AutoCloner

Multiple sequence alignment - TraesCS6A01G206600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G206600	chr6A	100.000	2753	0	0	1	2753	364308966	364306214	0.000000e+00	5084.0
1	TraesCS6A01G206600	chr6B	91.993	1661	121	7	828	2482	354954945	354956599	0.000000e+00	2320.0
2	TraesCS6A01G206600	chr6B	91.209	273	22	2	552	822	28058103	28057831	1.200000e-98	370.0
3	TraesCS6A01G206600	chr6B	76.812	207	43	5	2549	2753	398863604	398863807	8.060000e-21	111.0
4	TraesCS6A01G206600	chr6B	76.623	154	34	2	2259	2411	8103914	8103762	1.760000e-12	84.2
5	TraesCS6A01G206600	chr6D	95.463	1058	34	2	828	1885	254551464	254552507	0.000000e+00	1676.0
6	TraesCS6A01G206600	chr6D	91.739	811	64	2	1944	2753	254552587	254553395	0.000000e+00	1123.0
7	TraesCS6A01G206600	chr4D	93.585	1060	63	3	833	1891	20897931	20898986	0.000000e+00	1576.0
8	TraesCS6A01G206600	chr4D	88.000	425	36	8	10	428	461372316	461371901	3.190000e-134	488.0
9	TraesCS6A01G206600	chr4D	81.281	203	37	1	2549	2751	148468257	148468458	2.190000e-36	163.0
10	TraesCS6A01G206600	chr4D	76.585	205	42	6	2549	2751	256136260	256136060	1.040000e-19	108.0
11	TraesCS6A01G206600	chr2B	93.617	423	22	4	7	428	171011946	171011528	6.470000e-176	627.0
12	TraesCS6A01G206600	chr2B	94.737	380	18	2	49	428	621317201	621316824	8.490000e-165	590.0
13	TraesCS6A01G206600	chr2B	94.226	381	20	2	48	428	91605679	91605301	5.110000e-162	580.0
14	TraesCS6A01G206600	chr2B	94.459	379	18	3	51	428	170783808	170784184	5.110000e-162	580.0
15	TraesCS6A01G206600	chr2B	92.732	399	25	4	427	822	170784318	170784715	8.550000e-160	573.0
16	TraesCS6A01G206600	chr2B	90.954	409	31	4	427	830	171011410	171011003	1.860000e-151	545.0
17	TraesCS6A01G206600	chr2B	90.571	403	31	4	427	822	621316690	621316288	6.750000e-146	527.0
18	TraesCS6A01G206600	chr2B	88.756	418	25	11	427	822	91605167	91604750	2.460000e-135	492.0
19	TraesCS6A01G206600	chr2B	75.706	177	39	4	2218	2392	246361574	246361400	4.880000e-13	86.1
20	TraesCS6A01G206600	chr7B	94.211	380	17	3	49	428	424053152	424053526	2.380000e-160	575.0
21	TraesCS6A01G206600	chr7B	91.479	399	31	3	427	822	424053660	424054058	1.860000e-151	545.0
22	TraesCS6A01G206600	chr4B	93.947	380	21	2	49	428	81013574	81013951	8.550000e-160	573.0
23	TraesCS6A01G206600	chr4B	89.474	418	22	11	427	822	81014084	81014501	2.450000e-140	508.0
24	TraesCS6A01G206600	chr1B	92.105	380	12	6	49	428	630537050	630536689	1.130000e-143	520.0
