630 57.895 9.68 0.00 40.13 4.93
399 400 1.670406 CCTGCATAGGCCTCATCGC 60.670 63.158 9.68 8.77 40.13 4.58
400 401 4.689484 CCTGCATAGGCCTCATCG 57.311 61.111 9.68 0.00 40.13 3.84
409 410 0.755079 TAGCCACTGAGCCTGCATAG 59.245 55.000 0.00 0.00 0.00 2.23
410 411 0.755079 CTAGCCACTGAGCCTGCATA 59.245 55.000 0.00 0.00 0.00 3.14
411 412 0.979709 TCTAGCCACTGAGCCTGCAT 60.980 55.000 0.00 0.00 0.00 3.96
412 413 0.979709 ATCTAGCCACTGAGCCTGCA 60.980 55.000 0.00 0.00 0.00 4.41
413 414 0.532417 CATCTAGCCACTGAGCCTGC 60.532 60.000 0.00 0.00 0.00 4.85
414 415 0.106335 CCATCTAGCCACTGAGCCTG 59.894 60.000 0.00 0.00 0.00 4.85
415 416 0.326048 ACCATCTAGCCACTGAGCCT 60.326 55.000 0.00 0.00 0.00 4.58
416 417 0.179062 CACCATCTAGCCACTGAGCC 60.179 60.000 0.00 0.00 0.00 4.70
417 418 0.179062 CCACCATCTAGCCACTGAGC 60.179 60.000 0.00 0.00 0.00 4.26
418 419 0.467384 CCCACCATCTAGCCACTGAG 59.533 60.000 0.00 0.00 0.00 3.35
419 420 0.042581 TCCCACCATCTAGCCACTGA 59.957 55.000 0.00 0.00 0.00 3.41
420 421 0.179000 GTCCCACCATCTAGCCACTG 59.821 60.000 0.00 0.00 0.00 3.66
421 422 1.330655 CGTCCCACCATCTAGCCACT 61.331 60.000 0.00 0.00 0.00 4.00
422 423 1.144057 CGTCCCACCATCTAGCCAC 59.856 63.158 0.00 0.00 0.00 5.01
423 424 1.001120 TCGTCCCACCATCTAGCCA 59.999 57.895 0.00 0.00 0.00 4.75
424 425 1.742768 CTCGTCCCACCATCTAGCC 59.257 63.158 0.00 0.00 0.00 3.93
425 426 0.755698 TCCTCGTCCCACCATCTAGC 60.756 60.000 0.00 0.00 0.00 3.42
426 427 1.323412 CTCCTCGTCCCACCATCTAG 58.677 60.000 0.00 0.00 0.00 2.43
427 428 0.106167 CCTCCTCGTCCCACCATCTA 60.106 60.000 0.00 0.00 0.00 1.98
428 429 1.381872 CCTCCTCGTCCCACCATCT 60.382 63.158 0.00 0.00 0.00 2.90
429 430 1.677637 GACCTCCTCGTCCCACCATC 61.678 65.000 0.00 0.00 0.00 3.51
430 431 1.686110 GACCTCCTCGTCCCACCAT 60.686 63.158 0.00 0.00 0.00 3.55
431 432 2.283676 GACCTCCTCGTCCCACCA 60.284 66.667 0.00 0.00 0.00 4.17
432 433 3.450115 CGACCTCCTCGTCCCACC 61.450 72.222 0.00 0.00 37.64 4.61
433 434 3.450115 CCGACCTCCTCGTCCCAC 61.450 72.222 0.00 0.00 41.18 4.61
434 435 4.753662 CCCGACCTCCTCGTCCCA 62.754 72.222 0.00 0.00 41.18 4.37
440 441 3.551407 GATGGCCCCGACCTCCTC 61.551 72.222 0.00 0.00 0.00 3.71
443 444 3.171388 ATGGATGGCCCCGACCTC 61.171 66.667 0.00 0.00 0.00 3.85
444 445 3.492353 CATGGATGGCCCCGACCT 61.492 66.667 0.00 0.00 0.00 3.85
445 446 4.586235 CCATGGATGGCCCCGACC 62.586 72.222 5.56 0.00 41.75 4.79
