Multiple sequence alignment - TraesCS6A01G206300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G206300 chr6A 100.000 6682 0 0 1 6682 363522569 363515888 0.000000e+00 12340.0
1 TraesCS6A01G206300 chr6A 92.810 306 22 0 2936 3241 363519394 363519089 1.710000e-120 444.0
2 TraesCS6A01G206300 chr6A 92.810 306 22 0 3176 3481 363519634 363519329 1.710000e-120 444.0
3 TraesCS6A01G206300 chr5A 90.221 2352 112 47 227 2515 664794792 664797088 0.000000e+00 2961.0
4 TraesCS6A01G206300 chr5A 96.979 1026 28 3 4273 5298 664798946 664799968 0.000000e+00 1720.0
5 TraesCS6A01G206300 chr5A 94.836 794 32 3 3481 4272 664798119 664798905 0.000000e+00 1230.0
6 TraesCS6A01G206300 chr5A 92.572 727 34 6 5299 6024 664800207 664800914 0.000000e+00 1026.0
7 TraesCS6A01G206300 chr5A 92.385 696 44 8 2689 3377 664797099 664797792 0.000000e+00 983.0
8 TraesCS6A01G206300 chr5A 93.137 306 21 0 3176 3481 664797345 664797650 3.680000e-122 449.0
9 TraesCS6A01G206300 chr5A 95.305 213 7 3 2508 2719 355158504 355158714 1.070000e-87 335.0
10 TraesCS6A01G206300 chr5A 86.364 308 28 7 1458 1765 697735710 697735417 2.320000e-84 324.0
11 TraesCS6A01G206300 chr5A 81.564 179 28 4 3578 3752 664797407 664797584 6.980000e-30 143.0
12 TraesCS6A01G206300 chr4D 90.718 2047 84 38 439 2442 484389839 484391822 0.000000e+00 2630.0
13 TraesCS6A01G206300 chr4D 94.676 864 38 6 5299 6162 484394680 484395535 0.000000e+00 1334.0
14 TraesCS6A01G206300 chr4D 96.465 792 27 1 3481 4272 484392635 484393425 0.000000e+00 1306.0
15 TraesCS6A01G206300 chr4D 95.946 518 13 5 4273 4782 484393470 484393987 0.000000e+00 833.0
16 TraesCS6A01G206300 chr4D 97.624 463 10 1 4836 5298 484393987 484394448 0.000000e+00 793.0
17 TraesCS6A01G206300 chr4D 90.244 492 40 8 2893 3377 484391820 484392310 2.630000e-178 636.0
18 TraesCS6A01G206300 chr4D 92.484 306 23 0 3176 3481 484391863 484392168 7.960000e-119 438.0
19 TraesCS6A01G206300 chr4D 90.909 253 9 6 222 466 484389590 484389836 1.800000e-85 327.0
20 TraesCS6A01G206300 chr4D 95.500 200 7 2 6344 6541 484395615 484395814 1.080000e-82 318.0
21 TraesCS6A01G206300 chr4D 92.025 163 13 0 6175 6337 34661527 34661689 5.210000e-56 230.0
22 TraesCS6A01G206300 chr4D 94.521 146 7 1 6537 6682 484396259 484396403 2.420000e-54 224.0
23 TraesCS6A01G206300 chr4D 92.941 85 6 0 6029 6113 173858566 173858650 2.530000e-24 124.0
24 TraesCS6A01G206300 chr6B 92.830 1046 49 7 993 2021 404364287 404363251 0.000000e+00 1493.0
25 TraesCS6A01G206300 chr6B 91.071 168 13 2 6171 6336 583446150 583445983 6.740000e-55 226.0
26 TraesCS6A01G206300 chr2B 95.794 214 4 5 2505 2715 481540489 481540278 2.310000e-89 340.0
27 TraesCS6A01G206300 chr2B 98.936 188 2 0 2505 2692 445679959 445679772 2.990000e-88 337.0
28 TraesCS6A01G206300 chr2B 98.429 191 2 1 2507 2697 48048529 48048718 1.070000e-87 335.0
29 TraesCS6A01G206300 chr2B 97.396 192 3 2 2501 2692 779108664 779108853 6.460000e-85 326.0
30 TraesCS6A01G206300 chr2B 82.831 332 43 12 5156 5478 576568127 576568453 1.100000e-72 285.0
31 TraesCS6A01G206300 chr2B 92.025 163 13 0 6175 6337 608226725 608226887 5.210000e-56 230.0
32 TraesCS6A01G206300 chr2B 92.857 84 6 0 6034 6117 548943809 548943726 9.100000e-24 122.0
33 TraesCS6A01G206300 chr1B 99.465 187 1 0 2512 2698 333493117 333493303 2.310000e-89 340.0
34 TraesCS6A01G206300 chr3B 98.936 188 2 0 2505 2692 701414614 701414801 2.990000e-88 337.0
35 TraesCS6A01G206300 chr3B 93.976 83 5 0 6035 6117 71400462 71400380 7.030000e-25 126.0
36 TraesCS6A01G206300 chr3B 91.954 87 7 0 6031 6117 581090095 581090009 9.100000e-24 122.0
37 TraesCS6A01G206300 chr1A 98.936 188 1 1 2507 2694 62578194 62578380 1.070000e-87 335.0
38 TraesCS6A01G206300 chr1A 97.927 193 3 1 2501 2692 3675299 3675107 3.860000e-87 333.0
39 TraesCS6A01G206300 chr1A 90.643 171 15 1 6168 6337 530513555 530513385 6.740000e-55 226.0
40 TraesCS6A01G206300 chr1D 86.688 308 27 7 1458 1765 211985941 211986234 5.000000e-86 329.0
41 TraesCS6A01G206300 chr7A 86.364 308 28 7 1458 1765 32963729 32963436 2.320000e-84 324.0
42 TraesCS6A01G206300 chr7A 85.714 308 30 7 1458 1765 115783093 115782800 5.030000e-81 313.0
43 TraesCS6A01G206300 chr3D 89.655 232 22 2 1469 1700 33365137 33365366 1.820000e-75 294.0
44 TraesCS6A01G206300 chr3D 91.566 166 13 1 6175 6340 200383978 200383814 1.870000e-55 228.0
45 TraesCS6A01G206300 chr3D 94.048 84 5 0 6034 6117 145198719 145198802 1.960000e-25 128.0
46 TraesCS6A01G206300 chr6D 89.520 229 23 1 1472 1700 233685274 233685047 8.480000e-74 289.0
47 TraesCS6A01G206300 chr6D 83.168 202 32 2 1764 1964 226584882 226584682 4.120000e-42 183.0
48 TraesCS6A01G206300 chr4A 91.975 162 13 0 6175 6336 137966979 137967140 1.870000e-55 228.0
49 TraesCS6A01G206300 chr4A 91.975 162 13 0 6175 6336 137972830 137972669 1.870000e-55 228.0
50 TraesCS6A01G206300 chr2D 91.018 167 14 1 6170 6336 299891550 299891715 2.420000e-54 224.0
51 TraesCS6A01G206300 chr2D 91.954 87 7 0 6031 6117 253816834 253816748 9.100000e-24 122.0
52 TraesCS6A01G206300 chr2D 84.722 72 8 2 1925 1995 408748442 408748373 1.200000e-07 69.4
53 TraesCS6A01G206300 chr7D 88.889 180 20 0 6157 6336 183790244 183790423 8.720000e-54 222.0
54 TraesCS6A01G206300 chr7D 88.776 98 9 2 6030 6127 508316735 508316640 1.180000e-22 119.0
55 TraesCS6A01G206300 chr7B 90.071 141 14 0 5156 5296 607317860 607318000 4.120000e-42 183.0
56 TraesCS6A01G206300 chr7B 88.652 141 16 0 5156 5296 190258950 190259090 8.910000e-39 172.0
57 TraesCS6A01G206300 chr2A 87.379 103 10 3 6034 6136 333764159 333764060 1.520000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G206300 chr6A 363515888 363522569 6681 True 4409.333333 12340 95.206667 1 6682 3 chr6A.!!$R1 6681
1 TraesCS6A01G206300 chr5A 664794792 664800914 6122 False 1216.000000 2961 91.670571 227 6024 7 chr5A.!!$F2 5797
2 TraesCS6A01G206300 chr4D 484389590 484396403 6813 False 883.900000 2630 93.908700 222 6682 10 chr4D.!!$F3 6460
3 TraesCS6A01G206300 chr6B 404363251 404364287 1036 True 1493.000000 1493 92.830000 993 2021 1 chr6B.!!$R1 1028

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
138 139 0.098025 CAAATACGCGCCGAAACCAT 59.902 50.000 5.73 0.0 0.00 3.55 F
989 1083 0.251787 AGGTGTTCTGATTTGGGGCC 60.252 55.000 0.00 0.0 0.00 5.80 F
2660 2781 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.0 44.78 4.85 F
2673 2794 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.0 38.40 4.00 F
3760 4110 0.184933 CAACCAACCTTCCACCTCCA 59.815 55.000 0.00 0.0 0.00 3.86 F
5139 5542 1.067071 GGTACCTATGGATACTGCGCC 60.067 57.143 4.18 0.0 37.61 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1104 1198 1.089920 CGGGCAGAAATCAGTCAAGG 58.910 55.000 0.00 0.00 0.0 3.61 R
2685 2806 0.035439 ATGTGTTGCTACGGAAGGGG 60.035 55.000 0.00 0.00 0.0 4.79 R
4523 4919 0.468226 ACAAAGCACGAGGACCTGAA 59.532 50.000 0.00 0.00 0.0 3.02 R
4569 4965 7.039714 CCATCACCTAGTACTGCTATCATTGTA 60.040 40.741 5.39 0.00 0.0 2.41 R
5670 6311 1.173444 ATAGGAGGCTAGGACGCGTG 61.173 60.000 20.70 2.28 0.0 5.34 R
6541 7201 0.038251 TGTTGTCTCACCTAGCTGCG 60.038 55.000 0.00 0.00 0.0 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.518151 CAATTACAACAACATATCTTGCAACA 57.482 30.769 0.00 0.00 0.00 3.33
26 27 8.976471 CAATTACAACAACATATCTTGCAACAA 58.024 29.630 0.00 0.00 0.00 2.83
27 28 9.539825 AATTACAACAACATATCTTGCAACAAA 57.460 25.926 0.00 0.00 0.00 2.83
28 29 6.826893 ACAACAACATATCTTGCAACAAAC 57.173 33.333 0.00 0.00 0.00 2.93
29 30 6.336566 ACAACAACATATCTTGCAACAAACA 58.663 32.000 0.00 0.00 0.00 2.83
30 31 6.985645 ACAACAACATATCTTGCAACAAACAT 59.014 30.769 0.00 0.00 0.00 2.71
31 32 7.169645 ACAACAACATATCTTGCAACAAACATC 59.830 33.333 0.00 0.00 0.00 3.06
32 33 6.158598 ACAACATATCTTGCAACAAACATCC 58.841 36.000 0.00 0.00 0.00 3.51
33 34 5.329035 ACATATCTTGCAACAAACATCCC 57.671 39.130 0.00 0.00 0.00 3.85
34 35 5.018809 ACATATCTTGCAACAAACATCCCT 58.981 37.500 0.00 0.00 0.00 4.20
35 36 5.126061 ACATATCTTGCAACAAACATCCCTC 59.874 40.000 0.00 0.00 0.00 4.30
36 37 1.879380 TCTTGCAACAAACATCCCTCG 59.121 47.619 0.00 0.00 0.00 4.63
37 38 0.313672 TTGCAACAAACATCCCTCGC 59.686 50.000 0.00 0.00 0.00 5.03
38 39 1.154225 GCAACAAACATCCCTCGCG 60.154 57.895 0.00 0.00 0.00 5.87
39 40 1.573829 GCAACAAACATCCCTCGCGA 61.574 55.000 9.26 9.26 0.00 5.87
40 41 1.086696 CAACAAACATCCCTCGCGAT 58.913 50.000 10.36 0.00 0.00 4.58
41 42 2.276201 CAACAAACATCCCTCGCGATA 58.724 47.619 10.36 0.00 0.00 2.92
42 43 2.872245 CAACAAACATCCCTCGCGATAT 59.128 45.455 10.36 0.37 0.00 1.63
43 44 2.755650 ACAAACATCCCTCGCGATATC 58.244 47.619 10.36 0.00 0.00 1.63
