Multiple sequence alignment - TraesCS6A01G206500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G206500 chr6A 100.000 2324 0 0 1 2324 364050735 364048412 0.000000e+00 4292.0
1 TraesCS6A01G206500 chr6A 91.489 141 12 0 2184 2324 393225199 393225339 6.550000e-46 195.0
2 TraesCS6A01G206500 chr7B 94.773 1014 36 6 1064 2076 265435635 265434638 0.000000e+00 1563.0
3 TraesCS6A01G206500 chr7B 92.879 983 35 11 16 996 265436588 265435639 0.000000e+00 1395.0
4 TraesCS6A01G206500 chr7B 100.000 34 0 0 2078 2111 265434671 265434638 1.930000e-06 63.9
5 TraesCS6A01G206500 chr3A 87.169 491 57 6 1252 1738 732513900 732514388 9.380000e-154 553.0
6 TraesCS6A01G206500 chr3A 80.550 509 60 19 685 1165 732513403 732513900 2.840000e-94 355.0
7 TraesCS6A01G206500 chr2D 93.617 141 8 1 2185 2324 404178630 404178770 2.340000e-50 209.0
8 TraesCS6A01G206500 chr6D 93.182 132 9 0 2193 2324 388421000 388421131 6.550000e-46 195.0
9 TraesCS6A01G206500 chr5D 91.429 140 12 0 2185 2324 53816012 53815873 2.360000e-45 193.0
10 TraesCS6A01G206500 chr5D 91.489 141 11 1 2185 2324 409041100 409040960 2.360000e-45 193.0
11 TraesCS6A01G206500 chr2A 91.489 141 11 1 2185 2324 168485562 168485422 2.360000e-45 193.0
12 TraesCS6A01G206500 chr1D 91.489 141 11 1 2185 2324 332614621 332614481 2.360000e-45 193.0
13 TraesCS6A01G206500 chr3D 90.845 142 12 1 2184 2324 260284333 260284192 3.050000e-44 189.0
14 TraesCS6A01G206500 chr3D 90.714 140 13 0 2185 2324 611516601 611516740 1.100000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G206500 chr6A 364048412 364050735 2323 True 4292.0 4292 100.0000 1 2324 1 chr6A.!!$R1 2323
1 TraesCS6A01G206500 chr7B 265434638 265436588 1950 True 1007.3 1563 95.8840 16 2111 3 chr7B.!!$R1 2095
2 TraesCS6A01G206500 chr3A 732513403 732514388 985 False 454.0 553 83.8595 685 1738 2 chr3A.!!$F1 1053

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
837 840 0.320683 TCATCCTTGCCACACGTGAG 60.321 55.0 25.01 15.2 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2102 2137 0.040157 CGAACGTACCGAGACCACAA 60.04 55.0 4.5 0.0 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.736144 ACTCGTCGTAGCCATTCAAA 57.264 45.000 0.00 0.00 0.00 2.69
23 24 4.097437 ACTCGTCGTAGCCATTCAAATCTA 59.903 41.667 0.00 0.00 0.00 1.98
31 32 5.659849 AGCCATTCAAATCTATTCCCTCT 57.340 39.130 0.00 0.00 0.00 3.69
44 45 6.553857 TCTATTCCCTCTGACCCTACTTATC 58.446 44.000 0.00 0.00 0.00 1.75
45 46 4.620086 TTCCCTCTGACCCTACTTATCA 57.380 45.455 0.00 0.00 0.00 2.15
46 47 4.834406 TCCCTCTGACCCTACTTATCAT 57.166 45.455 0.00 0.00 0.00 2.45
51 52 6.100424 CCCTCTGACCCTACTTATCATTTTCT 59.900 42.308 0.00 0.00 0.00 2.52
54 55 6.061022 TGACCCTACTTATCATTTTCTGCA 57.939 37.500 0.00 0.00 0.00 4.41
60 61 7.121168 CCCTACTTATCATTTTCTGCACTTCAA 59.879 37.037 0.00 0.00 0.00 2.69
357 360 6.439675 TTTGTTCAAAACTAAAGTAGGCGT 57.560 33.333 0.00 0.00 0.00 5.68
447 450 3.146726 ATGCCAATGCCGCTCATGC 62.147 57.895 0.00 0.00 35.13 4.06
448 451 4.580551 GCCAATGCCGCTCATGCC 62.581 66.667 0.00 0.00 35.13 4.40
449 452 4.260355 CCAATGCCGCTCATGCCG 62.260 66.667 0.00 0.00 35.13 5.69
450 453 4.918129 CAATGCCGCTCATGCCGC 62.918 66.667 0.00 0.00 42.31 6.53
460 463 2.438975 CATGCCGCTCATGTGGGT 60.439 61.111 10.46 0.00 45.79 4.51
462 465 2.970379 ATGCCGCTCATGTGGGTCA 61.970 57.895 10.46 4.70 43.74 4.02
605 608 1.331214 TTCTAAACCTCGTCACCGGT 58.669 50.000 0.00 0.00 34.27 5.28
614 617 2.372690 CGTCACCGGTTGCTTCGAG 61.373 63.158 2.97 0.00 0.00 4.04
618 621 0.600255 CACCGGTTGCTTCGAGACTT 60.600 55.000 2.97 0.00 0.00 3.01
662 665 0.320771 GTGGGTGAAGCACGAGTCAT 60.321 55.000 0.00 0.00 34.83 3.06
701 704 3.718723 AGGAGGATCTTCTACAAGCAGT 58.281 45.455 4.68 0.00 33.73 4.40
767 770 9.614792 GACCACATAACTTCTTGGTATAGAAAT 57.385 33.333 0.00 0.00 42.60 2.17
837 840 0.320683 TCATCCTTGCCACACGTGAG 60.321 55.000 25.01 15.20 0.00 3.51
900 903 2.570181 GCATCCAGCCTTGTGCAC 59.430 61.111 10.75 10.75 44.83 4.57
947 950 3.969287 TCTTCCATGTGAGGTCAAGAG 57.031 47.619 0.00 0.00 0.00 2.85