473 474 4.106925 CACCCAGGCCAGAGCTCC 62.107 72.222 10.93 0.00 39.73 4.70
474 475 4.106925 CCACCCAGGCCAGAGCTC 62.107 72.222 5.01 5.27 39.73 4.09
475 476 4.990910 ACCACCCAGGCCAGAGCT 62.991 66.667 5.01 0.00 43.14 4.09
476 477 4.416738 GACCACCCAGGCCAGAGC 62.417 72.222 5.01 0.00 43.14 4.09
477 478 4.087892 CGACCACCCAGGCCAGAG 62.088 72.222 5.01 0.00 43.14 3.35
519 520 4.803426 CTCCACCTCGCGACCAGC 62.803 72.222 3.71 0.00 43.95 4.85
520 521 4.135153 CCTCCACCTCGCGACCAG 62.135 72.222 3.71 0.00 0.00 4.00
527 528 3.151022 GAGCTCCCCTCCACCTCG 61.151 72.222 0.87 0.00 34.35 4.63
528 529 3.151022 CGAGCTCCCCTCCACCTC 61.151 72.222 8.47 0.00 37.27 3.85
529 530 3.670629 CTCGAGCTCCCCTCCACCT 62.671 68.421 8.47 0.00 37.27 4.00
530 531 3.151022 CTCGAGCTCCCCTCCACC 61.151 72.222 8.47 0.00 37.27 4.61
531 532 1.045911 ATTCTCGAGCTCCCCTCCAC 61.046 60.000 7.81 0.00 37.27 4.02
532 533 1.045350 CATTCTCGAGCTCCCCTCCA 61.045 60.000 7.81 0.00 37.27 3.86
533 534 1.745264 CATTCTCGAGCTCCCCTCC 59.255 63.158 7.81 0.00 37.27 4.30
534 535 1.745264 CCATTCTCGAGCTCCCCTC 59.255 63.158 7.81 0.00 37.22 4.30
535 536 1.764054 CCCATTCTCGAGCTCCCCT 60.764 63.158 7.81 0.00 0.00 4.79
536 537 1.338136 TTCCCATTCTCGAGCTCCCC 61.338 60.000 7.81 0.00 0.00 4.81
537 538 0.105778 CTTCCCATTCTCGAGCTCCC 59.894 60.000 7.81 0.00 0.00 4.30
538 539 0.105778 CCTTCCCATTCTCGAGCTCC 59.894 60.000 7.81 0.00 0.00 4.70
539 540 1.068434 CTCCTTCCCATTCTCGAGCTC 59.932 57.143 7.81 2.73 0.00 4.09
540 541 1.118838 CTCCTTCCCATTCTCGAGCT 58.881 55.000 7.81 0.00 0.00 4.09
541 542 1.115467 TCTCCTTCCCATTCTCGAGC 58.885 55.000 7.81 0.00 0.00 5.03
542 543 2.102252 CCTTCTCCTTCCCATTCTCGAG 59.898 54.545 5.93 5.93 0.00 4.04
543 544 2.111384 CCTTCTCCTTCCCATTCTCGA 58.889 52.381 0.00 0.00 0.00 4.04
544 545 2.102252 CTCCTTCTCCTTCCCATTCTCG 59.898 54.545 0.00 0.00 0.00 4.04
545 546 3.379452 TCTCCTTCTCCTTCCCATTCTC 58.621 50.000 0.00 0.00 0.00 2.87
546 547 3.383223 CTCTCCTTCTCCTTCCCATTCT 58.617 50.000 0.00 0.00 0.00 2.40
547 548 2.437651 CCTCTCCTTCTCCTTCCCATTC 59.562 54.545 0.00 0.00 0.00 2.67
548 549 2.226013 ACCTCTCCTTCTCCTTCCCATT 60.226 50.000 0.00 0.00 0.00 3.16
549 550 1.367848 ACCTCTCCTTCTCCTTCCCAT 59.632 52.381 0.00 0.00 0.00 4.00
550 551 0.793617 ACCTCTCCTTCTCCTTCCCA 59.206 55.000 0.00 0.00 0.00 4.37
551 552 1.199615 CACCTCTCCTTCTCCTTCCC 58.800 60.000 0.00 0.00 0.00 3.97
552 553 0.539518 GCACCTCTCCTTCTCCTTCC 59.460 60.000 0.00 0.00 0.00 3.46