44 45 2.365617 ACAAACATCCCTCGCGATATCT 59.634 45.455 10.36 0.00 0.00 1.98
45 46 2.989840 CAAACATCCCTCGCGATATCTC 59.010 50.000 10.36 0.00 0.00 2.75
46 47 1.911057 ACATCCCTCGCGATATCTCA 58.089 50.000 10.36 0.00 0.00 3.27
47 48 1.815613 ACATCCCTCGCGATATCTCAG 59.184 52.381 10.36 0.00 0.00 3.35
48 49 1.815613 CATCCCTCGCGATATCTCAGT 59.184 52.381 10.36 0.00 0.00 3.41
49 50 1.524848 TCCCTCGCGATATCTCAGTC 58.475 55.000 10.36 0.00 0.00 3.51
50 51 0.167033 CCCTCGCGATATCTCAGTCG 59.833 60.000 10.36 0.00 40.62 4.18
51 52 0.869068 CCTCGCGATATCTCAGTCGT 59.131 55.000 10.36 0.00 39.87 4.34
52 53 1.136197 CCTCGCGATATCTCAGTCGTC 60.136 57.143 10.36 0.00 39.87 4.20
53 54 1.527311 CTCGCGATATCTCAGTCGTCA 59.473 52.381 10.36 0.00 39.87 4.35
54 55 2.143925 TCGCGATATCTCAGTCGTCAT 58.856 47.619 3.71 0.00 39.87 3.06
55 56 3.323243 TCGCGATATCTCAGTCGTCATA 58.677 45.455 3.71 0.00 39.87 2.15
56 57 3.123116 TCGCGATATCTCAGTCGTCATAC 59.877 47.826 3.71 0.00 39.87 2.39
57 58 3.409049 GCGATATCTCAGTCGTCATACG 58.591 50.000 0.34 0.00 44.19 3.06
58 59 3.120615 GCGATATCTCAGTCGTCATACGT 60.121 47.826 0.34 0.00 43.14 3.57
59 60 4.610905 GCGATATCTCAGTCGTCATACGTT 60.611 45.833 0.00 0.00 43.14 3.99
60 61 5.389202 GCGATATCTCAGTCGTCATACGTTA 60.389 44.000 0.00 0.00 43.14 3.18
61 62 6.672596 GCGATATCTCAGTCGTCATACGTTAT 60.673 42.308 0.00 0.00 43.14 1.89
62 63 7.463780 GCGATATCTCAGTCGTCATACGTTATA 60.464 40.741 0.00 0.00 43.14 0.98
63 64 7.840317 CGATATCTCAGTCGTCATACGTTATAC 59.160 40.741 0.00 0.00 43.14 1.47
76 77 3.876210 CGTTATACGTATGCGCATACC 57.124 47.619 40.44 28.67 40.31 2.73
77 78 2.274484 CGTTATACGTATGCGCATACCG 59.726 50.000 40.44 35.68 40.31 4.02
88 89 2.706555 CGCATACCGCTCTATCTCAA 57.293 50.000 0.00 0.00 39.08 3.02
89 90 2.590073 CGCATACCGCTCTATCTCAAG 58.410 52.381 0.00 0.00 39.08 3.02
90 91 2.226674 CGCATACCGCTCTATCTCAAGA 59.773 50.000 0.00 0.00 39.08 3.02
91 92 3.304726 CGCATACCGCTCTATCTCAAGAA 60.305 47.826 0.00 0.00 39.08 2.52
92 93 4.621991 GCATACCGCTCTATCTCAAGAAA 58.378 43.478 0.00 0.00 37.77 2.52
93 94 5.050490 GCATACCGCTCTATCTCAAGAAAA 58.950 41.667 0.00 0.00 37.77 2.29
94 95 5.523916 GCATACCGCTCTATCTCAAGAAAAA 59.476 40.000 0.00 0.00 37.77 1.94
95 96 6.203723 GCATACCGCTCTATCTCAAGAAAAAT 59.796 38.462 0.00 0.00 37.77 1.82
96 97 7.570324 GCATACCGCTCTATCTCAAGAAAAATC 60.570 40.741 0.00 0.00 37.77 2.17
97 98 5.119694 ACCGCTCTATCTCAAGAAAAATCC 58.880 41.667 0.00 0.00 0.00 3.01
98 99 4.210120 CCGCTCTATCTCAAGAAAAATCCG 59.790 45.833 0.00 0.00 0.00 4.18
99 100 5.043903 CGCTCTATCTCAAGAAAAATCCGA 58.956 41.667 0.00 0.00 0.00 4.55
100 101 5.051374 CGCTCTATCTCAAGAAAAATCCGAC 60.051 44.000 0.00 0.00 0.00 4.79
101 102 5.051374 GCTCTATCTCAAGAAAAATCCGACG 60.051 44.000 0.00 0.00 0.00 5.12
102 103 5.348986 TCTATCTCAAGAAAAATCCGACGG 58.651 41.667 7.84 7.84 0.00 4.79
103 104 3.671008 TCTCAAGAAAAATCCGACGGA 57.329 42.857 20.85 20.85 35.55 4.69
104 105 4.202245 TCTCAAGAAAAATCCGACGGAT 57.798 40.909 23.78 23.78 45.46 4.18
105 106 4.181578 TCTCAAGAAAAATCCGACGGATC 58.818 43.478 28.81 17.56 42.27 3.36
106 107 3.932710 CTCAAGAAAAATCCGACGGATCA 59.067 43.478 28.81 2.54 42.27 2.92
107 108 4.320023 TCAAGAAAAATCCGACGGATCAA 58.680 39.130 28.81 2.12 42.27 2.57
108 109 4.757657 TCAAGAAAAATCCGACGGATCAAA 59.242 37.500 28.81 1.68 42.27 2.69
109 110 4.946784 AGAAAAATCCGACGGATCAAAG 57.053 40.909 28.81 0.00 42.27 2.77
110 111 4.575885 AGAAAAATCCGACGGATCAAAGA 58.424 39.130 28.81 0.00 42.27 2.52
111 112 4.631813 AGAAAAATCCGACGGATCAAAGAG 59.368 41.667 28.81 0.00 42.27 2.85
112 113 2.604046 AATCCGACGGATCAAAGAGG 57.396 50.000 28.81 0.00 42.27 3.69
113 114 0.753262 ATCCGACGGATCAAAGAGGG 59.247 55.000 23.78 0.00 38.09 4.30
114 115 1.521681 CCGACGGATCAAAGAGGGC 60.522 63.158 8.64 0.00 0.00 5.19
115 116 1.218047 CGACGGATCAAAGAGGGCA 59.782 57.895 0.00 0.00 0.00 5.36
116 117 1.084370 CGACGGATCAAAGAGGGCAC 61.084 60.000 0.00 0.00 0.00 5.01
129 130 2.202427 GGCACCACAAATACGCGC 60.202 61.111 5.73 0.00 0.00 6.86
130 131 2.202427 GCACCACAAATACGCGCC 60.202 61.111 5.73 0.00 0.00 6.53
131 132 2.097538 CACCACAAATACGCGCCG 59.902 61.111 5.73 0.00 0.00 6.46
132 133 2.048033 ACCACAAATACGCGCCGA 60.048 55.556 5.73 0.00 0.00 5.54
133 134 1.668472 ACCACAAATACGCGCCGAA 60.668 52.632 5.73 0.00 0.00 4.30
134 135 1.229315 ACCACAAATACGCGCCGAAA 61.229 50.000 5.73 0.00 0.00 3.46
135 136 0.791610 CCACAAATACGCGCCGAAAC 60.792 55.000 5.73 0.00 0.00 2.78
136 137 0.791610 CACAAATACGCGCCGAAACC 60.792 55.000 5.73 0.00 0.00 3.27
137 138 1.229315 ACAAATACGCGCCGAAACCA 61.229 50.000 5.73 0.00 0.00 3.67
138 139 0.098025 CAAATACGCGCCGAAACCAT 59.902 50.000 5.73 0.00 0.00 3.55
139 140 0.375803 AAATACGCGCCGAAACCATC 59.624 50.000 5.73 0.00 0.00 3.51
140 141 0.741574 AATACGCGCCGAAACCATCA 60.742 50.000 5.73 0.00 0.00 3.07
141 142 0.741574 ATACGCGCCGAAACCATCAA 60.742 50.000 5.73 0.00 0.00 2.57
142 143 0.949588 TACGCGCCGAAACCATCAAA 60.950 50.000 5.73 0.00 0.00 2.69
143 144 1.081774 CGCGCCGAAACCATCAAAA 60.082 52.632 0.00 0.00 0.00 2.44
144 145 0.661780 CGCGCCGAAACCATCAAAAA 60.662 50.000 0.00 0.00 0.00 1.94
197 198 4.681978 GGCGCGTGAACTGAGGGT 62.682 66.667 8.43 0.00 0.00 4.34
198 199 3.414700 GCGCGTGAACTGAGGGTG 61.415 66.667 8.43 0.00 0.00 4.61
199 200 2.338620 CGCGTGAACTGAGGGTGA 59.661 61.111 0.00 0.00 0.00 4.02
200 201 2.022129 CGCGTGAACTGAGGGTGAC 61.022 63.158 0.00 0.00 0.00 3.67
201 202 1.069090 GCGTGAACTGAGGGTGACA 59.931 57.895 0.00 0.00 0.00 3.58
202 203 0.320771 GCGTGAACTGAGGGTGACAT 60.321 55.000 0.00 0.00 0.00 3.06
203 204 1.432514 CGTGAACTGAGGGTGACATG 58.567 55.000 0.00 0.00 0.00 3.21
204 205 1.160137 GTGAACTGAGGGTGACATGC 58.840 55.000 0.00 0.00 0.00 4.06
205 206 0.320683 TGAACTGAGGGTGACATGCG 60.321 55.000 0.00 0.00 0.00 4.73
206 207 1.003355 AACTGAGGGTGACATGCGG 60.003 57.895 0.00 0.00 0.00 5.69
207 208 2.124983 CTGAGGGTGACATGCGGG 60.125 66.667 0.00 0.00 0.00 6.13
208 209 4.408821 TGAGGGTGACATGCGGGC 62.409 66.667 0.00 0.00 0.00 6.13
356 370 3.018840 GCCAGGAAAACCGTACGCG 62.019 63.158 10.49 3.53 37.95 6.01
360 374 3.770424 GAAAACCGTACGCGCGCT 61.770 61.111 32.58 19.60 36.67 5.92
379 393 2.050077 CAGTCACGCTCACGCTCA 60.050 61.111 0.00 0.00 45.53 4.26
380 394 2.049985 AGTCACGCTCACGCTCAC 60.050 61.111 0.00 0.00 45.53 3.51
386 400 2.202544 GCTCACGCTCACTCTCCG 60.203 66.667 0.00 0.00 0.00 4.63
390 404 2.360600 ACGCTCACTCTCCGCTCT 60.361 61.111 0.00 0.00 0.00 4.09
392 406 2.112198 CGCTCACTCTCCGCTCTCT 61.112 63.158 0.00 0.00 0.00 3.10
452 478 1.209504 CACGAGTCTCTCTCCCTCTCT 59.790 57.143 0.00 0.00 39.84 3.10
456 482 3.041946 GAGTCTCTCTCCCTCTCTCTCT 58.958 54.545 0.00 0.00 37.22 3.10
460 486 2.370189 CTCTCTCCCTCTCTCTCTCTCC 59.630 59.091 0.00 0.00 0.00 3.71
472 532 2.260088 CTCTCTCCCTCTCCGTCCGT 62.260 65.000 0.00 0.00 0.00 4.69
473 533 1.820481 CTCTCCCTCTCCGTCCGTC 60.820 68.421 0.00 0.00 0.00 4.79
506 566 2.048222 CAAGGCCGCGAGACTGAA 60.048 61.111 8.23 0.00 0.00 3.02
556 622 4.201724 CGATCTCGATTTTGGTTCAGGTTC 60.202 45.833 0.00 0.00 43.02 3.62
588 654 3.397439 GCCAGCCAGAGAGCCAGA 61.397 66.667 0.00 0.00 0.00 3.86
589 655 2.901813 CCAGCCAGAGAGCCAGAG 59.098 66.667 0.00 0.00 0.00 3.35
590 656 1.988956 CCAGCCAGAGAGCCAGAGT 60.989 63.158 0.00 0.00 0.00 3.24
592 658 1.229145 AGCCAGAGAGCCAGAGTGT 60.229 57.895 0.00 0.00 0.00 3.55
593 659 1.079266 GCCAGAGAGCCAGAGTGTG 60.079 63.158 0.00 0.00 0.00 3.82
685 764 2.124693 CGCTGTCCTCCTCCTCCTC 61.125 68.421 0.00 0.00 0.00 3.71
791 876 3.211963 GCAATCCATCGCCCGCTT 61.212 61.111 0.00 0.00 0.00 4.68
988 1082 0.890683 CAGGTGTTCTGATTTGGGGC 59.109 55.000 0.00 0.00 46.18 5.80
989 1083 0.251787 AGGTGTTCTGATTTGGGGCC 60.252 55.000 0.00 0.00 0.00 5.80
990 1084 1.595093 GGTGTTCTGATTTGGGGCCG 61.595 60.000 0.00 0.00 0.00 6.13
991 1085 1.304052 TGTTCTGATTTGGGGCCGG 60.304 57.895 0.00 0.00 0.00 6.13
1101 1195 1.572941 CGACGACGACTCAGGTTCA 59.427 57.895 0.00 0.00 42.66 3.18
1104 1198 2.251893 GACGACGACTCAGGTTCATTC 58.748 52.381 0.00 0.00 0.00 2.67
1206 1300 0.528470 CCGTGTTGTGTTGTTGGGTT 59.472 50.000 0.00 0.00 0.00 4.11
1207 1301 1.623359 CGTGTTGTGTTGTTGGGTTG 58.377 50.000 0.00 0.00 0.00 3.77
1208 1302 1.734047 CGTGTTGTGTTGTTGGGTTGG 60.734 52.381 0.00 0.00 0.00 3.77
1209 1303 0.898320 TGTTGTGTTGTTGGGTTGGG 59.102 50.000 0.00 0.00 0.00 4.12
1210 1304 0.899019 GTTGTGTTGTTGGGTTGGGT 59.101 50.000 0.00 0.00 0.00 4.51
1408 1514 4.821589 GCGAGTTCCCCTGCTCCG 62.822 72.222 0.00 0.00 0.00 4.63
1443 1549 3.961414 GCCCTGGTTTCCGGTGGA 61.961 66.667 0.00 0.00 0.00 4.02
1444 1550 2.840576 CCCTGGTTTCCGGTGGAA 59.159 61.111 0.00 0.00 40.27 3.53
1720 1830 7.233348 ACTTCTTCTCAGAATTCTTCAGACTCT 59.767 37.037 4.86 0.00 38.42 3.24