996 1000 4.796231 CGGGCCCGACTCTGTTCG 62.796 72.222 41.82 7.45 42.83 3.95
997 1001 3.379445 GGGCCCGACTCTGTTCGA 61.379 66.667 5.69 0.00 41.78 3.71
999 1003 1.446272 GGCCCGACTCTGTTCGAAG 60.446 63.158 0.00 0.00 41.78 3.79
1008 1012 4.627467 CGACTCTGTTCGAAGATGGATTTT 59.373 41.667 0.00 0.00 41.78 1.82
1024 1028 2.967507 TTTTAGCACCGCCACCAGCA 62.968 55.000 0.00 0.00 44.04 4.41
1032 1036 3.807538 GCCACCAGCACTGCATCG 61.808 66.667 3.30 0.00 42.97 3.84
1038 1042 1.447314 CAGCACTGCATCGAGCTCA 60.447 57.895 15.40 1.08 45.94 4.26
1042 1046 1.267932 GCACTGCATCGAGCTCAATTC 60.268 52.381 15.40 0.00 45.94 2.17
1044 1048 0.942962 CTGCATCGAGCTCAATTCCC 59.057 55.000 15.40 0.00 45.94 3.97
1047 1051 0.882042 CATCGAGCTCAATTCCCCCG 60.882 60.000 15.40 0.00 0.00 5.73
1048 1052 2.666596 ATCGAGCTCAATTCCCCCGC 62.667 60.000 15.40 0.00 0.00 6.13
1051 1055 2.517166 GCTCAATTCCCCCGCTCC 60.517 66.667 0.00 0.00 0.00 4.70
1055 1059 2.042930 AATTCCCCCGCTCCCTCT 59.957 61.111 0.00 0.00 0.00 3.69
1056 1060 2.073101 AATTCCCCCGCTCCCTCTC 61.073 63.158 0.00 0.00 0.00 3.20
1057 1061 2.553438 AATTCCCCCGCTCCCTCTCT 62.553 60.000 0.00 0.00 0.00 3.10
1059 1063 4.150454 CCCCCGCTCCCTCTCTCT 62.150 72.222 0.00 0.00 0.00 3.10
1060 1064 2.520741 CCCCGCTCCCTCTCTCTC 60.521 72.222 0.00 0.00 0.00 3.20
1061 1065 2.600731 CCCGCTCCCTCTCTCTCT 59.399 66.667 0.00 0.00 0.00 3.10
1103 1132 1.202687 CCAAATCATGAGGCTAGCCGA 60.203 52.381 27.83 18.92 41.95 5.54
1192 1222 2.524640 TGGGTGGCCAGTACGTCA 60.525 61.111 5.11 0.00 0.00 4.35
1279 1309 1.004394 TCCTCTTCTACGAGTGCCTCA 59.996 52.381 0.00 0.00 0.00 3.86
1354 1385 2.368594 CCCTCTCCCAGTGGGCTA 59.631 66.667 24.75 12.58 41.58 3.93
1363 1394 0.465097 CCAGTGGGCTAATGCTCTGG 60.465 60.000 0.00 0.00 41.13 3.86
1421 1452 0.958822 GGTGCTTTGATTCGGTGGTT 59.041 50.000 0.00 0.00 0.00 3.67
1556 1587 6.176183 ACTTGTCTCAAACTTCCTATCATGG 58.824 40.000 0.00 0.00 0.00 3.66
1590 1622 8.421249 ACATATTTTGAAGAACTTTGATGGGA 57.579 30.769 0.00 0.00 0.00 4.37
1599 1631 4.958581 AGAACTTTGATGGGATGGAAATCC 59.041 41.667 0.00 0.00 39.99 3.01
1643 1676 7.834068 TCTGAAGAACTTGTTGTATATCAGC 57.166 36.000 6.16 0.00 34.40 4.26
1655 1688 1.306148 ATATCAGCGAGAACCGTCGA 58.694 50.000 0.00 0.00 42.85 4.20
1656 1689 0.376152 TATCAGCGAGAACCGTCGAC 59.624 55.000 5.18 5.18 42.85 4.20
1671 1704 4.561606 ACCGTCGACGAAAATATGAAGAAG 59.438 41.667 37.65 18.06 43.02 2.85
1747 1782 1.280998 GTAGTGTTGGCTATGGTGGGT 59.719 52.381 0.00 0.00 0.00 4.51
1751 1786 3.783642 AGTGTTGGCTATGGTGGGTTATA 59.216 43.478 0.00 0.00 0.00 0.98
1761 1796 2.500098 TGGTGGGTTATAGAGCAGACAC 59.500 50.000 0.00 0.00 0.00 3.67
1785 1820 4.142249 GGGAATAACATTGCTTGGTGTACC 60.142 45.833 0.00 0.00 0.00 3.34
1788 1823 2.489938 ACATTGCTTGGTGTACCGAT 57.510 45.000 0.00 0.00 39.43 4.18
1792 1827 0.682292 TGCTTGGTGTACCGATCACA 59.318 50.000 0.00 0.00 39.43 3.58
1827 1862 2.399396 AACGGAAACAGCGAAACATG 57.601 45.000 0.00 0.00 0.00 3.21
1835 1870 0.871722 CAGCGAAACATGAAACGGGA 59.128 50.000 0.00 0.00 0.00 5.14
1868 1903 6.836007 AGAGAGAAAAACAATCTGGAACCTTT 59.164 34.615 0.00 0.00 0.00 3.11
1921 1956 2.979678 ACATCCATCGGGCCTAGTAATT 59.020 45.455 0.84 0.00 0.00 1.40
1979 2014 5.114780 CAGACCATGGTCAGTCAGAATAAG 58.885 45.833 39.38 14.59 46.76 1.73
2009 2044 7.922811 GGAAAATGAAGCAAAGAGAGAGAAAAA 59.077 33.333 0.00 0.00 0.00 1.94
2017 2052 4.691326 AAGAGAGAGAAAAAGGAACCGT 57.309 40.909 0.00 0.00 0.00 4.83
2076 2111 3.056749 ACGGTTCTGATAGTTGTGGTCTC 60.057 47.826 0.00 0.00 0.00 3.36
2077 2112 3.056821 CGGTTCTGATAGTTGTGGTCTCA 60.057 47.826 0.00 0.00 0.00 3.27
2078 2113 4.382040 CGGTTCTGATAGTTGTGGTCTCAT 60.382 45.833 0.00 0.00 0.00 2.90
2079 2114 4.872691 GGTTCTGATAGTTGTGGTCTCATG 59.127 45.833 0.00 0.00 0.00 3.07
2080 2115 5.482908 GTTCTGATAGTTGTGGTCTCATGT 58.517 41.667 0.00 0.00 0.00 3.21
2081 2116 6.351033 GGTTCTGATAGTTGTGGTCTCATGTA 60.351 42.308 0.00 0.00 0.00 2.29
2082 2117 6.208988 TCTGATAGTTGTGGTCTCATGTAC 57.791 41.667 0.00 0.00 0.00 2.90
2083 2118 5.127194 TCTGATAGTTGTGGTCTCATGTACC 59.873 44.000 11.62 11.62 37.53 3.34