553 554 1.480545 GAGCACCTCTCCTTCTCCTTC 59.519 57.143 0.00 0.00 35.77 3.46
554 555 1.567357 GAGCACCTCTCCTTCTCCTT 58.433 55.000 0.00 0.00 35.77 3.36
555 556 0.682855 CGAGCACCTCTCCTTCTCCT 60.683 60.000 0.00 0.00 38.62 3.69
556 557 0.968393 ACGAGCACCTCTCCTTCTCC 60.968 60.000 0.00 0.00 38.62 3.71
557 558 0.172352 CACGAGCACCTCTCCTTCTC 59.828 60.000 0.00 0.00 38.62 2.87
558 559 0.251386 TCACGAGCACCTCTCCTTCT 60.251 55.000 0.00 0.00 38.62 2.85
559 560 0.172352 CTCACGAGCACCTCTCCTTC 59.828 60.000 0.00 0.00 38.62 3.46
560 561 1.254284 CCTCACGAGCACCTCTCCTT 61.254 60.000 0.00 0.00 38.62 3.36
561 562 1.680651 CCTCACGAGCACCTCTCCT 60.681 63.158 0.00 0.00 38.62 3.69
562 563 2.716017 CCCTCACGAGCACCTCTCC 61.716 68.421 0.00 0.00 38.62 3.71
563 564 1.662438 CTCCCTCACGAGCACCTCTC 61.662 65.000 0.00 0.00 38.47 3.20
564 565 1.680651 CTCCCTCACGAGCACCTCT 60.681 63.158 0.00 0.00 0.00 3.69
565 566 1.662438 CTCTCCCTCACGAGCACCTC 61.662 65.000 0.00 0.00 0.00 3.85
566 567 1.680651 CTCTCCCTCACGAGCACCT 60.681 63.158 0.00 0.00 0.00 4.00
567 568 2.716017 CCTCTCCCTCACGAGCACC 61.716 68.421 0.00 0.00 0.00 5.01
568 569 2.716017 CCCTCTCCCTCACGAGCAC 61.716 68.421 0.00 0.00 0.00 4.40
569 570 2.363018 CCCTCTCCCTCACGAGCA 60.363 66.667 0.00 0.00 0.00 4.26
570 571 2.937959 ATCCCCTCTCCCTCACGAGC 62.938 65.000 0.00 0.00 0.00 5.03
571 572 0.825840 GATCCCCTCTCCCTCACGAG 60.826 65.000 0.00 0.00 0.00 4.18
572 573 1.230497 GATCCCCTCTCCCTCACGA 59.770 63.158 0.00 0.00 0.00 4.35
573 574 2.196925 CGATCCCCTCTCCCTCACG 61.197 68.421 0.00 0.00 0.00 4.35
574 575 1.834822 CCGATCCCCTCTCCCTCAC 60.835 68.421 0.00 0.00 0.00 3.51
575 576 2.609339 CCGATCCCCTCTCCCTCA 59.391 66.667 0.00 0.00 0.00 3.86
576 577 2.100525 ATCCCGATCCCCTCTCCCTC 62.101 65.000 0.00 0.00 0.00 4.30
577 578 2.100525 GATCCCGATCCCCTCTCCCT 62.101 65.000 0.00 0.00 31.76 4.20
578 579 1.610967 GATCCCGATCCCCTCTCCC 60.611 68.421 0.00 0.00 31.76 4.30
579 580 0.902516 CTGATCCCGATCCCCTCTCC 60.903 65.000 2.31 0.00 37.02 3.71
580 581 0.902516 CCTGATCCCGATCCCCTCTC 60.903 65.000 2.31 0.00 37.02 3.20
581 582 1.157276 CCTGATCCCGATCCCCTCT 59.843 63.158 2.31 0.00 37.02 3.69
582 583 2.588201 GCCTGATCCCGATCCCCTC 61.588 68.421 2.31 0.00 37.02 4.30
583 584 2.527875 GCCTGATCCCGATCCCCT 60.528 66.667 2.31 0.00 37.02 4.79
584 585 2.849162 TGCCTGATCCCGATCCCC 60.849 66.667 2.31 0.00 37.02 4.81