25	TraesCS6A01G206600	chr1B	89.975	399	37	3	427	822	630536554	630536156	1.890000e-141	512.0
26	TraesCS6A01G206600	chr1B	76.608	171	38	2	2218	2387	137526466	137526297	2.920000e-15	93.5
27	TraesCS6A01G206600	chr1B	96.154	52	2	0	2549	2600	3900244	3900295	4.880000e-13	86.1
28	TraesCS6A01G206600	chr7D	87.844	436	39	8	2	430	30758300	30757872	1.470000e-137	499.0
29	TraesCS6A01G206600	chr7D	87.435	191	15	5	427	616	30757733	30757551	7.720000e-51	211.0
30	TraesCS6A01G206600	chr5B	91.209	273	22	2	552	822	586323851	586324123	1.200000e-98	370.0
31	TraesCS6A01G206600	chr5B	77.483	151	30	4	2263	2411	421858935	421858787	1.360000e-13	87.9
32	TraesCS6A01G206600	chr5B	77.241	145	33	0	2267	2411	596713445	596713301	4.880000e-13	86.1
33	TraesCS6A01G206600	chr1D	90.741	216	17	3	1	214	399175871	399176085	4.490000e-73	285.0
34	TraesCS6A01G206600	chr1D	78.922	204	42	1	2549	2752	317101597	317101395	1.330000e-28	137.0
35	TraesCS6A01G206600	chr1D	78.095	210	36	8	2549	2753	164775238	164775034	1.040000e-24	124.0
36	TraesCS6A01G206600	chr4A	94.326	141	6	2	289	428	697983070	697983209	5.970000e-52	215.0
37	TraesCS6A01G206600	chr4A	82.192	146	26	0	2608	2753	369401757	369401612	2.880000e-25	126.0
38	TraesCS6A01G206600	chr3B	90.984	122	11	0	2632	2753	307584977	307585098	6.100000e-37	165.0
39	TraesCS6A01G206600	chr3B	88.235	51	6	0	2550	2600	344284288	344284338	8.230000e-06	62.1
40	TraesCS6A01G206600	chr1A	80.296	203	38	1	2549	2751	279900201	279900401	4.750000e-33	152.0
41	TraesCS6A01G206600	chr1A	75.410	183	36	9	2209	2387	159075020	159075197	2.270000e-11	80.5
42	TraesCS6A01G206600	chr2D	81.356	118	22	0	2270	2387	155417086	155417203	2.260000e-16	97.1
43	TraesCS6A01G206600	chr3D	75.974	154	33	4	2259	2411	168848732	168848582	2.940000e-10	76.8
44	TraesCS6A01G206600	chr7A	100.000	28	0	0	2579	2606	174667168	174667195	5.000000e-03	52.8
45	TraesCS6A01G206600	chr5D	82.540	63	8	3	2545	2606	73595018	73594958	5.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G206600	chr6A	364306214	364308966	2752	True	5084.0	5084	100.0000	1	2753	1	chr6A.!!$R1	2752
1	TraesCS6A01G206600	chr6B	354954945	354956599	1654	False	2320.0	2320	91.9930	828	2482	1	chr6B.!!$F1	1654
2	TraesCS6A01G206600	chr6D	254551464	254553395	1931	False	1399.5	1676	93.6010	828	2753	2	chr6D.!!$F1	1925
3	TraesCS6A01G206600	chr4D	20897931	20898986	1055	False	1576.0	1576	93.5850	833	1891	1	chr4D.!!$F1	1058
4	TraesCS6A01G206600	chr2B	171011003	171011946	943	True	586.0	627	92.2855	7	830	2	chr2B.!!$R3	823