2084 2119 5.023452 TGATAGTTGTGGTCTCATGTACCT 58.977 41.667 17.19 3.77 37.91 3.08
2085 2120 6.192044 TGATAGTTGTGGTCTCATGTACCTA 58.808 40.000 17.19 7.22 37.91 3.08
2086 2121 4.803098 AGTTGTGGTCTCATGTACCTAC 57.197 45.455 17.19 14.09 37.91 3.18
2087 2122 3.514309 AGTTGTGGTCTCATGTACCTACC 59.486 47.826 17.19 8.82 37.91 3.18
2088 2123 3.468071 TGTGGTCTCATGTACCTACCT 57.532 47.619 17.19 0.00 37.91 3.08
2089 2124 4.596354 TGTGGTCTCATGTACCTACCTA 57.404 45.455 17.19 0.00 37.91 3.08
2090 2125 4.275810 TGTGGTCTCATGTACCTACCTAC 58.724 47.826 17.19 9.61 37.91 3.18
2091 2126 3.314635 GTGGTCTCATGTACCTACCTACG 59.685 52.174 17.19 0.00 37.91 3.51
2092 2127 2.883386 GGTCTCATGTACCTACCTACGG 59.117 54.545 11.34 0.00 33.97 4.02
2093 2128 3.549794 GTCTCATGTACCTACCTACGGT 58.450 50.000 0.00 0.00 40.16 4.83
2094 2129 3.950395 GTCTCATGTACCTACCTACGGTT 59.050 47.826 0.00 0.00 37.09 4.44
2095 2130 4.036144 GTCTCATGTACCTACCTACGGTTC 59.964 50.000 0.00 0.00 37.09 3.62
2096 2131 4.080129 TCTCATGTACCTACCTACGGTTCT 60.080 45.833 0.00 0.00 37.09 3.01
2097 2132 3.949754 TCATGTACCTACCTACGGTTCTG 59.050 47.826 0.00 0.00 37.09 3.02
2098 2133 3.719268 TGTACCTACCTACGGTTCTGA 57.281 47.619 0.00 0.00 37.09 3.27
2099 2134 4.240881 TGTACCTACCTACGGTTCTGAT 57.759 45.455 0.00 0.00 37.09 2.90
2100 2135 5.372343 TGTACCTACCTACGGTTCTGATA 57.628 43.478 0.00 0.00 37.09 2.15
2101 2136 5.371526 TGTACCTACCTACGGTTCTGATAG 58.628 45.833 0.00 0.00 37.09 2.08
2102 2137 4.516652 ACCTACCTACGGTTCTGATAGT 57.483 45.455 0.00 0.00 37.09 2.12
2103 2138 4.864726 ACCTACCTACGGTTCTGATAGTT 58.135 43.478 0.00 0.00 37.09 2.24
2104 2139 4.643784 ACCTACCTACGGTTCTGATAGTTG 59.356 45.833 0.00 0.00 37.09 3.16
2105 2140 4.643784 CCTACCTACGGTTCTGATAGTTGT 59.356 45.833 0.00 0.00 37.09 3.32
2106 2141 4.451629 ACCTACGGTTCTGATAGTTGTG 57.548 45.455 0.00 0.00 27.29 3.33
2107 2142 3.194968 ACCTACGGTTCTGATAGTTGTGG 59.805 47.826 0.00 0.00 27.29 4.17
2108 2143 3.194968 CCTACGGTTCTGATAGTTGTGGT 59.805 47.826 0.00 0.00 0.00 4.16
2109 2144 3.314541 ACGGTTCTGATAGTTGTGGTC 57.685 47.619 0.00 0.00 0.00 4.02
2110 2145 2.897969 ACGGTTCTGATAGTTGTGGTCT 59.102 45.455 0.00 0.00 0.00 3.85
2111 2146 3.056749 ACGGTTCTGATAGTTGTGGTCTC 60.057 47.826 0.00 0.00 0.00 3.36
2112 2147 3.512680 GGTTCTGATAGTTGTGGTCTCG 58.487 50.000 0.00 0.00 0.00 4.04
2113 2148 3.512680 GTTCTGATAGTTGTGGTCTCGG 58.487 50.000 0.00 0.00 0.00 4.63
2114 2149 2.803956 TCTGATAGTTGTGGTCTCGGT 58.196 47.619 0.00 0.00 0.00 4.69
2115 2150 3.959293 TCTGATAGTTGTGGTCTCGGTA 58.041 45.455 0.00 0.00 0.00 4.02
2116 2151 3.693085 TCTGATAGTTGTGGTCTCGGTAC 59.307 47.826 0.00 0.00 0.00 3.34
2130 2165 3.924238 GGTACGTTCGGATAGCGAA 57.076 52.632 0.00 0.00 35.53 4.70
2131 2166 2.412421 GGTACGTTCGGATAGCGAAT 57.588 50.000 0.00 0.00 35.53 3.34
2132 2167 2.314122 GGTACGTTCGGATAGCGAATC 58.686 52.381 0.00 0.00 35.53 2.52
2133 2168 2.031333 GGTACGTTCGGATAGCGAATCT 60.031 50.000 0.00 0.00 35.53 2.40
2134 2169 2.402640 ACGTTCGGATAGCGAATCTC 57.597 50.000 0.00 0.00 35.53 2.75
2135 2170 1.674441 ACGTTCGGATAGCGAATCTCA 59.326 47.619 0.00 0.00 35.53 3.27
2136 2171 2.293677 ACGTTCGGATAGCGAATCTCAT 59.706 45.455 0.00 0.00 35.53 2.90
2137 2172 3.243434 ACGTTCGGATAGCGAATCTCATT 60.243 43.478 0.00 0.00 35.53 2.57
2138 2173 3.362237 CGTTCGGATAGCGAATCTCATTC 59.638 47.826 0.00 0.00 34.75 2.67
2139 2174 3.577649 TCGGATAGCGAATCTCATTCC 57.422 47.619 0.00 0.00 35.89 3.01
2140 2175 2.231478 TCGGATAGCGAATCTCATTCCC 59.769 50.000 0.00 0.00 35.89 3.97
2141 2176 2.675317 CGGATAGCGAATCTCATTCCCC 60.675 54.545 0.00 0.00 35.89 4.81
2142 2177 2.355209 GGATAGCGAATCTCATTCCCCC 60.355 54.545 0.00 0.00 35.89 5.40
2143 2178 0.679505 TAGCGAATCTCATTCCCCCG 59.320 55.000 0.00 0.00 35.89 5.73
2144 2179 1.146263 GCGAATCTCATTCCCCCGT 59.854 57.895 0.00 0.00 35.89 5.28
2145 2180 0.880718 GCGAATCTCATTCCCCCGTC 60.881 60.000 0.00 0.00 35.89 4.79
2146 2181 0.753262 CGAATCTCATTCCCCCGTCT 59.247 55.000 0.00 0.00 35.89 4.18
2147 2182 1.269831 CGAATCTCATTCCCCCGTCTC 60.270 57.143 0.00 0.00 35.89 3.36