585 586 2.427753 GTGCCTGATCCCGATCCC 59.572 66.667 2.31 0.00 37.02 3.85
586 587 2.427753 GGTGCCTGATCCCGATCC 59.572 66.667 2.31 0.00 37.02 3.36
587 588 2.029666 CGGTGCCTGATCCCGATC 59.970 66.667 1.50 0.00 44.41 3.69
588 589 3.550431 CCGGTGCCTGATCCCGAT 61.550 66.667 8.70 0.00 44.41 4.18
591 592 3.282374 AAACCCGGTGCCTGATCCC 62.282 63.158 0.00 0.00 0.00 3.85
592 593 1.749258 GAAACCCGGTGCCTGATCC 60.749 63.158 0.00 0.00 0.00 3.36
593 594 1.026718 CAGAAACCCGGTGCCTGATC 61.027 60.000 12.02 0.00 0.00 2.92
594 595 1.002134 CAGAAACCCGGTGCCTGAT 60.002 57.895 12.02 0.00 0.00 2.90
595 596 2.429930 CAGAAACCCGGTGCCTGA 59.570 61.111 12.02 0.00 0.00 3.86
596 597 2.672996 CCAGAAACCCGGTGCCTG 60.673 66.667 0.00 10.90 0.00 4.85
597 598 4.660938 GCCAGAAACCCGGTGCCT 62.661 66.667 0.00 0.00 0.00 4.75
614 615 4.570663 CTACCTTCCCTCGCGCCG 62.571 72.222 0.00 0.00 0.00 6.46
615 616 3.459063 ACTACCTTCCCTCGCGCC 61.459 66.667 0.00 0.00 0.00 6.53
616 617 2.202756 CACTACCTTCCCTCGCGC 60.203 66.667 0.00 0.00 0.00 6.86
617 618 0.460311 ATTCACTACCTTCCCTCGCG 59.540 55.000 0.00 0.00 0.00 5.87
618 619 2.280628 CAATTCACTACCTTCCCTCGC 58.719 52.381 0.00 0.00 0.00 5.03
619 620 2.280628 GCAATTCACTACCTTCCCTCG 58.719 52.381 0.00 0.00 0.00 4.63
620 621 3.350219 TGCAATTCACTACCTTCCCTC 57.650 47.619 0.00 0.00 0.00 4.30
621 622 3.806949 TTGCAATTCACTACCTTCCCT 57.193 42.857 0.00 0.00 0.00 4.20
622 623 4.864704 TTTTGCAATTCACTACCTTCCC 57.135 40.909 0.00 0.00 0.00 3.97
752 753 0.796312 AATCGTGTTAACTGCGGCAG 59.204 50.000 27.43 27.43 37.52 4.85
907 910 2.879756 GCAGAGGAGTGAGAGTGAGAGT 60.880 54.545 0.00 0.00 0.00 3.24
1188 1212 2.557869 TCTATAGTGGTGCCAGGGTTT 58.442 47.619 0.00 0.00 0.00 3.27
1545 1589 9.835389 ACTAACAACCACTAACACAATTAACTA 57.165 29.630 0.00 0.00 0.00 2.24
1565 1609 8.896320 TTTACTGAATTTACTGCAGACTAACA 57.104 30.769 23.35 11.67 33.94 2.41
1713 1776 7.280876 GCAGATACAATAGACATTCAGGAAACA 59.719 37.037 0.00 0.00 0.00 2.83
1872 1935 7.504911 CCATATCTTCTCCAAACATCTTTCCAT 59.495 37.037 0.00 0.00 0.00 3.41
1875 1938 7.056635 TCCCATATCTTCTCCAAACATCTTTC 58.943 38.462 0.00 0.00 0.00 2.62
1906 1969 2.943690 CTGCCACAATTCTCCTCATGAG 59.056 50.000 16.24 16.24 42.90 2.90
2076 2139 3.261643 TCCATCTGCTTCTGCTTGAACTA 59.738 43.478 0.00 0.00 40.48 2.24
2898 2976 4.834406 AGGATGAGGTGGAGTAGGATTA 57.166 45.455 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.