5	TraesCS6A01G206600	chr2B	170783808	170784715	907	False	576.5	580	93.5955	51	822	2	chr2B.!!$F1	771
6	TraesCS6A01G206600	chr2B	621316288	621317201	913	True	558.5	590	92.6540	49	822	2	chr2B.!!$R4	773
7	TraesCS6A01G206600	chr2B	91604750	91605679	929	True	536.0	580	91.4910	48	822	2	chr2B.!!$R2	774
8	TraesCS6A01G206600	chr7B	424053152	424054058	906	False	560.0	575	92.8450	49	822	2	chr7B.!!$F1	773
9	TraesCS6A01G206600	chr4B	81013574	81014501	927	False	540.5	573	91.7105	49	822	2	chr4B.!!$F1	773
10	TraesCS6A01G206600	chr1B	630536156	630537050	894	True	516.0	520	91.0400	49	822	2	chr1B.!!$R2	773
11	TraesCS6A01G206600	chr7D	30757551	30758300	749	True	355.0	499	87.6395	2	616	2	chr7D.!!$R1	614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
996	1195	0.741221	CCACTAACTGAGCTTCGCCC	60.741	60.0	0.0	0.0	0.0	6.13	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1930	2135	0.099436	GCGTCATTGCCATGAGGAAC	59.901	55.0	20.94	4.07	44.78	3.62	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
30	32	4.698304	GGTGAAACTCCACCGATTAAATGA	59.302	41.667	0.00	0.00	46.00	2.57
115	117	2.831685	AATGCTTGACACAGACCGTA	57.168	45.000	0.00	0.00	0.00	4.02
481	640	3.106242	ACTAACAATGCGTGTCACAGA	57.894	42.857	3.42	0.00	40.60	3.41
589	786	3.245229	ACACCAGCCATCTTAAATGGTCA	60.245	43.478	14.31	0.00	42.29	4.02
613	810	1.210204	AAGATGCTGCCTCTCCCCAA	61.210	55.000	7.90	0.00	0.00	4.12
624	821	1.152567	CTCCCCAACCCAGCAACAA	60.153	57.895	0.00	0.00	0.00	2.83
639	836	6.376978	CCAGCAACAAAGAGAAGTTAATGAG	58.623	40.000	0.00	0.00	0.00	2.90
653	850	6.796705	AGTTAATGAGTAAAGGTTTGGTCG	57.203	37.500	0.00	0.00	0.00	4.79
681	878	5.857471	TCCAATTCATTTAAGATGCCCAG	57.143	39.130	0.00	0.00	0.00	4.45
683	880	4.100498	CCAATTCATTTAAGATGCCCAGCT	59.900	41.667	0.00	0.00	0.00	4.24
686	883	3.466836	TCATTTAAGATGCCCAGCTACG	58.533	45.455	0.00	0.00	0.00	3.51
779	977	2.876550	GCTAATCTCACAGCATGCATGA	59.123	45.455	30.64	20.74	42.53	3.07
822	1021	2.053244	TGGCACCATGTCCCAAAAATT	58.947	42.857	0.00	0.00	0.00	1.82
825	1024	3.328505	GCACCATGTCCCAAAAATTCAG	58.671	45.455	0.00	0.00	0.00	3.02
935	1134	5.039645	AGAAAATAATCTCCTGGACCTGGA	58.960	41.667	18.40	18.40	0.00	3.86
936	1135	4.779993	AAATAATCTCCTGGACCTGGAC	57.220	45.455	15.82	0.00	0.00	4.02
976	1175	0.813184	TCGTTCGGACATACTCCACC	59.187	55.000	0.00	0.00	39.39	4.61
996	1195	0.741221	CCACTAACTGAGCTTCGCCC	60.741	60.000	0.00	0.00	0.00	6.13
1194	1393	3.660111	GCAACGGCGGCACTTTCT	61.660	61.111	13.24	0.00	0.00	2.52