2148 2183 2.043227 GAATCTCATTCCCCCGTCTCT 58.957 52.381 0.00 0.00 33.17 3.10
2149 2184 1.710816 ATCTCATTCCCCCGTCTCTC 58.289 55.000 0.00 0.00 0.00 3.20
2150 2185 0.631753 TCTCATTCCCCCGTCTCTCT 59.368 55.000 0.00 0.00 0.00 3.10
2151 2186 1.036707 CTCATTCCCCCGTCTCTCTC 58.963 60.000 0.00 0.00 0.00 3.20
2152 2187 0.631753 TCATTCCCCCGTCTCTCTCT 59.368 55.000 0.00 0.00 0.00 3.10
2153 2188 1.036707 CATTCCCCCGTCTCTCTCTC 58.963 60.000 0.00 0.00 0.00 3.20
2154 2189 0.930726 ATTCCCCCGTCTCTCTCTCT 59.069 55.000 0.00 0.00 0.00 3.10
2155 2190 0.256464 TTCCCCCGTCTCTCTCTCTC 59.744 60.000 0.00 0.00 0.00 3.20
2156 2191 0.622154 TCCCCCGTCTCTCTCTCTCT 60.622 60.000 0.00 0.00 0.00 3.10
2157 2192 0.179029 CCCCCGTCTCTCTCTCTCTC 60.179 65.000 0.00 0.00 0.00 3.20
2158 2193 0.837272 CCCCGTCTCTCTCTCTCTCT 59.163 60.000 0.00 0.00 0.00 3.10
2159 2194 1.202651 CCCCGTCTCTCTCTCTCTCTC 60.203 61.905 0.00 0.00 0.00 3.20
2160 2195 1.762957 CCCGTCTCTCTCTCTCTCTCT 59.237 57.143 0.00 0.00 0.00 3.10
2161 2196 2.224066 CCCGTCTCTCTCTCTCTCTCTC 60.224 59.091 0.00 0.00 0.00 3.20
2162 2197 2.695666 CCGTCTCTCTCTCTCTCTCTCT 59.304 54.545 0.00 0.00 0.00 3.10
2163 2198 3.243569 CCGTCTCTCTCTCTCTCTCTCTC 60.244 56.522 0.00 0.00 0.00 3.20
2164 2199 3.634448 CGTCTCTCTCTCTCTCTCTCTCT 59.366 52.174 0.00 0.00 0.00 3.10
2165 2200 4.822350 CGTCTCTCTCTCTCTCTCTCTCTA 59.178 50.000 0.00 0.00 0.00 2.43
2166 2201 5.475220 CGTCTCTCTCTCTCTCTCTCTCTAT 59.525 48.000 0.00 0.00 0.00 1.98
2167 2202 6.655425 CGTCTCTCTCTCTCTCTCTCTCTATA 59.345 46.154 0.00 0.00 0.00 1.31
2168 2203 7.338196 CGTCTCTCTCTCTCTCTCTCTCTATAT 59.662 44.444 0.00 0.00 0.00 0.86
2169 2204 9.688091 GTCTCTCTCTCTCTCTCTCTCTATATA 57.312 40.741 0.00 0.00 0.00 0.86
2201 2236 7.865706 ATATATATGGCTTTTCCCACGAATC 57.134 36.000 0.00 0.00 37.79 2.52
2202 2237 2.214376 ATGGCTTTTCCCACGAATCA 57.786 45.000 0.00 0.00 37.79 2.57
2203 2238 2.214376 TGGCTTTTCCCACGAATCAT 57.786 45.000 0.00 0.00 0.00 2.45
2204 2239 2.524306 TGGCTTTTCCCACGAATCATT 58.476 42.857 0.00 0.00 0.00 2.57
2205 2240 2.491693 TGGCTTTTCCCACGAATCATTC 59.508 45.455 0.00 0.00 0.00 2.67
2206 2241 2.755103 GGCTTTTCCCACGAATCATTCT 59.245 45.455 0.00 0.00 0.00 2.40
2207 2242 3.193479 GGCTTTTCCCACGAATCATTCTT 59.807 43.478 0.00 0.00 0.00 2.52
2208 2243 4.168760 GCTTTTCCCACGAATCATTCTTG 58.831 43.478 0.00 0.00 0.00 3.02
2209 2244 4.321230 GCTTTTCCCACGAATCATTCTTGT 60.321 41.667 3.38 0.00 0.00 3.16
2210 2245 5.772521 CTTTTCCCACGAATCATTCTTGTT 58.227 37.500 3.38 0.00 0.00 2.83
2211 2246 6.569610 GCTTTTCCCACGAATCATTCTTGTTA 60.570 38.462 3.38 0.00 0.00 2.41
2212 2247 6.494893 TTTCCCACGAATCATTCTTGTTAG 57.505 37.500 3.38 0.00 0.00 2.34
2213 2248 5.160607 TCCCACGAATCATTCTTGTTAGT 57.839 39.130 3.38 0.00 0.00 2.24
2214 2249 5.175859 TCCCACGAATCATTCTTGTTAGTC 58.824 41.667 3.38 0.00 0.00 2.59
2215 2250 4.935205 CCCACGAATCATTCTTGTTAGTCA 59.065 41.667 3.38 0.00 0.00 3.41
2216 2251 5.586243 CCCACGAATCATTCTTGTTAGTCAT 59.414 40.000 3.38 0.00 0.00 3.06
2217 2252 6.457392 CCCACGAATCATTCTTGTTAGTCATG 60.457 42.308 3.38 0.00 0.00 3.07
2218 2253 6.092670 CCACGAATCATTCTTGTTAGTCATGT 59.907 38.462 3.38 0.00 0.00 3.21
2219 2254 7.361201 CCACGAATCATTCTTGTTAGTCATGTT 60.361 37.037 3.38 0.00 0.00 2.71
2220 2255 8.017373 CACGAATCATTCTTGTTAGTCATGTTT 58.983 33.333 0.00 0.00 0.00 2.83
2221 2256 8.567948 ACGAATCATTCTTGTTAGTCATGTTTT 58.432 29.630 0.00 0.00 0.00 2.43
2289 2324 7.881775 ACCCATTTTAAATAAGAATCTCGCT 57.118 32.000 0.00 0.00 0.00 4.93
2290 2325 7.931275 ACCCATTTTAAATAAGAATCTCGCTC 58.069 34.615 0.00 0.00 0.00 5.03
2291 2326 7.072030 CCCATTTTAAATAAGAATCTCGCTCG 58.928 38.462 0.00 0.00 0.00 5.03
2292 2327 7.254795 CCCATTTTAAATAAGAATCTCGCTCGT 60.255 37.037 0.00 0.00 0.00 4.18
2293 2328 8.122952 CCATTTTAAATAAGAATCTCGCTCGTT 58.877 33.333 0.00 0.00 0.00 3.85
2294 2329 8.937932 CATTTTAAATAAGAATCTCGCTCGTTG 58.062 33.333 0.00 0.00 0.00 4.10
2295 2330 6.583912 TTAAATAAGAATCTCGCTCGTTGG 57.416 37.500 0.00 0.00 0.00 3.77
2296 2331 1.922570 TAAGAATCTCGCTCGTTGGC 58.077 50.000 0.00 0.00 0.00 4.52