1805 1919 4.023707 GGCTATCCTTCATAATGTGTGTGC 60.024 45.833 0.00 0.00 0.00 4.57
1900 2017 5.457487 GGTTTGGGAAATCAAAGGGGAAAAT 60.457 40.000 0.00 0.00 37.31 1.82
1970 2089 3.009584 GGGAAAGAGGTGACTTTGAGGAT 59.990 47.826 0.00 0.00 44.43 3.24
1971 2090 4.507512 GGGAAAGAGGTGACTTTGAGGATT 60.508 45.833 0.00 0.00 44.43 3.01
2036 2155 2.863137 GCTGCTGTCTGTTAGTCTATGC 59.137 50.000 0.00 0.00 0.00 3.14
2069 2188 7.812648 TGATAGTGGTGGAAAATAAAAAGTCG 58.187 34.615 0.00 0.00 0.00 4.18
2201 2320 8.697507 ATTTATTGGAGTTTCACTTTCTCAGT 57.302 30.769 0.00 0.00 35.35 3.41
2211 2330 5.089970 TCACTTTCTCAGTATCATGGTGG 57.910 43.478 0.00 0.00 32.76 4.61
2217 2336 7.942341 ACTTTCTCAGTATCATGGTGGTTTTTA 59.058 33.333 0.00 0.00 31.97 1.52
2218 2337 7.681939 TTCTCAGTATCATGGTGGTTTTTAC 57.318 36.000 0.00 0.00 0.00 2.01
2219 2338 7.016153 TCTCAGTATCATGGTGGTTTTTACT 57.984 36.000 0.00 0.00 0.00 2.24
2222 2342 7.881142 TCAGTATCATGGTGGTTTTTACTTTG 58.119 34.615 0.00 0.00 0.00 2.77
2264 2384 2.005370 TGACCGGGTTACTCAGTTCT 57.995 50.000 6.32 0.00 0.00 3.01
2424 2545 5.066505 AGGACACAAGTTTCATTCAACTGAC 59.933 40.000 0.00 0.00 37.07 3.51
2441 2562 9.516314 TTCAACTGACGTATACTTTGAGATATG 57.484 33.333 0.56 0.00 0.00 1.78
2501 2622 6.071896 TGGCACAAATGTTTAAATGACCGATA 60.072 34.615 0.00 0.00 31.92 2.92
2515 2636 8.758633 AAATGACCGATACGATATAGAAAAGG 57.241 34.615 0.00 0.00 0.00 3.11
2516 2637 6.263516 TGACCGATACGATATAGAAAAGGG 57.736 41.667 0.00 0.00 0.00 3.95
2517 2638 5.069501 ACCGATACGATATAGAAAAGGGC 57.930 43.478 0.00 0.00 0.00 5.19
2520 2641 5.347907 CCGATACGATATAGAAAAGGGCAAC 59.652 44.000 0.00 0.00 0.00 4.17
2532 2653 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
2533 2654 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
2534 2655 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
2535 2656 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
2536 2657 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
2542 2663 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2543 2664 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2544 2665 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2545 2666 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2548 2669 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2560 2681 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
2561 2682 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
2562 2683 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
2563 2684 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
2564 2685 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
2565 2686 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
2574 2695 3.842069 GGAAGGGTCCAACCACTTT 57.158 52.632 0.00 0.00 44.26 2.66
2575 2696 1.328279 GGAAGGGTCCAACCACTTTG 58.672 55.000 0.00 0.00 44.26 2.77
2588 2709 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
2589 2710 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
2590 2711 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
2591 2712 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
2592 2713 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
2593 2714 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
2594 2715 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
2595 2716 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
2596 2717 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
2597 2718 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
2598 2719 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
2599 2720 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
2600 2721 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
2601 2722 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
2602 2723 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
2603 2724 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
2604 2725 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
2605 2726 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
2606 2727 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
2607 2728 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
2608 2729 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
2609 2730 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
2610 2731 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
2611 2732 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
2612 2733 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
2613 2734 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
2614 2735 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
2626 2747 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
2627 2748 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
2628 2749 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
2629 2750 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
2630 2751 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
2631 2752 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
2632 2753 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
2633 2754 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
2634 2755 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
2635 2756 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
2636 2757 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
2637 2758 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
2638 2759 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
2639 2760 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
2640 2761 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
2641 2762 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
2642 2763 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
2643 2764 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
2644 2765 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
2645 2766 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
2646 2767 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
2647 2768 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
2659 2780 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
2660 2781 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
2661 2782 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
2662 2783 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
2663 2784 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
2664 2785 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
2665 2786 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
2666 2787 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
2667 2788 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
2668 2789 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
2669 2790 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
2670 2791 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
2671 2792 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
2672 2793 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
2673 2794 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
2674 2795 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
2678 2799 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
2679 2800 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
2680 2801 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
2681 2802 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
2682 2803 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
2683 2804 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
2684 2805 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
2685 2806 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
2734 2855 4.325028 TTTGCTAGTACGAACACTGGAA 57.675 40.909 0.00 0.00 0.00 3.53
2749 2870 4.276926 ACACTGGAAGAAAAACATCTGAGC 59.723 41.667 0.00 0.00 37.43 4.26
2770 2891 5.660460 AGCACCAAAAGTTAAACCTTCAAG 58.340 37.500 0.00 0.00 0.00 3.02
2821 2942 1.299541 GCAATACATGTGGGTCCTCG 58.700 55.000 9.11 0.00 0.00 4.63
2830 2951 1.609210 TGGGTCCTCGCACATGAGA 60.609 57.895 0.00 0.00 38.28 3.27
2895 3016 3.643159 AAAGAAAAACTCGACCCATGC 57.357 42.857 0.00 0.00 0.00 4.06
2901 3022 0.960364 AACTCGACCCATGCGCAATT 60.960 50.000 17.11 0.00 0.00 2.32
3203 3324 1.147824 CTGATGCTGGGCCTCGAAT 59.852 57.895 4.53 0.00 0.00 3.34
3248 3369 3.077556 ACCCGCACTCCTAGCCAG 61.078 66.667 0.00 0.00 0.00 4.85
3255 3376 4.277593 CTCCTAGCCAGGCGAGCG 62.278 72.222 15.99 9.47 42.30 5.03
3256 3377 4.815108 TCCTAGCCAGGCGAGCGA 62.815 66.667 15.99 11.55 42.30 4.93
3259 3380 4.592192 TAGCCAGGCGAGCGATGC 62.592 66.667 5.55 0.00 34.64 3.91
3270 3391 4.504132 GCGATGCTCGGTTCTCTT 57.496 55.556 7.50 0.00 40.84 2.85