1868	2073	7.953752	TGATATGAATTGCCATATTGCTTCAA	58.046	30.769	7.32	0.00	39.20	2.69
1903	2108	2.306255	TAGATGCGCCTTTCGGTCCC	62.306	60.000	4.18	0.00	38.94	4.46
1916	2121	5.397559	CCTTTCGGTCCCTAATAACTCCATT	60.398	44.000	0.00	0.00	0.00	3.16
1930	2135	5.437191	AACTCCATTAAAGTGGGAGGTAG	57.563	43.478	11.26	1.74	46.66	3.18
1935	2140	5.998533	TCCATTAAAGTGGGAGGTAGTTCCT	60.999	44.000	0.00	0.00	42.84	3.36
1964	2210	0.238553	GACGCTTTCCTGGTTGCTTC	59.761	55.000	0.00	0.00	0.00	3.86
1967	2213	0.827507	GCTTTCCTGGTTGCTTCCCA	60.828	55.000	0.00	0.00	0.00	4.37
1968	2214	1.928868	CTTTCCTGGTTGCTTCCCAT	58.071	50.000	0.00	0.00	0.00	4.00
1974	2220	4.044308	TCCTGGTTGCTTCCCATTCTATA	58.956	43.478	0.00	0.00	0.00	1.31
1975	2221	4.137543	CCTGGTTGCTTCCCATTCTATAC	58.862	47.826	0.00	0.00	0.00	1.47
1979	2225	4.141482	GGTTGCTTCCCATTCTATACAGGA	60.141	45.833	0.00	0.00	0.00	3.86
1982	2228	6.266131	TGCTTCCCATTCTATACAGGATTT	57.734	37.500	0.00	0.00	0.00	2.17
1983	2229	6.672593	TGCTTCCCATTCTATACAGGATTTT	58.327	36.000	0.00	0.00	0.00	1.82
2051	2297	1.714794	CAGGGTACGAAACAGAGCAG	58.285	55.000	0.00	0.00	0.00	4.24
2078	2324	4.214758	ACCAACGAAACAGTAAACCATAGC	59.785	41.667	0.00	0.00	0.00	2.97
2116	2362	1.291877	GGCACGCAGACTAACACAGG	61.292	60.000	0.00	0.00	0.00	4.00
2124	2370	1.566018	GACTAACACAGGCACGGCAC	61.566	60.000	0.00	0.00	29.64	5.01
2156	2402	6.961359	AAAAAGCAACAAACTAACAGGAAC	57.039	33.333	0.00	0.00	0.00	3.62
2163	2409	4.377897	ACAAACTAACAGGAACGAGAAGG	58.622	43.478	0.00	0.00	0.00	3.46
2167	2413	0.693049	AACAGGAACGAGAAGGGCAT	59.307	50.000	0.00	0.00	0.00	4.40
2204	2450	1.945394	CCATCAGGATTTTGCGGAGAG	59.055	52.381	0.00	0.00	36.89	3.20
2234	2480	1.388431	GCAGAAGCTCGAACTTTCTCG	59.612	52.381	2.02	1.85	40.25	4.04
2246	2492	2.693069	ACTTTCTCGATCAGCACCTTG	58.307	47.619	0.00	0.00	0.00	3.61
2268	2514	2.785425	GCATCCCAATCGGCAACCC	61.785	63.158	0.00	0.00	0.00	4.11
2339	2585	4.023707	CAGTCAGTGGGCTTGTTAAAGAAG	60.024	45.833	0.00	0.00	35.19	2.85
2466	2713	1.817357	CACATGGAGCTCTGCAAAGA	58.183	50.000	14.64	0.00	33.77	2.52
2471	2718	4.282703	ACATGGAGCTCTGCAAAGAAATTT	59.717	37.500	14.64	0.00	33.77	1.82
2478	2725	4.502087	GCTCTGCAAAGAAATTTGGTTCCT	60.502	41.667	0.00	0.00	32.78	3.36
2483	2730	5.779771	TGCAAAGAAATTTGGTTCCTAGGAT	59.220	36.000	13.57	0.00	32.78	3.24
2498	2745	3.309994	CCTAGGATACCCCCATCTAGGAC	60.310	56.522	1.05	0.00	36.89	3.85
2549	2796	7.063780	GCCAAGACACATCCAAAGAAAATATTG	59.936	37.037	0.00	0.00	0.00	1.90
2589	2836	2.567985	GACCCAAGAAAGGTTCGAACA	58.432	47.619	28.24	0.00	37.88	3.18