2304 2339 4.458164 GCTCGTTGGCGGATTTTG 57.542 55.556 0.00 0.00 38.89 2.44
2305 2340 1.801512 GCTCGTTGGCGGATTTTGC 60.802 57.895 0.00 0.00 38.89 3.68
2306 2341 1.875963 CTCGTTGGCGGATTTTGCT 59.124 52.632 0.00 0.00 38.89 3.91
2307 2342 0.179189 CTCGTTGGCGGATTTTGCTC 60.179 55.000 0.00 0.00 38.89 4.26
2308 2343 0.605319 TCGTTGGCGGATTTTGCTCT 60.605 50.000 0.00 0.00 38.89 4.09
2309 2344 0.179189 CGTTGGCGGATTTTGCTCTC 60.179 55.000 0.00 0.00 0.00 3.20
2310 2345 0.179189 GTTGGCGGATTTTGCTCTCG 60.179 55.000 0.00 0.00 0.00 4.04
2311 2346 1.305219 TTGGCGGATTTTGCTCTCGG 61.305 55.000 0.00 0.00 0.00 4.63
2312 2347 2.472909 GGCGGATTTTGCTCTCGGG 61.473 63.158 0.00 0.00 0.00 5.14
2313 2348 1.745489 GCGGATTTTGCTCTCGGGT 60.745 57.895 0.00 0.00 0.00 5.28
2314 2349 1.305930 GCGGATTTTGCTCTCGGGTT 61.306 55.000 0.00 0.00 0.00 4.11
2315 2350 0.447801 CGGATTTTGCTCTCGGGTTG 59.552 55.000 0.00 0.00 0.00 3.77
2316 2351 1.534729 GGATTTTGCTCTCGGGTTGT 58.465 50.000 0.00 0.00 0.00 3.32
2317 2352 1.200020 GGATTTTGCTCTCGGGTTGTG 59.800 52.381 0.00 0.00 0.00 3.33
2318 2353 2.151202 GATTTTGCTCTCGGGTTGTGA 58.849 47.619 0.00 0.00 0.00 3.58
2319 2354 2.270352 TTTTGCTCTCGGGTTGTGAT 57.730 45.000 0.00 0.00 0.00 3.06
2320 2355 1.522668 TTTGCTCTCGGGTTGTGATG 58.477 50.000 0.00 0.00 0.00 3.07
2321 2356 0.684535 TTGCTCTCGGGTTGTGATGA 59.315 50.000 0.00 0.00 0.00 2.92
2322 2357 0.684535 TGCTCTCGGGTTGTGATGAA 59.315 50.000 0.00 0.00 0.00 2.57
2323 2358 1.071542 TGCTCTCGGGTTGTGATGAAA 59.928 47.619 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.736144 TTTGAATGGCTACGACGAGT 57.264 45.000 0.00 0.00 0.00 4.18
1 2 3.448686 AGATTTGAATGGCTACGACGAG 58.551 45.455 0.00 0.00 0.00 4.18
2 3 3.520290 AGATTTGAATGGCTACGACGA 57.480 42.857 0.00 0.00 0.00 4.20
3 4 5.107453 GGAATAGATTTGAATGGCTACGACG 60.107 44.000 0.00 0.00 0.00 5.12
4 5 5.179555 GGGAATAGATTTGAATGGCTACGAC 59.820 44.000 0.00 0.00 0.00 4.34
5 6 5.071788 AGGGAATAGATTTGAATGGCTACGA 59.928 40.000 0.00 0.00 0.00 3.43
6 7 5.308825 AGGGAATAGATTTGAATGGCTACG 58.691 41.667 0.00 0.00 0.00 3.51
7 8 6.429385 CAGAGGGAATAGATTTGAATGGCTAC 59.571 42.308 0.00 0.00 0.00 3.58
8 9 6.329986 TCAGAGGGAATAGATTTGAATGGCTA 59.670 38.462 0.00 0.00 0.00 3.93
9 10 5.133322 TCAGAGGGAATAGATTTGAATGGCT 59.867 40.000 0.00 0.00 0.00 4.75
10 11 5.240403 GTCAGAGGGAATAGATTTGAATGGC 59.760 44.000 0.00 0.00 0.00 4.40
11 12 5.767168 GGTCAGAGGGAATAGATTTGAATGG 59.233 44.000 0.00 0.00 0.00 3.16
12 13 5.767168 GGGTCAGAGGGAATAGATTTGAATG 59.233 44.000 0.00 0.00 0.00 2.67
13 14 5.674035 AGGGTCAGAGGGAATAGATTTGAAT 59.326 40.000 0.00 0.00 0.00 2.57
14 15 5.039645 AGGGTCAGAGGGAATAGATTTGAA 58.960 41.667 0.00 0.00 0.00 2.69
19 20 5.426325 AAGTAGGGTCAGAGGGAATAGAT 57.574 43.478 0.00 0.00 0.00 1.98
23 24 5.157770 TGATAAGTAGGGTCAGAGGGAAT 57.842 43.478 0.00 0.00 0.00 3.01
31 32 5.880332 GTGCAGAAAATGATAAGTAGGGTCA 59.120 40.000 0.00 0.00 0.00 4.02
46 47 9.725019 TCTAGAATAGATTTGAAGTGCAGAAAA 57.275 29.630 0.00 0.00 44.15 2.29
123 126 1.630148 CTGCTAACGGGTCTTTCTCG 58.370 55.000 0.00 0.00 46.72 4.04
145 148 6.513393 CGTCTTTGTTTAAATCTTGGCTCTGT 60.513 38.462 0.00 0.00 0.00 3.41
284 287 7.545965 AGAGTCATAGTCCGTACTTTCATTTTG 59.454 37.037 0.00 0.00 37.15 2.44
290 293 8.858186 GTTTTTAGAGTCATAGTCCGTACTTTC 58.142 37.037 0.00 0.00 37.15 2.62
299 302 9.220767 ACCTTTCATGTTTTTAGAGTCATAGTC 57.779 33.333 0.00 0.00 0.00 2.59
353 356 7.815068 ACATTAAGAAGATATGATAGACACGCC 59.185 37.037 0.00 0.00 0.00 5.68
393 396 8.843885 AGAAGGGTATGTGTAAAAGTCTAAAC 57.156 34.615 0.00 0.00 0.00 2.01
406 409 3.287867 AGGCAATGAGAAGGGTATGTG 57.712 47.619 0.00 0.00 0.00 3.21
453 456 3.286694 AAGGCCGCATGACCCACAT 62.287 57.895 0.00 0.00 40.17 3.21
454 457 3.965258 AAGGCCGCATGACCCACA 61.965 61.111 0.00 0.00 0.00 4.17
455 458 3.443045 CAAGGCCGCATGACCCAC 61.443 66.667 0.00 0.00 0.00 4.61
460 463 2.282391 AACTGCAAGGCCGCATGA 60.282 55.556 5.73 0.00 42.06 3.07
462 465 3.376078 CCAACTGCAAGGCCGCAT 61.376 61.111 5.73 0.00 42.06 4.73
541 544 9.226606 ACGTATAAAACAATGAAGAAATCCAGA 57.773 29.630 0.00 0.00 0.00 3.86