3271 3392 2.292803 GCGATGCTCGGTTCTCTTC 58.707 57.895 7.50 0.00 40.84 2.87
3272 3393 1.148759 GCGATGCTCGGTTCTCTTCC 61.149 60.000 7.50 0.00 40.84 3.46
3274 3395 1.134965 CGATGCTCGGTTCTCTTCCTT 60.135 52.381 0.00 0.00 36.00 3.36
3278 3399 4.345859 TGCTCGGTTCTCTTCCTTTTTA 57.654 40.909 0.00 0.00 0.00 1.52
3279 3400 4.315803 TGCTCGGTTCTCTTCCTTTTTAG 58.684 43.478 0.00 0.00 0.00 1.85
3282 3405 4.969484 TCGGTTCTCTTCCTTTTTAGCTT 58.031 39.130 0.00 0.00 0.00 3.74
3314 3437 6.488006 TCTGCTTTAATAGAATTCAGGATGCC 59.512 38.462 8.44 0.00 34.76 4.40
3315 3438 6.367983 TGCTTTAATAGAATTCAGGATGCCT 58.632 36.000 8.44 0.00 34.76 4.75
3376 3661 5.972935 TCGTGAAGAAACAATAGGCAGATA 58.027 37.500 0.00 0.00 0.00 1.98
3381 3666 9.294030 GTGAAGAAACAATAGGCAGATATTTTG 57.706 33.333 0.00 0.00 0.00 2.44
3389 3674 9.277783 ACAATAGGCAGATATTTTGTCTGTATC 57.722 33.333 5.76 0.00 43.86 2.24
3392 3677 7.559590 AGGCAGATATTTTGTCTGTATCAAC 57.440 36.000 5.19 0.00 43.86 3.18
3397 3682 9.764870 CAGATATTTTGTCTGTATCAACTGTTG 57.235 33.333 14.24 14.24 38.58 3.33
3401 3686 4.415881 TGTCTGTATCAACTGTTGGTGT 57.584 40.909 19.55 9.36 0.00 4.16
3404 3689 7.234661 TGTCTGTATCAACTGTTGGTGTATA 57.765 36.000 19.55 7.91 0.00 1.47
3444 3729 2.268920 GATGCTGGGCCTCGAACA 59.731 61.111 4.53 0.00 0.00 3.18
3450 3735 4.324991 GGGCCTCGAACACGGGTT 62.325 66.667 0.56 0.56 40.76 4.11
3559 3909 9.521503 GAAGAAACAATAGGGCTGATATTTTTC 57.478 33.333 0.00 0.00 0.00 2.29
3618 3968 5.560183 CGTTGCTCGGTTCTTTTTCTATGTT 60.560 40.000 0.00 0.00 35.71 2.71
3619 3969 5.607119 TGCTCGGTTCTTTTTCTATGTTC 57.393 39.130 0.00 0.00 0.00 3.18
3623 3973 6.620949 GCTCGGTTCTTTTTCTATGTTCCTTC 60.621 42.308 0.00 0.00 0.00 3.46
3760 4110 0.184933 CAACCAACCTTCCACCTCCA 59.815 55.000 0.00 0.00 0.00 3.86
3765 4115 1.956477 CAACCTTCCACCTCCAGTTTG 59.044 52.381 0.00 0.00 0.00 2.93
3799 4149 7.153985 TGGATTCAGATTGGAATTTTGTGTTC 58.846 34.615 0.00 0.00 37.61 3.18
4004 4356 1.372087 CTCTGCCATCGCCTTTGTCC 61.372 60.000 0.00 0.00 0.00 4.02
4038 4390 8.911918 TGTTTTCTTGTAAGGCTGAATACTTA 57.088 30.769 0.00 0.00 0.00 2.24
4059 4411 8.854614 ACTTAGCAAGATTTCTGAAACTATGT 57.145 30.769 4.73 7.47 0.00 2.29
4081 4433 5.181748 GTGTATGCTGTCTCCTCTTTCAAT 58.818 41.667 0.00 0.00 0.00 2.57
4289 4685 7.384115 GCACGTGAGAAGTATTATTGGCTAATA 59.616 37.037 22.23 0.00 32.26 0.98
4442 4838 6.849588 AAAGCAACCTTTTTGATGATTGAC 57.150 33.333 0.00 0.00 38.06 3.18
4521 4917 4.014406 GTCCCCACGGAAATTATTGAAGT 58.986 43.478 0.00 0.00 40.92 3.01
4523 4919 5.047590 GTCCCCACGGAAATTATTGAAGTTT 60.048 40.000 0.00 0.00 40.92 2.66
4647 5043 9.088987 TCTGCAAAGTTCCTTTATTTTCCTAAT 57.911 29.630 0.00 0.00 31.96 1.73
4698 5094 5.811190 TGCTAAACTTAGGCCAATACTTCA 58.189 37.500 5.01 0.00 0.00 3.02
4782 5185 7.595502 CGTACTTTCTGTTTCTTGTCTCACTAT 59.404 37.037 0.00 0.00 0.00 2.12
4852 5255 7.810658 ACTGAATGAAACATCATGTACACTTC 58.189 34.615 0.00 0.00 0.00 3.01
5139 5542 1.067071 GGTACCTATGGATACTGCGCC 60.067 57.143 4.18 0.00 37.61 6.53
5163 5566 2.147958 GATTACGTGGTGAGTGGCAAA 58.852 47.619 0.00 0.00 0.00 3.68
5265 5668 1.523484 GCCTAAGCCAGAGCAGAGC 60.523 63.158 0.00 0.00 43.56 4.09
5285 5688 2.159379 GCTTGCTAACATGGGTAAGCAC 60.159 50.000 22.51 8.57 45.63 4.40
5289 5692 2.683362 GCTAACATGGGTAAGCACTTCC 59.317 50.000 0.00 0.00 35.05 3.46
5294 5697 1.145571 TGGGTAAGCACTTCCACCTT 58.854 50.000 3.09 0.00 0.00 3.50
5301 5942 3.290948 AGCACTTCCACCTTGTTGTAA 57.709 42.857 0.00 0.00 0.00 2.41
5352 5993 4.652822 AGGGTTACTCACACCTTCATTTC 58.347 43.478 0.00 0.00 34.36 2.17
5353 5994 4.104102 AGGGTTACTCACACCTTCATTTCA 59.896 41.667 0.00 0.00 34.36 2.69
5354 5995 5.010282 GGGTTACTCACACCTTCATTTCAT 58.990 41.667 0.00 0.00 34.36 2.57
5670 6311 4.828925 GCAGGAGGGTCTCGCAGC 62.829 72.222 0.00 0.00 0.00 5.25
5721 6362 1.363443 CCTGGCGAGAGAGATGAGC 59.637 63.158 0.00 0.00 0.00 4.26
5804 6445 3.935828 GGCTGTATGGAAGAGAAACTGTC 59.064 47.826 0.00 0.00 0.00 3.51
5821 6462 7.657761 AGAAACTGTCGAAATGTCATAGAGTTT 59.342 33.333 9.17 9.17 36.44 2.66
5842 6483 0.250234 AGCTGACTGTGTGTGTGTGT 59.750 50.000 0.00 0.00 0.00 3.72
5843 6484 0.374758 GCTGACTGTGTGTGTGTGTG 59.625 55.000 0.00 0.00 0.00 3.82
5844 6485 1.725641 CTGACTGTGTGTGTGTGTGT 58.274 50.000 0.00 0.00 0.00 3.72
5845 6486 1.394572 CTGACTGTGTGTGTGTGTGTG 59.605 52.381 0.00 0.00 0.00 3.82
5846 6487 1.270571 TGACTGTGTGTGTGTGTGTGT 60.271 47.619 0.00 0.00 0.00 3.72
5847 6488 1.128507 GACTGTGTGTGTGTGTGTGTG 59.871 52.381 0.00 0.00 0.00 3.82
5848 6489 1.155889 CTGTGTGTGTGTGTGTGTGT 58.844 50.000 0.00 0.00 0.00 3.72
5849 6490 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5850 6491 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5851 6492 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5852 6493 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5853 6494 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5854 6495 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5939 6589 4.559153 TGTACATATGATCAGTCATGCGG 58.441 43.478 10.38 0.00 44.62 5.69
6008 6658 5.428184 TTGGATTTTTGGTCAGGTTGTTT 57.572 34.783 0.00 0.00 0.00 2.83
6045 6695 1.027357 TGCGTATTACTCCCTCCGTC 58.973 55.000 0.00 0.00 0.00 4.79
6046 6696 0.313357 GCGTATTACTCCCTCCGTCC 59.687 60.000 0.00 0.00 0.00 4.79
6060 6710 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
6096 6746 8.642020 GCTAACATAGTTTGAAAAGCATTCTTG 58.358 33.333 4.23 0.00 31.78 3.02
6116 6766 3.248024 TGTATTGTGGGACAGAGGAAGT 58.752 45.455 0.00 0.00 41.80 3.01
6151 6801 9.577110 TTCTTCAAAAGAGCAATGCTATTATTG 57.423 29.630 15.84 18.89 39.25 1.90
6184 6842 8.265165 GTTTTACATAAAACCTACTCCCTCTG 57.735 38.462 13.90 0.00 45.62 3.35
6185 6843 7.563724 TTTACATAAAACCTACTCCCTCTGT 57.436 36.000 0.00 0.00 0.00 3.41
6186 6844 7.563724 TTACATAAAACCTACTCCCTCTGTT 57.436 36.000 0.00 0.00 0.00 3.16
6187 6845 6.051179 ACATAAAACCTACTCCCTCTGTTC 57.949 41.667 0.00 0.00 0.00 3.18
6188 6846 5.045797 ACATAAAACCTACTCCCTCTGTTCC 60.046 44.000 0.00 0.00 0.00 3.62
6189 6847 3.277416 AAACCTACTCCCTCTGTTCCT 57.723 47.619 0.00 0.00 0.00 3.36
6191 6849 4.415224 AACCTACTCCCTCTGTTCCTAA 57.585 45.455 0.00 0.00 0.00 2.69
6192 6850 4.415224 ACCTACTCCCTCTGTTCCTAAA 57.585 45.455 0.00 0.00 0.00 1.85
6194 6852 6.101274 ACCTACTCCCTCTGTTCCTAAATA 57.899 41.667 0.00 0.00 0.00 1.40
6195 6853 6.694611 ACCTACTCCCTCTGTTCCTAAATAT 58.305 40.000 0.00 0.00 0.00 1.28
6196 6854 7.834046 ACCTACTCCCTCTGTTCCTAAATATA 58.166 38.462 0.00 0.00 0.00 0.86
6197 6855 8.294690 ACCTACTCCCTCTGTTCCTAAATATAA 58.705 37.037 0.00 0.00 0.00 0.98
6199 6857 9.369672 CTACTCCCTCTGTTCCTAAATATAAGT 57.630 37.037 0.00 0.00 0.00 2.24
6201 6859 8.068733 ACTCCCTCTGTTCCTAAATATAAGTCT 58.931 37.037 0.00 0.00 0.00 3.24
6202 6860 8.855804 TCCCTCTGTTCCTAAATATAAGTCTT 57.144 34.615 0.00 0.00 0.00 3.01
6204 6862 9.549078 CCCTCTGTTCCTAAATATAAGTCTTTC 57.451 37.037 0.00 0.00 0.00 2.62
6279 6937 8.928270 AGTGTAGATTCACTTATTTTACTCCG 57.072 34.615 0.00 0.00 44.92 4.63
6280 6938 8.529476 AGTGTAGATTCACTTATTTTACTCCGT 58.471 33.333 0.00 0.00 44.92 4.69
6281 6939 9.793252 GTGTAGATTCACTTATTTTACTCCGTA 57.207 33.333 0.00 0.00 35.68 4.02
6289 6947 9.754382 TCACTTATTTTACTCCGTATGTAATCC 57.246 33.333 0.00 0.00 31.13 3.01
6290 6948 8.697067 CACTTATTTTACTCCGTATGTAATCCG 58.303 37.037 0.00 0.00 31.13 4.18
6291 6949 8.632679 ACTTATTTTACTCCGTATGTAATCCGA 58.367 33.333 0.00 0.00 31.13 4.55
6292 6950 9.467258 CTTATTTTACTCCGTATGTAATCCGAA 57.533 33.333 0.00 0.00 31.13 4.30
6293 6951 7.704789 ATTTTACTCCGTATGTAATCCGAAC 57.295 36.000 0.00 0.00 31.13 3.95
6294 6952 6.455360 TTTACTCCGTATGTAATCCGAACT 57.545 37.500 0.00 0.00 31.13 3.01
6295 6953 4.303086 ACTCCGTATGTAATCCGAACTG 57.697 45.455 0.00 0.00 0.00 3.16
6296 6954 3.949754 ACTCCGTATGTAATCCGAACTGA 59.050 43.478 0.00 0.00 0.00 3.41
6297 6955 4.400251 ACTCCGTATGTAATCCGAACTGAA 59.600 41.667 0.00 0.00 0.00 3.02
6298 6956 5.105635 ACTCCGTATGTAATCCGAACTGAAA 60.106 40.000 0.00 0.00 0.00 2.69
6299 6957 5.909477 TCCGTATGTAATCCGAACTGAAAT 58.091 37.500 0.00 0.00 0.00 2.17
6300 6958 5.981315 TCCGTATGTAATCCGAACTGAAATC 59.019 40.000 0.00 0.00 0.00 2.17
6301 6959 5.983720 CCGTATGTAATCCGAACTGAAATCT 59.016 40.000 0.00 0.00 0.00 2.40
6302 6960 6.144080 CCGTATGTAATCCGAACTGAAATCTC 59.856 42.308 0.00 0.00 0.00 2.75
6303 6961 6.918569 CGTATGTAATCCGAACTGAAATCTCT 59.081 38.462 0.00 0.00 0.00 3.10
6304 6962 8.074370 CGTATGTAATCCGAACTGAAATCTCTA 58.926 37.037 0.00 0.00 0.00 2.43
6305 6963 9.745880 GTATGTAATCCGAACTGAAATCTCTAA 57.254 33.333 0.00 0.00 0.00 2.10
6307 6965 9.667107 ATGTAATCCGAACTGAAATCTCTAAAA 57.333 29.630 0.00 0.00 0.00 1.52