2596	2843	0.549469	AAAGGTTCGAACACTGGGGT	59.451	50.000	28.24	6.73	0.00	4.95
2606	2853	2.805897	CACTGGGGTGTGCTTGAAA	58.194	52.632	0.00	0.00	38.54	2.69
2613	2860	1.205893	GGGTGTGCTTGAAAAACCACA	59.794	47.619	0.00	0.00	36.28	4.17
2636	2883	3.330267	CAAACTCTAGTTCTCTGCCCAC	58.670	50.000	0.00	0.00	37.25	4.61
2643	2890	1.537397	TTCTCTGCCCACTGCCTCT	60.537	57.895	0.00	0.00	40.16	3.69
2649	2896	4.135153	CCCACTGCCTCTCGACGG	62.135	72.222	0.00	0.00	0.00	4.79
2657	2904	3.584052	CTCTCGACGGCCCTACGG	61.584	72.222	0.00	0.00	38.39	4.02
2740	2987	1.636148	TGCGGTGTAAGACCCTACTT	58.364	50.000	0.00	0.00	42.62	2.24
2744	2991	2.824341	CGGTGTAAGACCCTACTTCTGT	59.176	50.000	0.00	0.00	42.62	3.41
2745	2992	3.257624	CGGTGTAAGACCCTACTTCTGTT	59.742	47.826	0.00	0.00	42.62	3.16

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
9	10	5.163663	GCATCATTTAATCGGTGGAGTTTCA	60.164	40.000	0.00	0.00	0.00	2.69
45	47	7.685155	GCACTGGCAGAATATTAATTCACCAAT	60.685	37.037	23.66	2.87	43.96	3.16
204	209	8.351461	ACGAAAATTACCATTCCGACTTAAAAA	58.649	29.630	0.00	0.00	0.00	1.94
420	432	9.625747	TTGCTCATCAGTGGTATGATTTTTATA	57.374	29.630	0.00	0.00	37.84	0.98
432	587	3.430042	AATCACTTGCTCATCAGTGGT	57.570	42.857	0.00	0.00	33.52	4.16
545	709	0.108329	AATGCCGGTGAGGTCTAACG	60.108	55.000	1.90	0.00	43.70	3.18
589	786	1.134159	GGAGAGGCAGCATCTTGATGT	60.134	52.381	11.66	0.00	35.94	3.06
613	810	2.736670	ACTTCTCTTTGTTGCTGGGT	57.263	45.000	0.00	0.00	0.00	4.51
624	821	9.067986	CCAAACCTTTACTCATTAACTTCTCTT	57.932	33.333	0.00	0.00	0.00	2.85
639	836	5.723295	TGGATAGTACGACCAAACCTTTAC	58.277	41.667	6.32	0.00	0.00	2.01
653	850	8.515414	GGGCATCTTAAATGAATTGGATAGTAC	58.485	37.037	0.00	0.00	0.00	2.73
681	878	9.953825	GCAAATATGTGTATATTAGTTCGTAGC	57.046	33.333	0.00	0.00	38.27	3.58
721	919	9.935682	GTGATTAAATGAATACATGAACGTCAT	57.064	29.630	0.00	0.00	37.65	3.06
822	1021	2.962569	CCGTTGAGAGCGACCTGA	59.037	61.111	0.00	0.00	0.00	3.86
935	1134	1.408266	GGTGAGGTTCTGTTGGTGTGT	60.408	52.381	0.00	0.00	0.00	3.72
936	1135	1.308998	GGTGAGGTTCTGTTGGTGTG	58.691	55.000	0.00	0.00	0.00	3.82
1123	1322	2.338620	CGTGGAGGACTGCGTCAA	59.661	61.111	10.14	0.00	33.68	3.18
1296	1495	3.062909	CGAAGAACCTCTCTCTGACGTAG	59.937	52.174	0.00	0.00	31.02	3.51
1395	1594	2.276869	CCACGACATGGTCTCCAGA	58.723	57.895	0.00	0.00	44.46	3.86
1798	2003	1.453155	ATTGACACATGACGGAAGGC	58.547	50.000	0.00	0.00	42.12	4.35
1893	2098	4.748277	TGGAGTTATTAGGGACCGAAAG	57.252	45.455	0.00	0.00	0.00	2.62