605 608 1.686587 TCTCACCAAGTCTCGAAGCAA 59.313 47.619 0.00 0.00 0.00 3.91
614 617 1.808945 CCATGTGCTTCTCACCAAGTC 59.191 52.381 0.00 0.00 45.03 3.01
618 621 0.478072 AACCCATGTGCTTCTCACCA 59.522 50.000 0.00 0.00 45.03 4.17
662 665 6.683537 TCCTCCTATGAAGGTGAAATCTCTA 58.316 40.000 0.00 0.00 44.09 2.43
715 718 0.252375 ATGCCCCTCTGCCAAACATT 60.252 50.000 0.00 0.00 0.00 2.71
767 770 7.272037 TGCGTCTCTATGTGATCTACAATTA 57.728 36.000 0.00 0.00 43.77 1.40
776 779 1.270518 GGCCATGCGTCTCTATGTGAT 60.271 52.381 0.00 0.00 0.00 3.06
837 840 0.446616 GAATTTTCGTCGGTGGAGGC 59.553 55.000 0.00 0.00 0.00 4.70
900 903 2.691011 GGGAGAGTTGAGGCAGTAGTAG 59.309 54.545 0.00 0.00 0.00 2.57
947 950 0.908198 AGGAGAGTTGACATGGAGCC 59.092 55.000 0.00 0.00 0.00 4.70
996 1000 2.033424 GGCGGTGCTAAAATCCATCTTC 59.967 50.000 0.00 0.00 0.00 2.87
997 1001 2.024414 GGCGGTGCTAAAATCCATCTT 58.976 47.619 0.00 0.00 0.00 2.40
999 1003 1.065551 GTGGCGGTGCTAAAATCCATC 59.934 52.381 0.00 0.00 0.00 3.51
1008 1012 4.697756 GTGCTGGTGGCGGTGCTA 62.698 66.667 0.00 0.00 45.43 3.49
1024 1028 1.661341 GGAATTGAGCTCGATGCAGT 58.339 50.000 21.66 4.99 45.94 4.40
1028 1032 0.882042 CGGGGGAATTGAGCTCGATG 60.882 60.000 17.44 0.00 0.00 3.84
1032 1036 1.524849 GAGCGGGGGAATTGAGCTC 60.525 63.158 6.82 6.82 45.74 4.09
1038 1042 2.042930 AGAGGGAGCGGGGGAATT 59.957 61.111 0.00 0.00 0.00 2.17
1042 1046 4.150454 AGAGAGAGGGAGCGGGGG 62.150 72.222 0.00 0.00 0.00 5.40
1044 1048 1.528309 GAGAGAGAGAGGGAGCGGG 60.528 68.421 0.00 0.00 0.00 6.13
1047 1051 0.258774 ACTGGAGAGAGAGAGGGAGC 59.741 60.000 0.00 0.00 0.00 4.70
1048 1052 1.133792 GGACTGGAGAGAGAGAGGGAG 60.134 61.905 0.00 0.00 0.00 4.30
1051 1055 1.684869 GGTGGACTGGAGAGAGAGAGG 60.685 61.905 0.00 0.00 0.00 3.69
1055 1059 0.251832 GGTGGTGGACTGGAGAGAGA 60.252 60.000 0.00 0.00 0.00 3.10
1056 1060 1.599606 CGGTGGTGGACTGGAGAGAG 61.600 65.000 0.00 0.00 0.00 3.20
1057 1061 1.606601 CGGTGGTGGACTGGAGAGA 60.607 63.158 0.00 0.00 0.00 3.10
1059 1063 1.906824 GACGGTGGTGGACTGGAGA 60.907 63.158 0.00 0.00 34.90 3.71
1060 1064 2.657237 GACGGTGGTGGACTGGAG 59.343 66.667 0.00 0.00 34.90 3.86
1061 1065 2.920912 GGACGGTGGTGGACTGGA 60.921 66.667 0.00 0.00 34.90 3.86
1143 1172 2.680974 TTTGCCTCTGCTCCGCTTGT 62.681 55.000 0.00 0.00 38.71 3.16
1146 1175 1.968540 GTTTTGCCTCTGCTCCGCT 60.969 57.895 0.00 0.00 38.71 5.52
1192 1222 4.015406 TGGTGGTCGCCATCGCTT 62.015 61.111 0.00 0.00 37.47 4.68
1226 1256 0.529378 GTGGCCAAATCCAGCAGAAG 59.471 55.000 7.24 0.00 36.67 2.85
1371 1402 0.957362 TCACATCCGCAACATGCAAA 59.043 45.000 2.99 0.00 45.36 3.68
1382 1413 0.036010 AAACCAGCCTCTCACATCCG 60.036 55.000 0.00 0.00 0.00 4.18
1421 1452 5.726980 AATTAGCACAGAAAAGATTGGCA 57.273 34.783 0.00 0.00 0.00 4.92
1643 1676 1.334054 ATTTTCGTCGACGGTTCTCG 58.666 50.000 35.05 10.61 45.88 4.04
1671 1704 7.173390 GTCTATTCAATATACAGCCCAAGGAAC 59.827 40.741 0.00 0.00 0.00 3.62
1714 1747 3.250040 CCAACACTACGGTCCAGAAAAAG 59.750 47.826 0.00 0.00 0.00 2.27
1747 1782 5.361571 TGTTATTCCCGTGTCTGCTCTATAA 59.638 40.000 0.00 0.00 0.00 0.98
1751 1786 1.899814 TGTTATTCCCGTGTCTGCTCT 59.100 47.619 0.00 0.00 0.00 4.09
1761 1796 2.491693 ACACCAAGCAATGTTATTCCCG 59.508 45.455 0.00 0.00 0.00 5.14
1785 1820 1.531149 ACCGCTTTGAAAGTGTGATCG 59.469 47.619 16.31 5.71 37.31 3.69
1788 1823 4.664188 GTTTTACCGCTTTGAAAGTGTGA 58.336 39.130 16.31 4.35 37.31 3.58
1792 1827 2.944349 TCCGTTTTACCGCTTTGAAAGT 59.056 40.909 6.81 0.00 0.00 2.66
1827 1862 2.032620 TCTCTGGCTAGATCCCGTTTC 58.967 52.381 0.00 0.00 31.21 2.78
1835 1870 6.822676 CAGATTGTTTTTCTCTCTGGCTAGAT 59.177 38.462 0.00 0.00 31.76 1.98
1868 1903 2.486592 CTGTCACATGCAAGCTCATCAA 59.513 45.455 0.00 0.00 0.00 2.57
1904 1939 1.882352 GCCAATTACTAGGCCCGATGG 60.882 57.143 0.00 0.00 45.18 3.51
1921 1956 1.064017 AGTTCTGAACCAAACCTGCCA 60.064 47.619 16.48 0.00 0.00 4.92
1926 1961 4.885325 TCAGGTAAAGTTCTGAACCAAACC 59.115 41.667 16.48 18.56 37.11 3.27
1979 2014 4.082125 TCTCTTTGCTTCATTTTCCTCCC 58.918 43.478 0.00 0.00 0.00 4.30