6308 6966 9.496873 TGTAATCCGAACTGAAATCTCTAAAAA 57.503 29.630 0.00 0.00 0.00 1.94
6309 6967 9.974750 GTAATCCGAACTGAAATCTCTAAAAAG 57.025 33.333 0.00 0.00 0.00 2.27
6310 6968 8.848474 AATCCGAACTGAAATCTCTAAAAAGA 57.152 30.769 0.00 0.00 0.00 2.52
6311 6969 7.653767 TCCGAACTGAAATCTCTAAAAAGAC 57.346 36.000 0.00 0.00 0.00 3.01
6312 6970 7.442656 TCCGAACTGAAATCTCTAAAAAGACT 58.557 34.615 0.00 0.00 0.00 3.24
6313 6971 7.931948 TCCGAACTGAAATCTCTAAAAAGACTT 59.068 33.333 0.00 0.00 0.00 3.01
6314 6972 9.204570 CCGAACTGAAATCTCTAAAAAGACTTA 57.795 33.333 0.00 0.00 0.00 2.24
6330 6988 8.959705 AAAAGACTTATAATTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
6331 6989 7.909485 AAGACTTATAATTAGGAACGGAGGA 57.091 36.000 0.00 0.00 0.00 3.71
6332 6990 7.909485 AGACTTATAATTAGGAACGGAGGAA 57.091 36.000 0.00 0.00 0.00 3.36
6333 6991 7.953752 AGACTTATAATTAGGAACGGAGGAAG 58.046 38.462 0.00 0.00 0.00 3.46
6334 6992 7.564292 AGACTTATAATTAGGAACGGAGGAAGT 59.436 37.037 0.00 0.00 0.00 3.01
6335 6993 8.773033 ACTTATAATTAGGAACGGAGGAAGTA 57.227 34.615 0.00 0.00 0.00 2.24
6336 6994 8.858094 ACTTATAATTAGGAACGGAGGAAGTAG 58.142 37.037 0.00 0.00 0.00 2.57
6337 6995 8.773033 TTATAATTAGGAACGGAGGAAGTAGT 57.227 34.615 0.00 0.00 0.00 2.73
6338 6996 9.866655 TTATAATTAGGAACGGAGGAAGTAGTA 57.133 33.333 0.00 0.00 0.00 1.82
6339 6997 6.462552 AATTAGGAACGGAGGAAGTAGTAC 57.537 41.667 0.00 0.00 0.00 2.73
6340 6998 2.363683 AGGAACGGAGGAAGTAGTACG 58.636 52.381 0.00 0.00 0.00 3.67
6341 6999 2.087646 GGAACGGAGGAAGTAGTACGT 58.912 52.381 0.00 0.00 35.95 3.57
6342 7000 3.055094 AGGAACGGAGGAAGTAGTACGTA 60.055 47.826 0.00 0.00 33.85 3.57
6353 7011 5.641209 GGAAGTAGTACGTAGACTCTCACAA 59.359 44.000 9.84 0.00 0.00 3.33
6435 7093 9.533253 CCAAACAAGAGAAAAAGTATCAATGTT 57.467 29.630 0.00 0.00 31.04 2.71
6462 7120 4.142609 TCCAGTGGAAGATATTGTGCTC 57.857 45.455 10.20 0.00 0.00 4.26
6491 7149 2.439507 TGGGCAGAGTTTCTTCAGACTT 59.560 45.455 0.00 0.00 0.00 3.01
6502 7160 9.699703 GAGTTTCTTCAGACTTACAAATACTCT 57.300 33.333 0.00 0.00 0.00 3.24
6522 7180 4.672409 TCTGTGTGACGCAAGACATATAG 58.328 43.478 0.00 0.00 45.04 1.31
6523 7181 3.780902 TGTGTGACGCAAGACATATAGG 58.219 45.455 0.00 0.00 45.04 2.57
6541 7201 1.486726 AGGGATGACGGACCAAATCTC 59.513 52.381 0.00 0.00 0.00 2.75
6587 7696 0.315568 ACAGTCACGGAGAAGAGTGC 59.684 55.000 0.00 0.00 39.01 4.40
6642 7751 4.858433 CGCGGCCATGGCAATGTG 62.858 66.667 36.56 26.37 44.11 3.21
6646 7755 2.352821 GGCCATGGCAATGTGCTGA 61.353 57.895 36.56 0.00 44.28 4.26
6655 7764 2.019249 GCAATGTGCTGAATGCCTAGA 58.981 47.619 0.00 0.00 40.96 2.43
6666 7775 5.586243 GCTGAATGCCTAGAGTTTCATTGTA 59.414 40.000 0.00 0.00 35.15 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.518151 TGTTGCAAGATATGTTGTTGTAATTG 57.482 30.769 13.58 0.00 30.17 2.32
1 2 9.539825 TTTGTTGCAAGATATGTTGTTGTAATT 57.460 25.926 13.58 0.00 30.17 1.40
2 3 8.977505 GTTTGTTGCAAGATATGTTGTTGTAAT 58.022 29.630 13.58 0.00 30.17 1.89
3 4 7.976175 TGTTTGTTGCAAGATATGTTGTTGTAA 59.024 29.630 13.58 3.29 0.00 2.41
4 5 7.484140 TGTTTGTTGCAAGATATGTTGTTGTA 58.516 30.769 13.58 0.00 0.00 2.41
5 6 6.336566 TGTTTGTTGCAAGATATGTTGTTGT 58.663 32.000 13.58 0.00 0.00 3.32
6 7 6.825284 TGTTTGTTGCAAGATATGTTGTTG 57.175 33.333 13.58 0.00 0.00 3.33
7 8 6.646240 GGATGTTTGTTGCAAGATATGTTGTT 59.354 34.615 13.58 0.00 0.00 2.83
8 9 6.158598 GGATGTTTGTTGCAAGATATGTTGT 58.841 36.000 13.58 0.00 0.00 3.32
9 10 5.577945 GGGATGTTTGTTGCAAGATATGTTG 59.422 40.000 8.21 8.21 0.00 3.33
10 11 5.481473 AGGGATGTTTGTTGCAAGATATGTT 59.519 36.000 0.00 0.00 0.00 2.71
11 12 5.018809 AGGGATGTTTGTTGCAAGATATGT 58.981 37.500 0.00 0.00 0.00 2.29
12 13 5.585390 GAGGGATGTTTGTTGCAAGATATG 58.415 41.667 0.00 0.00 0.00 1.78
13 14 4.336433 CGAGGGATGTTTGTTGCAAGATAT 59.664 41.667 0.00 0.00 0.00 1.63
14 15 3.689161 CGAGGGATGTTTGTTGCAAGATA 59.311 43.478 0.00 0.00 0.00 1.98
15 16 2.489329 CGAGGGATGTTTGTTGCAAGAT 59.511 45.455 0.00 0.00 0.00 2.40
16 17 1.879380 CGAGGGATGTTTGTTGCAAGA 59.121 47.619 0.00 0.00 0.00 3.02
17 18 1.666888 GCGAGGGATGTTTGTTGCAAG 60.667 52.381 0.00 0.00 0.00 4.01
18 19 0.313672 GCGAGGGATGTTTGTTGCAA 59.686 50.000 0.00 0.00 0.00 4.08
19 20 1.851021 CGCGAGGGATGTTTGTTGCA 61.851 55.000 0.00 0.00 0.00 4.08
20 21 1.154225 CGCGAGGGATGTTTGTTGC 60.154 57.895 0.00 0.00 0.00 4.17
21 22 1.086696 ATCGCGAGGGATGTTTGTTG 58.913 50.000 16.66 0.00 0.00 3.33
22 23 2.684001 TATCGCGAGGGATGTTTGTT 57.316 45.000 16.66 0.00 0.00 2.83
23 24 2.365617 AGATATCGCGAGGGATGTTTGT 59.634 45.455 16.66 0.00 0.00 2.83
24 25 2.989840 GAGATATCGCGAGGGATGTTTG 59.010 50.000 16.66 0.00 0.00 2.93
25 26 2.628178 TGAGATATCGCGAGGGATGTTT 59.372 45.455 16.66 0.00 0.00 2.83
26 27 2.230025 CTGAGATATCGCGAGGGATGTT 59.770 50.000 16.66 0.00 0.00 2.71
27 28 1.815613 CTGAGATATCGCGAGGGATGT 59.184 52.381 16.66 6.37 0.00 3.06
28 29 1.815613 ACTGAGATATCGCGAGGGATG 59.184 52.381 16.66 3.93 0.00 3.51
29 30 2.088423 GACTGAGATATCGCGAGGGAT 58.912 52.381 16.66 7.87 0.00 3.85
30 31 1.524848 GACTGAGATATCGCGAGGGA 58.475 55.000 16.66 2.26 0.00 4.20
31 32 0.167033 CGACTGAGATATCGCGAGGG 59.833 60.000 16.66 1.75 0.00 4.30
32 33 0.869068 ACGACTGAGATATCGCGAGG 59.131 55.000 16.66 1.02 42.12 4.63
33 34 1.527311 TGACGACTGAGATATCGCGAG 59.473 52.381 16.66 0.54 42.12 5.03
34 35 1.578583 TGACGACTGAGATATCGCGA 58.421 50.000 13.09 13.09 42.12 5.87
35 36 2.603224 ATGACGACTGAGATATCGCG 57.397 50.000 0.00 0.00 42.12 5.87
36 37 3.120615 ACGTATGACGACTGAGATATCGC 60.121 47.826 5.94 0.00 46.05 4.58
37 38 4.648917 ACGTATGACGACTGAGATATCG 57.351 45.455 5.94 0.00 46.05 2.92
38 39 7.840317 CGTATAACGTATGACGACTGAGATATC 59.160 40.741 5.94 0.00 46.05 1.63
39 40 7.673651 CGTATAACGTATGACGACTGAGATAT 58.326 38.462 5.94 0.00 46.05 1.63
40 41 7.042320 CGTATAACGTATGACGACTGAGATA 57.958 40.000 5.94 0.00 46.05 1.98
41 42 5.913637 CGTATAACGTATGACGACTGAGAT 58.086 41.667 5.94 0.00 46.05 2.75
42 43 5.320607 CGTATAACGTATGACGACTGAGA 57.679 43.478 5.94 0.00 46.05 3.27
56 57 3.876210 GGTATGCGCATACGTATAACG 57.124 47.619 39.69 20.11 46.24 3.18
57 58 2.027214 GCGGTATGCGCATACGTATAAC 59.973 50.000 39.69 28.36 46.24 1.89
58 59 2.252747 GCGGTATGCGCATACGTATAA 58.747 47.619 39.69 17.18 46.24 0.98
59 60 1.898938 GCGGTATGCGCATACGTATA 58.101 50.000 39.69 17.88 43.15 1.47
60 61 2.733127 GCGGTATGCGCATACGTAT 58.267 52.632 39.69 17.91 46.73 3.06
61 62 4.231753 GCGGTATGCGCATACGTA 57.768 55.556 39.69 18.94 43.43 3.57
70 71 3.924918 TCTTGAGATAGAGCGGTATGC 57.075 47.619 0.00 0.00 46.98 3.14
71 72 7.095439 GGATTTTTCTTGAGATAGAGCGGTATG 60.095 40.741 0.00 0.00 0.00 2.39
72 73 6.931840 GGATTTTTCTTGAGATAGAGCGGTAT 59.068 38.462 0.00 0.00 0.00 2.73
73 74 6.281405 GGATTTTTCTTGAGATAGAGCGGTA 58.719 40.000 0.00 0.00 0.00 4.02
74 75 5.119694 GGATTTTTCTTGAGATAGAGCGGT 58.880 41.667 0.00 0.00 0.00 5.68
75 76 4.210120 CGGATTTTTCTTGAGATAGAGCGG 59.790 45.833 0.00 0.00 0.00 5.52
76 77 5.043903 TCGGATTTTTCTTGAGATAGAGCG 58.956 41.667 0.00 0.00 0.00 5.03
77 78 5.051374 CGTCGGATTTTTCTTGAGATAGAGC 60.051 44.000 0.00 0.00 0.00 4.09
78 79 5.460419 CCGTCGGATTTTTCTTGAGATAGAG 59.540 44.000 4.91 0.00 0.00 2.43
79 80 5.126545 TCCGTCGGATTTTTCTTGAGATAGA 59.873 40.000 10.71 0.00 0.00 1.98
80 81 5.348986 TCCGTCGGATTTTTCTTGAGATAG 58.651 41.667 10.71 0.00 0.00 2.08
81 82 5.333299 TCCGTCGGATTTTTCTTGAGATA 57.667 39.130 10.71 0.00 0.00 1.98
82 83 4.202245 TCCGTCGGATTTTTCTTGAGAT 57.798 40.909 10.71 0.00 0.00 2.75
83 84 3.671008 TCCGTCGGATTTTTCTTGAGA 57.329 42.857 10.71 0.00 0.00 3.27
84 85 3.932710 TGATCCGTCGGATTTTTCTTGAG 59.067 43.478 27.03 0.00 43.27 3.02
85 86 3.932822 TGATCCGTCGGATTTTTCTTGA 58.067 40.909 27.03 0.00 43.27 3.02
86 87 4.678509 TTGATCCGTCGGATTTTTCTTG 57.321 40.909 27.03 0.00 43.27 3.02
87 88 5.001232 TCTTTGATCCGTCGGATTTTTCTT 58.999 37.500 27.03 4.46 43.27 2.52
88 89 4.575885 TCTTTGATCCGTCGGATTTTTCT 58.424 39.130 27.03 5.27 43.27 2.52
89 90 4.201822 CCTCTTTGATCCGTCGGATTTTTC 60.202 45.833 27.03 16.00 43.27 2.29
90 91 3.689649 CCTCTTTGATCCGTCGGATTTTT 59.310 43.478 27.03 6.51 43.27 1.94
91 92 3.270877 CCTCTTTGATCCGTCGGATTTT 58.729 45.455 27.03 6.92 43.27 1.82
92 93 2.420129 CCCTCTTTGATCCGTCGGATTT 60.420 50.000 27.03 7.75 43.27 2.17
93 94 1.139058 CCCTCTTTGATCCGTCGGATT 59.861 52.381 27.03 11.67 43.27 3.01
94 95 0.753262 CCCTCTTTGATCCGTCGGAT 59.247 55.000 26.70 26.70 46.28 4.18
95 96 1.956629 GCCCTCTTTGATCCGTCGGA 61.957 60.000 18.01 18.01 35.55 4.55
96 97 1.521681 GCCCTCTTTGATCCGTCGG 60.522 63.158 4.39 4.39 0.00 4.79
97 98 1.084370 GTGCCCTCTTTGATCCGTCG 61.084 60.000 0.00 0.00 0.00 5.12
98 99 0.744771 GGTGCCCTCTTTGATCCGTC 60.745 60.000 0.00 0.00 0.00 4.79
99 100 1.299976 GGTGCCCTCTTTGATCCGT 59.700 57.895 0.00 0.00 0.00 4.69