1903	2108	7.574607	ACCTCCCACTTTAATGGAGTTATTAG	58.425	38.462	0.00	0.00	43.42	1.73
1928	2133	2.905075	CGTCATTGCCATGAGGAACTA	58.095	47.619	13.64	0.00	44.78	2.24
1930	2135	0.099436	GCGTCATTGCCATGAGGAAC	59.901	55.000	20.94	4.07	44.78	3.62
1935	2140	0.810648	GGAAAGCGTCATTGCCATGA	59.189	50.000	0.00	0.00	37.05	3.07
1942	2188	0.598065	GCAACCAGGAAAGCGTCATT	59.402	50.000	0.00	0.00	0.00	2.57
2003	2249	8.465273	AATGGCTTTATCTATAAAGTTGGACC	57.535	34.615	18.85	13.23	46.78	4.46
2035	2281	0.320421	TGCCTGCTCTGTTTCGTACC	60.320	55.000	0.00	0.00	0.00	3.34
2051	2297	3.110358	GTTTACTGTTTCGTTGGTTGCC	58.890	45.455	0.00	0.00	0.00	4.52
2078	2324	0.523072	CGAGGTTGTTGGCCTTGATG	59.477	55.000	3.32	0.00	39.36	3.07
2108	2354	2.663520	CGTGCCGTGCCTGTGTTA	60.664	61.111	0.00	0.00	0.00	2.41
2137	2383	3.537580	TCGTTCCTGTTAGTTTGTTGCT	58.462	40.909	0.00	0.00	0.00	3.91
2156	2402	3.808728	TCATTCCTAAATGCCCTTCTCG	58.191	45.455	0.00	0.00	41.76	4.04
2163	2409	0.954452	CGGGCTCATTCCTAAATGCC	59.046	55.000	0.00	0.00	41.76	4.40
2167	2413	1.281419	TGGTCGGGCTCATTCCTAAA	58.719	50.000	0.00	0.00	0.00	1.85
2204	2450	4.475135	GCTTCTGCCGTCTCCCCC	62.475	72.222	0.00	0.00	0.00	5.40
2234	2480	2.211806	GATGCTCTCAAGGTGCTGATC	58.788	52.381	0.00	0.00	35.67	2.92
2246	2492	0.464373	TTGCCGATTGGGATGCTCTC	60.464	55.000	0.00	0.00	38.47	3.20
2268	2514	4.370049	CAGCAGTGGAGATCATTGACTAG	58.630	47.826	0.00	0.00	35.40	2.57
2439	2685	1.912043	AGAGCTCCATGTGCTTACCTT	59.088	47.619	10.93	0.00	41.30	3.50
2466	2713	4.078805	GGGGGTATCCTAGGAACCAAATTT	60.079	45.833	29.11	12.16	34.83	1.82
2471	2718	1.028638	TGGGGGTATCCTAGGAACCA	58.971	55.000	29.11	22.52	34.83	3.67
2478	2725	2.658489	GGTCCTAGATGGGGGTATCCTA	59.342	54.545	0.00	0.00	36.20	2.94
2483	2730	3.760787	GCATTAGGTCCTAGATGGGGGTA	60.761	52.174	16.44	0.00	36.20	3.69
2498	2745	1.766494	TGGCCTGATGTTGCATTAGG	58.234	50.000	13.53	13.53	0.00	2.69
2589	2836	1.480545	GTTTTTCAAGCACACCCCAGT	59.519	47.619	0.00	0.00	0.00	4.00
2606	2853	5.104485	AGAGAACTAGAGTTTGGTGTGGTTT	60.104	40.000	0.00	0.00	38.56	3.27
2613	2860	2.303311	GGGCAGAGAACTAGAGTTTGGT	59.697	50.000	0.00	0.00	38.56	3.67
2654	2901	4.961511	TTCGCTCAAGCACGCCGT	62.962	61.111	2.50	0.00	42.21	5.68
2657	2904	1.441016	CCTTTTCGCTCAAGCACGC	60.441	57.895	2.50	0.00	42.21	5.34
2658	2905	0.586319	TTCCTTTTCGCTCAAGCACG	59.414	50.000	2.50	0.00	42.21	5.34
2659	2906	1.873591	TCTTCCTTTTCGCTCAAGCAC	59.126	47.619	2.50	0.00	42.21	4.40

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.