2009 2044 0.848053 TTTCCTTCCCAACGGTTCCT 59.152 50.000 0.00 0.00 0.00 3.36
2017 2052 1.142060 TCCGAACCTTTCCTTCCCAA 58.858 50.000 0.00 0.00 0.00 4.12
2087 2122 4.158025 AGACCACAACTATCAGAACCGTAG 59.842 45.833 0.00 0.00 0.00 3.51
2088 2123 4.084287 AGACCACAACTATCAGAACCGTA 58.916 43.478 0.00 0.00 0.00 4.02
2089 2124 2.897969 AGACCACAACTATCAGAACCGT 59.102 45.455 0.00 0.00 0.00 4.83
2090 2125 3.512680 GAGACCACAACTATCAGAACCG 58.487 50.000 0.00 0.00 0.00 4.44
2091 2126 3.512680 CGAGACCACAACTATCAGAACC 58.487 50.000 0.00 0.00 0.00 3.62
2092 2127 3.056749 ACCGAGACCACAACTATCAGAAC 60.057 47.826 0.00 0.00 0.00 3.01
2093 2128 3.162666 ACCGAGACCACAACTATCAGAA 58.837 45.455 0.00 0.00 0.00 3.02
2094 2129 2.803956 ACCGAGACCACAACTATCAGA 58.196 47.619 0.00 0.00 0.00 3.27
2095 2130 3.487042 CGTACCGAGACCACAACTATCAG 60.487 52.174 0.00 0.00 0.00 2.90
2096 2131 2.421073 CGTACCGAGACCACAACTATCA 59.579 50.000 0.00 0.00 0.00 2.15
2097 2132 2.421424 ACGTACCGAGACCACAACTATC 59.579 50.000 0.00 0.00 0.00 2.08
2098 2133 2.440409 ACGTACCGAGACCACAACTAT 58.560 47.619 0.00 0.00 0.00 2.12
2099 2134 1.896220 ACGTACCGAGACCACAACTA 58.104 50.000 0.00 0.00 0.00 2.24
2100 2135 1.000938 GAACGTACCGAGACCACAACT 60.001 52.381 0.00 0.00 0.00 3.16
2101 2136 1.412387 GAACGTACCGAGACCACAAC 58.588 55.000 0.00 0.00 0.00 3.32
2102 2137 0.040157 CGAACGTACCGAGACCACAA 60.040 55.000 4.50 0.00 0.00 3.33
2103 2138 1.575922 CGAACGTACCGAGACCACA 59.424 57.895 4.50 0.00 0.00 4.17
2104 2139 1.154150 CCGAACGTACCGAGACCAC 60.154 63.158 11.21 0.00 0.00 4.16
2105 2140 0.677731 ATCCGAACGTACCGAGACCA 60.678 55.000 11.21 0.00 0.00 4.02
2106 2141 1.262683 CTATCCGAACGTACCGAGACC 59.737 57.143 11.21 0.00 0.00 3.85
2107 2142 1.333613 GCTATCCGAACGTACCGAGAC 60.334 57.143 11.21 0.00 0.00 3.36
2108 2143 0.940126 GCTATCCGAACGTACCGAGA 59.060 55.000 11.21 7.58 0.00 4.04
2109 2144 0.383983 CGCTATCCGAACGTACCGAG 60.384 60.000 11.21 3.26 40.02 4.63
2110 2145 0.809636 TCGCTATCCGAACGTACCGA 60.810 55.000 11.21 0.00 44.21 4.69
2111 2146 1.643292 TCGCTATCCGAACGTACCG 59.357 57.895 0.00 0.00 44.21 4.02
2119 2154 2.231478 GGGAATGAGATTCGCTATCCGA 59.769 50.000 6.21 0.00 45.52 4.55
2120 2155 2.611518 GGGAATGAGATTCGCTATCCG 58.388 52.381 6.21 0.00 45.52 4.18
2127 2162 0.753262 AGACGGGGGAATGAGATTCG 59.247 55.000 0.00 0.00 40.17 3.34
2128 2163 2.036604 GAGAGACGGGGGAATGAGATTC 59.963 54.545 0.00 0.00 38.55 2.52
2129 2164 2.043227 GAGAGACGGGGGAATGAGATT 58.957 52.381 0.00 0.00 0.00 2.40
2130 2165 1.219213 AGAGAGACGGGGGAATGAGAT 59.781 52.381 0.00 0.00 0.00 2.75
2131 2166 0.631753 AGAGAGACGGGGGAATGAGA 59.368 55.000 0.00 0.00 0.00 3.27
2132 2167 1.036707 GAGAGAGACGGGGGAATGAG 58.963 60.000 0.00 0.00 0.00 2.90
2133 2168 0.631753 AGAGAGAGACGGGGGAATGA 59.368 55.000 0.00 0.00 0.00 2.57
2134 2169 1.036707 GAGAGAGAGACGGGGGAATG 58.963 60.000 0.00 0.00 0.00 2.67
2135 2170 0.930726 AGAGAGAGAGACGGGGGAAT 59.069 55.000 0.00 0.00 0.00 3.01
2136 2171 0.256464 GAGAGAGAGAGACGGGGGAA 59.744 60.000 0.00 0.00 0.00 3.97
2137 2172 0.622154 AGAGAGAGAGAGACGGGGGA 60.622 60.000 0.00 0.00 0.00 4.81
2138 2173 0.179029 GAGAGAGAGAGAGACGGGGG 60.179 65.000 0.00 0.00 0.00 5.40
2139 2174 0.837272 AGAGAGAGAGAGAGACGGGG 59.163 60.000 0.00 0.00 0.00 5.73
2140 2175 1.762957 AGAGAGAGAGAGAGAGACGGG 59.237 57.143 0.00 0.00 0.00 5.28
2141 2176 2.695666 AGAGAGAGAGAGAGAGAGACGG 59.304 54.545 0.00 0.00 0.00 4.79
2142 2177 3.634448 AGAGAGAGAGAGAGAGAGAGACG 59.366 52.174 0.00 0.00 0.00 4.18
2143 2178 6.909550 ATAGAGAGAGAGAGAGAGAGAGAC 57.090 45.833 0.00 0.00 0.00 3.36
2175 2210 9.561069 GATTCGTGGGAAAAGCCATATATATAT 57.439 33.333 0.00 0.00 38.95 0.86
2176 2211 8.544622 TGATTCGTGGGAAAAGCCATATATATA 58.455 33.333 0.00 0.00 38.95 0.86
2177 2212 7.402054 TGATTCGTGGGAAAAGCCATATATAT 58.598 34.615 0.00 0.00 38.95 0.86
2178 2213 6.774673 TGATTCGTGGGAAAAGCCATATATA 58.225 36.000 0.00 0.00 38.95 0.86
2179 2214 5.630121 TGATTCGTGGGAAAAGCCATATAT 58.370 37.500 0.00 0.00 38.95 0.86
2180 2215 5.042463 TGATTCGTGGGAAAAGCCATATA 57.958 39.130 0.00 0.00 38.95 0.86