100 101 1.026718 GTGGTGCCCTCTTTGATCCG 61.027 60.000 0.00 0.00 0.00 4.18
101 102 0.038166 TGTGGTGCCCTCTTTGATCC 59.962 55.000 0.00 0.00 0.00 3.36
102 103 1.909700 TTGTGGTGCCCTCTTTGATC 58.090 50.000 0.00 0.00 0.00 2.92
103 104 2.380064 TTTGTGGTGCCCTCTTTGAT 57.620 45.000 0.00 0.00 0.00 2.57
104 105 2.380064 ATTTGTGGTGCCCTCTTTGA 57.620 45.000 0.00 0.00 0.00 2.69
105 106 2.095263 CGTATTTGTGGTGCCCTCTTTG 60.095 50.000 0.00 0.00 0.00 2.77
106 107 2.159382 CGTATTTGTGGTGCCCTCTTT 58.841 47.619 0.00 0.00 0.00 2.52
107 108 1.821216 CGTATTTGTGGTGCCCTCTT 58.179 50.000 0.00 0.00 0.00 2.85
108 109 0.676782 GCGTATTTGTGGTGCCCTCT 60.677 55.000 0.00 0.00 0.00 3.69
109 110 1.800681 GCGTATTTGTGGTGCCCTC 59.199 57.895 0.00 0.00 0.00 4.30
110 111 2.038269 CGCGTATTTGTGGTGCCCT 61.038 57.895 0.00 0.00 0.00 5.19
111 112 2.483288 CGCGTATTTGTGGTGCCC 59.517 61.111 0.00 0.00 0.00 5.36
112 113 2.202427 GCGCGTATTTGTGGTGCC 60.202 61.111 8.43 0.00 0.00 5.01
113 114 2.202427 GGCGCGTATTTGTGGTGC 60.202 61.111 8.43 0.00 36.50 5.01
114 115 1.902716 TTCGGCGCGTATTTGTGGTG 61.903 55.000 8.43 0.00 0.00 4.17
115 116 1.229315 TTTCGGCGCGTATTTGTGGT 61.229 50.000 8.43 0.00 0.00 4.16
116 117 0.791610 GTTTCGGCGCGTATTTGTGG 60.792 55.000 8.43 0.00 0.00 4.17
117 118 0.791610 GGTTTCGGCGCGTATTTGTG 60.792 55.000 8.43 0.00 0.00 3.33
118 119 1.229315 TGGTTTCGGCGCGTATTTGT 61.229 50.000 8.43 0.00 0.00 2.83
119 120 0.098025 ATGGTTTCGGCGCGTATTTG 59.902 50.000 8.43 0.00 0.00 2.32
120 121 0.375803 GATGGTTTCGGCGCGTATTT 59.624 50.000 8.43 0.00 0.00 1.40
121 122 0.741574 TGATGGTTTCGGCGCGTATT 60.742 50.000 8.43 0.00 0.00 1.89
122 123 0.741574 TTGATGGTTTCGGCGCGTAT 60.742 50.000 8.43 0.00 0.00 3.06
123 124 0.949588 TTTGATGGTTTCGGCGCGTA 60.950 50.000 8.43 0.00 0.00 4.42
124 125 1.787057 TTTTGATGGTTTCGGCGCGT 61.787 50.000 8.43 0.00 0.00 6.01
125 126 0.661780 TTTTTGATGGTTTCGGCGCG 60.662 50.000 0.00 0.00 0.00 6.86
126 127 3.187211 TTTTTGATGGTTTCGGCGC 57.813 47.368 0.00 0.00 0.00 6.53
180 181 4.681978 ACCCTCAGTTCACGCGCC 62.682 66.667 5.73 0.00 0.00 6.53
181 182 3.414700 CACCCTCAGTTCACGCGC 61.415 66.667 5.73 0.00 0.00 6.86
182 183 2.022129 GTCACCCTCAGTTCACGCG 61.022 63.158 3.53 3.53 0.00 6.01
183 184 0.320771 ATGTCACCCTCAGTTCACGC 60.321 55.000 0.00 0.00 0.00 5.34
184 185 1.432514 CATGTCACCCTCAGTTCACG 58.567 55.000 0.00 0.00 0.00 4.35
185 186 1.160137 GCATGTCACCCTCAGTTCAC 58.840 55.000 0.00 0.00 0.00 3.18
186 187 0.320683 CGCATGTCACCCTCAGTTCA 60.321 55.000 0.00 0.00 0.00 3.18
187 188 1.021390 CCGCATGTCACCCTCAGTTC 61.021 60.000 0.00 0.00 0.00 3.01
188 189 1.003355 CCGCATGTCACCCTCAGTT 60.003 57.895 0.00 0.00 0.00 3.16
189 190 2.665000 CCGCATGTCACCCTCAGT 59.335 61.111 0.00 0.00 0.00 3.41
190 191 2.124983 CCCGCATGTCACCCTCAG 60.125 66.667 0.00 0.00 0.00 3.35
191 192 4.408821 GCCCGCATGTCACCCTCA 62.409 66.667 0.00 0.00 0.00 3.86
225 226 3.126001 TGATGATATTTGTCCGCCCTC 57.874 47.619 0.00 0.00 0.00 4.30
230 231 4.150627 GGACACGATGATGATATTTGTCCG 59.849 45.833 2.29 0.00 41.48 4.79
379 393 0.550914 AGGATGAGAGAGCGGAGAGT 59.449 55.000 0.00 0.00 0.00 3.24
380 394 1.238439 GAGGATGAGAGAGCGGAGAG 58.762 60.000 0.00 0.00 0.00 3.20
386 400 1.068333 GCGAGATGAGGATGAGAGAGC 60.068 57.143 0.00 0.00 0.00 4.09
390 404 1.175347 CCCGCGAGATGAGGATGAGA 61.175 60.000 8.23 0.00 40.56 3.27
392 406 0.755327 TTCCCGCGAGATGAGGATGA 60.755 55.000 8.23 0.00 40.56 2.92
452 478 1.916738 GGACGGAGAGGGAGAGAGA 59.083 63.158 0.00 0.00 0.00 3.10
456 482 2.271497 GACGGACGGAGAGGGAGA 59.729 66.667 0.00 0.00 0.00 3.71
472 532 2.094757 TTGTTCGCTCTTGCTCCGGA 62.095 55.000 2.93 2.93 36.97 5.14
473 533 1.630244 CTTGTTCGCTCTTGCTCCGG 61.630 60.000 0.00 0.00 36.97 5.14
573 639 1.218585 CACTCTGGCTCTCTGGCTG 59.781 63.158 0.00 0.00 42.34 4.85
574 640 1.229145 ACACTCTGGCTCTCTGGCT 60.229 57.895 0.00 0.00 42.34 4.75
575 641 1.079266 CACACTCTGGCTCTCTGGC 60.079 63.158 0.00 0.00 42.18 4.85
576 642 0.902048 TCCACACTCTGGCTCTCTGG 60.902 60.000 0.00 0.00 40.39 3.86
578 644 1.247419 CGTCCACACTCTGGCTCTCT 61.247 60.000 0.00 0.00 40.39 3.10
581 647 1.608717 ATCCGTCCACACTCTGGCTC 61.609 60.000 0.00 0.00 40.39 4.70
582 648 1.194781 AATCCGTCCACACTCTGGCT 61.195 55.000 0.00 0.00 40.39 4.75
584 650 1.726853 GAAATCCGTCCACACTCTGG 58.273 55.000 0.00 0.00 42.29 3.86
586 652 3.814577 CGAAATCCGTCCACACTCT 57.185 52.632 0.00 0.00 0.00 3.24
685 764 2.677289 ATCAGCAGCAGTGGGGAGG 61.677 63.158 0.00 0.00 0.00 4.30
748 833 2.751837 GGGGCTAGCAGGCAACAC 60.752 66.667 18.24 0.00 43.44 3.32
925 1019 0.972883 GGGAGGAGGATCAATCTCGG 59.027 60.000 0.00 0.00 36.25 4.63
961 1055 6.118170 CCAAATCAGAACACCTGTCAGATAT 58.882 40.000 0.00 0.00 43.38 1.63
1101 1195 3.359950 GGGCAGAAATCAGTCAAGGAAT 58.640 45.455 0.00 0.00 0.00 3.01
1104 1198 1.089920 CGGGCAGAAATCAGTCAAGG 58.910 55.000 0.00 0.00 0.00 3.61
1171 1265 5.577164 ACAACACGGATAAGAAAGAATCGAG 59.423 40.000 0.00 0.00 0.00 4.04
1206 1300 3.059982 CGACTGCTCCAAGACCCA 58.940 61.111 0.00 0.00 0.00 4.51
1207 1301 2.435059 GCGACTGCTCCAAGACCC 60.435 66.667 0.00 0.00 38.39 4.46
1208 1302 2.811317 CGCGACTGCTCCAAGACC 60.811 66.667 0.00 0.00 39.65 3.85
1209 1303 2.811317 CCGCGACTGCTCCAAGAC 60.811 66.667 8.23 0.00 39.65 3.01
1210 1304 2.989253 TCCGCGACTGCTCCAAGA 60.989 61.111 8.23 0.00 39.65 3.02
1404 1510 2.896443 GGAGGAACTGAGGCGGAG 59.104 66.667 0.00 0.00 41.55 4.63
1444 1550 9.196552 GAGGAAAACAATCAATCGAATCTTTTT 57.803 29.630 0.00 0.00 0.00 1.94
1445 1551 7.814587 GGAGGAAAACAATCAATCGAATCTTTT 59.185 33.333 0.00 0.00 0.00 2.27
1576 1686 4.641645 TTGGGGTGGCTGAGCACG 62.642 66.667 6.82 0.00 0.00 5.34
1720 1830 5.496556 TGAACTGAACCAAAAACAGAGAGA 58.503 37.500 0.00 0.00 35.85 3.10
1767 1877 7.879677 TGAAGGATAGCCAATACATATCAACAG 59.120 37.037 0.00 0.00 36.29 3.16
1805 1919 5.179368 CCACACAAACTGAACTGTACCATAG 59.821 44.000 0.00 0.00 0.00 2.23
2036 2155 9.667107 TTATTTTCCACCACTATCAGAAGTTAG 57.333 33.333 0.00 0.00 0.00 2.34
2201 2320 8.472007 AGTTCAAAGTAAAAACCACCATGATA 57.528 30.769 0.00 0.00 0.00 2.15
2217 2336 9.436957 AATACGATCTGTTTCATAGTTCAAAGT 57.563 29.630 0.00 0.00 0.00 2.66
2222 2342 9.690434 GTCAAAATACGATCTGTTTCATAGTTC 57.310 33.333 0.00 0.00 0.00 3.01
2406 2527 8.018677 AGTATACGTCAGTTGAATGAAACTTG 57.981 34.615 0.00 0.00 38.34 3.16
2410 2531 8.596271 TCAAAGTATACGTCAGTTGAATGAAA 57.404 30.769 0.00 0.00 0.00 2.69
2441 2562 7.802720 ACAATTTTGTGCAAAACAAAGAAAGAC 59.197 29.630 11.64 0.00 44.97 3.01
2497 2618 5.347907 GGTTGCCCTTTTCTATATCGTATCG 59.652 44.000 0.00 0.00 0.00 2.92
2501 2622 4.451900 CAGGTTGCCCTTTTCTATATCGT 58.548 43.478 0.00 0.00 39.89 3.73
2509 2630 1.367471 GCACCAGGTTGCCCTTTTC 59.633 57.895 0.00 0.00 39.89 2.29
2513 2634 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
2514 2635 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
2515 2636 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
2516 2637 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
2517 2638 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
2543 2664 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
2544 2665 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
2545 2666 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
2546 2667 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
2547 2668 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
2548 2669 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
2549 2670 1.850755 TTGGACCCTTCCCTGGACC 60.851 63.158 0.00 0.00 42.01 4.46
2550 2671 1.379146 GTTGGACCCTTCCCTGGAC 59.621 63.158 0.00 0.00 42.01 4.02
2551 2672 1.850755 GGTTGGACCCTTCCCTGGA 60.851 63.158 0.00 0.00 42.01 3.86
2552 2673 2.160171 TGGTTGGACCCTTCCCTGG 61.160 63.158 0.00 0.00 42.01 4.45
2553 2674 1.074951 GTGGTTGGACCCTTCCCTG 59.925 63.158 0.00 0.00 42.01 4.45
2554 2675 0.701310 AAGTGGTTGGACCCTTCCCT 60.701 55.000 0.00 0.00 42.01 4.20
2555 2676 0.187606 AAAGTGGTTGGACCCTTCCC 59.812 55.000 0.00 0.00 42.01 3.97
2556 2677 1.328279 CAAAGTGGTTGGACCCTTCC 58.672 55.000 0.00 0.00 43.19 3.46
2565 2686 5.107133 CGTACTATAGACCCAAAGTGGTTG 58.893 45.833 6.78 0.00 39.24 3.77
2566 2687 4.382362 GCGTACTATAGACCCAAAGTGGTT 60.382 45.833 6.78 0.00 39.24 3.67
2567 2688 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
2568 2689 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
2569 2690 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
2570 2691 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
2571 2692 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
2572 2693 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
2573 2694 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
2574 2695 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
2575 2696 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
2576 2697 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
2577 2698 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
2578 2699 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
2579 2700 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
2580 2701 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
2581 2702 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
2582 2703 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
2583 2704 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
2584 2705 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
2585 2706 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
2586 2707 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
2587 2708 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
2588 2709 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
2589 2710 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
2590 2711 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
2591 2712 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
2592 2713 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
2593 2714 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
2594 2715 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
2595 2716 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
2596 2717 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
2597 2718 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
2598 2719 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
2599 2720 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
2600 2721 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
2601 2722 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
2602 2723 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
2603 2724 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
2604 2725 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
2618 2739 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
2619 2740 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
2620 2741 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
2621 2742 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
2622 2743 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
2623 2744 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
2624 2745 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
2625 2746 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
2626 2747 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
2627 2748 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
2642 2763 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
2643 2764 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
2644 2765 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
2645 2766 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
2646 2767 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
2647 2768 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
2648 2769 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
2649 2770 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
2650 2771 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
2651 2772 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
2652 2773 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
2653 2774 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
2654 2775 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
2655 2776 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
2656 2777 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
2661 2782 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
2662 2783 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
2663 2784 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
2664 2785 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
2665 2786 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
2666 2787 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
2667 2788 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
2675 2796 4.803908 GGAAGGGGAGCCTTGGCG 62.804 72.222 5.95 0.00 0.00 5.69
2676 2797 4.803908 CGGAAGGGGAGCCTTGGC 62.804 72.222 2.97 2.97 0.00 4.52
2677 2798 1.972660 CTACGGAAGGGGAGCCTTGG 61.973 65.000 0.00 0.00 0.00 3.61
2678 2799 1.522569 CTACGGAAGGGGAGCCTTG 59.477 63.158 0.00 0.00 0.00 3.61
2679 2800 2.368011 GCTACGGAAGGGGAGCCTT 61.368 63.158 0.00 0.00 31.67 4.35
2680 2801 2.764547 GCTACGGAAGGGGAGCCT 60.765 66.667 0.00 0.00 31.67 4.58
2681 2802 2.666098 TTGCTACGGAAGGGGAGCC 61.666 63.158 0.00 0.00 35.40 4.70
2682 2803 1.449778 GTTGCTACGGAAGGGGAGC 60.450 63.158 0.00 0.00 36.39 4.70
2683 2804 0.391263 GTGTTGCTACGGAAGGGGAG 60.391 60.000 0.00 0.00 0.00 4.30
2684 2805 1.122632 TGTGTTGCTACGGAAGGGGA 61.123 55.000 0.00 0.00 0.00 4.81
2685 2806 0.035439 ATGTGTTGCTACGGAAGGGG 60.035 55.000 0.00 0.00 0.00 4.79
2686 2807 1.086696 CATGTGTTGCTACGGAAGGG 58.913 55.000 0.00 0.00 0.00 3.95
2687 2808 1.086696 CCATGTGTTGCTACGGAAGG 58.913 55.000 0.00 0.00 0.00 3.46
2688 2809 1.086696 CCCATGTGTTGCTACGGAAG 58.913 55.000 0.00 0.00 0.00 3.46
2689 2810 0.398696 ACCCATGTGTTGCTACGGAA 59.601 50.000 0.00 0.00 0.00 4.30
2690 2811 1.268066 TACCCATGTGTTGCTACGGA 58.732 50.000 0.00 0.00 0.00 4.69
2691 2812 2.325583 ATACCCATGTGTTGCTACGG 57.674 50.000 0.00 0.00 0.00 4.02
2692 2813 4.695217 AAAATACCCATGTGTTGCTACG 57.305 40.909 0.00 0.00 0.00 3.51
2734 2855 5.127682 ACTTTTGGTGCTCAGATGTTTTTCT 59.872 36.000 0.00 0.00 0.00 2.52
2749 2870 6.394809 ACACTTGAAGGTTTAACTTTTGGTG 58.605 36.000 13.91 13.91 33.65 4.17
2785 2906 6.969366 TGTATTGCCTGAATGCACATAATAC 58.031 36.000 0.00 0.00 41.88 1.89
2787 2908 6.041182 ACATGTATTGCCTGAATGCACATAAT 59.959 34.615 0.00 0.00 41.88 1.28
2845 2966 5.728637 AAGAGAAAATGGAGGCGATTTTT 57.271 34.783 0.00 0.08 33.31 1.94
2895 3016 0.813184 ATTCTCTGGGTGCAATTGCG 59.187 50.000 24.58 10.66 45.83 4.85
3061 3182 8.262601 TGTAGAAGAATAGGCATCCTGAATTA 57.737 34.615 0.00 0.00 34.61 1.40
3158 3279 4.270008 GTGCTCAAGGGTGGTTTATACAT 58.730 43.478 0.00 0.00 0.00 2.29
3161 3282 2.025699 GGGTGCTCAAGGGTGGTTTATA 60.026 50.000 0.00 0.00 0.00 0.98
3255 3376 2.682155 AAGGAAGAGAACCGAGCATC 57.318 50.000 0.00 0.00 0.00 3.91
3256 3377 3.425162 AAAAGGAAGAGAACCGAGCAT 57.575 42.857 0.00 0.00 0.00 3.79
3259 3380 4.570930 AGCTAAAAAGGAAGAGAACCGAG 58.429 43.478 0.00 0.00 0.00 4.63
3261 3382 5.690997 AAAGCTAAAAAGGAAGAGAACCG 57.309 39.130 0.00 0.00 0.00 4.44
3288 3411 7.176340 GGCATCCTGAATTCTATTAAAGCAGAT 59.824 37.037 7.05 0.00 0.00 2.90
3292 3415 6.890979 AGGCATCCTGAATTCTATTAAAGC 57.109 37.500 7.05 2.67 29.57 3.51
3310 3433 6.040842 ACTTCAACATGTAGAAAAACAGGCAT 59.959 34.615 0.00 0.00 34.59 4.40
3346 3472 6.640907 GCCTATTGTTTCTTCACGATTTTTGT 59.359 34.615 0.00 0.00 0.00 2.83
3368 3494 7.281774 CAGTTGATACAGACAAAATATCTGCCT 59.718 37.037 1.95 0.00 46.33 4.75
3376 3661 6.321181 ACACCAACAGTTGATACAGACAAAAT 59.679 34.615 15.36 0.00 0.00 1.82
3381 3666 8.440833 GTTTATACACCAACAGTTGATACAGAC 58.559 37.037 15.36 0.78 0.00 3.51
3401 3686 2.025699 GGGTGCTCAAGGGTGGTTTATA 60.026 50.000 0.00 0.00 0.00 0.98
3404 3689 1.152546 GGGTGCTCAAGGGTGGTTT 60.153 57.895 0.00 0.00 0.00 3.27
3429 3714 4.680237 CGTGTTCGAGGCCCAGCA 62.680 66.667 0.00 0.00 39.71 4.41
3474 3759 3.443329 AGATAGATAGCATCCTGAGCGTG 59.557 47.826 0.00 0.00 37.01 5.34
3475 3760 3.696045 AGATAGATAGCATCCTGAGCGT 58.304 45.455 0.00 0.00 37.01 5.07
3476 3761 4.717233 AAGATAGATAGCATCCTGAGCG 57.283 45.455 0.00 0.00 37.01 5.03
3477 3762 6.035368 TGAAAGATAGATAGCATCCTGAGC 57.965 41.667 0.00 0.00 0.00 4.26
3559 3909 3.064820 GGTGCACCGACAATTAATACAGG 59.935 47.826 22.49 0.00 0.00 4.00
3618 3968 8.877864 TTCTATTAAAGCAGAAAATGGAAGGA 57.122 30.769 0.00 0.00 29.93 3.36
3623 3973 9.525409 CCTGAATTCTATTAAAGCAGAAAATGG 57.475 33.333 7.05 0.00 34.61 3.16
3760 4110 5.316167 TCTGAATCCATGCACTAACAAACT 58.684 37.500 0.00 0.00 0.00 2.66
3765 4115 4.883585 TCCAATCTGAATCCATGCACTAAC 59.116 41.667 0.00 0.00 0.00 2.34
3799 4149 5.584649 TCCGGATTGCAATCAAGTACTAAAG 59.415 40.000 34.08 15.95 37.15 1.85
4004 4356 6.015940 AGCCTTACAAGAAAACAAATCAGGAG 60.016 38.462 0.00 0.00 0.00 3.69
4038 4390 8.671921 CATACACATAGTTTCAGAAATCTTGCT 58.328 33.333 0.00 0.00 0.00 3.91
4059 4411 4.890158 TTGAAAGAGGAGACAGCATACA 57.110 40.909 0.00 0.00 0.00 2.29
4081 4433 1.741028 TGTCCCCTGACTTTCATCCA 58.259 50.000 0.00 0.00 42.28 3.41
4263 4615 3.871594 AGCCAATAATACTTCTCACGTGC 59.128 43.478 11.67 0.00 0.00 5.34