2181 2216 3.897239 TGATTCGTGGGAAAAGCCATAT 58.103 40.909 0.00 0.00 38.95 1.78
2182 2217 3.358111 TGATTCGTGGGAAAAGCCATA 57.642 42.857 0.00 0.00 38.95 2.74
2183 2218 2.214376 TGATTCGTGGGAAAAGCCAT 57.786 45.000 0.00 0.00 38.95 4.40
2184 2219 2.214376 ATGATTCGTGGGAAAAGCCA 57.786 45.000 0.00 0.00 38.95 4.75
2185 2220 2.755103 AGAATGATTCGTGGGAAAAGCC 59.245 45.455 0.00 0.00 35.40 4.35
2186 2221 4.168760 CAAGAATGATTCGTGGGAAAAGC 58.831 43.478 12.37 0.00 35.84 3.51
2187 2222 5.376854 ACAAGAATGATTCGTGGGAAAAG 57.623 39.130 21.68 0.00 42.36 2.27
2188 2223 5.782893 AACAAGAATGATTCGTGGGAAAA 57.217 34.783 21.68 0.00 42.36 2.29
2189 2224 6.001460 ACTAACAAGAATGATTCGTGGGAAA 58.999 36.000 21.68 6.46 42.36 3.13
2190 2225 5.556915 ACTAACAAGAATGATTCGTGGGAA 58.443 37.500 21.68 8.47 42.36 3.97
2191 2226 5.160607 ACTAACAAGAATGATTCGTGGGA 57.839 39.130 21.68 10.36 42.36 4.37
2192 2227 4.935205 TGACTAACAAGAATGATTCGTGGG 59.065 41.667 21.68 14.40 42.36 4.61
2193 2228 6.092670 ACATGACTAACAAGAATGATTCGTGG 59.907 38.462 21.68 9.38 42.36 4.94
2194 2229 7.065216 ACATGACTAACAAGAATGATTCGTG 57.935 36.000 17.44 17.44 43.44 4.35
2195 2230 7.672983 AACATGACTAACAAGAATGATTCGT 57.327 32.000 0.00 0.00 34.02 3.85
2196 2231 8.955061 AAAACATGACTAACAAGAATGATTCG 57.045 30.769 0.00 0.00 34.02 3.34
2263 2298 9.574516 AGCGAGATTCTTATTTAAAATGGGTAT 57.425 29.630 0.00 0.00 0.00 2.73
2264 2299 8.974060 AGCGAGATTCTTATTTAAAATGGGTA 57.026 30.769 0.00 0.00 0.00 3.69
2265 2300 7.254795 CGAGCGAGATTCTTATTTAAAATGGGT 60.255 37.037 0.00 0.00 0.00 4.51
2266 2301 7.072030 CGAGCGAGATTCTTATTTAAAATGGG 58.928 38.462 0.00 0.00 0.00 4.00
2267 2302 7.630924 ACGAGCGAGATTCTTATTTAAAATGG 58.369 34.615 0.00 0.00 0.00 3.16
2268 2303 8.937932 CAACGAGCGAGATTCTTATTTAAAATG 58.062 33.333 0.00 0.00 0.00 2.32
2269 2304 8.122952 CCAACGAGCGAGATTCTTATTTAAAAT 58.877 33.333 0.00 0.00 0.00 1.82
2270 2305 7.461107 CCAACGAGCGAGATTCTTATTTAAAA 58.539 34.615 0.00 0.00 0.00 1.52
2271 2306 6.456449 GCCAACGAGCGAGATTCTTATTTAAA 60.456 38.462 0.00 0.00 0.00 1.52
2272 2307 5.006358 GCCAACGAGCGAGATTCTTATTTAA 59.994 40.000 0.00 0.00 0.00 1.52
2273 2308 4.506654 GCCAACGAGCGAGATTCTTATTTA 59.493 41.667 0.00 0.00 0.00 1.40
2274 2309 3.309954 GCCAACGAGCGAGATTCTTATTT 59.690 43.478 0.00 0.00 0.00 1.40
2275 2310 2.866762 GCCAACGAGCGAGATTCTTATT 59.133 45.455 0.00 0.00 0.00 1.40
2276 2311 2.474816 GCCAACGAGCGAGATTCTTAT 58.525 47.619 0.00 0.00 0.00 1.73
2277 2312 1.922570 GCCAACGAGCGAGATTCTTA 58.077 50.000 0.00 0.00 0.00 2.10
2278 2313 2.755929 GCCAACGAGCGAGATTCTT 58.244 52.632 0.00 0.00 0.00 2.52
2279 2314 4.504132 GCCAACGAGCGAGATTCT 57.496 55.556 0.00 0.00 0.00 2.40
2287 2322 1.801512 GCAAAATCCGCCAACGAGC 60.802 57.895 0.00 0.00 43.93 5.03
2288 2323 0.179189 GAGCAAAATCCGCCAACGAG 60.179 55.000 0.00 0.00 43.93 4.18
2289 2324 0.605319 AGAGCAAAATCCGCCAACGA 60.605 50.000 0.00 0.00 43.93 3.85
2290 2325 0.179189 GAGAGCAAAATCCGCCAACG 60.179 55.000 0.00 0.00 39.67 4.10
2291 2326 0.179189 CGAGAGCAAAATCCGCCAAC 60.179 55.000 0.00 0.00 0.00 3.77
2292 2327 1.305219 CCGAGAGCAAAATCCGCCAA 61.305 55.000 0.00 0.00 0.00 4.52
2293 2328 1.745115 CCGAGAGCAAAATCCGCCA 60.745 57.895 0.00 0.00 0.00 5.69
2294 2329 2.472909 CCCGAGAGCAAAATCCGCC 61.473 63.158 0.00 0.00 0.00 6.13
2295 2330 1.305930 AACCCGAGAGCAAAATCCGC 61.306 55.000 0.00 0.00 0.00 5.54
2296 2331 0.447801 CAACCCGAGAGCAAAATCCG 59.552 55.000 0.00 0.00 0.00 4.18
2297 2332 1.200020 CACAACCCGAGAGCAAAATCC 59.800 52.381 0.00 0.00 0.00 3.01
2298 2333 2.151202 TCACAACCCGAGAGCAAAATC 58.849 47.619 0.00 0.00 0.00 2.17
2299 2334 2.270352 TCACAACCCGAGAGCAAAAT 57.730 45.000 0.00 0.00 0.00 1.82
2300 2335 1.879380 CATCACAACCCGAGAGCAAAA 59.121 47.619 0.00 0.00 0.00 2.44
2301 2336 1.071542 TCATCACAACCCGAGAGCAAA 59.928 47.619 0.00 0.00 0.00 3.68
2302 2337 0.684535 TCATCACAACCCGAGAGCAA 59.315 50.000 0.00 0.00 0.00 3.91
2303 2338 0.684535 TTCATCACAACCCGAGAGCA 59.315 50.000 0.00 0.00 0.00 4.26
2304 2339 1.808411 TTTCATCACAACCCGAGAGC 58.192 50.000 0.00 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.