4289 4685 5.104652 ACACTTCACACTACCCAACTAAGTT 60.105 40.000 0.00 0.00 0.00 2.66
4442 4838 8.614346 CAATAATTTTGGCATGTAGGAAAATGG 58.386 33.333 0.00 0.00 30.36 3.16
4521 4917 1.946768 CAAAGCACGAGGACCTGAAAA 59.053 47.619 0.00 0.00 0.00 2.29
4523 4919 0.468226 ACAAAGCACGAGGACCTGAA 59.532 50.000 0.00 0.00 0.00 3.02
4569 4965 7.039714 CCATCACCTAGTACTGCTATCATTGTA 60.040 40.741 5.39 0.00 0.00 2.41
4647 5043 7.105588 AGCACATCACTGAAACAGATTACATA 58.894 34.615 5.76 0.00 35.18 2.29
4698 5094 7.272037 ACGATAACACATTTTTGGAAGACTT 57.728 32.000 0.00 0.00 0.00 3.01
4751 5154 6.038271 AGACAAGAAACAGAAAGTACGCAAAT 59.962 34.615 0.00 0.00 0.00 2.32
4852 5255 8.059798 AGGTGAAAATTTCTATCAGTGAATGG 57.940 34.615 7.29 0.00 0.00 3.16
5139 5542 1.405526 CCACTCACCACGTAATCAGGG 60.406 57.143 0.00 0.00 0.00 4.45
5163 5566 3.198635 AGATGTCGGATTTCATGGTGAGT 59.801 43.478 0.00 0.00 0.00 3.41
5166 5569 4.441792 TGTAGATGTCGGATTTCATGGTG 58.558 43.478 0.00 0.00 0.00 4.17
5285 5688 5.766150 TTGATGTTACAACAAGGTGGAAG 57.234 39.130 3.94 0.00 43.03 3.46
5289 5692 6.760770 ACCAAATTTGATGTTACAACAAGGTG 59.239 34.615 19.86 10.26 43.03 4.00
5294 5697 7.551585 ACAGAACCAAATTTGATGTTACAACA 58.448 30.769 19.86 0.00 44.06 3.33
5301 5942 7.014615 AGAGCTTTACAGAACCAAATTTGATGT 59.985 33.333 19.86 17.93 0.00 3.06
5352 5993 7.025963 GGTCTTGACTGCAGAAAGATAAAATG 58.974 38.462 27.43 8.60 32.85 2.32
5353 5994 6.716628 TGGTCTTGACTGCAGAAAGATAAAAT 59.283 34.615 27.43 3.33 32.85 1.82
5354 5995 6.061441 TGGTCTTGACTGCAGAAAGATAAAA 58.939 36.000 27.43 16.46 32.85 1.52
5519 6160 3.950254 AGGCCTATCGCGACGTCG 61.950 66.667 32.57 32.57 43.27 5.12
5670 6311 1.173444 ATAGGAGGCTAGGACGCGTG 61.173 60.000 20.70 2.28 0.00 5.34
5721 6362 4.107051 AACGACCTACCGACCGCG 62.107 66.667 0.00 0.00 37.24 6.46
5765 6406 2.409651 CCTCTGCCGCGACTCTAC 59.590 66.667 8.23 0.00 0.00 2.59
5804 6445 5.578336 TCAGCTGAAACTCTATGACATTTCG 59.422 40.000 15.67 0.00 34.46 3.46
5821 6462 0.536724 ACACACACACAGTCAGCTGA 59.463 50.000 13.74 13.74 45.28 4.26
5842 6483 1.803555 CAACAGTCACACACACACACA 59.196 47.619 0.00 0.00 0.00 3.72
5843 6484 1.130373 CCAACAGTCACACACACACAC 59.870 52.381 0.00 0.00 0.00 3.82
5844 6485 1.271108 ACCAACAGTCACACACACACA 60.271 47.619 0.00 0.00 0.00 3.72
5845 6486 1.448985 ACCAACAGTCACACACACAC 58.551 50.000 0.00 0.00 0.00 3.82
5846 6487 2.192664 AACCAACAGTCACACACACA 57.807 45.000 0.00 0.00 0.00 3.72
5847 6488 3.569250 AAAACCAACAGTCACACACAC 57.431 42.857 0.00 0.00 0.00 3.82
5939 6589 1.839994 TCATCCCAGGAGTGACCAATC 59.160 52.381 0.00 0.00 42.04 2.67
6008 6658 5.878332 ACGCATGACTTAATGATGACAAA 57.122 34.783 0.00 0.00 0.00 2.83
6045 6695 9.233232 GCTTGAAAAACGTTCTTATATTATGGG 57.767 33.333 0.00 0.00 0.00 4.00
6060 6710 8.555166 TTCAAACTATGTTAGCTTGAAAAACG 57.445 30.769 9.50 0.00 43.75 3.60
6085 6735 4.832266 TGTCCCACAATACAAGAATGCTTT 59.168 37.500 0.00 0.00 30.14 3.51
6088 6738 4.009675 TCTGTCCCACAATACAAGAATGC 58.990 43.478 0.00 0.00 0.00 3.56
6090 6740 4.536090 TCCTCTGTCCCACAATACAAGAAT 59.464 41.667 0.00 0.00 0.00 2.40
6096 6746 3.983044 ACTTCCTCTGTCCCACAATAC 57.017 47.619 0.00 0.00 0.00 1.89
6101 6751 4.353383 AACTTAACTTCCTCTGTCCCAC 57.647 45.455 0.00 0.00 0.00 4.61
6176 6834 8.485578 AGACTTATATTTAGGAACAGAGGGAG 57.514 38.462 0.00 0.00 0.00 4.30
6178 6836 9.549078 GAAAGACTTATATTTAGGAACAGAGGG 57.451 37.037 0.00 0.00 0.00 4.30
6254 6912 8.529476 ACGGAGTAAAATAAGTGAATCTACACT 58.471 33.333 0.00 0.00 46.76 3.55
6255 6913 8.699283 ACGGAGTAAAATAAGTGAATCTACAC 57.301 34.615 0.00 0.00 41.94 2.90
6275 6933 4.563337 TCAGTTCGGATTACATACGGAG 57.437 45.455 0.00 0.00 37.17 4.63
6276 6934 4.987408 TTCAGTTCGGATTACATACGGA 57.013 40.909 0.00 0.00 37.17 4.69
6277 6935 5.983720 AGATTTCAGTTCGGATTACATACGG 59.016 40.000 0.00 0.00 37.17 4.02
6278 6936 6.918569 AGAGATTTCAGTTCGGATTACATACG 59.081 38.462 0.00 0.00 38.16 3.06
6279 6937 9.745880 TTAGAGATTTCAGTTCGGATTACATAC 57.254 33.333 0.00 0.00 0.00 2.39
6281 6939 9.667107 TTTTAGAGATTTCAGTTCGGATTACAT 57.333 29.630 0.00 0.00 0.00 2.29
6282 6940 9.496873 TTTTTAGAGATTTCAGTTCGGATTACA 57.503 29.630 0.00 0.00 0.00 2.41
6283 6941 9.974750 CTTTTTAGAGATTTCAGTTCGGATTAC 57.025 33.333 0.00 0.00 0.00 1.89
6284 6942 9.938280 TCTTTTTAGAGATTTCAGTTCGGATTA 57.062 29.630 0.00 0.00 0.00 1.75
6285 6943 8.722394 GTCTTTTTAGAGATTTCAGTTCGGATT 58.278 33.333 0.00 0.00 0.00 3.01
6286 6944 8.097662 AGTCTTTTTAGAGATTTCAGTTCGGAT 58.902 33.333 0.00 0.00 0.00 4.18
6287 6945 7.442656 AGTCTTTTTAGAGATTTCAGTTCGGA 58.557 34.615 0.00 0.00 0.00 4.55
6288 6946 7.659652 AGTCTTTTTAGAGATTTCAGTTCGG 57.340 36.000 0.00 0.00 0.00 4.30
6304 6962 9.392259 CCTCCGTTCCTAATTATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
6305 6963 8.765517 TCCTCCGTTCCTAATTATAAGTCTTTT 58.234 33.333 0.00 0.00 0.00 2.27
6306 6964 8.315220 TCCTCCGTTCCTAATTATAAGTCTTT 57.685 34.615 0.00 0.00 0.00 2.52
6307 6965 7.909485 TCCTCCGTTCCTAATTATAAGTCTT 57.091 36.000 0.00 0.00 0.00 3.01
6308 6966 7.564292 ACTTCCTCCGTTCCTAATTATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
6309 6967 7.724287 ACTTCCTCCGTTCCTAATTATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
6310 6968 7.672122 ACTTCCTCCGTTCCTAATTATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
6311 6969 8.858094 ACTACTTCCTCCGTTCCTAATTATAAG 58.142 37.037 0.00 0.00 0.00 1.73
6312 6970 8.773033 ACTACTTCCTCCGTTCCTAATTATAA 57.227 34.615 0.00 0.00 0.00 0.98
6313 6971 9.289782 GTACTACTTCCTCCGTTCCTAATTATA 57.710 37.037 0.00 0.00 0.00 0.98
6314 6972 7.040823 CGTACTACTTCCTCCGTTCCTAATTAT 60.041 40.741 0.00 0.00 0.00 1.28
6315 6973 6.260936 CGTACTACTTCCTCCGTTCCTAATTA 59.739 42.308 0.00 0.00 0.00 1.40
6316 6974 5.067023 CGTACTACTTCCTCCGTTCCTAATT 59.933 44.000 0.00 0.00 0.00 1.40
6317 6975 4.578105 CGTACTACTTCCTCCGTTCCTAAT 59.422 45.833 0.00 0.00 0.00 1.73
6318 6976 3.941483 CGTACTACTTCCTCCGTTCCTAA 59.059 47.826 0.00 0.00 0.00 2.69
6319 6977 3.055094 ACGTACTACTTCCTCCGTTCCTA 60.055 47.826 0.00 0.00 0.00 2.94
6320 6978 2.290577 ACGTACTACTTCCTCCGTTCCT 60.291 50.000 0.00 0.00 0.00 3.36
6321 6979 2.087646 ACGTACTACTTCCTCCGTTCC 58.912 52.381 0.00 0.00 0.00 3.62
6322 6980 4.033472 GTCTACGTACTACTTCCTCCGTTC 59.967 50.000 0.00 0.00 0.00 3.95
6323 6981 3.935828 GTCTACGTACTACTTCCTCCGTT 59.064 47.826 0.00 0.00 0.00 4.44
6324 6982 3.196685 AGTCTACGTACTACTTCCTCCGT 59.803 47.826 0.00 0.00 0.00 4.69
6325 6983 3.791245 AGTCTACGTACTACTTCCTCCG 58.209 50.000 0.00 0.00 0.00 4.63
6326 6984 5.022282 AGAGTCTACGTACTACTTCCTCC 57.978 47.826 7.15 0.00 0.00 4.30
6327 6985 5.519927 GTGAGAGTCTACGTACTACTTCCTC 59.480 48.000 7.15 9.69 0.00 3.71
6328 6986 5.046735 TGTGAGAGTCTACGTACTACTTCCT 60.047 44.000 7.15 2.15 0.00 3.36
6329 6987 5.174395 TGTGAGAGTCTACGTACTACTTCC 58.826 45.833 7.15 4.18 0.00 3.46
6330 6988 6.368516 ACTTGTGAGAGTCTACGTACTACTTC 59.631 42.308 7.15 7.47 0.00 3.01
6331 6989 6.229733 ACTTGTGAGAGTCTACGTACTACTT 58.770 40.000 7.15 0.00 0.00 2.24
6332 6990 5.792741 ACTTGTGAGAGTCTACGTACTACT 58.207 41.667 5.70 5.70 0.00 2.57
6333 6991 5.636965 TGACTTGTGAGAGTCTACGTACTAC 59.363 44.000 0.00 0.00 44.99 2.73
6334 6992 5.636965 GTGACTTGTGAGAGTCTACGTACTA 59.363 44.000 0.00 0.00 44.99 1.82
6335 6993 4.451774 GTGACTTGTGAGAGTCTACGTACT 59.548 45.833 0.00 0.00 44.99 2.73
6336 6994 4.212847 TGTGACTTGTGAGAGTCTACGTAC 59.787 45.833 0.00 0.00 44.99 3.67
6337 6995 4.383173 TGTGACTTGTGAGAGTCTACGTA 58.617 43.478 0.00 0.00 44.99 3.57
6338 6996 3.211865 TGTGACTTGTGAGAGTCTACGT 58.788 45.455 0.00 0.00 44.99 3.57
6339 6997 3.898517 TGTGACTTGTGAGAGTCTACG 57.101 47.619 0.00 0.00 44.99 3.51
6340 6998 4.740695 GTGTTGTGACTTGTGAGAGTCTAC 59.259 45.833 0.00 4.38 44.99 2.59
6341 6999 4.401202 TGTGTTGTGACTTGTGAGAGTCTA 59.599 41.667 0.00 0.00 44.99 2.59
6342 7000 3.195610 TGTGTTGTGACTTGTGAGAGTCT 59.804 43.478 0.00 0.00 44.99 3.24
6435 7093 6.293698 CACAATATCTTCCACTGGATCATCA 58.706 40.000 0.00 0.00 0.00 3.07
6462 7120 1.518056 AAACTCTGCCCACATGTGCG 61.518 55.000 20.81 13.46 0.00 5.34
6491 7149 4.245845 TGCGTCACACAGAGTATTTGTA 57.754 40.909 0.00 0.00 0.00 2.41
6502 7160 3.430236 CCCTATATGTCTTGCGTCACACA 60.430 47.826 0.00 0.00 0.00 3.72
6522 7180 1.806623 CGAGATTTGGTCCGTCATCCC 60.807 57.143 0.00 0.00 0.00 3.85
6523 7181 1.571919 CGAGATTTGGTCCGTCATCC 58.428 55.000 0.00 0.00 0.00 3.51
6541 7201 0.038251 TGTTGTCTCACCTAGCTGCG 60.038 55.000 0.00 0.00 0.00 5.18
6599 7708 1.901650 GACCTTGCGCTTTGGTCTCG 61.902 60.000 27.25 4.09 44.84 4.04
6642 7751 4.397417 ACAATGAAACTCTAGGCATTCAGC 59.603 41.667 9.67 0.00 44.65 4.26
6643 7752 7.615582 TTACAATGAAACTCTAGGCATTCAG 57.384 36.000 9.67 2.62 35.47 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.